Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold239_ERROPOS7105312+
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49719
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Found at i:4721 original size:21 final size:21
Alignment explanation
Indices: 4695--4770 Score: 120
Period size: 21 Copynumber: 3.7 Consensus size: 21
4685 AATCATATCT
4695 TCTAAGATTGTATATATCATA
1 TCTAAGATTGTATATATCATA
*
4716 TCTAAGATTGCATATATCATA
1 TCTAAGATTGTATATATCATA
*
4737 TCTAAGATTG--CATATCATA
1 TCTAAGATTGTATATATCATA
4756 TCTAAGATTGTATAT
1 TCTAAGATTGTATAT
4771 CCTCAAAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 18 0.36
21 32 0.64
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.41
Consensus pattern (21 bp):
TCTAAGATTGTATATATCATA
Found at i:4730 original size:19 final size:19
Alignment explanation
Indices: 4708--4771 Score: 101
Period size: 19 Copynumber: 3.3 Consensus size: 19
4698 AAGATTGTAT
4708 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
4727 ATATATCATATCTAAGATTGC
1 --ATATCATATCTAAGATTGC
*
4748 ATATCATATCTAAGATTGT
1 ATATCATATCTAAGATTGC
4767 ATATC
1 ATATC
4772 CTCAAAAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
19 23 0.55
21 19 0.45
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (19 bp):
ATATCATATCTAAGATTGC
Found at i:11289 original size:32 final size:32
Alignment explanation
Indices: 11252--11378 Score: 152
Period size: 32 Copynumber: 4.0 Consensus size: 32
11242 CCATAAGTAC
* *
11252 AGTAATATGATTGGCACAAAGCCATCAGTAGT
1 AGTAATATGATCGGCACAAAGCCATCAGTAGA
*
11284 AGTAATATGATCGGTACAAAGCCATCAGTAGA
1 AGTAATATGATCGGCACAAAGCCATCAGTAGA
*
11316 AGTGATATGATCGGCACACAA-CCTAT-AGTA-A
1 AGTAATATGATCGGCACA-AAGCC-ATCAGTAGA
* *
11347 CAGTAATATGACCGGTACAAAGCCATCAGTAG
1 -AGTAATATGATCGGCACAAAGCCATCAGTAG
11379 CATCGGAGCA
Statistics
Matches: 81, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
31 5 0.06
32 72 0.89
33 4 0.05
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.22
Consensus pattern (32 bp):
AGTAATATGATCGGCACAAAGCCATCAGTAGA
Found at i:11414 original size:26 final size:26
Alignment explanation
Indices: 11385--11458 Score: 139
Period size: 26 Copynumber: 2.8 Consensus size: 26
11375 GTAGCATCGG
11385 AGCAAAGCTGCCAGCAACAGTACCGT
1 AGCAAAGCTGCCAGCAACAGTACCGT
11411 AGCAAAGCTGCCAGCAACAGTACCGT
1 AGCAAAGCTGCCAGCAACAGTACCGT
*
11437 AGCAAAGCTGCCAGTAACAGTA
1 AGCAAAGCTGCCAGCAACAGTA
11459 TATGTGGCCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.36, C:0.28, G:0.23, T:0.12
Consensus pattern (26 bp):
AGCAAAGCTGCCAGCAACAGTACCGT
Found at i:11605 original size:24 final size:24
Alignment explanation
Indices: 11574--11632 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
11564 GTCATGCTCA
*
11574 AAATCAGTCATA-CAATTCACAGAC
1 AAATCAGTCATACCAA-TCACAAAC
11598 AAATCAGTCATACCAATCACAAAC
1 AAATCAGTCATACCAATCACAAAC
11622 AAATCAGTCAT
1 AAATCAGTCAT
11633 TTACATCTCG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 30 0.91
25 3 0.09
ACGTcount: A:0.47, C:0.25, G:0.07, T:0.20
Consensus pattern (24 bp):
