genome.fa.s871.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2530
Parameters: 2 7 7 80 10 50 1000
Length:  50084

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120--149	15	1.9	16	93	6	53	3	36	6	53	1.44
3995--4149	27	5.8	26	77	18	131	28	14	29	28	1.95
3995--4150	26	5.8	25	76	18	111	28	14	28	28	1.95
3995--4171	27	6.5	27	74	19	102	28	14	28	28	1.95
5531--5999	45	10.1	45	75	10	354	32	16	21	29	1.95
5553--5999	96	4.8	96	80	7	397	32	17	20	29	1.95
5552--5816	141	1.9	141	94	0	467	32	16	21	29	1.95
5859--5998	44	3.2	42	76	8	111	30	17	23	28	1.97
6231--6264	14	2.4	14	95	0	59	44	38	5	11	1.65
6869--6939	31	2.2	33	82	12	85	35	15	30	18	1.92
7021--7046	11	2.4	11	100	0	52	38	7	0	53	1.30
7011--7090	42	1.9	42	97	0	151	35	3	0	61	1.14
7045--7103	31	2.0	30	87	9	86	37	1	0	61	1.07
7072--7110	20	2.0	20	89	0	60	38	2	0	58	1.12
7907--7978	34	2.1	34	84	5	92	25	9	0	65	1.23
9382--9420	11	3.4	11	82	10	51	17	2	2	76	1.01
11060--11100	16	2.6	16	100	0	82	58	4	31	4	1.40
12506--12555	17	3.1	16	78	13	50	14	10	0	76	1.03
12590--12651	22	2.6	24	80	14	76	38	0	1	59	1.07
12552--12651	45	2.2	46	82	8	114	38	1	4	57	1.24
12600--12675	17	3.8	19	80	16	84	38	0	0	61	0.96
12607--12684	37	2.1	37	86	11	106	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12600--12692	21	4.5	21	77	22	83	40	0	0	59	0.98
12623--12696	37	2.0	37	84	5	96	43	0	0	56	0.99
12811--12864	28	1.9	28	92	0	90	44	0	1	53	1.11
12750--12895	39	3.8	38	70	18	117	40	1	2	56	1.20
12878--12909	15	2.1	15	100	0	64	37	0	0	62	0.95
13024--13054	14	2.3	14	94	5	55	51	0	3	45	1.17
18002--18132	70	1.9	70	95	0	235	43	10	13	32	1.79
18731--18835	30	3.5	30	93	0	174	26	25	22	24	2.00
21039--21132	40	2.3	40	96	0	170	22	15	26	35	1.94
21547--21590	18	2.4	18	78	10	54	45	2	11	40	1.53
23577--23645	29	2.4	29	87	0	93	8	11	24	55	1.64
23847--23871	13	1.9	13	100	0	50	68	0	0	32	0.90
23854--23898	23	2.0	23	86	8	65	71	4	2	22	1.15
23867--23912	23	2.0	23	84	16	60	71	4	6	17	1.24
24910--24955	21	2.2	20	85	11	58	71	0	0	28	0.86
27226--27525	24	12.8	24	65	15	119	53	5	7	34	1.51
28616--28729	44	2.6	44	80	4	122	27	24	22	25	2.00
28824--29159	132	2.5	132	86	3	446	25	25	19	30	1.98
29132--29466	45	7.4	45	91	0	501	31	25	15	28	1.95
30373--30414	18	2.3	18	80	8	50	59	0	0	40	0.97
30393--30417	11	2.3	11	100	0	50	52	0	0	48	1.00
31051--31367	96	3.3	96	90	3	489	38	17	1	41	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32106--32199	9	10.4	9	89	0	116	28	8	20	42	1.81
32373--32459	44	2.0	44	97	0	165	40	24	12	22	1.89
32981--33086	53	2.0	53	100	0	212	37	5	7	49	1.55
40998--41040	11	3.9	11	76	11	52	39	2	0	58	1.11
40998--41040	22	2.0	22	85	0	59	39	2	0	58	1.11
41087--41161	37	2.0	38	84	7	100	38	40	5	16	1.71
41340--41388	22	2.2	22	85	3	62	14	2	26	57	1.48
41331--41404	23	3.2	24	77	11	73	10	1	27	60	1.38
41732--41777	9	5.2	9	80	12	51	26	2	0	71	0.97
41734--41813	24	3.5	23	74	24	80	28	3	1	66	1.17
41742--41817	15	5.1	15	73	23	54	30	3	1	64	1.20
42158--42189	14	2.3	14	94	0	55	46	6	0	46	1.27

Tables:   1

The End!