Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1232
Parameters: 2 7 7 80 10 50 1000
Length:  125048

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3065--3117
10
5.1
10
84
8
70
75
9
1
13
1.12
3065--3117
21
2.5
21
87
0
79
75
9
1
13
1.12
8056--8099
22
2.0
22
95
0
79
34
4
36
25
1.76
12288--12342
17
3.2
17
76
5
56
7
12
3
76
1.12
12293--12334
18
2.3
18
87
4
57
7
9
2
80
0.97
14544--14578
12
2.9
12
100
0
70
17
8
0
74
1.06
14892--14935
22
2.0
22
95
0
79
34
4
36
25
1.76
19736--19779
23
2.0
21
86
8
61
25
20
9
45
1.80
19885--19931
23
2.1
23
84
7
62
51
12
4
31
1.59
20817--20895
20
4.0
20
73
11
65
30
15
29
25
1.96
20816--20893
40
2.0
39
82
2
93
30
15
29
24
1.95
32428--32461
11
3.0
11
91
4
50
67
8
0
23
1.18
32506--32556
14
3.6
14
94
5
93
64
5
11
17
1.45
32505--32556
15
3.5
15
94
5
97
65
5
11
17
1.44
36601--36630
11
2.7
11
100
0
60
80
6
0
13
0.91
37561--37620
18
3.2
18
78
7
66
73
3
16
6
1.18
39656--39687
16
2.0
16
100
0
64
12
12
25
50
1.75
39874--40021
72
2.0
73
83
3
183
25
16
28
29
1.97
41979--42025
20
2.3
20
81
0
58
23
12
34
29
1.92
49849--49900
23
2.3
22
75
21
54
9
23
1
65
1.32
53553--53590
12
3.2
12
85
7
60
28
5
2
63
1.30
67914--67967
20
2.7
20
82
5
65
31
14
29
24
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75712--75758
25
1.9
24
91
4
76
53
10
17
19
1.72
80969--81008
3
13.3
3
84
10
55
67
0
0
32
0.91
80971--81022
12
4.1
12
81
16
52
69
1
0
28
0.99
81465--81540
21
3.7
21
80
7
102
36
11
10
40
1.76
81444--81534
21
4.3
20
80
8
85
39
13
8
38
1.75
81478--81541
19
3.3
19
86
4
83
37
14
9
39
1.78
81826--82353
132
4.0
132
94
0
912
24
25
19
30
1.98
81862--82310
44
10.2
44
63
7
113
24
24
19
30
1.98
85104--85217
55
2.1
55
85
5
149
25
21
14
39
1.90
85841--85895
20
2.8
20
88
0
83
29
16
29
25
1.97
87215--87277
12
5.2
12
75
21
60
11
22
0
66
1.22
88229--88289
26
2.3
27
88
2
88
13
8
3
75
1.15
88229--88289
27
2.3
26
83
10
79
13
8
3
75
1.15
88334--88389
13
4.5
13
86
4
71
14
3
3
78
1.02
88334--88389
12
4.6
12
78
10
60
14
3
3
78
1.02
90154--90438
132
2.2
132
94
0
489
24
25
19
29
1.98
91143--91195
23
2.4
22
76
20
56
9
18
3
67
1.33
92536--92577
17
2.5
17
84
7
50
16
2
9
71
1.23
94966--95006
17
2.4
17
95
4
73
21
9
4
63
1.44
95049--95106
12
4.7
12
91
4
89
17
5
1
75
1.06
96093--96139
23
2.1
23
84
7
62
51
12
4
31
1.59
96869--96921
13
4.2
13
82
4
63
67
11
5
15
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96961--96993
13
2.5
13
95
0
57
69
0
9
21
1.15
97930--97975
16
2.6
18
83
12
60
69
0
21
8
1.15
97931--97975
18
2.6
17
82
6
54
71
0
20
8
1.12
104727--104789
23
2.7
23
92
2
99
36
33
4
25
1.77
106603--106652
13
3.9
13
86
5
66
70
8
4
18
1.28
106603--106654
12
4.2
12
90
7
77
67
7
3
21
1.32
106691--106726
12
2.8
13
87
12
56
66
0
11
22
1.22
106695--106740
12
3.6
13
88
11
69
67
2
10
19
1.31
110660--110701
19
2.2
19
83
8
50
47
28
14
9
1.75
110867--110913
14
3.6
12
83
16
58
63
2
12
21
1.39
111854--111906
18
2.9
17
81
13
52
67
1
22
7
1.25
114483--114525
11
3.8
11
87
6
68
79
6
0
13
0.93
114483--114526
12
3.8
12
94
5
74
77
6
0
15
0.97
119096--119126
15
2.0
16
93
6
55
48
25
12
12
1.77
120035--120083
11
4.6
11
87
10
75
77
8
0
14
0.98
120036--120083
20
2.3
21
92
3
80
77
8
0
14
0.99
120125--120176
14
4.0
13
90
9
88
63
0
13
23
1.29
120125--120176
26
2.0
27
92
7
90
63
0
13
23
1.29
122375--122421
20
2.3
20
81
0
58
29
34
12
23
1.92
124380--124527
72
2.0
73
84
3
192
29
29
16
25
1.97
124714--124745
16
2.0
16
100
0
64
50
25
12
12
1.75

Tables:   1

The End!