AAATCAGTCATACCAATCACAAAC
Found at i:11844 original size:27 final size:27
Alignment explanation
Indices: 11748--11844 Score: 133
Period size: 27 Copynumber: 3.6 Consensus size: 27
11738 AAACAGAGGT
*
11748 ATTACAATCATTTTAC-CTACAAGGGC
1 ATTACAATCATTTTACACTACAGGGGC
* ** *
11774 ATCACGGTCATTTTACCCTACAGGGGC
1 ATTACAATCATTTTACACTACAGGGGC
*
11801 ATTACGATCATTTTACACTACAGGGGC
1 ATTACAATCATTTTACACTACAGGGGC
11828 ATTACAATCATTTTACA
1 ATTACAATCATTTTACA
11845 AATATTGGAC
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
26 13 0.21
27 49 0.79
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (27 bp):
ATTACAATCATTTTACACTACAGGGGC
Found at i:23576 original size:24 final size:23
Alignment explanation
Indices: 23528--23573 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
23518 TATATACTAC
*
23528 TTTTTAAAATAGTAAATTTTAAT
1 TTTTTAAAATAGTAAATTATAAT
*
23551 TTTTTATAATAAGTAACATTATA
1 TTTTTAAAAT-AGTAA-ATTATA
23574 TTTCATATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.47
24 5 0.26
25 5 0.26
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (23 bp):
TTTTTAAAATAGTAAATTATAAT
Found at i:23652 original size:15 final size:15
Alignment explanation
Indices: 23632--23661 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23622 TAATCTAACA
23632 TAATTACATTTATAT
1 TAATTACATTTATAT
*
23647 TAATTATATTTATAT
1 TAATTACATTTATAT
23662 AGTTTCATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (15 bp):
TAATTACATTTATAT
Found at i:25843 original size:9 final size:9
Alignment explanation
Indices: 25829--25862 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
25819 TGTGTAAATA
25829 TAATATAAT
1 TAATATAAT
25838 TAATATAAT
1 TAATATAAT
25847 TAATAT-A-
1 TAATATAAT
25854 TAATATAAT
1 TAATATAAT
25863 AAGAGATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 6 0.26
8 2 0.09
9 15 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
TAATATAAT
Found at i:25850 original size:4 final size:5
Alignment explanation
Indices: 25825--25933 Score: 52
Period size: 5 Copynumber: 21.6 Consensus size: 5
25815 ATGATGTGTA
*
25825 AATAT AATAT AAT-T AATAT AAT-T AATATAT AATAT AATA- AGAGAT
1 AATAT AATAT AATAT AATAT AATAT -A-ATAT AATAT AATAT A-ATAT
* * * *
25870 AAGA- AA-AT AATGCA- AATAG AATAT TATAT GAAATAT AATA- AAAATT
1 AATAT AATAT AAT--AT AATAT AATAT AATAT --AATAT AATAT AATA-T
25916 AATAT AATAT AATAT AAT
1 AATAT AATAT AATAT AAT
25934 TATTTTTTTG
Statistics
Matches: 83, Mismatches: 6, Indels: 30
0.70 0.05 0.25
Matches are distributed among these distances:
3 1 0.01
4 14 0.17
5 52 0.63
6 10 0.12
7 6 0.07
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.34
Consensus pattern (5 bp):
AATAT
Found at i:37623 original size:313 final size:313
Alignment explanation
Indices: 37055--39646 Score: 4502
Period size: 313 Copynumber: 8.3 Consensus size: 313
37045 TTATACTTCC
* *
37055 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTCAGAAGAATAGGAAACAATGAGAGGAGA
1 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
* *
37120 ATAAAGAAAATCGAAATGGGAAAACAATTACTATGCTAAGGAAAACACACGGCCAACAAGAGAAC
