Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1869
Parameters: 2 7 7 80 10 50 1000
Length:  105397

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
910--953
14
3.1
14
86
3
61
2
22
2
72
1.07
899--950
15
3.5
15
74
10
54
1
21
1
75
1.00
2603--2642
17
2.3
18
83
12
57
25
2
5
67
1.23
5264--5296
14
2.4
14
100
0
66
15
30
9
45
1.77
8642--8681
18
2.2
18
86
4
53
12
27
0
60
1.33
9733--9784
14
3.7
14
97
0
95
19
11
1
67
1.31
9822--9869
13
3.8
13
91
5
80
16
2
6
75
1.11
9825--9869
12
3.7
12
96
3
81
13
2
6
77
1.05
9822--9869
25
1.9
25
95
0
87
16
2
6
75
1.11
21909--21963
15
3.8
15
85
2
69
1
21
1
74
1.01
23479--23515
18
2.1
18
94
0
65
24
5
5
64
1.36
30401--30440
18
2.2
18
86
4
53
12
27
0
60
1.33
31489--31542
14
3.9
14
95
4
101
22
12
0
64
1.27
31489--31542
27
2.0
27
96
3
99
22
12
0
64
1.27
31579--31619
11
4.0
10
84
15
57
19
0
2
78
0.87
31582--31606
9
2.8
9
100
0
50
16
0
0
84
0.63
31591--31631
12
3.4
12
90
6
57
12
2
7
78
1.06
38013--38057
20
2.2
20
85
14
58
28
0
13
57
1.36
39774--39836
21
3.0
21
88
2
81
33
31
4
30
1.78
42376--42430
16
3.2
16
78
19
58
76
3
12
7
1.12
42364--42430
17
3.7
17
80
8
62
76
2
14
5
1.10
43830--43868
12
3.2
12
82
13
53
5
10
2
82
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43830--43876
24
2.0
23
87
4
67
4
10
2
82
0.88
43839--43895
22
2.7
21
83
8
62
3
12
3
80
0.96
43833--43892
21
2.6
22
76
15
59
5
15
3
76
1.08
45411--45454
20
2.2
20
87
0
61
25
9
34
31
1.87
48761--48823
21
3.0
21
88
2
81
33
31
4
30
1.78
49640--49711
23
3.1
23
82
4
83
37
30
2
29
1.72
52854--52893
18
2.2
18
86
0
53
65
2
25
7
1.32
55762--55817
28
2.0
28
86
6
78
30
5
10
53
1.58
59058--59104
23
2.1
23
84
7
62
51
12
4
31
1.59
65695--65725
12
2.6
12
100
0
62
6
12
6
74
1.21
69281--69321
21
2.0
21
95
0
73
14
2
2
80
0.92
69889--69945
10
5.7
10
76
15
64
29
28
14
28
1.95
69889--69947
19
3.0
19
82
7
73
28
27
13
30
1.94
76538--76577
11
3.7
11
80
6
55
15
5
2
77
1.04
77171--77227
10
5.7
10
76
15
64
29
28
14
28
1.95
77171--77229
19
3.0
19
82
7
73
28
27
13
30
1.94
84579--84619
17
2.4
18
80
8
50
14
24
4
56
1.58
91500--91546
14
3.6
13
91
8
78
80
6
2
10
0.96
93624--93678
15
3.8
14
80
7
65
74
1
21
1
1.01

Tables:   1

The End!