Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 100 of 250
Found at i:32542543 original size:37 final size:37
Alignment explanation
Indices: 32542502--32542576 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
32542492 TACCTAATAT
32542502 TGATTCTGATTCTGTCACCTGATTCTGATTCTGATTC
1 TGATTCTGATTCTGTCACCTGATTCTGATTCTGATTC
32542539 TGATTCTGATTCTGTCACCTGATTCTGATTCTGATTC
1 TGATTCTGATTCTGTCACCTGATTCTGATTCTGATTC
32542576 T
1 T
32542577 CATTTTGACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.47
Consensus pattern (37 bp):
TGATTCTGATTCTGTCACCTGATTCTGATTCTGATTC
Found at i:32548488 original size:28 final size:28
Alignment explanation
Indices: 32548448--32548501 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
32548438 ACTCAATAAG
32548448 ATTTAATTCTATGTCTCATTCATCACTT
1 ATTTAATTCTATGTCTCATTCATCACTT
32548476 ATTTAATTCTATGTCTCATTCATCAC
1 ATTTAATTCTATGTCTCATTCATCAC
32548502 CTAATTTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.26, C:0.22, G:0.04, T:0.48
Consensus pattern (28 bp):
ATTTAATTCTATGTCTCATTCATCACTT
Found at i:32548506 original size:24 final size:25
Alignment explanation
Indices: 32548451--32548507 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 25
32548441 CAATAAGATT
*
32548451 TAATTCTATGTCTCATTCATCACTTATT
1 TAATTCTATGTCTCATTCATCAC---TC
32548479 TAATTCTATGTCTCATTCATCAC-C
1 TAATTCTATGTCTCATTCATCACTC
32548503 TAATT
1 TAATT
32548508 TCATTTCTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 5 0.18
28 23 0.82
ACGTcount: A:0.26, C:0.23, G:0.04, T:0.47
Consensus pattern (25 bp):
TAATTCTATGTCTCATTCATCACTC
Found at i:32549441 original size:55 final size:53
Alignment explanation
Indices: 32549316--32549504 Score: 227
Period size: 55 Copynumber: 3.5 Consensus size: 53
32549306 AACTTACCAT
* * * *
32549316 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTACCTTA-TGAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATTGAACTCATCAA
* *
32549369 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATTGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATTG-AACTCATCAA
* * * * *
32549424 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATTGAACTCATCAA
*
32549478 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
32549505 ATATCTTTAT
Statistics
Matches: 117, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 2 0.02
53 33 0.28
54 36 0.31
55 44 0.38
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATTGAACTCATCAA
Found at i:32549605 original size:45 final size:45
Alignment explanation
Indices: 32549549--32549634 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
32549539 CCTTAATCAA
* *
32549549 TGCCGATGCCATGTCTTGACATGGTTTTACACGGGATCCTTGCCT
1 TGCCAATGCCATGTCTTGACATGGTCTTACACGGGATCCTTGCCT
* *
32549594 TGCCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
1 TGCCAATGCCATGTCTTGACATGGTCTTACACGGGATCCTT
32549635 AACCGTCAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (45 bp):
TGCCAATGCCATGTCTTGACATGGTCTTACACGGGATCCTTGCCT
Found at i:32549688 original size:44 final size:44
Alignment explanation
Indices: 32549639--32549724 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 44
32549629 ATCCTTAACC
* *
32549639 GTCAATTCCTCCTTAAATGCCATGTTATAAACATGGAATTTTTT
1 GTCAATTCCTCCTTAAATGCCATGGTACAAACATGGAATTTTTT
* * * * *
32549683 GTCAATTCTTTCTTAATTGCCATGGTACAACCATGGACTTTT
1 GTCAATTCCTCCTTAAATGCCATGGTACAAACATGGAATTTT
