Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 1 of 250
Found at i:1105 original size:42 final size:42
Alignment explanation
Indices: 1001--1250 Score: 269
Period size: 42 Copynumber: 5.9 Consensus size: 42
991 GAGCCTCCAT
* *
1001 CACCTTGGTGGCTCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* *
1044 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* * *
1087 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** *
1129 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
1171 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAGCACCATCGG
1213 CACCTTGGTGCTTGGATGTGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCTTGGATGTGCGGGAGCC-TCGAGCACCA
1251 AAGCTAAAGT
Statistics
Matches: 173, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
41 17 0.10
42 102 0.59
43 44 0.25
44 10 0.06
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:1486 original size:24 final size:24
Alignment explanation
Indices: 1459--1537 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
1449 CCGGTTAGGT
*
1459 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
1483 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
1507 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
1531 TTCCGGT
1 TCCCGGT
1538 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:1739 original size:43 final size:43
Alignment explanation
Indices: 1542--2552 Score: 985
Period size: 43 Copynumber: 23.9 Consensus size: 43
1532 TCCGGTAGCA
1542 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
1585 T-GGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
1627 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
1668 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
1711 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
1753 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
1796 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
1838 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
1881 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
1924 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
1967 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
2010 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
2052 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
2095 TATGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
2137 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
2180 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
2223 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
2266 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * *
2308 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
2351 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
2393 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * **
2436 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
2479 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
2513 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
2553 CCTTGGTGGC
Statistics
Matches: 784, Mismatches: 152, Indels: 66
0.78 0.15 0.07
Matches are distributed among these distances:
34 24 0.03
35 2 0.00
36 1 0.00
37 3 0.00
38 1 0.00
39 1 0.00
40 4 0.01
41 10 0.01
42 276 0.35
43 462 0.59
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:1768 original size:85 final size:86
Alignment explanation
Indices: 1542--2552 Score: 985
Period size: 85 Copynumber: 12.0 Consensus size: 86
1532 TCCGGTAGCA
** * *
1542 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
1605 GCCCCGGACACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* ** * * ** *
1627 TAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGA
1689 GCCTCGGGCACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
1711 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGA
* **
1774 GCCTCGGACACTGTCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * ** *
1796 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
1859 ACCTCGCGTACCATCGGCAACC
65 GCCTCGGGCACCATCGGCAACC
* * * *
1881 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* **
1946 CCTCGGCCACCATCGGCAAAA
66 CCTCGGGCACCATCGGCAACC
* *
1967 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
2032 CCTCGGCCACCATCGGC-ACC
66 CCTCGGGCACCATCGGCAACC
* ** * * * ** *
2052 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTATGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
*
2116 GCCTCGAGCACCATCGGC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * * * *
2137 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
2201 GGCTCGGGCACCATCGGCAAAC
65 GCCTCGGGCACCATCGGCAACC
* **
2223 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
2288 CCTCGGCCACCATCGGC-TCC
66 CCTCGGGCACCATCGGCAACC
** * * *
2308 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
2372 GCCTCGAGCACCATCGAC-ACC
65 GCCTCGGGCACCATCGGCAACC
* ** * * * *
2393 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * **
2457 GGCTCGGGCACCATCGGTAAAA
65 GCCTCGGGCACCATCGGCAACC
* *
2479 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--TCGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
2535 CCTCGGGCACCATCGGCA
66 CCTCGGGCACCATCGGCA
2553 CCTTGGTGGC
Statistics
Matches: 784, Mismatches: 128, Indels: 36
0.83 0.14 0.04
Matches are distributed among these distances:
77 35 0.04
79 1 0.00
80 1 0.00
82 1 0.00
83 7 0.01
84 71 0.09
85 466 0.59
86 202 0.26
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (86 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATCGGCAACC
Found at i:2075 original size:256 final size:253
Alignment explanation
Indices: 1555--2583 Score: 1042
Period size: 256 Copynumber: 4.1 Consensus size: 253
1545 GCCCTTGGTC
* ** * *
1555 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TGGTGCTAGGAT-GTGC-AGGAGCCCCG-GACAC
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTTGGCCCTTGG-TCGTGCGA-GAGCCTCGAG-CAC
* * * * ** **
1616 CATCGGCAAACTAAGCCCTTGGTAT-TGCGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCG
63 CATCGGC-ACCTAGGCCCTTGG-ATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTT-G
* * ** *
1679 AT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGGCAC
125 GTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * ** * * ** **
1743 CATCGGCACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG
190 CATCGGCAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGTGC-TGG
1807 -T
252 AT
** * * *
1808 CGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTCGCGTAC
1 -GTGCGGGAGCCTCGGA-CACCATCGGCAACCTTGGCCCTTGG-TCGTGCGAGAGCCTCGAGCAC
** *
1870 CATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTG
63 CATCGGC-ACCTAGGCCCTTGGAT-GTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTG
* * *
1934 GTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGACAC
125 GTCGTGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* *
1999 CATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTCGGTGCTATGA
190 CATCGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGA
2064 T
253 T
* ** *
2065 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAT-GCCCTTGGTCGTGCGGGAGCCTCGAGCACCA
1 GTGCGGGAGCCTCGGACACCATCGGCAACCT-TGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCA
* ** * * * *
2129 TCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCG
65 TCGGCACCTAGGCCCTTGGATGTGCG-GAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCG
* * *
2194 TGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
129 TGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* *
2259 GGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCTCCTAGGTGCTGGGAT
194 GGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCT-GGAT
* * *
2321 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTTGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
* * **
2386 CGACACCTTGGTGCTTGGATGTGCCGGAACCTCGGGCACCATCGGCAACCT-AGACCCTTGGTCG
66 CGGCACCTAGGCCCTTGGATGTG-CGGAACCTCGGGCACCATCGGCAACCTAAG-CCCTTGGTCG
* * *
2450 TGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C
129 TGCGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
2511 --C-A-TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGAT
194 GGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGT-GCT-GGAT
2569 GTGCGGGAGCCTCGG
1 GTGCGGGAGCCTCGG
2584 TGGCTAGGAG
Statistics
Matches: 672, Mismatches: 81, Indels: 50
0.84 0.10 0.06
Matches are distributed among these distances:
247 43 0.06
248 23 0.03
250 1 0.00
252 2 0.00
253 7 0.01
254 70 0.10
255 26 0.04
256 431 0.64
257 68 0.10
258 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (253 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTTGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCAT
CGGCACCTAGGCCCTTGGATGTGCGGAACCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGTG
CGAGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
CAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCTGGAT
Found at i:2377 original size:299 final size:299
Alignment explanation
Indices: 1613--2347 Score: 1192
Period size: 299 Copynumber: 2.5 Consensus size: 299
1603 GAGCCCCGGA
** * ** * **
1613 CACCATCGGCAAACTAAGCCCTTGGTATTGC-GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * * *
1676 TCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGG
66 T-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
1740 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
* *
1805 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCAC
*
1870 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
1910 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
1975 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
* *
2040 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTATGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
2105 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
2170 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
2209 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* * ** *
2274 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
2337 CACCATCGGCA
130 CACCATCGGCA
2348 AACTAGGCCC
Statistics
Matches: 407, Mismatches: 27, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
297 29 0.07
298 56 0.14
299 322 0.79
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:2524 original size:34 final size:34
Alignment explanation
Indices: 2481--2559 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
2471 CGGTAAAATA
*
2481 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
2515 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
2549 GGCACCTTGGT
1 GGC-CCTTGGT
2560 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:2586 original size:25 final size:25
Alignment explanation
Indices: 2557--2608 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
2547 TCGGCACCTT
* *
2557 GGTGGCTCGGATGTGCGGGAGCCTC
1 GGTGGCTAGGAGGTGCGGGAGCCTC
2582 GGTGGCTAGGAGGTGCGGGAGCCTC
1 GGTGGCTAGGAGGTGCGGGAGCCTC
2607 GG
1 GG
2609 ACACCATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.10, C:0.21, G:0.52, T:0.17
Consensus pattern (25 bp):
GGTGGCTAGGAGGTGCGGGAGCCTC
Found at i:2640 original size:42 final size:44
Alignment explanation
Indices: 2594--2686 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
2584 TGGCTAGGAG
*
2594 GTGCGGGAGCCTCGGACA-CCATCGGCAACTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
* *
2636 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
2680 GTGCGGG
1 GTGCGGG
2687 CTAAAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 17 0.37
43 16 0.35
44 13 0.28
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
Found at i:4391 original size:14 final size:14
Alignment explanation
Indices: 4372--4403 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
4362 TCCAATCACC
4372 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
4386 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
4400 GGGC
1 GGGC
4404 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:9496 original size:14 final size:14
Alignment explanation
