Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2633_ERROPOS159243
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 159243
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:2763 original size:27 final size:27
Alignment explanation
Indices: 2710--2780 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
2700 GTAATTATCG
* * *
2710 ATCATTTTAACACATCGGGGGTATTTCT
1 ATCATTTT-ACACTTCGAGGGTATTTCA
*
2738 ATCATTTTACTCTTCGAGGGTATTTCA
1 ATCATTTTACACTTCGAGGGTATTTCA
*
2765 ATCA-TTTACCCTTCGA
1 ATCATTTTACACTTCGA
2781 TGTTATTCGG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
26 11 0.29
27 19 0.50
28 8 0.21
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (27 bp):
ATCATTTTACACTTCGAGGGTATTTCA
Found at i:2779 original size:26 final size:25
Alignment explanation
Indices: 2727--2855 Score: 84
Period size: 27 Copynumber: 5.0 Consensus size: 25
2717 TAACACATCG
* *
2727 GGGGTATTTCTATCATTTTACTCTTC
1 GGGGTATTTCAATCA-TTTACCCTTC
2753 GAGGGTATTTCAATCATTTACCCTTC
1 G-GGGTATTTCAATCATTTACCCTTC
** ** *
2779 GATGT-TATTCGGTCAATGTTACCTTTC
1 GGGGTAT-TTCAATC-AT-TTACCCTTC
* * *
2806 GGGGTGTTTTATTCATTTACCCTT-
1 GGGGTATTTCAATCATTTACCCTTC
*
2830 GGGGTTATTTCGATCATTTA-CCTTC
1 GGGG-TATTTCAATCATTTACCCTTC
2855 G
1 G
2856 TAGTAATTTC
Statistics
Matches: 79, Mismatches: 17, Indels: 15
0.71 0.15 0.14
Matches are distributed among these distances:
24 9 0.11
25 26 0.33
26 15 0.19
27 28 0.35
28 1 0.01
ACGTcount: A:0.17, C:0.19, G:0.19, T:0.45
Consensus pattern (25 bp):
GGGGTATTTCAATCATTTACCCTTC
Found at i:8182 original size:25 final size:25
Alignment explanation
Indices: 8072--8246 Score: 151
Period size: 27 Copynumber: 6.8 Consensus size: 25
8062 CAGGTTAAAC
8072 CGAAATACCCTCGAAGCGTAAAATGAT
1 CGAAATACCCTC-AAG-GTAAAATGAT
8099 CGAAATACCCTCAAGGGT-AAATGGAAT
1 CGAAATACCCTCAA-GGTAAAAT-G-AT
** * * *
8126 TAAAACACCCTGAAGG-AAAAT-AC
1 CGAAATACCCTCAAGGTAAAATGAT
8149 CGAAATACCCTCAAGGTAAAATGAT
1 CGAAATACCCTCAAGGTAAAATGAT
*
8174 TGAAATACCCTCGAAGAGTAAAATGAT
1 CGAAATACCCTC-AAG-GTAAAATGAT
* * *
8201 AGAAATACCCCCATGTGT-AAATGAT
1 CGAAATACCCTCAAG-GTAAAATGAT
*
8226 CGAAATACCCCCAAGGGTAAA
1 CGAAATACCCTCAA-GGTAAA
8247 TTCTGTTATA
Statistics
Matches: 121, Mismatches: 17, Indels: 21
0.76 0.11 0.13
Matches are distributed among these distances:
23 13 0.11
24 5 0.04
25 37 0.31
26 21 0.17
27 45 0.37
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.18
Consensus pattern (25 bp):
CGAAATACCCTCAAGGTAAAATGAT
Found at i:21081 original size:20 final size:20
Alignment explanation
Indices: 21064--21101 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
21054 CATTCTAACA
*
21064 TTTTATTGATTAAACTAAAC
1 TTTTATTCATTAAACTAAAC
*
21084 TTTTTTTCATTAAACTAA
1 TTTTATTCATTAAACTAA
21102 GTGAGTTGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.50
Consensus pattern (20 bp):
TTTTATTCATTAAACTAAAC
Found at i:21757 original size:22 final size:22
Alignment explanation
Indices: 21715--21758 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
21705 TATATTTTAA
*
21715 TTATTTAAATAATTTATTTATT
1 TTATTTAAATAATTTACTTATT
*
21737 TTATTTAAGTTAA-TTACTTATT
1 TTATTTAA-ATAATTTACTTATT
21759 ATTTTGAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
TTATTTAAATAATTTACTTATT
Found at i:23799 original size:24 final size:24
Alignment explanation
Indices: 23768--23818 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
23758 TTGAAAAATA
23768 AAAAAAATAATTATA-TATATTTTT
1 AAAAAAAT-ATTATATTATATTTTT
* *
23792 AAAAAAATATTCTATTTTATTTTT
1 AAAAAAATATTATATTATATTTTT
23816 AAA
1 AAA