66 ATAAAGAAAATCGAAACGGGAAAACAATTACTATCCTAAGGAAAACACACGGCCAACAAGAGAAC
* * * * * *
37185 GACACATTAAGCCAGTATTAGAAAGCACATACCCATTTGCTCCTAACAATCAGCTAACCAAATGA
131 TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATCAGCCAACCAAATGA
* * *
37250 ATTGAACTCAATCAACCCATAAGAGAAGAATAGATGCGGTACTTCAGAGGCCGGAGAAATGACTT
196 ATTGAACTCAATCAACCCATAAGAGAAGAACAGATGCGGCACTTCAGAGGCTGGAGAAATGACTT
*
37315 GTTAGAACGCTTGTAGGTCGAAATGTTTGATCGATAGAGAAGGGAAAAAGAAT
261 GTTAGAACGCTTGTAGGTCGAAACGTTTGATCGATAGAGAAGGGAAAAAGAAT
37368 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
1 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
* *
37433 ATAAAGAAAATTGAAACGGGAAAACAATTACTATCCTAATGAAAACACACGGCCAACAAGAGAAC
66 ATAAAGAAAATCGAAACGGGAAAACAATTACTATCCTAAGGAAAACACACGGCCAACAAGAGAAC
*
37498 TACACATTCAACCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATCAGCCAACCAAATGA
131 TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATCAGCCAACCAAATGA
*
37563 ATTGAACTCAATCAACCCATAAGAGAAGAACAGATGTGGCACTTCAGAGGCTGGAGAAATGACTT
196 ATTGAACTCAATCAACCCATAAGAGAAGAACAGATGCGGCACTTCAGAGGCTGGAGAAATGACTT
*
37628 GTTAGAACGCTTGTAGGTCGAAACGTTTGATCGATAGAGAAGGGAAAAAGATT
261 GTTAGAACGCTTGTAGGTCGAAACGTTTGATCGATAGAGAAGGGAAAAAGAAT
* *
37681 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAATGAGAAGAGA
1 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
* *
37746 ATAAAGAAAATCGAAACGGGAACACAATTACAATCCTAAGGAAAACACACGGCCAACAAGAGAAC
66 ATAAAGAAAATCGAAACGGGAAAACAATTACTATCCTAAGGAAAACACACGGCCAACAAGAGAAC
*
37811 TACACATTCAACCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATCAGCCAACCAAATGA
131 TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATCAGCCAACCAAATGA
* * * *
37876 ATTGAACTCAATCAACCCATAAGAGAAGAATAGATGCGGTAATTCAGAGGCCGGAGAAATGACTT
196 ATTGAACTCAATCAACCCATAAGAGAAGAACAGATGCGGCACTTCAGAGGCTGGAGAAATGACTT
* *
37941 GTTAGAACGCTTGTAGGTCGAAATGTTTGATCGATAGAGAAGGGAAAAAGATT
261 GTTAGAACGCTTGTAGGTCGAAACGTTTGATCGATAGAGAAGGGAAAAAGAAT
*
37994 GAAGGCAAAGATAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
1 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
* * * *
38059 ACAAAGAAAATCGAAATGGGAAAACAATTACTATCGTAATGAAAACACACGGCCAACAAGAGAAC
66 ATAAAGAAAATCGAAACGGGAAAACAATTACTATCCTAAGGAAAACACACGGCCAACAAGAGAAC
*
38124 TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAAGAATCAGCCAACCAAATGA
131 TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATCAGCCAACCAAATGA
* *
38189 ATTGAACTCAATCAACTCATAAGAGAAGAACAAATGCGGCACTTCAGAGGCTGGAGAAATGACTT
196 ATTGAACTCAATCAACCCATAAGAGAAGAACAGATGCGGCACTTCAGAGGCTGGAGAAATGACTT
* *
38254 GTTAGAACGCTTGTAGGTCGAAACGTTTGATCGTTAGAGAAGGGAAAAAGATT
261 GTTAGAACGCTTGTAGGTCGAAACGTTTGATCGATAGAGAAGGGAAAAAGAAT
38307 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
1 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
38372 ATAAAGAAAATCGAAACGGGAAAACAATTACTATCCTAAGGAAAACACACGGCCAACAAGAGAAC
66 ATAAAGAAAATCGAAACGGGAAAACAATTACTATCCTAAGGAAAACACACGGCCAACAAGAGAAC
*
38437 TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATCAGCCAGCCAAATGA
