Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3010
Parameters: 2 7 7 80 10 50 1000
Length:  141545

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3861--4044
40
4.6
39
83
6
203
25
22
27
25
2.00
3861--4044
78
2.3
80
81
9
207
25
22
27
25
2.00
11771--11955
79
2.3
81
83
7
227
24
22
27
24
2.00
11772--11955
40
4.6
40
82
9
207
25
22
27
24
2.00
11824--11988
79
2.1
79
83
6
201
26
21
27
24
1.99
17440--17481
15
2.7
16
96
3
77
19
11
4
64
1.44
17519--17572
11
4.9
11
88
8
83
18
0
5
75
0.98
17519--17572
23
2.5
21
90
6
81
18
0
5
75
0.98
17519--17576
12
5.2
12
89
10
88
20
0
6
72
1.07
24896--24933
17
2.2
18
85
4
51
63
2
23
10
1.39
24915--24969
12
4.6
12
73
15
51
63
0
23
12
1.29
29425--29498
29
2.6
29
86
4
96
25
31
16
27
1.96
33747--34170
207
2.0
210
90
5
669
28
18
16
36
1.93
40846--40900
20
2.8
20
91
0
92
29
29
12
29
1.93
42648--42697
20
2.5
20
86
0
73
78
4
6
12
1.08
48349--48402
24
2.3
24
78
9
58
11
20
3
64
1.40
50661--50731
13
5.7
13
75
18
62
14
8
4
73
1.22
50661--50704
22
2.0
23
90
4
72
11
6
4
77
1.11
52395--52424
16
1.9
15
93
6
51
20
3
33
43
1.68
53313--53367
20
2.8
20
88
0
83
25
29
16
29
1.97
66431--66483
23
2.4
22
76
20
56
9
18
1
69
1.25
71278--71321
12
3.7
12
90
0
61
75
4
4
15
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71367--71434
30
2.2
31
87
7
95
75
1
11
11
1.13
87237--87284
12
4.0
12
97
0
87
72
8
0
18
1.08
87325--87381
15
3.7
15
88
6
87
63
5
12
19
1.47
92840--92887
16
3.4
16
68
31
54
27
4
16
52
1.62
92840--92889
26
1.9
26
100
0
100
30
4
16
50
1.63
94446--94497
27
1.9
27
92
0
86
42
15
21
21
1.89
95154--95208
21
2.4
22
76
14
58
25
16
16
41
1.88
104008--104063
9
5.7
10
75
10
53
76
7
8
7
1.15
104030--104064
11
3.4
11
84
15
56
77
8
5
8
1.13
105042--105079
13
2.8
13
82
17
51
73
0
18
7
1.06
104975--105082
6
17.5
6
70
9
74
71
2
18
7
1.22
107105--107156
27
1.9
27
92
0
86
42
15
21
21
1.89
107813--107867
21
2.4
22
76
14
58
25
16
16
41
1.88
108667--108716
26
1.9
26
88
8
75
58
8
10
24
1.57
120294--120346
23
2.4
22
76
20
56
9
18
1
69
1.25
123445--123750
151
2.0
153
96
2
573
27
23
16
32
1.96
125234--125277
16
2.7
16
89
3
70
25
9
2
63
1.35
125221--125279
15
3.6
16
81
9
66
25
11
3
59
1.48
128265--128309
20
2.2
20
84
7
56
51
11
6
31
1.63
136377--136429
23
2.4
22
76
20
56
9
18
1
69
1.25

Tables:   1

The End!