Indices: 9477--9508 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
9467 TCCAATCACC
9477 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
9491 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
9505 GGGC
1 GGGC
9509 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:16402 original size:42 final size:42
Alignment explanation
Indices: 16298--16547 Score: 269
Period size: 42 Copynumber: 5.9 Consensus size: 42
16288 GAGCCTCCAT
* *
16298 CACCTTGGTGGCTCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* *
16341 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* * *
16384 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** *
16426 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
16468 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAGCACCATCGG
16510 CACCTTGGTGCTTGGATGTGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCTTGGATGTGCGGGAGCC-TCGAGCACCA
16548 AAGCTAAAGT
Statistics
Matches: 173, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
41 17 0.10
42 102 0.59
43 44 0.25
44 10 0.06
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:16783 original size:24 final size:24
Alignment explanation
Indices: 16756--16834 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
16746 CCGGTTAGGT
*
16756 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
16780 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
16804 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
16828 TTCCGGT
1 TCCCGGT
16835 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:16960 original size:43 final size:43
Alignment explanation
Indices: 16839--17850 Score: 980
Period size: 43 Copynumber: 23.9 Consensus size: 43
16829 TCCGGTAGCA
16839 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
16882 T-GGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
16924 TAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
16966 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
17009 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
17051 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
17094 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
17136 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
17179 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
17222 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
17265 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
17308 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
17350 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
17393 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
17435 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
17478 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
17521 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
17564 TAGGCCCTTGGTCGTGCGGGAGCCTC-GGCGACCATC-GC-CCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGC-ACCATCGGCAACC
** * * *
17605 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
17648 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
17690 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * **
17733 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
17776 TAGGCCCTTGGTCGTGCGCGGGGCCTC-GG--CCA-C--C-A--
1 TAGGCCCTTGGTCGTGCG-GGAGCCTCGGGCACCATCGGCAACC
*
17811 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
17851 CCTTGGTGGC
Statistics
Matches: 784, Mismatches: 150, Indels: 72
0.78 0.15 0.07
Matches are distributed among these distances:
34 7 0.01
35 19 0.02
37 4 0.01
38 1 0.00
40 2 0.00
41 30 0.04
42 243 0.31
43 473 0.60
44 5 0.01
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:16988 original size:85 final size:84
Alignment explanation
Indices: 16839--17850 Score: 716
Period size: 85 Copynumber: 12.0 Consensus size: 84
16829 TCCGGTAGCA
* *
16839 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCT-TGATGTGCGGGAG
* *
16903 CCCCGGACACCATCGGCAAAC
64 CCTCGGACACCATCGGCAACC
* ** *
16924 TAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCGGGAGC
*
16989 CTCGGGCACCATCGGCAACC
65 CTCGGACACCATCGGCAACC
*
17009 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGATGTGCGGGAGC
**
17074 CTCGGACACTGTCGGCAACC
65 CTCGGACACCATCGGCAACC
* * * *
17094 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GATGTGCGGGAGC
*
17159 CTCGCG-TACCATCGGCAACC
65 CTCG-GACACCATCGGCAACC
* * * ** ** *
17179 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
* **
17244 CCTCGGCCACCATCGGCAAAA
64 CCTCGGACACCATCGGCAACC
* * * ** *
17265 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
*
17330 CCTCGGCCACCATCGGC-ACC
64 CCTCGGACACCATCGGCAACC
* ** * * * ** * ** *
17350 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
17414 GCCTC-GAGCACCATCGGC-ACC
63 GCCTCGGA-CACCATCGGCAACC
* ** * * * * * * ** * *
17435 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
* * *
17499 GGCTCGGGCACCATCGGCAAAC
63 GCCTCGGACACCATCGGCAACC
* ** * ** *
17521 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGAG
*
17586 CCTCGG-CGACCATC-GC-CCC
64 CCTCGGAC-ACCATCGGCAACC
** * * * * ** *
17605 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
*
17669 GCCTC-GAGCACCATCGAC-ACC
63 GCCTCGGA-CACCATCGGCAACC
* ** * * * *** * *
17690 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT-GTGCGGGA
* * * **
17754 GGCTCGGGCACCATCGGTAAAA
63 GCCTCGGACACCATCGGCAACC
* * *
17776 TAGGCCCTTGGTCGTGCGCGGGGCCTCGGCCACCATCGGC-CCTTGGT-C-----GTGCGGGAGC
1 TAGGCCCTTGGTCGTGCG-GGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTGCGGGAGC
*
17834 CTCGGGCACCATCGGCA
65 CTCGGACACCATCGGCA
17851 CCTTGGTGGC
Statistics
Matches: 785, Mismatches: 119, Indels: 53
0.82 0.12 0.06
Matches are distributed among these distances:
78 24 0.03
83 1 0.00
84 77 0.10
85 473 0.60
86 192 0.24
87 18 0.02
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (84 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGATGTGCGGGAGCC
TCGGACACCATCGGCAACC
Found at i:17812 original size:299 final size:299
Alignment explanation
Indices: 16910--17850 Score: 1195
Period size: 299 Copynumber: 3.2 Consensus size: 299
16900 GAGCCCCGGA
** * ** * **
16910 CACCATCGGCAAACTAAGCCCTTGGTATTGCGGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
16974 TCGAT-GTGCGGGAGCCTCGG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGG
66 T-GGTCGTGCGGGAGCCTCGGCG-ACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
17037 GCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCT
129 ACACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCT
*
17102 TGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTA
194 TGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCA
17167 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
259 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
17208 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* *
17273 TGGTCGTGCGGGAGCCTCGGAC-ACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGC
66 TGGTCGTGCGGGAGCCTCGG-CGACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
*
17337 CACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
130 CACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT
*
17402 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCAC
195 GGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCAC
*
17467 CATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
260 CATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
17507 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* ** *
17572 TGGTCGTGCGGGAGCCTCGGCGACCATC-GC-CCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGCGACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGA
* * ** * ** * * **
17634 CACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTTGGTG
130 CACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGA-CACTGTCGGCAACCTAGGCC
* * * * *** **
17696 CTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-TCGTGCGAGAGGCTC
192 CTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC
* * ** * * *
17759 GGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGCGGGGCCTCGGC
254 GCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG-CTCGGG
17806 CACCATC-G--------GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
17851 CCTTGGTGGC
Statistics
Matches: 576, Mismatches: 54, Indels: 34
0.87 0.08 0.05
Matches are distributed among these distances:
290 37 0.06
297 74 0.13
298 136 0.24
299 329 0.57
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGCGACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:17844 original size:34 final size:35
Alignment explanation
Indices: 17778--17857 Score: 126
Period size: 35 Copynumber: 2.3 Consensus size: 35
17768 CGGTAAAATA
*
17778 GGCCCTTGGTCGTGCGCGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGCGGAGCCTCGGCCACCATC
*
17813 GGCCCTTGGTCGTGCG-GGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGCGGAGCCTCGGCCACCATC
17847 GGCACCTTGGT
1 GGC-CCTTGGT
17858 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
34 19 0.45
35 23 0.55
ACGTcount: A:0.07, C:0.36, G:0.38, T:0.19
Consensus pattern (35 bp):
GGCCCTTGGTCGTGCGCGGAGCCTCGGCCACCATC
Found at i:17885 original size:25 final size:25
Alignment explanation
Indices: 17856--17904 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
17846 CGGCACCTTG
* *
17856 GTGGCTCGGATGTGCGGGAGCCTCA
1 GTGGCTAGGAGGTGCGGGAGCCTCA
17881 GTGGCTAGGAGGTGCGGGAGCCTC
1 GTGGCTAGGAGGTGCGGGAGCCTC
17905 GGACACCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.12, C:0.22, G:0.47, T:0.18
Consensus pattern (25 bp):
GTGGCTAGGAGGTGCGGGAGCCTCA
Found at i:17938 original size:42 final size:44
Alignment explanation
Indices: 17892--17984 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
17882 TGGCTAGGAG
*
17892 GTGCGGGAGCCTCGGACA-CCATCGGCAACTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
* *
17934 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
17978 GTGCGGG
1 GTGCGGG
17985 CTAAAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 17 0.37
43 16 0.35
44 13 0.28
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
Found at i:28490 original size:42 final size:42
Alignment explanation
Indices: 28386--28677 Score: 319
Period size: 42 Copynumber: 6.9 Consensus size: 42
28376 GAGCCTCCAT
*
28386 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
28429 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
28472 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
28514 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
28556 CACCTCGGTGCTAT-GATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
28598 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
*
28640 CACCTTGGTGCATGGATGAGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGCATGGATGTGCGGGAGCC-TCGAGCACCA
28678 AAGCTAAAGT
Statistics
Matches: 211, Mismatches: 26, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
41 16 0.08
42 141 0.67
43 43 0.20
44 11 0.05
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:28913 original size:24 final size:24
Alignment explanation
Indices: 28886--28964 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
28876 CCGGTTAGGT
*
28886 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
28910 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
28934 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
28958 TTCCGGT
1 TCCCGGT
28965 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:29089 original size:43 final size:43
Alignment explanation
Indices: 28969--30279 Score: 1332
Period size: 43 Copynumber: 30.9 Consensus size: 43
28959 TCCGGTAGCA
28969 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * * * *
29012 T-GGTGCTAGGAT-GTGCAGGAGCCCCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
29054 TAAGCCCTTGGTAC-TGCAGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGT-CGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
29096 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
29139 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
29181 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