23819 TGTTTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
AAAAAAATATTATATTATATTTTT
Found at i:25334 original size:21 final size:22
Alignment explanation
Indices: 25310--25358 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
25300 GTGGTATGCA
25310 GTTTTTA-GATGATTTA-AATGT
1 GTTTTTAGGATG-TTTATAATGT
*
25331 G-TTTTAGGTTGTTTATAATGT
1 GTTTTTAGGATGTTTATAATGT
25352 GTTTTTA
1 GTTTTTA
25359 AAGTAATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 9 0.38
21 10 0.42
22 5 0.21
ACGTcount: A:0.22, C:0.00, G:0.20, T:0.57
Consensus pattern (22 bp):
GTTTTTAGGATGTTTATAATGT
Found at i:25911 original size:48 final size:49
Alignment explanation
Indices: 25832--25987 Score: 148
Period size: 48 Copynumber: 3.3 Consensus size: 49
25822 ATGTAAAGAG
* * * *
25832 TATAT-TGGTTGTG-TTTGGAGGGTATAGTTGGTTGTGTTCAGAGGTTA
1 TATATATGGTTGTGTTTTGCAAGGTACACTTGGTTGTGTTCAGAGGTTA
* * * * *
25879 TATATATGGTGGTGTTTTGCAA-GTACATTTGGTTATGTTCAAAGGGTA
1 TATATATGGTTGTGTTTTGCAAGGTACACTTGGTTGTGTTCAGAGGTTA
* * *
25927 -A-AT-TGGTTGTG-TTTGGAAGGTATACTT-GTTGTGTTCGGAGGTTA
1 TATATATGGTTGTGTTTTGCAAGGTACACTTGGTTGTGTTCAGAGGTTA
25971 TATATATGGTTGTGTTT
1 TATATATGGTTGTGTTT
25988 GGAGGGTAAA
Statistics
Matches: 86, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
44 19 0.22
45 14 0.16
46 4 0.05
47 14 0.16
48 30 0.35
49 5 0.06
ACGTcount: A:0.20, C:0.04, G:0.31, T:0.45
Consensus pattern (49 bp):
TATATATGGTTGTGTTTTGCAAGGTACACTTGGTTGTGTTCAGAGGTTA
Found at i:25948 original size:22 final size:21
Alignment explanation
Indices: 25923--26033 Score: 107
Period size: 22 Copynumber: 5.0 Consensus size: 21
25913 ATGTTCAAAG
25923 GGTAAATTGGTTGTGTTTGGAA
1 GGTAAATTGGTTGTGTTTGG-A
* *
25945 GGTATACTT-GTTGTGTTCGGA
1 GGTA-AATTGGTTGTGTTTGGA
25966 GGTTATATATATGGTTGTGTTTGGA
1 GG-TA-A-AT-TGGTTGTGTTTGGA
* *
25991 GGGTAAATTGGCTGTGTTTCGA
1 -GGTAAATTGGTTGTGTTTGGA
26013 GAGTAAATTGGTTGTGTTTGG
1 G-GTAAATTGGTTGTGTTTGG
26034 GGGTGATAGC
Statistics
Matches: 74, Mismatches: 8, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
21 4 0.05
22 47 0.64
23 6 0.08
24 2 0.03
25 13 0.18
26 2 0.03
ACGTcount: A:0.19, C:0.04, G:0.35, T:0.42
Consensus pattern (21 bp):
GGTAAATTGGTTGTGTTTGGA
Found at i:30259 original size:23 final size:23
Alignment explanation
Indices: 30217--30379 Score: 118
Period size: 23 Copynumber: 7.1 Consensus size: 23
30207 TATGTTGAAA
* *
30217 GGTAT-ATTGATTGTGATTGGAG
1 GGTATAATTGGTTGTGTTTGGAG
*
30239 GGTATAGTTGGTTGTGTTTGGAG
1 GGTATAATTGGTTGTGTTTGGAG
* *
30262 GTTATATATATGGCTT-TGTTTTGAG
1 GGTATA-AT-TGG-TTGTGTTTGGAG
* * *
30287 GGTACATTTGGTTGTGTTCGGAG
1 GGTATAATTGGTTGTGTTTGGAG
** *
30310 GGTA-AATTATTTGTGTTTAGAG
1 GGTATAATTGGTTGTGTTTGGAG
* ** *
30332 GCTATGTTTTGTTGTGTTTGGAG
1 GGTATAATTGGTTGTGTTTGGAG
* *
30355 GGTA-AATTGGTTGTATTTGGTG
1 GGTATAATTGGTTGTGTTTGGAG
30377 GGT
1 GGT
30380 GATAGATTTA
Statistics
Matches: 107, Mismatches: 28, Indels: 12
0.73 0.19 0.08
Matches are distributed among these distances:
22 39 0.36
23 49 0.46
24 2 0.02
25 15 0.14
26 2 0.02
ACGTcount: A:0.17, C:0.02, G:0.35, T:0.45
Consensus pattern (23 bp):
GGTATAATTGGTTGTGTTTGGAG
Found at i:31126 original size:10 final size:10
Alignment explanation
Indices: 31107--31157 Score: 57
Period size: 10 Copynumber: 5.1 Consensus size: 10
31097 ACGTAATTCA
31107 AACAGAATAG
1 AACAGAATAG
*
31117 AACTGAATAG
1 AACAGAATAG
*
31127 AGCAGAATAG
1 AACAGAATAG
* *
31137 AACAGGATGG
1 AACAGAATAG
*
31147 AACAGAGTAG
1 AACAGAATAG
31157 A
1 A
31158 GCAATACTAA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.51, C:0.10, G:0.27, T:0.12
Consensus pattern (10 bp):
AACAGAATAG
