genome.fa.s890.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1277
Parameters: 2 7 7 80 10 50 1000
Length:  53533

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3764--4055	42	6.9	42	78	9	292	18	28	33	19	1.95
4264--4342	24	3.3	24	85	5	106	6	37	35	20	1.78
4347--5490	43	26.9	43	78	8	977	16	31	34	17	1.92
4347--5490	213	5.4	212	79	6	1011	16	31	34	17	1.92
4347--5490	85	13.5	86	82	5	1036	16	31	34	17	1.92
10135--10228	48	2.0	48	83	12	122	38	27	13	20	1.90
12522--12615	48	2.0	48	83	12	122	38	27	13	20	1.90
13155--13186	14	2.3	14	100	0	64	31	46	15	6	1.71
18278--18309	14	2.3	14	100	0	64	31	46	15	6	1.71
23397--23428	14	2.3	14	100	0	64	31	46	15	6	1.71
28518--28549	14	2.3	14	100	0	64	31	46	15	6	1.71
29852--30143	42	6.9	42	78	9	292	18	28	33	19	1.95
30352--30430	24	3.3	24	85	5	106	6	37	35	20	1.78
30435--31443	43	23.9	43	78	6	985	16	32	33	17	1.93
30435--31443	85	12.0	84	82	5	721	16	32	33	17	1.93
30506--31443	298	3.2	299	86	4	1200	16	32	33	17	1.93
31372--31450	34	2.3	34	93	2	131	7	35	37	18	1.80
31448--31499	25	2.1	25	92	0	86	9	21	51	17	1.73
31485--31577	42	2.2	44	90	3	145	12	27	39	19	1.88
38728--38821	48	2.0	48	87	8	138	40	27	12	19	1.88
41100--41193	48	2.0	48	87	8	138	40	27	12	19	1.88
42445--42736	42	6.9	42	80	9	319	17	28	34	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42945--43023	24	3.3	24	85	5	106	6	37	35	20	1.78
43028--44037	43	23.9	43	77	7	969	16	32	33	17	1.93
43028--44037	85	12.0	86	82	4	969	16	32	33	17	1.93
43099--43832	299	2.5	298	91	2	1174	16	32	32	17	1.93
43966--44044	34	2.3	34	93	2	131	7	35	37	18	1.80
44043--44091	25	2.0	25	91	0	80	12	22	46	18	1.82
44079--44171	42	2.2	44	90	3	145	12	27	39	19	1.88
52072--52363	42	6.9	42	80	9	319	17	28	34	19	1.95
52571--52649	24	3.3	24	85	5	106	6	37	35	20	1.78
52654--53498	43	19.9	43	78	6	828	16	32	33	18	1.93
52654--53498	85	9.9	85	82	5	754	16	32	33	18	1.93
52725--53457	298	2.5	298	91	2	1161	16	32	32	18	1.93

Tables:   1

The End!