29224 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
29266 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
29309 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
29352 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
29395 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
29438 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
29480 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
29523 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
29565 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
29608 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * **
29651 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
29694 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
29737 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * **
29779 TCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
29822 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
29864 TTGGTGCTTGGAT-GTCCGAGAACCTCGCGCACCATCGACAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
29907 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* **
29950 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
29993 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
** * * *
30035 TAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
30078 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * *
30120 TTGGTGCTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * **
30163 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
30206 TAGGCCCTTGGTCGTGCGGGGGCCTC-GG--CCA-C--C-A--
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
30240 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
30280 CCTTGGTGGC
Statistics
Matches: 1040, Mismatches: 189, Indels: 80
0.79 0.14 0.06
Matches are distributed among these distances:
34 24 0.02
35 2 0.00
36 1 0.00
37 3 0.00
38 1 0.00
39 1 0.00
40 4 0.00
42 334 0.32
43 670 0.64
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:29118 original size:85 final size:85
Alignment explanation
Indices: 28969--30308 Score: 1301
Period size: 85 Copynumber: 15.8 Consensus size: 85
28959 TCCGGTAGCA
* *
28969 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT-GGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGATGTGCGGGAG
* *
29033 CCCCGGACACCATCGGCAAAC
65 CCTCGGACACCATCGGCAACC
* * * *
29054 TAAGCCCTTGGTAC-TGCAGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGATGTGCGGGA
1 TAGGCCCTTGGT-CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTT-GATGTGCGGGA
*
29117 GCCTCGGGCACCATCGGCAACC
64 GCCTCGGACACCATCGGCAACC
* *
29139 TAGGCCCTTGGTCGTGCGGTAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGATGTGCGGGAG
**
29203 CCTCGGACACTGTCGGCAACC
65 CCTCGGACACCATCGGCAACC
* * * *
29224 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGATGTGCGAGAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTT-GATGTGCGGGAG
*
29288 CCTCGCG-TACCATCGGCAACC
65 CCTCG-GACACCATCGGCAACC
* * * * ** *
29309 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGAT-GTGCGGGAG
* **
29374 CCTCGGCCACCATCGGCAAAA
65 CCTCGGACACCATCGGCAACC
* * ** *
29395 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGAT-GTGCGGGAG
*
29460 CCTCGGGCACCATCGGC-ACC
65 CCTCGGACACCATCGGCAACC
* ** * * ** ** *
29480 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGAT-GTGCGGGA
29544 GCCTC-GAGCACCATCGGC-ACC
64 GCCTCGGA-CACCATCGGCAACC
* ** * * * * ** * *
29565 TTGGTGCTTGGAT-GTGCGAGAACCTCGCGTACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGAT-GTGCGGGA
* * *
29629 GGCTCGGGCACCATCGGCAAAC
64 GCCTCGGACACCATCGGCAACC
* * ** ** *
29651 TAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGAT-GTGCGGGAG
*
29716 CCTCGGACACCATCGGCAAAC
65 CCTCGGACACCATCGGCAACC
* * *
29737 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTCGGTGCTATGATGGGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGATGTGCGGGAG
**
29801 CCTCGGACACTGTCGGCAACC
65 CCTCGGACACCATCGGCAACC
* * * * *
29822 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGATGTCCGAGAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTT-GATGTGCGGGAG
*
29886 CCTCGCG-CACCATCGACAACC
65 CCTCG-GACACCATCGGCAACC
* * * * ** *
29907 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGAT-GTGCGGGAG
* **
29972 CCTCGGGCACCATCGGCAAAA
65 CCTCGGACACCATCGGCAACC
* * *
29993 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGATGTGCGGGAG
*
30057 CCTCGGACACCATCGGCAAAC
65 CCTCGGACACCATCGGCAACC
* * * * *
30078 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGAC-ACCTTGGTGCTTGGATGTGCCGGAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTT-GATGTGCGGGAG
*
30142 CCTCGGGCACCATCGGCAACC
65 CCTCGGACACCATCGGCAACC
* * * * ** ** * *
30163 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCGGGGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGAT-GTGCGGGAG
30228 CCTCGG---CCA-C--C-A--
65 CCTCGGACACCATCGGCAACC
* * *
30240 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCGGATGTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-GCT-TGATGTGCGGGA
30304 GCCTC
64 GCCTC
30309 AGTGGCTAGG
Statistics
Matches: 1062, Mismatches: 165, Indels: 64
0.82 0.13 0.05
Matches are distributed among these distances:
76 4 0.00
77 48 0.05
78 2 0.00
79 1 0.00
80 1 0.00
82 1 0.00
83 3 0.00
84 10 0.01
85 678 0.64
86 314 0.30
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGATGTGCGGGAGC
CTCGGACACCATCGGCAACC
Found at i:29577 original size:299 final size:299
Alignment explanation
Indices: 29040--30074 Score: 1783
Period size: 299 Copynumber: 3.5 Consensus size: 299
29030 GAGCCCCGGA
* * * ** * **
29040 CACCATCGGCAAACTAAGCCCTTGGTAC-TGCAGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGC
1 CACCATCGGCAAACTAAGCCCTTGGT-CGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCC
* * * *
29103 TTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGG
65 TT-GGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGG
29167 GCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCT
129 GCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCT
29232 TGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTA
194 TGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTA
29297 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
259 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
29338 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
29403 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
29468 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
29533 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTACC
29598 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
29637 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
*
29702 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
*
29767 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
* *
29832 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTACC
*
29897 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
29936 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
* ** ** * *
30001 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
30064 CACCATCGGCA
130 CACCATCGGCA
30075 AACTAGGCCC
Statistics
Matches: 708, Mismatches: 25, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
297 1 0.00
298 85 0.12
299 622 0.88
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTACC
ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:30099 original size:299 final size:299
Alignment explanation
Indices: 29040--30279 Score: 1782
Period size: 299 Copynumber: 4.2 Consensus size: 299
29030 GAGCCCCGGA
* * ** * **
29040 CACCATCGGCAAACTAAGCCCTTGGTAC-TGCAGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGC
1 CACCATCGGCAAACTAAGCCCTTGGT-CGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCC
* * * *
29103 TTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGTAGCCTCGG
65 TT-GGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGG
29167 GCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCT
129 GCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCT
*
29232 TGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTA
194 TGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCA
29297 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
259 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
29338 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
29403 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
29468 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
*
29533 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGTACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
29598 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
*
29637 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
*
29702 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGCC
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
*
29767 ACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
131 ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
*
29832 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACCTCGCGCACC
196 GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
*
29897 ATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
261 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
29936 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
* ** ** * *
30001 TGGTCGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * ** * ** * * **
30064 CACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTTGGTG
130 CACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGA-CACTGTCGGCAACCTAGGCC
* * * * *** **
30126 CTTGGAT-GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-TCGTGCGAGAGGCTC
192 CTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC
* * ** * *
30189 GGGCACCATCGGTAAAATAGGCCCTTGGTCGTGCG-GGGGCCTCGGC
254 GCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGG-CTCGGG
30235 CACCATC-G--------GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
30280 CCTTGGTGGC
Statistics
Matches: 877, Mismatches: 54, Indels: 30
0.91 0.06 0.03
Matches are distributed among these distances:
290 37 0.04
297 1 0.00
298 128 0.15
299 711 0.81
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (299 bp):
CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCT
TGGTCGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
ACCATCGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACC
ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGG
Found at i:30251 original size:34 final size:34
Alignment explanation
Indices: 30208--30286 Score: 131
Period size: 34 Copynumber: 2.3 Consensus size: 34
30198 CGGTAAAATA
*
30208 GGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
*
30242 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
30276 GGCACCTTGGT
1 GGC-CCTTGGT
30287 GGCTCGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.08, C:0.35, G:0.38, T:0.19
Consensus pattern (34 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATC
Found at i:30314 original size:25 final size:25
Alignment explanation
Indices: 30285--30333 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
30275 CGGCACCTTG
* *
30285 GTGGCTCGGATGTGCGGGAGCCTCA
1 GTGGCTAGGAGGTGCGGGAGCCTCA
30310 GTGGCTAGGAGGTGCGGGAGCCTC
1 GTGGCTAGGAGGTGCGGGAGCCTC
30334 GGACACCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.12, C:0.22, G:0.47, T:0.18
Consensus pattern (25 bp):
GTGGCTAGGAGGTGCGGGAGCCTCA
Found at i:30367 original size:42 final size:44
Alignment explanation
Indices: 30321--30413 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 44
30311 TGGCTAGGAG
*
30321 GTGCGGGAGCCTCGGACA-CCATCGGCAACTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
* *
30363 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
30407 GTGCGGG
1 GTGCGGG
30414 CTAAAGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 17 0.37
43 16 0.35
44 13 0.28
ACGTcount: A:0.13, C:0.28, G:0.40, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCCTCGGACACCCATCGGCAACTTGGTGCCTGGGAT