Found at i:34030 original size:27 final size:27
Alignment explanation
Indices: 33986--34266 Score: 314
Period size: 27 Copynumber: 10.4 Consensus size: 27
33976 TGCGATTTGT
* * *
33986 GGGTAAAATGATCAAAATACCCTTGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
* * *
34013 GGTTAAAGTGACCGAAATACGCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
*
34040 GGGTAAAATAACCGAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
*
34067 GGGTAAAATAACCGAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
* *
34094 GGGTAAAATGATCGAAATACCCTCCAA
1 GGGTAAAATGACCGAAATACCCTCGAA
*** *
34121 -GGTAAAATGAATAAAACACCCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
*
34147 GGGTAAAATAACCGAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
*
34174 GGGTAAAATGACTGAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCTCGAA
** ** *
34201 GATTAAAATGATTGAAATA-CCTCCGAT
1 GGGTAAAATGACCGAAATACCCT-CGAA
* * * *
34228 GTGTAAAATGACTGAAATACCCCCAAA
1 GGGTAAAATGACCGAAATACCCTCGAA
34255 GGGTAAAATGAC
1 GGGTAAAATGAC
34267 TATTATACCC
Statistics
Matches: 215, Mismatches: 36, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
26 24 0.11
27 189 0.88
28 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCTCGAA
Found at i:34234 original size:134 final size:136
Alignment explanation
Indices: 33986--34265 Score: 356
Period size: 134 Copynumber: 2.1 Consensus size: 136
33976 TGCGATTTGT
* * * * * *
33986 GGGTAAAATG-ATCAAAATACCCTTGAAGGTTAAAGTGACCGAAATACGCTCGAAGGGTAAAATA
1 GGGTAAAATGAATCAAAACACCCTCGAAGGGTAAAATAACCGAAATACCCTCGAAGGGTAAAATA
*
34050 ACCGAAATACCCTCGAAGGGTAAAATAACCGAAATACCCTCGAAGGGTAAAATGA-TCGAAATAC
66 ACCGAAATACCCTCGAAGAGTAAAATAACCGAAATACCCTCGAAGGGTAAAATGACT-GAAATAC
34114 CCTCC-AA
130 CC-CCAAA
*
34121 -GGTAAAATGAAT-AAAACACCCTCGAAGGGTAAAATAACCGAAATACCCTCGAAGGGTAAAATG
1 GGGTAAAATGAATCAAAACACCCTCGAAGGGTAAAATAACCGAAATACCCTCGAAGGGTAAAATA
* * * ** * *
34184 ACTGAAATACCCTCGAAGATTAAAATGATTGAAATA-CCTCCGATGTGTAAAATGACTGAAATAC
66 ACCGAAATACCCTCGAAGAGTAAAATAACCGAAATACCCT-CGAAGGGTAAAATGACTGAAATAC
34248 CCCCAAA
130 CCCCAAA
34255 GGGTAAAATGA
1 GGGTAAAATGA
34266 CTATTATACC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
133 5 0.04
134 107 0.86
135 13 0.10
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (136 bp):
GGGTAAAATGAATCAAAACACCCTCGAAGGGTAAAATAACCGAAATACCCTCGAAGGGTAAAATA
ACCGAAATACCCTCGAAGAGTAAAATAACCGAAATACCCTCGAAGGGTAAAATGACTGAAATACC
CCCAAA
Found at i:34513 original size:25 final size:25
Alignment explanation
Indices: 34455--34548 Score: 98
Period size: 25 Copynumber: 3.7 Consensus size: 25
34445 CTGTTAACGA
* * *
34455 CAGCTTTGTTGCGTTACTGTTACTGG
1 CAGCTTTGCTGCGTTATTATT-CTGG
**
34481 CAAATTTGCTGCGTTATTATTCTGG
1 CAGCTTTGCTGCGTTATTATTCTGG
* *
34506 CAGCTTTGTTACGTTATTATTCTGG
1 CAGCTTTGCTGCGTTATTATTCTGG
* *
34531 TAGCTTTGCTGCGATATT
1 CAGCTTTGCTGCGTTATT
34549 GGTGTGTTGG
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
25 39 0.71
26 16 0.29
ACGTcount: A:0.16, C:0.17, G:0.22, T:0.45
Consensus pattern (25 bp):
CAGCTTTGCTGCGTTATTATTCTGG
Found at i:41025 original size:22 final size:20
Alignment explanation
Indices: 40983--41029 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
40973 GGTTACCGAA
*
40983 TCTTCTCTTCTCTCTTCCCC
1 TCTTCTCTTCTCTATTCCCC
*
41003 TCTTCTCTTTTCTGATTCTCCC
1 TCTTCTCTTCTCT-ATTC-CCC
41025 TCTTC
1 TCTTC
41030 CCTAACTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 12 0.52
21 3 0.13
22 8 0.35
ACGTcount: A:0.02, C:0.43, G:0.02, T:0.53
Consensus pattern (20 bp):
TCTTCTCTTCTCTATTCCCC
Found at i:41756 original size:27 final size:27