131 TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATCAGCCAACCAAATGA
* *
38502 ATTGAACTTAATCAACCCATAAGAGAAGAACAGATGCGGTACTTCAGAGGCTGGAGAAATGACTT
196 ATTGAACTCAATCAACCCATAAGAGAAGAACAGATGCGGCACTTCAGAGGCTGGAGAAATGACTT
* *
38567 GTTAGAACGCTTGTAGGTCAAAATGTTTGATCGATAGAGAAGGGAAAAAGAAT
261 GTTAGAACGCTTGTAGGTCGAAACGTTTGATCGATAGAGAAGGGAAAAAGAAT
38620 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
1 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
* **
38685 ATAAAGAAAATCGAAACGGGAAAACAATTACTATCCTAATGAAAACACATTGCCAACAAGAGAAC
66 ATAAAGAAAATCGAAACGGGAAAACAATTACTATCCTAAGGAAAACACACGGCCAACAAGAGAAC
* * *
38750 TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAAGAAGCAGCCAACCAAATGG
131 TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATCAGCCAACCAAATGA
*
38815 ATTGAACTCAATCAACCCATAAGAGAAGAACAGATGCGGCACTTCAGAGGGTGGAGAAATGACTT
196 ATTGAACTCAATCAACCCATAAGAGAAGAACAGATGCGGCACTTCAGAGGCTGGAGAAATGACTT
* *
38880 GTTAGAACGCTTGTAGGTCGAAACGTTTGATCGATAGGGAA-GGAAAAATAAT
261 GTTAGAACGCTTGTAGGTCGAAACGTTTGATCGATAGAGAAGGGAAAAAGAAT
* * *
38932 GACGGCAAAGAAAGAGAAGTTGAATCCGGCTCACTTTAAGAAGAATAGGAAATAGTGAGAGGAGA
1 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
* *
38997 ATAAAGAAAATCGAAACGGGAAAACAATTACTATCCTAAGGAAAACACACGACCAACAAGTGAAC
66 ATAAAGAAAATCGAAACGGGAAAACAATTACTATCCTAAGGAAAACACACGGCCAACAAGAGAAC
39062 TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATCAGCCAACCAAATGA
131 TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATCAGCCAACCAAATGA
* *
39127 ATTGAACTCAATCAACCCATAAGAGAAGAACAGATGTGGTACTTCAGAGGCTGGAGAAATGACTT
196 ATTGAACTCAATCAACCCATAAGAGAAGAACAGATGCGGCACTTCAGAGGCTGGAGAAATGACTT
* *
39192 GTTAGAATGCTTGTAGGTCGAAATGTTTGATCGATAGAGAAGGGAAAAAGAAT
261 GTTAGAACGCTTGTAGGTCGAAACGTTTGATCGATAGAGAAGGGAAAAAGAAT
*
39245 GAAGGCAAAGAAAGAGAAGTTGAATCTGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
1 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
* *
39310 ATAAAGAAAATCGAAATGGGAAAACAATTACTATCCTAATGAAAACACACGGCCAACAAGAGAAC
66 ATAAAGAAAATCGAAACGGGAAAACAATTACTATCCTAAGGAAAACACACGGCCAACAAGAGAAC
* * *
39375 TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATTAGCTAAGCAAATGA
131 TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATCAGCCAACCAAATGA
* *
39440 ATTGAACTCAATCAACCCATAAGAGAAGAATAGATGCGGCACTTCGGAGGCTGGAGAAATGACTT
196 ATTGAACTCAATCAACCCATAAGAGAAGAACAGATGCGGCACTTCAGAGGCTGGAGAAATGACTT
* *
39505 GATAGAACGCTTGTAGGTCGAAACATTTGATCGATAGAGAAGGGAAAAAGAAT
261 GTTAGAACGCTTGTAGGTCGAAACGTTTGATCGATAGAGAAGGGAAAAAGAAT
*
39558 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAAAAGAATAGGAAACAGTGAGAGGAGA
1 GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
*
39623 ATAAAGGAAATCGAAACGGGAAAA
66 ATAAAGAAAATCGAAACGGGAAAA
39647 ACACCCAAAA
Statistics
Matches: 2158, Mismatches: 120, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
312 294 0.14
313 1864 0.86
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.18
Consensus pattern (313 bp):
GAAGGCAAAGAAAGAGAAGTTGAATCCGGCTCACATTAAGAAGAATAGGAAACAGTGAGAGGAGA