Found at i:37739 original size:267 final size:267
Alignment explanation
Indices: 37264--38225 Score: 1915
Period size: 267 Copynumber: 3.6 Consensus size: 267
37254 ACCATCCTTG
37264 GATCTATGAAGACATCAACTCAAGATAACCCAGTATTCAAGTTTAACCTACGCAATTACTATATC
1 GATCTATGAAGACATCAACTCAAGATAACCCAGTATTCAAGTTTAACCTACGCAATTACTATATC
37329 ATATTTCATCACAATGCACTTTTGCAAACAATAAACATTTAGGCTTACCTAGCTGAGGCAGGCCT
66 ATATTTCATCACAATGCACTTTTGCAAACAATAAACATTTAGGCTTACCTAGCTGAGGCAGGCCT
*
37394 CTGTTCATGGAAATCAAAGGTATACACATATTTCATACCAATCCTTGAAACCAAAATTTCATAAC
131 CTGTTCATGGAAATCAAAGGTATACACATATTTCATAACAATCCTTGAAACCAAAATTTCATAAC
37459 ACTAATGAAACTAATAAAGATCTGTAAACCGAGACAATTAGAGACAATGAAGTATCACGGCAACA
196 ACTAATGAAACTAATAAAGATCTGTAAACCGAGACAATTAGAGACAATGAAGTATCACGGCAACA
37524 AAATGTA
261 AAATGTA
37531 GATCTATGAAGACATCAACTCAAGATAACCCAGTATTCAAGTTTAACCTACGCAATTACTATATC
1 GATCTATGAAGACATCAACTCAAGATAACCCAGTATTCAAGTTTAACCTACGCAATTACTATATC
37596 ATATTTCATCACAATGCACTTTTGCAAACAATAAACATTTAGGCTTACCTAGCTGAGGCAGGCCT
66 ATATTTCATCACAATGCACTTTTGCAAACAATAAACATTTAGGCTTACCTAGCTGAGGCAGGCCT
37661 CTGTTCATGGAAATCAAAGGTATACACATATTTCATAACAATCCTTGAAACCAAAATTTCATAAC
131 CTGTTCATGGAAATCAAAGGTATACACATATTTCATAACAATCCTTGAAACCAAAATTTCATAAC
37726 ACTAATGAAACTAATAAAGATCTGTAAACCGAGACAATTAGAGACAATGAAGTATCACGGCAACA
196 ACTAATGAAACTAATAAAGATCTGTAAACCGAGACAATTAGAGACAATGAAGTATCACGGCAACA
37791 AAATGTA
261 AAATGTA
37798 GATCTATGAAGACATCAACTCAAGATAACCCAGTATTCAAGTTTAACCTACGCAATTACTATATC
1 GATCTATGAAGACATCAACTCAAGATAACCCAGTATTCAAGTTTAACCTACGCAATTACTATATC
37863 ATATTTCATCACAATGCACTTTTGCAAACAATAAACATTTAGGCTTACCTAGCTGAGGCAGGCCT
66 ATATTTCATCACAATGCACTTTTGCAAACAATAAACATTTAGGCTTACCTAGCTGAGGCAGGCCT
37928 CTGTTCATGGAAATCAAAGGTATACACATATTTCATAACAATCCTTGAAACCAAAATTTCATAAC
131 CTGTTCATGGAAATCAAAGGTATACACATATTTCATAACAATCCTTGAAACCAAAATTTCATAAC
37993 ACTAATGAAACTAATAAAGATCTGTAAACCGAGACAATTAGAGACAATGAAGTATCACGGCAACA
196 ACTAATGAAACTAATAAAGATCTGTAAACCGAGACAATTAGAGACAATGAAGTATCACGGCAACA
38058 AAATGTA
261 AAATGTA
38065 GATCTATGAAGACATCAACTCAAGATAACCCAGTATTCAAGTTTAACCTACGCAATTACTATATC
1 GATCTATGAAGACATCAACTCAAGATAACCCAGTATTCAAGTTTAACCTACGCAATTACTATATC
38130 ATATTTCATCACAATGCACTTTTGCAAACAATAAACATTTAGGCTTACCTAGCTGAGGCAGGCCT
66 ATATTTCATCACAATGCACTTTTGCAAACAATAAACATTTAGGCTTACCTAGCTGAGGCAGGCCT
38195 CTGTTCATGGAAATCAAAGGTATACACATAT
131 CTGTTCATGGAAATCAAAGGTATACACATAT
38226 CCCGTAGGCA
Statistics
Matches: 694, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
267 694 1.00
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.27
Consensus pattern (267 bp):
GATCTATGAAGACATCAACTCAAGATAACCCAGTATTCAAGTTTAACCTACGCAATTACTATATC
ATATTTCATCACAATGCACTTTTGCAAACAATAAACATTTAGGCTTACCTAGCTGAGGCAGGCCT
CTGTTCATGGAAATCAAAGGTATACACATATTTCATAACAATCCTTGAAACCAAAATTTCATAAC
ACTAATGAAACTAATAAAGATCTGTAAACCGAGACAATTAGAGACAATGAAGTATCACGGCAACA
AAATGTA
Found at i:43610 original size:6 final size:6
Alignment explanation
Indices: 43596--43634 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
43586 GCAGAAGGTA
* *
43596 AAAGGC AAAGTC AAAGGC AAAGGC GAAGGC AAAGGC AAA
1 AAAGGC AAAGGC AAAGGC AAAGGC AAAGGC AAAGGC AAA
43635 AGGATTAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.51, C:0.15, G:0.31, T:0.03
Consensus pattern (6 bp):
AAAGGC
Found at i:59515 original size:7 final size:7
Alignment explanation
Indices: 59503--59716 Score: 94
Period size: 7 Copynumber: 31.0 Consensus size: 7
59493 TCCAGCCAAT
59503 CCCTAAA
1 CCCTAAA
59510 CCCTAAA
1 CCCTAAA
*
59517 CTCTAAA
1 CCCTAAA
59524 CCCTAAA
1 CCCTAAA
* * *
59531 TCATAAC
1 CCCTAAA
59538 CCCTAAA
1 CCCTAAA
* *
59545 CCTTATA
1 CCCTAAA
*
59552 -TCTAAA
1 CCCTAAA
*
59558 CCCTAGA
1 CCCTAAA
59565 -CCTAAA
1 CCCTAAA
59571 CCCTAAA
1 CCCTAAA
59578 -CCTAAA
1 CCCTAAA
*
59584 CCTTAAA
1 CCCTAAA
*
59591 ACCTAAA
1 CCCTAAA
*
59598 ACC-AAA
1 CCCTAAA
* **
59604 GCCCCAGG
1 -CCCTAAA
*
59612 CCCTAAG
1 CCCTAAA
* *
59619 CCCCAAG
1 CCCTAAA
*
59626 CCCTAAT
1 CCCTAAA
* *
59633 CCTTAAG
1 CCCTAAA
* *
59640 CCTTAAG
1 CCCTAAA
*
59647 CCTTAAA
1 CCCTAAA
*
59654 CCTTAAA
1 CCCTAAA
* *
59661 CTCAAAA
1 CCCTAAA
* *
59668 TCTTAAA
1 CCCTAAA
*
59675 CTCTAAA
1 CCCTAAA
*
59682 TCCTAAA
1 CCCTAAA
59689 CCCTAAA
1 CCCTAAA
*
59696 CACTAAA
1 CCCTAAA
*
59703 CCTTAAA
1 CCCTAAA
*
59710 CCATAAA
1 CCCTAAA
59717 TAAATAGTAA
Statistics
Matches: 155, Mismatches: 47, Indels: 10
0.73 0.22 0.05
Matches are distributed among these distances:
6 17 0.11
7 137 0.88
8 1 0.01
ACGTcount: A:0.42, C:0.34, G:0.04, T:0.21
Consensus pattern (7 bp):
CCCTAAA
Found at i:59524 original size:14 final size:14
Alignment explanation
Indices: 59505--59590 Score: 61
Period size: 13 Copynumber: 5.9 Consensus size: 14
59495 CAGCCAATCC
59505 CTAAACCCTAAACT
1 CTAAACCCTAAACT
59519 CTAAACCCTAAA-T
1 CTAAACCCTAAACT
*
59532 CATAACCCCTAAACCTTATAT
1 C-TAAACCCTAAA-C-----T
*
59553 CTAAACCCTAGAC-
1 CTAAACCCTAAACT
59566 CTAAACCCTAAAC-
1 CTAAACCCTAAACT
*
59579 CTAAACCTTAAA
1 CTAAACCCTAAA
59591 ACCTAAAACC
Statistics
Matches: 59, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
13 25 0.42
14 22 0.37
19 1 0.02
20 9 0.15
21 2 0.03
ACGTcount: A:0.43, C:0.34, G:0.01, T:0.22
Consensus pattern (14 bp):
CTAAACCCTAAACT
Found at i:69845 original size:17 final size:17
Alignment explanation
Indices: 69810--69843 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
69800 GTTATTTAAC
*
69810 TAGATATATTTTTATTT
1 TAGAGATATTTTTATTT
69827 TAGAGATA-TTTTATTT
1 TAGAGATATTTTTATTT
69843 T
1 T
69844 TATCATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (17 bp):
TAGAGATATTTTTATTT
Found at i:70044 original size:19 final size:20
Alignment explanation
Indices: 70003--70047 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
69993 GTACTTGTTA
70003 GAGA-ATATTATTATTTAGT
1 GAGATATATTATTATTTAGT
* *
70022 GAGATATATTCTTATTTTG-
1 GAGATATATTATTATTTAGT
70041 GAGATAT
1 GAGATAT
70048 TTTGTTATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.33, C:0.02, G:0.18, T:0.47
Consensus pattern (20 bp):
GAGATATATTATTATTTAGT
Found at i:71917 original size:20 final size:20
Alignment explanation
Indices: 71882--71994 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
71872 TGTTTTGAAC
* * *
71882 GTGCCTCTAGTCGCACATAT
1 GTGCCTCTATTTGCACATTT
*
71902 GTGCCTCTATTTGCAC-TTCG
1 GTGCCTCTATTTGCACATT-T
*
71922 GTGCCTCTATTTGCACATTC
1 GTGCCTCTATTTGCACATTT
* * *
71942 ATGCCTTTGTTTGCAC-TTT
1 GTGCCTCTATTTGCACATTT
71961 AGTGCCTCTATTTGCACATTT
1 -GTGCCTCTATTTGCACATTT
*
71982 GTGCCTCTGTTTG
1 GTGCCTCTATTTG
71995 TGTCATATCT
Statistics
Matches: 76, Mismatches: 13, Indels: 8
0.78 0.13 0.08
Matches are distributed among these distances:
19 3 0.04
20 68 0.89
21 5 0.07
ACGTcount: A:0.13, C:0.27, G:0.19, T:0.42
Consensus pattern (20 bp):
GTGCCTCTATTTGCACATTT
Found at i:71938 original size:40 final size:39
Alignment explanation
Indices: 71882--71994 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 39
71872 TGTTTTGAAC
* * * *
71882 GTGCCTCTAGTCGCACATATGTGCCTCTATTTGCACTTCG
1 GTGCCTCTATTTGCACAT-TGTGCCTCTGTTTGCACTTCA
* * *
71922 GTGCCTCTATTTGCACATTCATGCCTTTGTTTGCACTTTA
1 GTGCCTCTATTTGCACATT-GTGCCTCTGTTTGCACTTCA
71962 GTGCCTCTATTTGCACATTTGTGCCTCTGTTTG
1 GTGCCTCTATTTGCACA-TTGTGCCTCTGTTTG
71995 TGTCATATCT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.02
40 59 0.95
41 2 0.03
ACGTcount: A:0.13, C:0.27, G:0.19, T:0.42
Consensus pattern (39 bp):
GTGCCTCTATTTGCACATTGTGCCTCTGTTTGCACTTCA
Found at i:72374 original size:150 final size:150
Alignment explanation
Indices: 72103--72404 Score: 595
Period size: 150 Copynumber: 2.0 Consensus size: 150
72093 ATTAGATTCA
*
72103 AGTCCTAATGTTCACACTCTTCTATTTAATTTATTCTAGAGGTCTTAGGTTCAAGTCCTAATATA
1 AGTCCTAATGTTCACACTCTTCTATTTAATTTATCCTAGAGGTCTTAGGTTCAAGTCCTAATATA
72168 CTACACAGAAATGCCCTAGAAAAAAAGAACATCTCAAAATGAATAACCTCAACTTTCAATATGGG
66 CTACACAGAAATGCCCTAGAAAAAAAGAACATCTCAAAATGAATAACCTCAACTTTCAATATGGG
72233 AGTTGGCTTAGAGCTCAGCT
131 AGTTGGCTTAGAGCTCAGCT
72253 AGTCCTAATGTTCACACTCTTCTATTTAATTTATCCTAGAGGTCTTAGGTTCAAGTCCTAATATA
1 AGTCCTAATGTTCACACTCTTCTATTTAATTTATCCTAGAGGTCTTAGGTTCAAGTCCTAATATA
72318 CTACACAGAAATGCCCTAGAAAAAAAGAACATCTCAAAATGAATAACCTCAACTTTCAATATGGG
66 CTACACAGAAATGCCCTAGAAAAAAAGAACATCTCAAAATGAATAACCTCAACTTTCAATATGGG
72383 AGTTGGCTTAGAGCTCAGCT
131 AGTTGGCTTAGAGCTCAGCT
72403 AG
1 AG
72405 AGGGATCAAC
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 151 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (150 bp):
AGTCCTAATGTTCACACTCTTCTATTTAATTTATCCTAGAGGTCTTAGGTTCAAGTCCTAATATA
CTACACAGAAATGCCCTAGAAAAAAAGAACATCTCAAAATGAATAACCTCAACTTTCAATATGGG
AGTTGGCTTAGAGCTCAGCT
Found at i:73270 original size:48 final size:48
Alignment explanation
Indices: 73217--73336 Score: 231
Period size: 48 Copynumber: 2.5 Consensus size: 48
73207 ATTACAAACA
*
73217 TCAATTACTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
1 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
73265 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
1 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
73313 TCAATTATTTACCCTATTAACAAA
1 TCAATTATTTACCCTATTAACAAA
73337 GCTCGGACTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (48 bp):
TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
Found at i:94619 original size:17 final size:17
Alignment explanation
Indices: 94594--94627 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
94584 TTGTGCAATC
94594 TTAGCTTAGTCTAATAA
1 TTAGCTTAGTCTAATAA
* *
94611 TTAGTTTAGTTTAATAA
1 TTAGCTTAGTCTAATAA
94628 AAATCTTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (17 bp):
TTAGCTTAGTCTAATAA
Found at i:96799 original size:42 final size:42
Alignment explanation
Indices: 96733--96841 Score: 137
Period size: 42 Copynumber: 2.6 Consensus size: 42
96723 CTAAGATTGT
**
96733 GTGTAAGACCATATTTGGGATATGGCATCGATATGAGATTTC
1 GTGTAAGACCATAGCTGGGATATGGCATCGATATGAGATTTC
* * *
96775 GTGTAAGACTATAGCTGGGCTATGGCATCGATATGAGATTAC
1 GTGTAAGACCATAGCTGGGATATGGCATCGATATGAGATTTC
* * * *
96817 ATGTAAAACCATATCTAGGATATGG
1 GTGTAAGACCATAGCTGGGATATGG
96842 TATTGGTACT
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGATATGGCATCGATATGAGATTTC
Found at i:98526 original size:46 final size:46
Alignment explanation
Indices: 98473--98646 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
98463 TATTTGGGCA
98473 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAGCG
* * *
98519 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA---AGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATG---CGA-GCG
* * **
98566 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAGCG
* * *
98612 -CCTGAGCTCATTGAGTTGAGTTCGAGTTCACTTAT
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
98647 GGGCGGGGTA
Statistics
Matches: 108, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
45 2 0.02
46 62 0.57
47 33 0.31
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAGCG
Found at i:98628 original size:93 final size:93
Alignment explanation
Indices: 98469--98641 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
98459 GGGATATTTG
* *
98469 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGTCCGAACTCATTGAG
98534 TTGAGTCCGAGTTCAAGAGATGTAACTA
66 TTGAGTCCGAGTTCAAGAGATGTAACTA
* * * *
98562 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCTGAGCTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGTCC-GAACTCATTGA
*
98626 GTTGAGTTCGAGTTCA
65 GTTGAGTCCGAGTTCA
98642 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGTCCGAACTCATTGAG
TTGAGTCCGAGTTCAAGAGATGTAACTA
Found at i:104007 original size:20 final size:20
Alignment explanation
Indices: 103984--104023 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
103974 GTAGAAACAC
103984 TCTTAATTTTTAATTTGGAA
1 TCTTAATTTTTAATTTGGAA
104004 TCTTAATTTTTAATTTGGAA
1 TCTTAATTTTTAATTTGGAA
104024 AATGTACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.10, T:0.55
Consensus pattern (20 bp):
TCTTAATTTTTAATTTGGAA
Found at i:108321 original size:35 final size:35