Alignment explanation
Indices: 41718--41971 Score: 330
Period size: 27 Copynumber: 9.4 Consensus size: 27
41708 TATGATTCGT
* *
41718 GGGTAAAATGATTGATATACCCTCGAA
1 GGGTAAAATGATCGAAATACCCTCGAA
41745 GGGTAAAATGATCGAAATACCCTCGAA
1 GGGTAAAATGATCGAAATACCCTCGAA
41772 GGGTAAAATGATCGAAATACCCTCGAA
1 GGGTAAAATGATCGAAATACCCTCGAA
* * * *
41799 GGGTAAAATAACCAAAATACCCTCAAA
1 GGGTAAAATGATCGAAATACCCTCGAA
* *
41826 GGGTAAAATGATTGAAATACCCTTGAA
1 GGGTAAAATGATCGAAATACCCTCGAA
* *
41853 GTGTAAAATGATCGAAATACCCCCGAA
1 GGGTAAAATGATCGAAATACCCTCGAA
* * *
41880 GGTTAAAATGATTGAAATACCCTTGAA
1 GGGTAAAATGATCGAAATACCCTCGAA
*
41907 GAGTAAAATGATC-AAAGTACCCTCGAA
1 GGGTAAAATGATCGAAA-TACCCTCGAA
* * *
41934 AGGTAAAATGACCGAAATACCCCCGAA
1 GGGTAAAATGATCGAAATACCCTCGAA
*
41961 AGGTAAAATGA
1 GGGTAAAATGA
41972 CTGTTATACC
Statistics
Matches: 196, Mismatches: 29, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
26 3 0.02
27 190 0.97
28 3 0.02
ACGTcount: A:0.43, C:0.17, G:0.20, T:0.20
Consensus pattern (27 bp):
GGGTAAAATGATCGAAATACCCTCGAA
Found at i:42185 original size:26 final size:25
Alignment explanation
Indices: 42156--42214 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
42146 TTATCGAAAA
*
42156 CTTTGCTGCGTTA-CTGTTACTGGTAG
1 CTTTGCTGCGTTATC-ATT-CTGGTAG
*
42182 CTTTGTTGCGTTATCATTCTGGTAG
1 CTTTGCTGCGTTATCATTCTGGTAG
42207 CTTTGCTG
1 CTTTGCTG
42215 GGATATTGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 14 0.48
26 14 0.48
27 1 0.03
ACGTcount: A:0.10, C:0.19, G:0.25, T:0.46
Consensus pattern (25 bp):
CTTTGCTGCGTTATCATTCTGGTAG
Found at i:44520 original size:28 final size:27
Alignment explanation
Indices: 44479--44651 Score: 175
Period size: 28 Copynumber: 6.2 Consensus size: 27
44469 GTGATAGTAT
* * *
44479 AGTGTCGGCCTTAGGCCAATACAATAAC
1 AGTGTGGGCCTTAGCCCAATATAA-AAC
* * * * *
44507 GGTGTAGGCCTTAGCCCAAGATAGTAGC
1 AGTGTGGGCCTTAGCCCAATATA-AAAC
*
44535 AGTGTGGGCCTTAGCCCAATATAGAATC
1 AGTGTGGGCCTTAGCCCAATATA-AAAC
*
44563 AGTGTGGGCCTTAGCCCAATATAGAATC
1 AGTGTGGGCCTTAGCCCAATATA-AAAC
* *
44591 AGTGTGGGCCTTAGGCCAATACAAAATC
1 AGTGTGGGCCTTAGCCCAATATAAAA-C
*
44619 AGTGTGGGCCTTAGCCCAATATAGTAAC
1 AGTGTGGGCCTTAGCCCAATATA-AAAC
44647 AGTGT
1 AGTGT
44652 AGTGAAATAA
Statistics
Matches: 124, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 2 0.02
28 120 0.97
29 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (27 bp):
AGTGTGGGCCTTAGCCCAATATAAAAC
Found at i:44554 original size:56 final size:54
Alignment explanation
Indices: 44471--44651 Score: 218
Period size: 56 Copynumber: 3.2 Consensus size: 54
44461 CCTATCCAGT
* * * *
44471 GATAGTATAGTGTCGGCCTTAGGCCAATACAATAACGGTGTAGGCCTTAGCCCAA
1 GATAGTACAGTGTGGGCCTTAGGCCAATACAA-AACAGTGTGGGCCTTAGCCCAA
* * *
44526 GATAGTAGCAGTGTGGGCCTTAGCCCAATATAGAATCAGTGTGGGCCTTAGCCCAA
1 GATAGTA-CAGTGTGGGCCTTAGGCCAATACA-AAACAGTGTGGGCCTTAGCCCAA
* *
44582 TATAGAATCAGTGTGGGCCTTAGGCCAATACAAAATCAGTGTGGGCCTTAGCCCAA
1 GATAGTA-CAGTGTGGGCCTTAGGCCAATACAAAA-CAGTGTGGGCCTTAGCCCAA
*
44638 TATAGTAACAGTGT
1 GATAGT-ACAGTGT
44652 AGTGAAATAA
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
55 9 0.08
56 97 0.90
57 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.24
Consensus pattern (54 bp):
GATAGTACAGTGTGGGCCTTAGGCCAATACAAAACAGTGTGGGCCTTAGCCCAA
Found at i:45096 original size:27 final size:27
Alignment explanation
Indices: 45066--45306 Score: 206
Period size: 27 Copynumber: 9.0 Consensus size: 27
45056 AGTATAACAG
45066 TCATTTTGA-CCTATGAGGGTATTTTTA
1 TCATTTT-ACCCTATGAGGGTATTTTTA
* * **
45093 TCATTTTACCCTATAAAGGTATTTCGA
