Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2787
Parameters: 2 7 7 80 10 50 1000
Length:  50459

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
434--476
3
14.0
3
80
4
50
58
6
0
34
1.25
433--476
16
2.8
16
86
3
63
56
9
0
34
1.31
1170--1203
16
2.1
16
88
0
50
2
14
8
73
1.19
1181--1220
20
2.0
20
85
9
55
2
15
5
77
1.04
1381--1430
19
2.7
18
81
9
57
50
2
0
48
1.12
1381--1435
20
2.8
19
81
10
58
50
1
0
47
1.11
1387--1435
20
2.5
19
83
3
62
51
2
0
46
1.12
2665--2711
23
2.1
23
84
7
62
51
12
4
31
1.59
5489--5561
29
2.5
29
95
0
128
31
9
13
45
1.76
10777--10830
20
2.7
20
82
0
63
24
20
18
37
1.94
10777--10850
30
2.5
30
86
8
98
21
20
18
39
1.93
10777--10841
20
3.2
20
71
16
53
23
21
16
38
1.93
17904--17986
29
2.8
29
90
1
121
33
8
12
45
1.71
21033--21074
12
3.7
11
81
12
50
76
4
9
9
1.15
21033--21074
22
1.9
22
90
9
68
76
4
9
9
1.15
23314--23355
17
2.4
18
80
7
52
57
4
23
14
1.56
30581--30620
11
3.8
10
90
9
62
80
7
2
10
1.00
30581--30621
10
3.7
11
84
9
57
80
7
2
9
0.99
33821--33872
23
2.3
22
75
21
54
9
23
1
65
1.32
33830--33884
12
4.6
12
73
15
51
12
23
0
63
1.29
33866--33903
17
2.2
18
85
4
51
10
23
2
63
1.39
37477--37531
15
3.8
14
80
7
65
74
1
21
1
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43654--43691
17
2.4
15
91
8
58
21
10
5
63
1.46
43730--43790
12
4.8
13
92
8
99
16
0
6
77
0.98
43733--43790
26
2.3
25
94
5
100
13
0
6
79
0.93
44562--44608
23
2.1
23
84
7
62
51
12
4
31
1.59
44679--44715
14
2.6
15
83
8
51
51
5
8
35
1.55
45256--45297
14
2.9
14
85
3
57
78
2
2
16
0.96
47350--47435
29
3.1
28
84
12
90
33
8
12
45
1.72
47363--47435
29
2.5
29
95
0
128
31
9
13
45
1.76

Tables:   1

The End!