Alignment explanation
Indices: 108254--108357 Score: 109
Period size: 35 Copynumber: 3.0 Consensus size: 35
108244 ATTACGATTT
* * * *
108254 AACACAGTGGCATGCTTTACATACGAATCAGAATC
1 AACATAGTGGCATGCTTAACATGCGAACCAGAATC
* * *
108289 AGCATAGTGGCATGCTTAACATGCAAACCAGAAAC
1 AACATAGTGGCATGCTTAACATGCGAACCAGAATC
* * * *
108324 AATATAGTGACATACTTAACATGCGAACTAGAAT
1 AACATAGTGGCATGCTTAACATGCGAACCAGAAT
108358 ATGAACGGAA
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
35 55 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.22
Consensus pattern (35 bp):
AACATAGTGGCATGCTTAACATGCGAACCAGAATC
Found at i:110519 original size:16 final size:15
Alignment explanation
Indices: 110494--110523 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
110484 TATCGTCTTC
110494 TTAGTTTTAGTTTAG
1 TTAGTTTTAGTTTAG
110509 TTAGATTTTAGTTTA
1 TTAG-TTTTAGTTTA
110524 AAACAATTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (15 bp):
TTAGTTTTAGTTTAG
Found at i:112035 original size:51 final size:51
Alignment explanation
Indices: 111959--112070 Score: 170
Period size: 51 Copynumber: 2.2 Consensus size: 51
111949 CTCAAACTTA
* * *
111959 CTTCATACTTCATCCGGAATTATTACCTTGTTGCTCTAACTTCAACAAGAG
1 CTTCATATTTCATCCAGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
* * *
112010 CTTCATATTTCATCCAGAATAATTACTTTGTTGCTCTAGCTTTAACAAGAG
1 CTTCATATTTCATCCAGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
112061 CTTCATATTT
1 CTTCATATTT
112071 TATACGGATA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.39
Consensus pattern (51 bp):
CTTCATATTTCATCCAGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
Found at i:115279 original size:105 final size:95
Alignment explanation
Indices: 115069--115311 Score: 272
Period size: 96 Copynumber: 2.4 Consensus size: 95
115059 TTTAAATTTG
* * * * *
115069 AGGGTTTTAAGGAAAAAATTAAATAAATTAGGGTTCAAGGTTTCTTAATTAAATTAATTATAAAT
1 AGGGTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTATAAAT
*
115134 TTTAAAAAATTAGATTGTGGTTTAATGTTT
66 TTTAAAAAATTAGATTGTGGTTTAAGGTTT
* *
115164 ATGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAA
1 A-GGGTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTATAAA
*
115229 -TTTAAAAAATTTAGATTAGGCTTTTAAGGTTTAGGGTATT
65 TTTTAAAAAA-TTAGATT--G----T--GGTTTAAGGT-TT
* *
115269 AGGGTATTTAACGAAAAAATCAAATAAATTAGGGTTTGGGGTT
1 AGGGT-TTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTT
115312 TAGGGTTTCT
Statistics
Matches: 124, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
95 10 0.08
96 63 0.51
98 1 0.01
102 1 0.01
104 11 0.09
105 38 0.31
ACGTcount: A:0.40, C:0.03, G:0.19, T:0.38
Consensus pattern (95 bp):
AGGGTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTATAAAT
TTTAAAAAATTAGATTGTGGTTTAAGGTTT
Found at i:115817 original size:125 final size:127
Alignment explanation
Indices: 115355--115888 Score: 768
Period size: 127 Copynumber: 4.2 Consensus size: 127
115345 AAAAAGATCT
* * ** *
115355 CACGTGGACGCTCTTTTGTTACAGTAGTTTCTGGAAAAAATAATTTTGAGAAAACGTTTCTGAGC
1 CACGTGGACGCTCTTTTGCTATAGTAGTTTCTAAAAAAAATAATTTTGAGAAGACGTTTCTGAGC
*
115420 AAATAGTGTCAAAAACACTTCAAGCACGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCC
66 AAATAGTGTCAAAAACACTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCC
* * * * *
115482 CGCATAGATGCTCTTTTGCTATAGTATTTTCTAAAAAAAATAATTTTGAGAAGACGTTTCTGAGC
1 CACGTGGACGCTCTTTTGCTATAGTAGTTTCTAAAAAAAATAATTTTGAGAAGACGTTTCTGAGC
* *
115547 AAATAGTGTCAAAAACACTTCAAGTAGGATGCATTGTCAGCAAAAGTATTGAAAGAAGCTCC
66 AAATAGTGTCAAAAACACTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCC
** **
115609 CACGTGGACGCTCTTTTGCTATAGTAGTTT-TTGAAAAAATAATTTTGAGAAGATTTTTCTGAGC
1 CACGTGGACGCTCTTTTGCTATAGTAGTTTCTAAAAAAAATAATTTTGAGAAGACGTTTCTGAGC
* * * *
115673 AAATAGTGTCAAAAACGCTTCAAGTAGGATGTATTGTTAGCAAAAGTACTGAAAGAAGCTCC
66 AAATAGTGTCAAAAACACTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCC
* * *
115735 CACGT-GACGCTATTTTGCTATAATAGTTTCT-AAAAAAATAATTTTGAGAAGATGTTTCTGAGC
1 CACGTGGACGCTCTTTTGCTATAGTAGTTTCTAAAAAAAATAATTTTGAGAAGACGTTTCTGAGC
* * * * *
115798 AAATAGTGTCAAAATCGCTTCAAGCAAGATGCAATGTCAGCAAAAATACTGAAAGAAGCTCC
66 AAATAGTGTCAAAAACACTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCC
* *
115860 CACGTGGACACTCTTTTGCTACAGTAGTT
1 CACGTGGACGCTCTTTTGCTATAGTAGTT
115889 CCTATTTGGC
Statistics
Matches: 364, Mismatches: 41, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
125 112 0.31
126 113 0.31
127 139 0.38
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (127 bp):
CACGTGGACGCTCTTTTGCTATAGTAGTTTCTAAAAAAAATAATTTTGAGAAGACGTTTCTGAGC
AAATAGTGTCAAAAACACTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCC
Found at i:121364 original size:20 final size:20
Alignment explanation
Indices: 121314--121381 Score: 100
Period size: 20 Copynumber: 3.3 Consensus size: 20
121304 AAAAATTAAC
*
121314 GAGAGCTTTGAGAGAAATTT
1 GAGAGATTTGAGAGAAATTT
*
121334 GAGAGAAATTTAAGAGAAATTT
1 GAGAG--ATTTGAGAGAAATTT
121356 GAGAGATTTGAGAGAAATTT
1 GAGAGATTTGAGAGAAATTT
121376 GAGAGA
1 GAGAGA
121382 ATATTGAAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
20 25 0.58
22 18 0.42
ACGTcount: A:0.43, C:0.01, G:0.29, T:0.26
Consensus pattern (20 bp):
GAGAGATTTGAGAGAAATTT
Found at i:121388 original size:11 final size:11
Alignment explanation
Indices: 121320--121382 Score: 103
Period size: 11 Copynumber: 5.9 Consensus size: 11
121310 TAACGAGAGC
121320 TTTGAGAGAAA
1 TTTGAGAGAAA
121331 TTTGAGAGAAA
1 TTTGAGAGAAA
*
121342 TTTAAGAGAAA
1 TTTGAGAGAAA
121353 TTTGAGAG--A
1 TTTGAGAGAAA
121362 TTTGAGAGAAA
1 TTTGAGAGAAA
121373 TTTGAGAGAA
1 TTTGAGAGAA
121383 TATTGAAAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
9 9 0.19
11 39 0.81
ACGTcount: A:0.44, C:0.00, G:0.27, T:0.29
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:121394 original size:31 final size:31
Alignment explanation
Indices: 121330--121394 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
121320 TTTGAGAGAA
*
121330 ATTTGAGAGAAATTTAAGAGAAATTTGAGAG
1 ATTTGAGAGAAATTTAAGAGAAATTTGAAAG
*
121361 ATTTGAGAGAAATTTGAGAG-AATATTGAAAG
1 ATTTGAGAGAAATTTAAGAGAAAT-TTGAAAG
121392 ATT
1 ATT
121395 GAAGATGGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 3 0.10
31 28 0.90
ACGTcount: A:0.45, C:0.00, G:0.25, T:0.31
Consensus pattern (31 bp):
ATTTGAGAGAAATTTAAGAGAAATTTGAAAG
Found at i:124151 original size:30 final size:30
Alignment explanation
Indices: 124063--124151 Score: 81
Period size: 30 Copynumber: 2.9 Consensus size: 30
124053 CGTTACTTCC
* * *
124063 TTGAAATTTTTAATTAAGTACTCCTAAAATTT
1 TTGAAAATTTTAATTATG-ACTCC-AAAATAT
* * *
124095 TTGAAAATTCTCATTAT-TCTCACAAAATAT
1 TTGAAAATTTTAATTATGACTC-CAAAATAT
*
124125 TTGAAAATTTTAATTATGCCTCCAAAA
1 TTGAAAATTTTAATTATGACTCCAAAA
124152 CTTAGTCCCA
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
30 29 0.63
31 4 0.09
32 13 0.28
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (30 bp):
TTGAAAATTTTAATTATGACTCCAAAATAT
Found at i:131927 original size:23 final size:22
Alignment explanation
Indices: 131883--131932 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
131873 ATCAATTTAA
*
131883 CATATTTTCAAGATAAATTCAT
1 CATATTTTCAAGATAAAGTCAT
*
131905 GCATATTTAT-AAGATAACGTCAT
1 -CATATTT-TCAAGATAAAGTCAT
131928 CATAT
1 CATAT
131933 ATCTAAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 5 0.21
23 18 0.75
24 1 0.04
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (22 bp):
CATATTTTCAAGATAAAGTCAT
Found at i:138383 original size:50 final size:51
Alignment explanation
Indices: 138306--138541 Score: 323
Period size: 50 Copynumber: 4.5 Consensus size: 51
138296 GACCATGGCA
138306 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
138357 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGAAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGG---A--CAAA-TG
* *
138413 ATAAGTGATAAGTGATAGCTTTGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
138464 A-AATTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
138514 ACAAGTAAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
138542 CTGATCAATG
Statistics
Matches: 164, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
50 88 0.54
51 25 0.15
52 3 0.02
53 1 0.01
54 1 0.01
55 3 0.02
56 3 0.02
57 40 0.24
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:138417 original size:13 final size:14
Alignment explanation
Indices: 138399--138429 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
138389 TTTGATCAAG
138399 GATAAGTGA-AAGT
1 GATAAGTGATAAGT
138412 GATAAGTGATAAGT
1 GATAAGTGATAAGT
138426 GATA
1 GATA
138430 GCTTTGGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (14 bp):
GATAAGTGATAAGT
Found at i:138420 original size:7 final size:7
Alignment explanation
Indices: 138399--138429 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
138389 TTTGATCAAG
138399 GATAAGT
1 GATAAGT
138406 GA-AAGT
1 GATAAGT
138412 GATAAGT
1 GATAAGT
138419 GATAAGT
1 GATAAGT
138426 GATA
1 GATA
138430 GCTTTGGCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (7 bp):
GATAAGT
Found at i:138424 original size:57 final size:57
Alignment explanation
Indices: 138358--138519 Score: 221
Period size: 57 Copynumber: 2.9 Consensus size: 57
138348 GGACAAATGA
* * *
138358 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGAAAGTGAT
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGAT
*
138415 AAGTGATAAGTGATAGCTTTGGCTACACTTATCTGATCAAGGACAAATG-AA---AT
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGAT
*
138468 ---TGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGACAAGT
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA-AAGT
138520 AAAAAGTGGT
Statistics
Matches: 95, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
50 44 0.46
52 2 0.02
53 2 0.02
56 2 0.02
57 45 0.47
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (57 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGAT
Found at i:138431 original size:107 final size:107
Alignment explanation
Indices: 138308--138507 Score: 364
Period size: 107 Copynumber: 1.9 Consensus size: 107
138298 CCATGGCAAC
138308 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
* *
138373 GCTTCGGCTACACTTATTTGATCAAGGATAAGTGAAAGTGAT
66 GCTTCAGCTACACTTATCTGATCAAGGATAAGTGAAAGTGAT
* *
138415 AAGTGATAAGTGATAGCTTTGGCTACACTTATCTGATCAAGGACAAATGAAATTGATAAGTGATA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
138480 GCTTCAGCTACACTTATCTGATCAAGGA
66 GCTTCAGCTACACTTATCTGATCAAGGA
138508 CAAATGACAA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
107 89 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (107 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
GCTTCAGCTACACTTATCTGATCAAGGATAAGTGAAAGTGAT
Found at i:138559 original size:31 final size:31
Alignment explanation
Indices: 138521--138579 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
138511 ATGACAAGTA
138521 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
138552 AAAAGTGGTAGCTTCGGCTACCTGATCA
1 AAAAGTGGTAGCTTCGGCTACCTGATCA
138580 TCGGCTACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAATG
Found at i:138587 original size:46 final size:46
Alignment explanation
Indices: 138534--138625 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
138524 AGTGGTAGCT
* *
138534 TCGGCTACCTGATCAATGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
* * *
138580 TCGGCTACTTGATTAGTGAAAAATGGTAGCTCCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
138626 GTGAATAGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (46 bp):
TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
Found at i:138629 original size:31 final size:31
Alignment explanation
Indices: 138581--138649 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
138571 ACCTGATCAT
* * *
138581 CGGCTACTTGATTAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
* * *
138612 CGGCTACCTGATCAGTGAATAGTGATAGCTT
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
138643 CGGCTAC
1 CGGCTAC