1 TCATTTTACCCTATGAGGGTATTTTTA
* ***
45120 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTTTA
* * *
45147 TCATTTTACCCTATAAAGGTA-TTTCA
1 TCATTTTACCCTATGAGGGTATTTTTA
45173 GTCATTTTACCCTATGAGGGTA-TTTTA
1 -TCATTTTACCCTATGAGGGTATTTTTA
* *
45200 GTTATTTTACCCTATTG-GGGTATTTTAA
1 -TCATTTTACCCTA-TGAGGGTATTTTTA
* * ***
45228 TCACTTTACCCTATGGGGGTATTCCAA
1 TCATTTTACCCTATGAGGGTATTTTTA
* *
45255 TTATTTTACCCTAT-AGGGTA-TTTCA
1 TCATTTTACCCTATGAGGGTATTTTTA
*
45280 GTCATTTTACCCTATGGGGGTATTTTT
1 -TCATTTTACCCTATGAGGGTATTTTT
45307 GTAACAGCCC
Statistics
Matches: 174, Mismatches: 32, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
25 2 0.01
26 23 0.13
27 140 0.80
28 9 0.05
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (27 bp):
TCATTTTACCCTATGAGGGTATTTTTA
Found at i:45133 original size:54 final size:54
Alignment explanation
Indices: 45063--45306 Score: 280
Period size: 54 Copynumber: 4.5 Consensus size: 54
45053 AGGAGTATAA
*
45063 CAGTCATTTTGA-CCTATGAGGGTATTTTTATCATTTTACCCTATAAAGGTATTT
1 CAGTCATTTT-ACCCTATGGGGGTATTTTTATCATTTTACCCTATAAAGGTATTT
***
45117 C-GATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATAAAGGTATTT
1 CAG-TCATTTTACCCTATGGGGGTATTTTTATCATTTTACCCTATAAAGGTATTT
* * ***
45171 CAGTCATTTTACCCTATGAGGGTA-TTTTAGTTATTTTACCCTATTGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTTTTA-TCATTTTACCCTATAAAGGTATTT
* * * *** * *
45225 TAATCACTTTACCCTATGGGGGTATTCCAATTATTTTACCCTAT-AGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTTTTATCATTTTACCCTATAAAGGTATTT
45278 CAGTCATTTTACCCTATGGGGGTATTTTT
1 CAGTCATTTTACCCTATGGGGGTATTTTT
45307 GTAACAGCCC
Statistics
Matches: 159, Mismatches: 26, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
53 35 0.22
54 121 0.76
55 3 0.02
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (54 bp):
CAGTCATTTTACCCTATGGGGGTATTTTTATCATTTTACCCTATAAAGGTATTT
Found at i:45178 original size:81 final size:80
Alignment explanation
Indices: 45092--45304 Score: 266
Period size: 81 Copynumber: 2.6 Consensus size: 80
45082 GGGTATTTTT
* ** *
45092 ATCATTTTACCCTATAAAGGTATTTC-GATCATTTTACCCTATGGGGGTATTTCGGTCATTTTAC
1 ATCATTTTACCCTAT-AGGGTATTTCAG-TCATTTTACCCTATGGGGGTATTTCAATCACTTTAC
*
45156 CCTATAAAGGTATTTCA
64 CCTATAAAGGTATTCCA
* * * * *
45173 GTCATTTTACCCTATGAGGGTATTTTAGTTATTTTACCCTATTGGGGTATTTTAATCACTTTACC
1 ATCATTTTACCCTAT-AGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCAATCACTTTACC
***
45238 CTATGGGGGTATTCCA
65 CTATAAAGGTATTCCA
*
45254 ATTATTTTACCCTATAGGGTATTTCAGTCATTTTACCCTATGGGGGTATTT
1 ATCATTTTACCCTATAGGGTATTTCAGTCATTTTACCCTATGGGGGTATTT
45305 TTGTAACAGC
Statistics
Matches: 112, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 33 0.29
81 78 0.70
82 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (80 bp):
ATCATTTTACCCTATAGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCAATCACTTTACCC
TATAAAGGTATTCCA
Found at i:48858 original size:27 final size:27
Alignment explanation
Indices: 48784--48851 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
48774 GGGTGTTACA
*
48784 ATTTCAGTCATTTTACCCTATGGGGGT
1 ATTTCAGTCATTTTACCCTATGGCGGT
*
48811 ATTTCAATCATTTTACCCTATGGCGGT
1 ATTTCAGTCATTTTACCCTATGGCGGT
*
48838 ATTTCAGTCTTTTT
1 ATTTCAGTCATTTT
48852 CATCTATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (27 bp):
ATTTCAGTCATTTTACCCTATGGCGGT
Found at i:58243 original size:27 final size:27
Alignment explanation
Indices: 58213--58327 Score: 137
Period size: 27 Copynumber: 4.3 Consensus size: 27
58203 TCAATATTTA
58213 TAAAATGACCATAATACCCTTGTAGGG
1 TAAAATGACCATAATACCCTTGTAGGG
