Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2683
Parameters: 2 7 7 80 10 50 1000
Length:  150094

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5437--5479
19
2.3
19
84
8
52
30
11
30
27
1.92
7867--7915
13
3.8
13
87
12
75
24
12
0
63
1.29
7951--7998
12
3.9
12
94
2
78
14
2
8
75
1.13
7953--8001
13
3.8
13
89
2
73
12
2
10
75
1.13
8070--8200
65
2.0
66
90
1
210
23
12
26
37
1.90
11742--11806
11
6.0
11
90
3
105
15
7
9
67
1.40
17666--17766
52
1.9
52
94
4
177
26
19
20
32
1.97
26288--26334
20
2.3
20
85
0
67
21
12
36
29
1.91
40298--40349
27
1.9
27
92
0
86
21
21
15
42
1.89
42399--42432
18
1.9
18
88
5
52
23
20
0
55
1.43
42390--42456
29
2.4
28
82
9
84
13
19
0
67
1.23
43824--43876
6
8.8
6
75
8
54
5
15
3
75
1.13
43817--43875
18
3.3
17
80
15
66
6
15
5
72
1.23
46472--46589
55
2.1
55
84
6
159
25
22
13
38
1.90
47221--47267
20
2.3
20
92
0
76
31
17
29
21
1.96
48550--48590
15
2.7
16
74
11
50
7
26
0
65
1.18
48748--48786
15
2.4
15
87
12
51
10
20
2
66
1.33
49792--49826
13
2.7
13
95
0
61
17
2
5
74
1.14
50891--50997
56
1.9
56
86
3
153
26
21
12
40
1.88
51629--51675
20
2.3
20
92
0
76
31
17
29
21
1.96
53639--53692
23
2.4
22
77
20
58
9
20
1
68
1.27
57603--57654
10
5.7
10
72
19
51
7
9
5
76
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57603--57654
18
2.9
18
82
2
70
7
9
5
76
1.14
60571--60623
23
2.4
22
76
20
56
9
18
1
69
1.25
63531--63582
13
3.9
14
82
14
58
69
3
9
17
1.31
63537--63581
11
3.7
12
88
8
56
73
2
8
15
1.18
63536--63585
12
4.0
12
85
15
66
70
2
10
18
1.25
66689--66723
14
2.5
14
95
0
61
68
5
8
17
1.35
68264--68327
30
2.1
30
83
11
78
21
18
17
42
1.89
68254--68318
20
3.2
20
74
8
60
23
20
16
40
1.92
71019--71174
12
13.6
12
70
16
64
67
1
18
11
1.30
71031--71057
10
2.7
10
100
0
54
66
0
18
14
1.25
71051--71177
6
20.7
6
67
10
60
70
2
18
9
1.26
71041--71171
69
1.9
70
82
7
169
68
2
18
10
1.29
71108--71195
30
3.1
27
80
12
97
69
1
18
11
1.24
71192--71254
33
1.9
33
84
12
85
53
6
26
12
1.62
83190--83229
18
2.2
18
86
4
53
12
27
0
60
1.33
84284--84337
14
3.7
15
85
9
76
20
12
3
62
1.45
84375--84420
11
3.8
12
91
8
76
17
2
6
73
1.14
84378--84423
12
4.0
11
89
10
74
17
2
8
71
1.21
84377--84420
13
3.5
13
87
9
65
13
2
6
77
1.07
84375--84423
24
2.1
23
96
3
89
20
2
8
69
1.24
87214--87242
11
2.6
11
100
0
58
72
13
6
6
1.26
87308--87343
18
2.0
18
94
0
63
75
5
2
16
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88235--88293
21
2.8
21
87
5
75
71
0
22
6
1.09
88246--88293
15
3.3
14
82
5
60
77
0
18
4
0.93
93704--93743
18
2.2
18
86
4
53
12
27
0
60
1.33
93848--93876
12
2.5
12
94
5
51
0
13
6
79
0.93
94800--94837
12
3.0
13
85
14
53
23
10
0
65
1.23
94800--94833
13
2.5
14
95
4
61
17
8
0
73
1.08
94876--94922
13
3.9
12
83
8
60
12
6
10
70
1.33
94876--94923
12
4.0
12
81
8
53
12
6
12
68
1.37
103997--104043
23
2.1
23
84
7
62
51
12
4
31
1.59
106499--106549
13
3.8
13
81
2
57
74
7
3
13
1.18
106495--106549
14
4.1
14
83
6
62
69
10
5
14
1.35
106588--106637
13
3.8
13
84
5
64
66
2
10
22
1.32
106585--106637
27
2.0
27
92
0
88
62
1
11
24
1.39
116098--116152
21
2.4
22
76
14
58
41
16
16
25
1.88
124048--124111
22
3.0
21
88
6
92
29
4
34
31
1.78
130663--130703
17
2.4
18
80
8
50
14
24
4
56
1.58
130634--130687
24
2.2
25
78
15
60
11
22
3
62
1.43
136322--136357
15
2.4
16
90
9
58
5
19
0
75
1.00
136365--136410
19
2.4
19
82
13
58
6
15
2
76
1.09
136367--136410
20
2.2
20
88
8
63
6
13
2
77
1.07
138604--138646
12
3.9
11
84
9
52
13
6
4
74
1.19
138949--139012
22
3.0
21
88
6
92
29
4
34
31
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
144456--144504
21
2.4
20
83
10
55
46
24
4
24
1.69

Tables:   1

The End!