138650 AAGTGACAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (31 bp):
CGGCTACCTGATCAGTGAAAAATGATAGCTC
Found at i:142978 original size:22 final size:23
Alignment explanation
Indices: 142953--142998 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
142943 CAACCAAATC
142953 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
142975 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
142998 A
1 A
142999 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:143004 original size:23 final size:23
Alignment explanation
Indices: 142960--143004 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
142950 ATCAATTCAA
*
142960 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
142983 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
143005 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:146845 original size:26 final size:24
Alignment explanation
Indices: 146815--146862 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
146805 AATAAAAAAA
*
146815 TTAAAAATATAATAAATCAAATATAT
1 TTAAAAACATAA-AAAT-AAATATAT
146841 TTAAAAACATAAAAATAAATAT
1 TTAAAAACATAAAAATAAATAT
146863 TAAAACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 4 0.19
26 11 0.52
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (24 bp):
TTAAAAACATAAAAATAAATATAT
Found at i:146874 original size:22 final size:20
Alignment explanation
Indices: 146833--146878 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
146823 ATAATAAATC
* *
146833 AAATATATTTAAAAACATAA
1 AAATAAATTTAAAAAAATAA
146853 AAATAAATATTAAAACAAATAA
1 AAATAAAT-TTAAAA-AAATAA
146875 AAAT
1 AAAT
146879 GATACTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 6 0.27
22 9 0.41
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATAAATTTAAAAAAATAA
Found at i:146968 original size:15 final size:16
Alignment explanation
Indices: 146938--146970 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
146928 AAATGGCTAT
146938 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
146955 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
146970 A
1 A
146971 AAAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:148294 original size:42 final size:42
Alignment explanation
Indices: 148247--148378 Score: 124
Period size: 42 Copynumber: 3.1 Consensus size: 42
148237 ATGATCTAAG
* * * *
148247 ACACGGCCTTCGACACGCTCGTGTGTATTAAGTCAGTGAGTC
1 ACACGGCCTACGATACGGTCGTGTGTATTAAGTCAGTGAGTT
* * * * *
148289 ACACGGTCTGCAATACGGTCGTGTCTAATT-AGTCAGAGAGTT
1 ACACGGCCTACGATACGGTCGTGTGT-ATTAAGTCAGTGAGTT
** *
148331 ACACAACCTACGATACGGTCGTGTG-ACCTAAGTCAGTGAGTT
1 ACACGGCCTACGATACGGTCGTGTGTA-TTAAGTCAGTGAGTT
148373 ACACGG
1 ACACGG
148379 GCAAAGACAC
Statistics
Matches: 69, Mismatches: 18, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 64 0.93
43 3 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (42 bp):
ACACGGCCTACGATACGGTCGTGTGTATTAAGTCAGTGAGTT
Found at i:149130 original size:17 final size:17
Alignment explanation
Indices: 149108--149140 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
149098 TTTAAGAGAC
149108 ATAACTTTTGATTTGTT
1 ATAACTTTTGATTTGTT
149125 ATAACTTTTGATTTGT
1 ATAACTTTTGATTTGT
149141 AATTATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.06, G:0.12, T:0.58
Consensus pattern (17 bp):
ATAACTTTTGATTTGTT
Found at i:150010 original size:19 final size:19
Alignment explanation
Indices: 149965--150025 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
149955 ATCTAATTAC
149965 AAATATTTAATTATTATATTT
1 AAATATTTAATTA-TA-ATTT
*
149986 AAATATTTAAATATAATTT
1 AAATATTTAATTATAATTT
*
150005 ATATATTCTAATTA-AATTT
1 AAATATT-TAATTATAATTT
150024 AA
1 AA
150026 TAAATAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 16 0.46
20 7 0.20
21 12 0.34
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
AAATATTTAATTATAATTT
Found at i:158688 original size:13 final size:13
Alignment explanation
Indices: 158670--158702 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
158660 TCAAAAGTAG
158670 GATAAATTGGCCA
1 GATAAATTGGCCA
158683 GATAAATTGGCCA
1 GATAAATTGGCCA
*
158696 AATAAAT
1 GATAAAT
158703 GAACATAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.24
Consensus pattern (13 bp):
GATAAATTGGCCA
Found at i:160777 original size:20 final size:20
Alignment explanation
Indices: 160751--160805 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
160741 TGTGGTTCAA
*
160751 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
* *
160771 TTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
160791 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
160806 TTTAACTCGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:161161 original size:45 final size:45
Alignment explanation
Indices: 161092--161322 Score: 282
Period size: 45 Copynumber: 4.9 Consensus size: 45
161082 AAGAGGTGGA
*
161092 CAACATCATGCATAATTCAGGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
161137 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGCCAAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTT-G---AC
*
161186 ATCATGCATAATTCAATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 --CA---A-CA-TC-ATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
161239 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * * *
161284 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA
161323 CCATGGCCGA
Statistics
Matches: 164, Mismatches: 10, Indels: 24
0.83 0.05 0.12
Matches are distributed among these distances:
45 111 0.68
46 3 0.02
47 1 0.01
48 1 0.01
49 2 0.01
51 4 0.02
53 2 0.01
54 1 0.01
55 1 0.01
56 3 0.02
57 35 0.21
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.26
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:161205 original size:57 final size:57
Alignment explanation
Indices: 161144--161257 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
161134 GACCAACATC
*
161144 ATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGCCAACATCATGCATAATTCA
1 ATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGACCAACATCATGCATAATTCA
161201 ATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGACCAACATCATGCATAATTCA
1 ATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGACCAACATCATGCATAATTCA
161258 TGGAAGAATT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (57 bp):
ATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGACCAACATCATGCATAATTCA
Found at i:161275 original size:57 final size:57
Alignment explanation
Indices: 161150--161281 Score: 185
Period size: 57 Copynumber: 2.3 Consensus size: 57
161140 CATCATGCAT
* * * *
161150 AATTCATGGAAGAATTTGAGGAAGCATTTGGCCAACATCATGCATAATTCAATGCAT
1 AATTCAAGGAAGAATTTGAGGAAGCATTTGACCAACATCATGCATAATTCAATGAAG
*
161207 AATTCATGGAAGAATTTGAGGAAGCATTTGACCAACATCATGCATAATTC-ATGGAAG
1 AATTCAAGGAAGAATTTGAGGAAGCATTTGACCAACATCATGCATAATTCAAT-GAAG
* *
161264 AATTTAAGGAAGCATTTG
1 AATTCAAGGAAGAATTTG
161282 GCCAACATCA
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
56 2 0.03
57 66 0.97
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (57 bp):
AATTCAAGGAAGAATTTGAGGAAGCATTTGACCAACATCATGCATAATTCAATGAAG
Found at i:161275 original size:102 final size:102
Alignment explanation
Indices: 161099--161300 Score: 386
Period size: 102 Copynumber: 2.0 Consensus size: 102
161089 GGACAACATC
161099 ATGCATAATTCAGGGAAGAATTTGAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAA
1 ATGCATAATTCAGGGAAGAATTTGAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAA
*
161164 TTTGAGGAAGCATTTGGCCAACATCATGCATAATTCA
66 TTTAAGGAAGCATTTGGCCAACATCATGCATAATTCA
*
161201 ATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAA
1 ATGCATAATTCAGGGAAGAATTTGAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAA
161266 TTTAAGGAAGCATTTGGCCAACATCATGCATAATT
66 TTTAAGGAAGCATTTGGCCAACATCATGCATAATT
161301 TAAGGAACAA
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 98 1.00
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (102 bp):
ATGCATAATTCAGGGAAGAATTTGAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAA
TTTAAGGAAGCATTTGGCCAACATCATGCATAATTCA
Found at i:164505 original size:20 final size:20
Alignment explanation
Indices: 164480--164534 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
164470 TGTGGTTCAA
*
164480 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
164500 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
164520 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
164535 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:164871 original size:45 final size:45
Alignment explanation
Indices: 164821--165035 Score: 367
Period size: 45 Copynumber: 4.8 Consensus size: 45
164811 AAGAGGTGGA
164821 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
164866 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
164911 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
164956 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * * *
165001 CAACATCATGCATAATTTAAGGAACAAATTGAGGA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGA
165036 TGCACCATGG
Statistics
Matches: 161, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 161 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:174516 original size:22 final size:23
Alignment explanation
Indices: 174482--174529 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
174472 AATTCGAGGA
*
174482 TTTGTTTATATTTTT-TTATTGT
1 TTTGTTTATATTTTTAATATTGT
174504 TTTG-TTATCATTTTTAATATTGT
1 TTTGTTTAT-ATTTTTAATATTGT
174527 TTT
1 TTT
174530 ACAACCATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 9 0.39
ACGTcount: A:0.17, C:0.02, G:0.08, T:0.73
Consensus pattern (23 bp):
TTTGTTTATATTTTTAATATTGT
Found at i:180832 original size:22 final size:23
Alignment explanation
Indices: 180807--180852 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
180797 CAACCAAATC
180807 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
180829 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
180852 A
1 A
180853 CGTCATTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:180858 original size:23 final size:23
Alignment explanation
Indices: 180814--180858 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
180804 ATCAATTCAA
*
180814 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
180837 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
180859 TAACGCCCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:182281 original size:93 final size:93
Alignment explanation
Indices: 182169--182340 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
182159 CGCCCATAAG
*
182169 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
182233 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
182262 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
182327 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
182341 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:182335 original size:46 final size:46
Alignment explanation
Indices: 182162--182337 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
182152 TGTAACCCGC
* *
182162 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
182208 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
182258 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
182301 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
182338 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:196512 original size:25 final size:25
Alignment explanation
Indices: 196482--196530 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
196472 GACCCACAAC
196482 TCGTGTGAGCATTCTGATTTACAGG
1 TCGTGTGAGCATTCTGATTTACAGG
*
196507 TCGTGTGAGCATTTTGATTTACAG
1 TCGTGTGAGCATTCTGATTTACAG
196531 CTCATGTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.20, C:0.14, G:0.27, T:0.39
Consensus pattern (25 bp):
TCGTGTGAGCATTCTGATTTACAGG
Found at i:196542 original size:25 final size:25
Alignment explanation
Indices: 196489--196543 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
196479 AACTCGTGTG
* * *
196489 AGCATTCTGATTTACAGGTCGTGTG