** *
58240 TAAAATGACTGTAATGCCCTTGTAGGG
1 TAAAATGACCATAATACCCTTGTAGGG
58267 TAAAATGA-CAGTAATACCCTTGTAGGG
1 TAAAATGACCA-TAATACCCTTGTAGGG
* ** *
58294 TAAAATAACTGTAATACCCTAGT-GGG
1 TAAAATGACCATAATACCCTTGTAGGG
58320 T-AAATGAC
1 TAAAATGAC
58328 TATTTTTGCC
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
25 6 0.08
26 4 0.05
27 65 0.87
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.27
Consensus pattern (27 bp):
TAAAATGACCATAATACCCTTGTAGGG
Found at i:58282 original size:54 final size:52
Alignment explanation
Indices: 58213--58327 Score: 169
Period size: 54 Copynumber: 2.2 Consensus size: 52
58203 TCAATATTTA
* * *
58213 TAAAATGACCATAATACCCTTGTAGGGTAAAATGACTGTAATGCCCTTGTAGGG
1 TAAAATGA-CATAATACCCTTGTAGGGTAAAATAACTGTAATACCCTAGT-GGG
58267 TAAAATGACAGTAATACCCTTGTAGGGTAAAATAACTGTAATACCCTAGTGGG
1 TAAAATGACA-TAATACCCTTGTAGGGTAAAATAACTGTAATACCCTAGTGGG
58320 T-AAATGAC
1 TAAAATGAC
58328 TATTTTTGCC
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
52 7 0.12
53 6 0.11
54 44 0.77
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.27
Consensus pattern (52 bp):
TAAAATGACATAATACCCTTGTAGGGTAAAATAACTGTAATACCCTAGTGGG
Found at i:58424 original size:24 final size:23
Alignment explanation
Indices: 58358--58430 Score: 83
Period size: 24 Copynumber: 3.1 Consensus size: 23
58348 AAATGATTAT
* *
58358 TTTGTCTGCGGTTAAATGACTGA
1 TTTGTCTGTGTTTAAATGACTGA
**
58381 TTTGTCTGTGTTTGGTATGACTGA
1 TTTGTCTGTGTTT-AAATGACTGA
*
58405 TTTGTCTGTGATTTAAATGATTGA
1 TTTGTCTGTG-TTTAAATGACTGA
58429 TT
1 TT
58431 CTAAGCATGA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
23 11 0.27
24 27 0.66
25 3 0.07
ACGTcount: A:0.19, C:0.08, G:0.25, T:0.48
Consensus pattern (23 bp):
TTTGTCTGTGTTTAAATGACTGA
Found at i:58576 original size:23 final size:23
Alignment explanation
Indices: 58550--58606 Score: 60
Period size: 26 Copynumber: 2.3 Consensus size: 23
58540 CTACATATAC
*
58550 TATTACTGGCAGCTTTGCTGCGA
1 TATTACTGGCAACTTTGCTGCGA
*
58573 TATTTATGCTGGCAACTTTGTTGCGA
1 TA-TTA--CTGGCAACTTTGCTGCGA
*
58599 TACTACTG
1 TATTACTG
58607 ATGGCTTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
23 5 0.18
24 3 0.11
25 2 0.07
26 18 0.64
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (23 bp):
TATTACTGGCAACTTTGCTGCGA
Found at i:58706 original size:64 final size:62
Alignment explanation
Indices: 58602--58841 Score: 203
Period size: 64 Copynumber: 3.8 Consensus size: 62
58592 GTTGCGATAC
* * * * * * *
58602 TACTGATGGCTTTGTGTCGATCATAGTACCATTATTGATGGCTTTGTACCGATCACAGTACCGT
1 TACTGATGGCTGTGTGCCGATCATATTA-CGTTACTGATGGCTTTGTGCCGATCA-TGTACCGT
* * * * * * *
58666 TACTGATGGCTTTGTGCCGATCATATTATCGTTACCGATGGCTGTGTGTCGGTCATTTCACTGT
1 TACTGATGGCTGTGTGCCGATCATATTA-CGTTACTGATGGCTTTGTGCCGATCATGT-ACCGT
* * ** *
58730 TACTGATGGCCGTGTGCCAATCATAACACTGCTACTGATGGCTTTGTGCCGATCATGTTACCGT
1 TACTGATGGCTGTGTGCCGATCATATTAC-GTTACTGATGGCTTTGTGCCGATCATG-TACCGT
** * *
58794 TACTGATGGCTGTGTGGTGATCATATCACTGATACTGATGG-TTTGTGC
1 TACTGATGGCTGTGTGCCGATCATATTAC-GTTACTGATGGCTTTGTGC
58842 TAATCACATT
Statistics
Matches: 142, Mismatches: 31, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
63 9 0.06
64 132 0.93
65 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (62 bp):
TACTGATGGCTGTGTGCCGATCATATTACGTTACTGATGGCTTTGTGCCGATCATGTACCGT
Found at i:58830 original size:32 final size:32
Alignment explanation
Indices: 58602--58834 Score: 184
Period size: 32 Copynumber: 7.3 Consensus size: 32
58592 GTTGCGATAC
* * **
58602 TACTGATGGCTTTGTGTCGATCATAGT-ACCAT
1 TACTGATGGCTGTGTGCCGATCATA-TCACTGT
* * * * *
