Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1339
Parameters: 2 7 7 80 10 50 1000
Length:  59937

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13936--13982
20
2.3
20
81
0
58
29
34
12
23
1.92
15368--15407
20
2.0
20
85
4
55
20
5
7
67
1.34
15442--15466
12
2.1
12
100
0
50
76
8
0
16
1.02
15460--15520
27
2.3
26
83
8
77
75
4
14
4
1.14
15459--15518
13
4.6
13
70
13
52
73
6
15
5
1.22
16566--16671
48
2.2
47
85
9
135
59
1
24
14
1.45
18340--18386
20
2.3
20
81
0
58
29
34
12
23
1.92
20643--20697
20
2.8
20
88
0
83
25
29
16
29
1.97
24003--24042
11
3.7
11
83
6
55
77
7
2
12
1.07
24081--24131
13
3.9
14
85
14
74
64
0
11
23
1.26
24081--24131
26
2.0
25
92
3
84
64
0
11
23
1.26
28581--28614
11
2.8
12
86
13
52
17
8
2
70
1.25
28585--28614
11
2.6
12
94
5
53
13
6
3
76
1.11
29795--29867
29
2.5
29
95
0
128
45
13
9
31
1.76
31082--31125
22
2.0
22
81
0
52
15
29
13
40
1.86
39376--39412
18
2.1
18
90
5
58
40
0
10
48
1.38
42648--42686
10
4.0
10
86
3
53
25
12
23
38
1.90
45011--45054
22
2.0
22
95
0
79
25
36
4
34
1.76
46912--46974
29
2.2
28
81
13
76
66
4
15
12
1.40
47937--47994
10
5.7
10
72
11
55
29
25
13
31
1.94
47937--47997
20
3.0
20
79
9
70
27
24
13
34
1.93
48544--48590
20
2.3
20
85
0
67
29
36
12
21
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50161--50198
15
2.6
15
95
4
69
44
5
21
28
1.73
52974--53030
10
5.7
10
72
15
55
29
26
14
29
1.95
52974--53033
20
3.0
20
78
4
68
28
25
13
33
1.93
53570--53615
20
2.3
20
81
3
58
30
34
13
21
1.91

Tables:   1

The End!