ATAAAGAAAATCGAAACGGGAAAACAATTACTATCCTAAGGAAAACACACGGCCAACAAGAGAAC
TACACATTCAGCCAGTATTTGAAAGCACATAACCACTTGCTCCTAACAATCAGCCAACCAAATGA
ATTGAACTCAATCAACCCATAAGAGAAGAACAGATGCGGCACTTCAGAGGCTGGAGAAATGACTT
GTTAGAACGCTTGTAGGTCGAAACGTTTGATCGATAGAGAAGGGAAAAAGAAT
Found at i:43479 original size:17 final size:18
Alignment explanation
Indices: 43439--43480 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
43429 ATATTATAAA
* *
43439 TATTTATTAGATATATTT
1 TATTTATTAGAAATAATT
43457 TA-TTATTA-AAATAATT
1 TATTTATTAGAAATAATT
43473 TATTTATT
1 TATTTATT
43481 TTAATTAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 8 0.38
17 11 0.52
18 2 0.10
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TATTTATTAGAAATAATT
Found at i:47313 original size:43 final size:42
Alignment explanation
Indices: 47188--47505 Score: 177
Period size: 43 Copynumber: 7.4 Consensus size: 42
47178 TTTTAGAAAT
* * * * **
47188 AAACGCCGCTAAAGAACAAAGGCCTTTAGCGACGCTATTCTGAC
1 AAACGCCGCTAAAG-ACCATGACC-TTAGCGACGCTTTTCCCAC
* *
47232 AAAACGCCTGC-ATAG-CCATGAACCCTTTAGCGGCGCTTTTACCCAC
1 -AAACGCC-GCTAAAGACCATG-A-CC-TTAGCGACGCTTTT-CCCAC
* *
47278 AAGCGCCGCTAAAGACCATGACCTTAACGACGCTTTTTTCCCA-
1 AAACGCCGCTAAAGACCATGACCTTAGCGACGC--TTTTCCCAC
* * * * *
47321 AAACGTCC-CT-AAGAACCATGACTTTAGTGGCACTTTTCCAAC
1 AAACG-CCGCTAAAG-ACCATGACCTTAGCGACGCTTTTCCCAC
* *
47363 AAACGCCGCTAAAGACCATGAACAATTAGCGACGCTTCTCCCAC
1 AAACGCCGCTAAAGACCATG-AC-CTTAGCGACGCTTTTCCCAC
* * *
47407 AAACGCCG-TTAAGACCAAGACCTTTAGCGGCGC-TTT-CCAC
1 AAACGCCGCTAAAGACCATGACC-TTAGCGACGCTTTTCCCAC
** * * *
47447 AAACAACGCTAAAG-CTAATGACCTTTAGCGGCGATTTTCCCAAC
1 AAACGCCGCTAAAGAC-CATGACC-TTAGCGACGCTTTTCCC-AC
*
47491 AAACGCCTCTAAAGA
1 AAACGCCGCTAAAGA
47506 AATGTCTTTA
Statistics
Matches: 212, Mismatches: 39, Indels: 44
0.72 0.13 0.15
Matches are distributed among these distances:
40 11 0.05
41 30 0.14
42 30 0.14
43 47 0.22
44 45 0.21
45 39 0.18
46 10 0.05
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (42 bp):
AAACGCCGCTAAAGACCATGACCTTAGCGACGCTTTTCCCAC
Found at i:47444 original size:85 final size:84
Alignment explanation
Indices: 47255--47460 Score: 215
Period size: 85 Copynumber: 2.4 Consensus size: 84
47245 AGCCATGAAC
* * *
47255 CCTTTAGCGGCGCTTTTACCCACAAGCGCCGCTAAAGACCATGACCTTAACGACGCTTTTTTCCC
1 CCTTTAGCGGCGCTTTT--CCACAAACGCCGCTAAAGACCATGACATTAACGACGC-TTTCTCCC
*
47320 AAAACGTCCCTAAGAACCATGA
63 AAAACGTCCCTAAGAACCAAGA
* * *
47342 -CTTTAGTGGCACTTTTCCAACAAACGCCGCTAAAGACCATGAACAATTAGCGACGC-TTCTCCC
1 CCTTTAGCGGCGCTTTTCC-ACAAACGCCGCTAAAGACCATG-AC-ATTAACGACGCTTTCTCCC
*
47405 ACAAACG-CCGTTAAG-ACCAAGA
63 A-AAACGTCC-CTAAGAACCAAGA
**
47427 CCTTTAGCGGCGC-TTTCCACAAACAACGCTAAAG
1 CCTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAG
47461 CTAATGACCT
Statistics
Matches: 101, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
84 16 0.16
85 41 0.41
86 35 0.35
87 9 0.09
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (84 bp):
CCTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAGACCATGACATTAACGACGCTTTCTCCCAAA
ACGTCCCTAAGAACCAAGA
Done.