58634 TATTGATGGCTTTGTACCGATCACAGT-ACCGT
1 TACTGATGGCTGTGTGCCGATCATA-TCACTGT
* *
58666 TACTGATGGCTTTGTGCCGATCATATTA-TCGT
1 TACTGATGGCTGTGTGCCGATCATATCACT-GT
* * * *
58698 TACCGATGGCTGTGTGTCGGTCATTTCACTGT
1 TACTGATGGCTGTGTGCCGATCATATCACTGT
* * * *
58730 TACTGATGGCCGTGTGCCAATCATAACACTGC
1 TACTGATGGCTGTGTGCCGATCATATCACTGT
* * * *
58762 TACTGATGGCTTTGTGCCGATCATGTTACCGT
1 TACTGATGGCTGTGTGCCGATCATATCACTGT
** *
58794 TACTGATGGCTGTGTGGTGATCATATCACTGA
1 TACTGATGGCTGTGTGCCGATCATATCACTGT
58826 TACTGATGG
1 TACTGATGG
58835 TTTGTGCTAA
Statistics
Matches: 160, Mismatches: 38, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
31 1 0.01
32 158 0.99
33 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.35
Consensus pattern (32 bp):
TACTGATGGCTGTGTGCCGATCATATCACTGT
Found at i:59040 original size:22 final size:21
Alignment explanation
Indices: 59012--59054 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
59002 TGTCCCCACA
*
59012 TGGTGTGTTGGGTTGGTTTGGG
1 TGGTGTGTT-GGTTGGATTGGG
59034 TGGTGTGTTGGTTGGATTGGG
1 TGGTGTGTTGGTTGGATTGGG
59055 ATGGGTTTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.02, C:0.00, G:0.53, T:0.44
Consensus pattern (21 bp):
TGGTGTGTTGGTTGGATTGGG
Found at i:75610 original size:25 final size:24
Alignment explanation
Indices: 75512--75610 Score: 65
Period size: 25 Copynumber: 4.0 Consensus size: 24
75502 TGTCATTAGG
* * *
75512 GCTTACCAATTCTTAGCTCATATGA
1 GCTTACCGATT-TCAGCTCGTATGA
* * *
75537 GCTTAACTATTGCAGCTCGTGA-GA
1 GCTTACCGATTTCAGCTCGT-ATGA
* * * *
75561 GCTTACTGATTCTTAGCTAGAATGA
1 GCTTACCGATT-TCAGCTCGTATGA
75586 GCTTACCGATTTACAGCTCGTATGA
1 GCTTACCGATTT-CAGCTCGTATGA
75611 ACATACATGT
Statistics
Matches: 54, Mismatches: 16, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
24 18 0.33
25 36 0.67
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (24 bp):
GCTTACCGATTTCAGCTCGTATGA
Found at i:83056 original size:25 final size:25
Alignment explanation
Indices: 83028--83078 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
83018 TATGACCTAT
*
83028 CCGATTTACAACTCATGAGAGCATA
1 CCGATTCACAACTCATGAGAGCATA
* * *
83053 CCGATTCACAGCTCGTGCGAGCATA
1 CCGATTCACAACTCATGAGAGCATA
83078 C
1 C
83079 ATGCATAGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (25 bp):
CCGATTCACAACTCATGAGAGCATA
Found at i:86338 original size:23 final size:23
Alignment explanation
Indices: 86303--86348 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
86293 ATATAAGAGG
*
86303 TAATTCCAACAAAATTAGAAACT
1 TAATACCAACAAAATTAGAAACT
* *
86326 TAATACCATCAAAATTAGCAACT
1 TAATACCAACAAAATTAGAAACT
86349 ATATATTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.50, C:0.20, G:0.04, T:0.26
Consensus pattern (23 bp):
TAATACCAACAAAATTAGAAACT
Found at i:108206 original size:27 final size:27
Alignment explanation
Indices: 108150--108239 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
108140 TGCGATTTGT
* ***
108150 GGGTAAGATGACCGAAATACCCTTGGA
1 GGGTAAAATGACCGAAATACCCTCAAA
108177 GGGTAAAATGACCGAAATACCCTCAAA
1 GGGTAAAATGACCGAAATACCCTCAAA
* ** * *
108204 GGGTAAAAGGATTGAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCTCAAA
108231 GGGTAAAAT
1 GGGTAAAAT
108240 AACTGTTATA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.18
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCTCAAA
Found at i:110575 original size:62 final size:62
Alignment explanation
Indices: 110509--110669 Score: 207
Period size: 62 Copynumber: 2.6 Consensus size: 62
110499 TCCAAAGCAT
** *
110509 GAACAGTGAGTTACACGGCCTGGGCACATGCCCGTGTCCCTGCCTA-TGTGGTCTTGTACCAC