1 AGCATTCTGATTTACAGCTCATGTA
*
196514 AGCATTTTGATTTACAGCTCATGTA
1 AGCATTCTGATTTACAGCTCATGTA
196539 AGCAT
1 AGCAT
196544 AAATGTACAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.36
Consensus pattern (25 bp):
AGCATTCTGATTTACAGCTCATGTA
Found at i:198980 original size:29 final size:30
Alignment explanation
Indices: 198930--198988 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 30
198920 CCTGTATTTG
*
198930 GAATTTATATTTTTTATTTTTTGTTTTAAA
1 GAATTTATATTTTTTATTTTTTGATTTAAA
198960 GAATTTAT-TTTTTTATTTTTTGATTTAAA
1 GAATTTATATTTTTTATTTTTTGATTTAAA
198989 AATATAAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 20 0.71
30 8 0.29
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (30 bp):
GAATTTATATTTTTTATTTTTTGATTTAAA
Found at i:210732 original size:29 final size:30
Alignment explanation
Indices: 210681--210737 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
210671 CACGGGCTGC
210681 CACATGGGCGTGTGGCCAACCCGTGTGGCT
1 CACATGGGCGTGTGGCCAACCCGTGTGGCT
*
210711 CACA-GGGCGTGT-GCTCAGCCCGTGTGG
1 CACATGGGCGTGTGGC-CAACCCGTGTGG
210738 GAATGGTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 2 0.08
29 19 0.76
30 4 0.16
ACGTcount: A:0.12, C:0.30, G:0.39, T:0.19
Consensus pattern (30 bp):
CACATGGGCGTGTGGCCAACCCGTGTGGCT
Found at i:213028 original size:31 final size:31
Alignment explanation
Indices: 212983--213056 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 31
212973 TTGCTGTTTT
* *
212983 TTTTTA-AAAATTTGAAAGGT-TTATTAAAA
1 TTTTTACAAATTTTGAAAGGTCTAATTAAAA
*
213012 TTTTTTCAAGATTTTGAAAGGTCTAATTAAAA
1 TTTTTACAA-ATTTTGAAAGGTCTAATTAAAA
213044 TTTTTACAAATTT
1 TTTTTACAAATTT
213057 AAAGAGCCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 5 0.13
30 2 0.05
31 15 0.39
32 16 0.42
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.47
Consensus pattern (31 bp):
TTTTTACAAATTTTGAAAGGTCTAATTAAAA
Found at i:213571 original size:17 final size:17
Alignment explanation
Indices: 213549--213588 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
213539 AATATTTTAT
213549 TATTATATAGTGAAATA
1 TATTATATAGTGAAATA
**
213566 TATTATATAGTTTAATA
1 TATTATATAGTGAAATA
213583 TATTAT
1 TATTAT
213589 TTTGTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (17 bp):
TATTATATAGTGAAATA
Found at i:213722 original size:34 final size:33
Alignment explanation
Indices: 213655--213725 Score: 99
Period size: 34 Copynumber: 2.1 Consensus size: 33
213645 TAAAAATATT
*
213655 ATATTTTATATAATTTATATCATAATTATAAAA
1 ATATTTTATATAAATTATATCATAATTATAAAA
*
213688 ATATTTTA-ATAAATTATATTATAATATTATAAAA
1 ATATTTTATATAAATTATATCAT-A-ATTATAAAA
213722 ATAT
1 ATAT
213726 AATAGGTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
32 12 0.35
33 9 0.26
34 13 0.38
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (33 bp):
ATATTTTATATAAATTATATCATAATTATAAAA
Found at i:221755 original size:25 final size:25
Alignment explanation
Indices: 221722--221769 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
221712 TTGTAAATCA
221722 GAAAAATATCTTTAGA-AATTTTCT
1 GAAAAATATCTTTAGAGAATTTTCT
*
221746 GAAATAATATGTTTAGAGAATTTT
1 GAAA-AATATCTTTAGAGAATTTT
221770 TTCTCTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 11 0.52
26 6 0.29
ACGTcount: A:0.42, C:0.04, G:0.12, T:0.42
Consensus pattern (25 bp):
GAAAAATATCTTTAGAGAATTTTCT
Found at i:234956 original size:35 final size:35
Alignment explanation
Indices: 234900--234969 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
234890 ATATCTGTAA
*
234900 CTGTGTCTGCATCTGAAATGGG-CTCAGGCCCGAAT
1 CTGTATCTGCATCTGAAATGGGCCT-AGGCCCGAAT
* *
234935 CTGTATCTGTATCTGACATGGGCCTAGGCCCGAAT
1 CTGTATCTGCATCTGAAATGGGCCTAGGCCCGAAT
234970 ATGAACCTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 29 0.94
36 2 0.06
ACGTcount: A:0.20, C:0.26, G:0.27, T:0.27
Consensus pattern (35 bp):
CTGTATCTGCATCTGAAATGGGCCTAGGCCCGAAT
Found at i:238320 original size:63 final size:63
Alignment explanation
Indices: 238245--238372 Score: 247
Period size: 63 Copynumber: 2.0 Consensus size: 63
238235 TTGAGTTTTG
*
238245 GAAGTCCAGTAAGGTAATGTAGTTTCTAACCCTAATTTATGATTTTTCTAATTTTGAAAATGT
1 GAAGTCCAGTAAGATAATGTAGTTTCTAACCCTAATTTATGATTTTTCTAATTTTGAAAATGT
238308 GAAGTCCAGTAAGATAATGTAGTTTCTAACCCTAATTTATGATTTTTCTAATTTTGAAAATGT
1 GAAGTCCAGTAAGATAATGTAGTTTCTAACCCTAATTTATGATTTTTCTAATTTTGAAAATGT
238371 GA
1 GA
238373 TTTTAGTGAT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.41
Consensus pattern (63 bp):
GAAGTCCAGTAAGATAATGTAGTTTCTAACCCTAATTTATGATTTTTCTAATTTTGAAAATGT
Found at i:243766 original size:33 final size:33
Alignment explanation
Indices: 243724--243796 Score: 130
Period size: 33 Copynumber: 2.2 Consensus size: 33
243714 GCTTGGTATC
*
243724 GATGT-AACATAAAAAATTACAATGAAAAGACT
1 GATGTGAACATAAAAAATTACAATGAAAAAACT
243756 GATGTGAACATAAAAAATTACAATGAAAAAACT
1 GATGTGAACATAAAAAATTACAATGAAAAAACT
243789 GATGTGAA
1 GATGTGAA
243797 TTTTTCTTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
32 5 0.13
33 34 0.87
ACGTcount: A:0.55, C:0.08, G:0.15, T:0.22
Consensus pattern (33 bp):
GATGTGAACATAAAAAATTACAATGAAAAAACT
Found at i:258648 original size:16 final size:18
Alignment explanation
Indices: 258613--258649 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
258603 TTGGCTGGTT
258613 AGATGAAAGAAATGAAACA
1 AGATGAAAGAAA-GAAACA
258632 AGATGAAA-AAA-AAACA
1 AGATGAAAGAAAGAAACA
258648 AG
1 AG
258650 TTTCTCTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.39
18 3 0.17
19 8 0.44
ACGTcount: A:0.68, C:0.05, G:0.19, T:0.08
Consensus pattern (18 bp):
AGATGAAAGAAAGAAACA
Found at i:261712 original size:34 final size:34
Alignment explanation
Indices: 261669--261735 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
261659 AGGTGATCTT
*
261669 ACATTTAATAAAATAAACAACAAAATTTTACATC
1 ACATTTAATAAAACAAACAACAAAATTTTACATC
261703 ACATTTAATAAAACAAACAACAAAATTTTACAT
1 ACATTTAATAAAACAAACAACAAAATTTTACAT
261736 TTTAACAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (34 bp):
ACATTTAATAAAACAAACAACAAAATTTTACATC
Found at i:273571 original size:10 final size:10
Alignment explanation
Indices: 273558--273613 Score: 67
Period size: 10 Copynumber: 5.6 Consensus size: 10
273548 GATTAAAATA
*
273558 TATACACATT
1 TATATACATT
273568 TATATACATT
1 TATATACATT
*
273578 TACATACATT
1 TATATACATT
*
273588 CATATACATT
1 TATATACATT
* *
273598 TACATGCATT
1 TATATACATT
273608 TATATA
1 TATATA
273614 AAATGGCATA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
10 37 1.00
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (10 bp):
TATATACATT
Found at i:273592 original size:20 final size:20
Alignment explanation
Indices: 273563--273613 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
273553 AAATATATAC
273563 ACATTTATATACATTTACAT
1 ACATTTATATACATTTACAT
*
273583 ACATTCATATACATTTACAT
1 ACATTTATATACATTTACAT
*
273603 GCATTTATATA
1 ACATTTATATA
273614 AAATGGCATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (20 bp):
ACATTTATATACATTTACAT
Found at i:282781 original size:18 final size:19
Alignment explanation
Indices: 282738--282782 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
282728 CTCATCAATT
282738 TTAAAAT-AATTTAATAAA
1 TTAAAATAAATTTAATAAA
282756 --AAATATAAATTTAA-AAA
1 TTAAA-ATAAATTTAATAAA
282773 TTAAAATAAA
1 TTAAAATAAA
282783 CGAAAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
16 3 0.13
17 5 0.22
18 12 0.52
19 3 0.13
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
TTAAAATAAATTTAATAAA
Found at i:285714 original size:2 final size:2
Alignment explanation
Indices: 285709--285741 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
285699 CTCTCTCTCT
*
285709 CA CA CA CA CA CA CA GA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
285742 GTTCTGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.48, G:0.03, T:0.00
Consensus pattern (2 bp):
CA
Found at i:292445 original size:69 final size:69
Alignment explanation
Indices: 292360--292719 Score: 184
Period size: 69 Copynumber: 5.2 Consensus size: 69
292350 GGTAGCTGGA
* * * * ** *
292360 AGCTTTACTCTAGCTAACTATTTTAAAGGTTGTAGTTTTTCACCTACGAACCTTAATATTACAAT
1 AGCTTTGCTCTTGCTAACTGTTTTAAAGGTTGCAACTTTTCACCTACGAACCTTAATATTACAAC
*
292425 TAGG
66 TAAG
* * * * * * *
292429 AGTTTTGCTCTTGCTAATTGTTTTAGAGGTTGCAACTTTTCACCTGCGGACCTTAATATTATAGC
1 AGCTTTGCTCTTGCTAACTGTTTTAAAGGTTGCAACTTTTCACCTACGAACCTTAATATTACAAC
292494 TAAG
66 TAAG
* ** ** ** * * * *
292498 AGCTTTGCTCTTACTAACTGTTTTGGAGGTTGCGGCTATTT-GTCTACGAATCTTAACATTATAG
1 AGCTTTGCTCTTGCTAACTGTTTTAAAGGTTGCAACT-TTTCACCTACGAACCTTAATATTACAA
* *
292562 TTATG
65 CTAAG
* * * ** **** * * * * **
292567 AGCTTTGCTCTCGTTAATTGTTTTGGAGGTTGTGGTTTTTCGCCTGCAAACCTTAATATGACAGT
1 AGCTTTGCTCTTGCTAACTGTTTTAAAGGTTGCAACTTTTCACCTACGAACCTTAATATTACAAC
*
292632 TGAG
66 TAAG
* ** * * * * * * *
292636 AGGTTTGCTCTCACTAACTGTTTTAGAGGTTACAA-TTCTTCGCCTGCGAACCTTAATATGATAG
1 AGCTTTGCTCTTGCTAACTGTTTTAAAGGTTGCAACTT-TTCACCTACGAACCTTAATATTACAA
*
292700 CTAGG
65 CTAAG
*
292705 AGCTTTGCTTTTGCT
1 AGCTTTGCTCTTGCT
292720 CACTATGTTG
Statistics
Matches: 226, Mismatches: 62, Indels: 6
0.77 0.21 0.02
Matches are distributed among these distances:
68 5 0.02
69 218 0.96
70 3 0.01
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.40
Consensus pattern (69 bp):
AGCTTTGCTCTTGCTAACTGTTTTAAAGGTTGCAACTTTTCACCTACGAACCTTAATATTACAAC
TAAG
Found at i:292691 original size:138 final size:136
Alignment explanation
Indices: 292294--292713 Score: 392
Period size: 138 Copynumber: 3.0 Consensus size: 136
292284 AATTGAGAGT
* * * * *
292294 TTTGCTCTTGTTAACTGTCTTGGATGTTGGTGCTTTTCGTCTGCAAACCTTAATATGGTAGCTG-
1 TTTGCTCTTGTTAATTGTTTTGGAGGTTGG-GCTTTTCGCCTGCAAACCTTAATATGATAGCTGA
* * * * * * *
292358 GAAGCTTTACTCTAGCTAACTATTTTAAAGGTTGTAGTTTTTCACCTACGAACCTTAATATTACA
65 G-AGCTTTGCTCTA-CTAACTGTTTTAGAGGTTGCAGTTATTCGCCTACGAACCTTAATATTATA
* *
292423 ATTAGGAGT
128 GTTAGGAGC
* * ** * ** * *
292432 TTTGCTCTTGCTAATTGTTTTAGAGGTTGCAACTTTTCACCTGCGGACCTTAATATTATAGCTAA
1 TTTGCTCTTGTTAATTGTTTTGGAGGTTG-GGCTTTTCGCCTGCAAACCTTAATATGATAGCTGA
* * * * * * *
292497 GAGCTTTGCTCTTACTAACTGTTTTGGAGGTTGCGGCTATTTGTCTACGAATCTTAACATTATAG
65 GAGCTTTGCTC-TACTAACTGTTTTAGAGGTTGCAGTTATTCGCCTACGAACCTTAATATTATAG
*
292562 TTATGAGC
129 TTAGGAGC
* * * *
292570 TTTGCTCTCGTTAATTGTTTTGGAGGTTGTGGTTTTTCGCCTGCAAACCTTAATATGACAGTTGA
1 TTTGCTCTTGTTAATTGTTTTGGAGGTTG-GGCTTTTCGCCTGCAAACCTTAATATGATAGCTGA
* * * * * *
292635 GAGGTTTGCTCTCACTAACTGTTTTAGAGGTTACAATTCTTCGCCTGCGAACCTTAATATGATAG
65 GAGCTTTGCTCT-ACTAACTGTTTTAGAGGTTGCAGTTATTCGCCTACGAACCTTAATATTATAG
*
292700 CTAGGAGC
129 TTAGGAGC
292708 TTTGCT
1 TTTGCT
292714 TTTGCTCACT
Statistics
Matches: 218, Mismatches: 60, Indels: 8
0.76 0.21 0.03
Matches are distributed among these distances:
137 1 0.00
138 214 0.98
139 3 0.01
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.40
Consensus pattern (136 bp):
TTTGCTCTTGTTAATTGTTTTGGAGGTTGGGCTTTTCGCCTGCAAACCTTAATATGATAGCTGAG
AGCTTTGCTCTACTAACTGTTTTAGAGGTTGCAGTTATTCGCCTACGAACCTTAATATTATAGTT
AGGAGC
Found at i:320200 original size:19 final size:19
Alignment explanation
Indices: 320176--320221 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
320166 ATGTTTGAGC
*
320176 ACTCAATTTAGTAAAAATG
1 ACTCAATTTAGTAAAAAGG
320195 ACTCAATTTAGTAAAAAGG
1 ACTCAATTTAGTAAAAAGG
*
320214 ACTAAATT
1 ACTCAATT
320222 GCAATAGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (19 bp):
ACTCAATTTAGTAAAAAGG
Found at i:323016 original size:24 final size:24
Alignment explanation
Indices: 322989--323051 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
322979 AGAATCATTT
*
322989 AGAATACACCATAAGACATCGTAC
1 AGAATACACCATAAGACATCATAC
* *
323013 AGAA-ATCACCATAAGGCATCATAT
1 AGAATA-CACCATAAGACATCATAC
* *
323037 AGAGTACGCCATAAG
1 AGAATACACCATAAG
323052 GCTTCATAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
23 1 0.03
24 30 0.94
25 1 0.03
ACGTcount: A:0.44, C:0.22, G:0.16, T:0.17
Consensus pattern (24 bp):
AGAATACACCATAAGACATCATAC
Found at i:324795 original size:28 final size:28
