genome.fa.s88.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3484
Parameters: 2 7 7 80 10 50 1000
Length:  35274

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1048--1224	27	6.6	26	83	6	178	27	15	27	29	1.96
1049--1203	81	1.9	80	86	3	222	27	16	27	29	1.97
2906--2938	17	2.0	17	88	5	50	48	3	15	33	1.60
9554--9590	14	2.6	14	86	0	56	40	10	0	48	1.38
9676--9721	20	2.4	19	82	7	65	28	0	13	58	1.35
9807--9850	20	2.3	19	80	4	52	15	2	11	70	1.26
12088--12185	24	4.2	24	68	13	69	38	12	12	36	1.80
12217--12299	23	3.6	23	70	3	76	36	6	18	39	1.75
12307--12675	54	6.8	53	78	3	272	37	14	20	27	1.91
12361--12681	53	5.9	52	76	11	222	37	13	20	28	1.91
17606--17716	47	2.4	47	84	6	154	35	23	16	25	1.95
18479--18535	4	14.2	4	100	0	114	0	24	0	75	0.80
24872--24979	46	2.4	45	80	10	123	35	23	15	25	1.94
25740--25771	4	8.2	4	93	6	57	0	25	0	75	0.81
25741--25771	15	2.1	15	100	0	62	0	25	0	74	0.82
26103--26138	12	2.8	14	88	12	51	50	8	2	38	1.47
32741--32834	29	3.4	27	76	16	95	28	24	7	39	1.82
32765--32834	29	2.5	27	84	8	104	27	25	5	41	1.78
32867--32990	27	4.6	29	77	9	95	40	20	7	31	1.80
32947--33044	27	3.7	26	75	6	81	43	19	5	31	1.72
33110--33169	25	2.3	27	82	5	79	36	21	21	20	1.95
33988--34056	24	2.8	26	76	14	74	26	23	23	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33988--34084	24	4.0	24	75	14	65	29	21	21	26	1.99
34292--34356	31	2.1	31	86	11	89	27	13	27	30	1.94

Tables:   1

The End!