1 GAACAGTGAGTTACACGGCCCAGACACATGCCCGTGTCCCTGCC-AGTGTGGTCTTGTACCAC
* * * *
110571 GAACAGTGAGTTACACGGCCCAGACACATGCCTGTGTCCTTGGCAGTGTGGTTTTGTACCAC
1 GAACAGTGAGTTACACGGCCCAGACACATGCCCGTGTCCCTGCCAGTGTGGTCTTGTACCAC
* * * *
110633 AAACAATGAGTTACACAGCCCAGACACATGTCCGTGT
1 GAACAGTGAGTTACACGGCCCAGACACATGCCCGTGT
110670 GCCTTGCCCG
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
61 1 0.01
62 85 0.99
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (62 bp):
GAACAGTGAGTTACACGGCCCAGACACATGCCCGTGTCCCTGCCAGTGTGGTCTTGTACCAC
Found at i:118446 original size:26 final size:27
Alignment explanation
Indices: 118401--118452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
118391 TAGCAAAATA
*
118401 AAATAAAAAGAAACTGAAGAAGAAAGG
1 AAATAAAAAGAAACTAAAGAAGAAAGG
*
118428 AAATAAAAA-AAATTAAAGAAGAAAG
1 AAATAAAAAGAAACTAAAGAAGAAAG
118453 AACTAACGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.71, C:0.02, G:0.17, T:0.10
Consensus pattern (27 bp):
AAATAAAAAGAAACTAAAGAAGAAAGG
Found at i:123595 original size:49 final size:49
Alignment explanation
Indices: 123531--123662 Score: 153
Period size: 49 Copynumber: 2.7 Consensus size: 49
123521 TAATAACATG
* *
123531 CCAAAGCCATGTCCCAGACATGGTATTACATGGGAAGTT-TC-TAGTAC-TA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGG-AGTTCTCATA-T-CGTA
* * *
123580 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATC-GTA
*
123630 CCCATGCCATGTCCCAGACATGGTCTTACATGG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGG
123663 AATCTCATTC
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
48 5 0.07
49 33 0.46
50 33 0.46
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (49 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGTA
Found at i:123653 original size:50 final size:49
Alignment explanation
Indices: 123531--123662 Score: 153
Period size: 50 Copynumber: 2.7 Consensus size: 49
123521 TAATAACATG
* *
123531 CCAAAGCCATGTCCCAGACATGGTATTACATGGGAAGTTTCTAGTACTA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGAAGTTTCTAGTACTA
* * *
123580 CCAATGCCATATCCCAGATATGGTCTTACATGGG-AG-TTCTCA-TATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGAAGTTTCT-AGTA-C--TA
*
123630 CCCATGCCATGTCCCAGACATGGTCTTACATGG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGG
123663 AATCTCATTC
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
47 6 0.08
48 4 0.06
49 30 0.42
50 31 0.44
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (49 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGAAGTTTCTAGTACTA
Found at i:129232 original size:22 final size:20
Alignment explanation
Indices: 129201--129242 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
129191 CTAGCACTTG
129201 TAAATGAAAACAATAAAAACCC
1 TAAATG-AAA-AATAAAAACCC
*
129223 TAAATTAAAAATAAAAACCC
1 TAAATGAAAAATAAAAACCC
129243 AAAGAGGCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 3 0.16
22 5 0.26
ACGTcount: A:0.64, C:0.17, G:0.02, T:0.17
Consensus pattern (20 bp):
TAAATGAAAAATAAAAACCC
Found at i:149440 original size:54 final size:54
Alignment explanation
Indices: 149353--149468 Score: 205
Period size: 54 Copynumber: 2.1 Consensus size: 54
149343 GCAAGATTAT
*
149353 TGTGATTAAACTGTTTCAAGGTAAGGATGCTTTGTTACCTCACGTAGTCTTTTA
1 TGTGCTTAAACTGTTTCAAGGTAAGGATGCTTTGTTACCTCACGTAGTCTTTTA
* *
149407 TGTGCTTAAATTGTTTCAAGTTAAGGATGCTTTGTTACCTCACGTAGTCTTTTA
1 TGTGCTTAAACTGTTTCAAGGTAAGGATGCTTTGTTACCTCACGTAGTCTTTTA
149461 TGTGCTTA
1 TGTGCTTA
149469 TTAAATCGAG
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (54 bp):
TGTGCTTAAACTGTTTCAAGGTAAGGATGCTTTGTTACCTCACGTAGTCTTTTA
Done.