Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1687
Parameters: 2 7 7 80 10 50 1000
Length:  72752

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
837--883
23
2.1
23
84
7
62
51
12
4
31
1.59
6207--6248
17
2.6
16
85
7
57
21
14
4
59
1.53
6207--6248
16
2.6
16
84
3
57
21
14
4
59
1.53
6207--6244
15
2.5
15
87
12
51
21
13
5
60
1.52
6295--6338
11
4.0
11
90
0
70
20
2
4
72
1.13
7228--7274
23
2.1
23
84
7
62
51
12
4
31
1.59
11650--11780
40
3.3
39
83
4
163
29
26
19
24
1.98
11653--11832
80
2.3
80
81
10
192
28
27
20
24
1.99
15862--15926
10
6.5
10
71
13
53
24
21
15
38
1.92
15862--15915
20
2.7
20
85
0
72
25
20
16
37
1.93
15862--15935
30
2.5
30
84
8
80
22
20
17
39
1.92
15862--15926
20
3.2
20
73
16
62
24
21
15
38
1.92
23640--23669
15
1.9
16
93
6
53
66
0
20
13
1.24
26039--26118
12
6.4
12
70
17
56
76
2
12
8
1.11
28543--28577
18
1.9
18
88
11
54
57
0
20
22
1.41
35157--35210
20
2.7
20
82
0
63
24
20
18
37
1.94
35157--35230
30
2.5
30
86
8
98
21
20
18
39
1.93
35157--35221
20
3.2
20
71
16
53
23
21
16
38
1.93
40574--40598
13
1.9
13
100
0
50
68
0
16
16
1.22
42829--42867
16
2.4
17
82
4
53
58
5
20
15
1.55
47024--47089
33
2.0
33
82
8
80
33
16
22
27
1.96
50256--50319
14
4.6
14
77
7
69
82
3
1
12
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50266--50319
13
3.7
15
82
12
76
81
3
1
12
0.91
50256--50319
29
2.3
26
92
7
101
82
3
1
12
0.85
50363--50389
14
1.9
14
100
0
54
85
0
14
0
0.61
50366--50444
32
2.4
32
83
10
106
77
2
11
8
1.09
51330--51375
20
2.2
20
84
3
56
65
0
26
8
1.21
51382--51417
12
3.0
12
87
0
54
33
0
25
41
1.55
55378--55414
13
2.7
13
91
8
56
72
0
5
21
1.04
55886--55922
12
3.1
12
88
0
56
13
8
2
75
1.13
55898--55956
13
4.2
13
74
16
55
16
6
5
71
1.26
60331--60369
10
3.8
10
89
3
60
87
0
10
2
0.65
69937--69980
20
2.2
20
84
8
54
75
0
15
9
1.05
71196--71221
6
4.3
6
100
0
52
84
0
0
15
0.62

Tables:   1

The End!