Alignment explanation
Indices: 324763--324826 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
324753 CTTACGTTTT
*
324763 TTACACACATAGGCAGAGATTTACACAC
1 TTACACACATAGGCAAAGATTTACACAC
324791 TTACACACATAGGCAAAGATTTACACAC
1 TTACACACATAGGCAAAGATTTACACAC
324819 TTACACAC
1 TTACACAC
324827 GCAGAGATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.41, C:0.27, G:0.11, T:0.22
Consensus pattern (28 bp):
TTACACACATAGGCAAAGATTTACACAC
Found at i:325719 original size:16 final size:17
Alignment explanation
Indices: 325653--325741 Score: 60
Period size: 16 Copynumber: 5.3 Consensus size: 17
325643 GCCCTATGTT
* *
325653 TTATTTA-ATTTTATAA
1 TTATTTATATTATATGA
* * **
325669 TTATTTATTTTATTTTC
1 TTATTTATATTATATGA
325686 TTATATTATATGTTATATGA
1 TTAT-TTATA--TTATATGA
325706 TTATTT-TATTATATG-
1 TTATTTATATTATATGA
*
325721 TTATTTATTTTATAT-A
1 TTATTTATATTATATGA
325737 TTATT
1 TTATT
325742 ATTACATATT
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
15 6 0.11
16 26 0.46
17 8 0.14
18 6 0.11
19 2 0.04
20 9 0.16
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.66
Consensus pattern (17 bp):
TTATTTATATTATATGA
Found at i:325738 original size:23 final size:23
Alignment explanation
Indices: 325653--325740 Score: 71
Period size: 23 Copynumber: 3.9 Consensus size: 23
325643 GCCCTATGTT
325653 TTATTTAATTTTATA-A-T-TAT-
1 TTATTT-ATTTTATATATTATATG
*
325673 TTATTTTATTTTCTTATATTATATG
1 TTA-TTTATTTT-ATATATTATATG
*
325698 TTATATGATTATT-T-TATTATATG
1 TTAT-TTATT-TTATATATTATATG
325721 TTATTTATTTTATATATTAT
1 TTATTTATTTTATATATTAT
325741 TATTACATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 17
0.73 0.04 0.23
Matches are distributed among these distances:
20 8 0.15
21 7 0.13
22 6 0.11
23 20 0.36
24 5 0.09
25 7 0.13
26 2 0.04
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (23 bp):
TTATTTATTTTATATATTATATG
Found at i:325740 original size:7 final size:7
Alignment explanation
Indices: 325687--325765 Score: 61
Period size: 7 Copynumber: 10.9 Consensus size: 7
325677 TTTATTTTCT
325687 TATATTA
1 TATATTA
*
325694 TATGTTA
1 TATATTA
325701 TATGATTA
1 TAT-ATTA
*
325709 TTTTATTA
1 -TATATTA
*
325717 TATGTTA
1 TATATTA
*
325724 TTTATTTTA
1 --TATATTA
325733 TATATTA
1 TATATTA
325740 T-TATTA
1 TATATTA
*
325746 CATATTA
1 TATATTA
325753 TATATTA
1 TATATTA
*
325760 CATATT
1 TATATT
325766 TTTATATATT
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
6 5 0.09
7 37 0.65
8 7 0.12
9 8 0.14
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.59
Consensus pattern (7 bp):
TATATTA
Found at i:325760 original size:14 final size:13
Alignment explanation
Indices: 325725--325770 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
325715 TATATGTTAT
*
325725 TTATT-TTATATA
1 TTATTATTACATA
325737 TTATTATTACATA
1 TTATTATTACATA
325750 TTATATATTACATA
1 TTAT-TATTACATA
*
325764 TTTTTAT
1 TTATTAT
325771 ATATTTTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
12 5 0.17
13 13 0.43
14 12 0.40
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (13 bp):
TTATTATTACATA
Found at i:338294 original size:220 final size:219
Alignment explanation
Indices: 337912--338691 Score: 1144
Period size: 220 Copynumber: 3.6 Consensus size: 219
337902 AGGTTAAAGT
* * *
337912 ATAGCAGATCTGGCCTTCAGGTGTTCACGCTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
1 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
* *
337977 TGTTAGAGAACAAATCGAAGAAGCAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGA
66 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCG-AGA
*
338042 CATAGCAGATCTGACCTTTTGATGTTTTCACATCGAAGCAGATCCACA-ATGATTTGGCATTCTT
130 CATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAGATCCA-AGATGATTTGGCATTCTT
338106 GTGTTTACAAGGAGCAAATCGAAGAC
194 GTGTTTACAAGGAGCAAATCGAAGAC
* *
338132 ATAGCAGAGCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTAT
1 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
* *
338197 TGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCTATATTCGACGGAGAGCAGATCGTAGA
66 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCG-AGA
338262 CATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTG
130 CATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTG
338327 TGTTTACAAGGAGCAAATCGAAGAC
195 TGTTTACAAGGAGCAAATCGAAGAC
*
338352 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGACATCTCTGTAT
1 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
* *
338417 TGTCAGAGAACCAATTGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA-C---AC
66 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAGAC
* * *
338478 ATAGCAGATCTAACCTTCAGATGTTTAT-AC-T-GAAGCAGATCCAAGATGATTTGGCATCCTTG
131 ATAGCAGATCTGACCTTTAGATGTTT-TCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTG
*
338540 TGTTTACAAGGAGCAAATTGAAGAC
195 TGTTTACAAGGAGCAAATCGAAGAC
* * * * * ** * *
338565 ATAACAGATTTGGCTTTCACGTGTTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTAT
1 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
* * * * * ** * * *
338630 TGTCAGGGAACAAATTGAAGAAGCATATTTGGCGTCTCTGTGTTCGACAGAGAGTAGATCGA
66 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGA
338692 AGATATCAAC
Statistics
Matches: 513, Mismatches: 42, Indels: 14
0.90 0.07 0.02
Matches are distributed among these distances:
213 157 0.31
214 2 0.00
215 28 0.05
216 1 0.00
219 2 0.00
220 323 0.63
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (219 bp):
ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAGAC
ATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGT
GTTTACAAGGAGCAAATCGAAGAC
Found at i:338437 original size:87 final size:89
Alignment explanation
Indices: 338254--338417 Score: 235
Period size: 89 Copynumber: 1.9 Consensus size: 89
338244 CGGAGAGCAG
* * * *
338254 ATCGTAGACATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTCAGATGTTTACACATCGAAGCAGATCCAAGATGATTTGA
* *
338319 CATTCTTGTGTTTACAAGGAGCAA
66 CATTCTTGTATTTACAAGGAACAA
*
338343 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACAC-T-GAAGCAGATCCAAGATGATTTGA
1 ATCGAAGACATAGCAGATCTGACCTTCAGATGTTTACACATCGAAGCAGATCCAAGATGATTTGA
338406 CA-TCTCTGTATT
66 CATTCT-TGTATT
338418 GTCAGAGAAC
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
86 3 0.04
87 29 0.43
88 1 0.01
89 35 0.51
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTCAGATGTTTACACATCGAAGCAGATCCAAGATGATTTGA
CATTCTTGTATTTACAAGGAACAA
Found at i:339000 original size:17 final size:17
Alignment explanation
Indices: 338978--339010 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
338968 AATAATTTTC
338978 AAACCCAAACTTAAACT
1 AAACCCAAACTTAAACT
*
338995 AAACCCACACTTAAAC
1 AAACCCAAACTTAAAC
339011 CGTTATACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (17 bp):
AAACCCAAACTTAAACT
Found at i:339553 original size:28 final size:28
Alignment explanation
Indices: 339521--339581 Score: 122
Period size: 28 Copynumber: 2.2 Consensus size: 28
339511 CTTACGTTTT
339521 TTACACACATAGGCAGAGATTTACACAC
1 TTACACACATAGGCAGAGATTTACACAC
339549 TTACACACATAGGCAGAGATTTACACAC
1 TTACACACATAGGCAGAGATTTACACAC
339577 TTACA
1 TTACA
339582 ACGCAGAGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.39, C:0.25, G:0.13, T:0.23
Consensus pattern (28 bp):
TTACACACATAGGCAGAGATTTACACAC
Found at i:340471 original size:16 final size:17
Alignment explanation
Indices: 340405--340493 Score: 60
Period size: 16 Copynumber: 5.3 Consensus size: 17
340395 GCCCTATGTT
* *
340405 TTATTTAT-TTTTATAA
1 TTATTTATATTATATGA
* * **
340421 TTATTTATTTTATTTTC
1 TTATTTATATTATATGA
340438 TTATATTATATGTTATATGA
1 TTAT-TTATA--TTATATGA
340458 TTATTT-TATTATATG-
1 TTATTTATATTATATGA
*
340473 TTATTTATTTTATAT-A
1 TTATTTATATTATATGA
340489 TTATT
1 TTATT
340494 ACATATTATT
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
15 6 0.10
16 27 0.47
17 8 0.14
18 6 0.10
19 2 0.03
20 9 0.16
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.67
Consensus pattern (17 bp):
TTATTTATATTATATGA
Found at i:340490 original size:23 final size:22
Alignment explanation
Indices: 340405--340492 Score: 83
Period size: 23 Copynumber: 3.9 Consensus size: 22
340395 GCCCTATGTT
*
340405 TTATTTATTTTTATAAT-TAT-
1 TTATTTATTTTTATATTATATG
340425 TTATTTTATTTTCTTATATTATATG
1 TTA-TTTA-TTT-TTATATTATATG
*
340450 TTATATGATTATTT-TATTATATG
1 TTAT-TTATT-TTTATATTATATG
340473 TTATTTATTTTATATATTAT
1 TTATTTATTTT-TATATTAT
340493 TACATATTAT
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
20 3 0.05
21 6 0.11
22 8 0.14
23 25 0.45
24 8 0.14
25 6 0.11
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.67
Consensus pattern (22 bp):
TTATTTATTTTTATATTATATG
Found at i:340509 original size:14 final size:14
Alignment explanation
Indices: 340457--340519 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 14
340447 ATGTTATATG
*
340457 ATTATTTTATTATAT
1 ATTA-TTTATTACAT
* **
340472 GTTATTTATTTTAT
1 ATTATTTATTACAT
340486 A-TA-TTATTACAT
1 ATTATTTATTACAT
340498 ATTATTTATTACAT
1 ATTATTTATTACAT
340512 ATT-TTTAT
1 ATTATTTAT
340520 ATATTTTGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
12 8 0.20
13 9 0.22
14 21 0.51
15 3 0.07
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (14 bp):
ATTATTTATTACAT
Found at i:340513 original size:26 final size:26
Alignment explanation
Indices: 340463--340513 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
340453 TATGATTATT
* * **
340463 TTATTATATGTTATTTATTTTATATA
1 TTATTACATATTATTTATTACATATA
340489 TTATTACATATTATTTATTACATAT
1 TTATTACATATTATTTATTACATAT
340514 TTTTATATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (26 bp):
TTATTACATATTATTTATTACATATA
Found at i:344889 original size:46 final size:46
Alignment explanation
Indices: 344836--345011 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
344826 TATTTGGGCA
344836 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * * *
344882 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* * *
344929 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTCTGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
344975 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
345012 GCGGGTTAGA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 65 0.61
47 31 0.29
48 1 0.01
50 4 0.04
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:344991 original size:93 final size:93
Alignment explanation
Indices: 344832--345004 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
344822 GGGATATTTG
* * *
344832 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
344897 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
344925 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTCTGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
344990 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
345005 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:351004 original size:21 final size:21
Alignment explanation
Indices: 350964--351021 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
350954 ATAATAAATC
*
350964 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
350984 AACA-AATATTAAAACAAATAA
1 AA-ATAATATTAAAACAAATAA
*
351005 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
351022 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
20 9 0.28
21 23 0.72
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:351293 original size:42 final size:44
Alignment explanation
Indices: 351235--351350 Score: 132
Period size: 43 Copynumber: 2.7 Consensus size: 44
351225 GGCATTGACT
* *
351235 TTTGATTTATGTGTAAGACCATGTTTGGTACA-TCGGCATCG-TA
1 TTTGATTTATGTGTAAGACCATGTCTGGGACAGT-GGCATCGATA
*
351278 TTTGATTT-TGTGTAAGACCCTGTCTGGGACAGTGGCATCGATA
1 TTTGATTTATGTGTAAGACCATGTCTGGGACAGTGGCATCGATA
** * *
351321 TTTGA-TTACATGTAAGACTACGTCTGGGAC
1 TTTGATTTATGTGTAAGACCATGTCTGGGAC
351351 GTTGGCACTG
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
42 29 0.47
43 33 0.53
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (44 bp):
TTTGATTTATGTGTAAGACCATGTCTGGGACAGTGGCATCGATA
Done.