32549725 AGATATCAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.41
Consensus pattern (44 bp):
GTCAATTCCTCCTTAAATGCCATGGTACAAACATGGAATTTTTT
Found at i:32556103 original size:20 final size:20
Alignment explanation
Indices: 32556080--32556194 Score: 95
Period size: 20 Copynumber: 5.8 Consensus size: 20
32556070 AAGTCACCAA
32556080 TAATGCAGACAAGCTGCCAG
1 TAATGCAGACAAGCTGCCAG
** * *
32556100 TAATGTGGTCAAGCTACCAG
1 TAATGCAGACAAGCTGCCAG
* * * *
32556120 TAATGCAAATAAACTGCTAG
1 TAATGCAGACAAGCTGCCAG
* *
32556140 TAGTGCAGATAAGCTGCCAG
1 TAATGCAGACAAGCTGCCAG
* * * *
32556160 TAATGTAGATAAACTGGCAG
1 TAATGCAGACAAGCTGCCAG
*
32556180 TGATGCAGACAAGCT
1 TAATGCAGACAAGCT
32556195 ACTTATAATA
Statistics
Matches: 71, Mismatches: 24, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 71 1.00
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (20 bp):
TAATGCAGACAAGCTGCCAG
Found at i:32556154 original size:40 final size:40
Alignment explanation
Indices: 32556109--32556196 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
32556099 GTAATGTGGT
32556109 CAAGCTACCAGTAATGCAAATAAACT-GCTAGT-AGTGCAGA
1 CAAGCTACCAGTAATGCAAATAAACTGGC-AGTGA-TGCAGA
* * * *
32556149 TAAGCTGCCAGTAATGTAGATAAACTGGCAGTGATGCAGA
1 CAAGCTACCAGTAATGCAAATAAACTGGCAGTGATGCAGA
32556189 CAAGCTAC
1 CAAGCTAC
32556197 TTATAATATG
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
40 37 0.93
41 3 0.08
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (40 bp):
CAAGCTACCAGTAATGCAAATAAACTGGCAGTGATGCAGA
Found at i:32557354 original size:48 final size:48
Alignment explanation
Indices: 32557302--32557495 Score: 228
Period size: 48 Copynumber: 4.0 Consensus size: 48
32557292 ATGCTAAATG
* **
32557302 TGTGCCTATGTAAGAACATGTCTGGGACATGACATCGGTGATGATATA
1 TGTGCCTATGTAAGACCATGTCTGGGACATGACATCGACGATGATATA
* * * *
32557350 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACAATGATATG
1 TGTGCCTATGTAAGACCATGTCTGGGACATGACATCGACGATGATATA
* * * * *
32557398 TTTGCC-AGTGTAAGACCATGTCTGGGACATGATATCCATGATGATATG
1 TGTGCCTA-TGTAAGACCATGTCTGGGACATGACATCGACGATGATATA
* * * *
32557446 TGTGCCAATGTAAGACCATGTCTGAGACATGGCATCAACGATGATATA
1 TGTGCCTATGTAAGACCATGTCTGGGACATGACATCGACGATGATATA
32557494 TG
1 TG
32557496 GATTCATGTA
Statistics
Matches: 123, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
48 122 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (48 bp):
TGTGCCTATGTAAGACCATGTCTGGGACATGACATCGACGATGATATA
Found at i:32557475 original size:96 final size:96
Alignment explanation
Indices: 32557310--32557492 Score: 276
Period size: 96 Copynumber: 1.9 Consensus size: 96
32557300 TGTGTGCCTA
** ** *
32557310 TGTAAGAACATGTCTGGGACATGACATCGGTGATGATATATGTGCCTGTGTAAGACCATGTCTGG
1 TGTAAGAACATGTCTGGGACATGACATCCATGATGATATATGTGCCAATGTAAGACCATGTCTGA
*
32557375 GACATGGCATCGACAATGATATGTTTGCCAG
66 GACATGGCATCAACAATGATATGTTTGCCAG
* * *
32557406 TGTAAGACCATGTCTGGGACATGATATCCATGATGATATGTGTGCCAATGTAAGACCATGTCTGA
1 TGTAAGAACATGTCTGGGACATGACATCCATGATGATATATGTGCCAATGTAAGACCATGTCTGA
*
32557471 GACATGGCATCAACGATGATAT
66 GACATGGCATCAACAATGATAT
32557493 ATGGATTCAT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 77 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (96 bp):
TGTAAGAACATGTCTGGGACATGACATCCATGATGATATATGTGCCAATGTAAGACCATGTCTGA
GACATGGCATCAACAATGATATGTTTGCCAG
Found at i:32557505 original size:48 final size:46
Alignment explanation
Indices: 32557309--32557528 Score: 183
Period size: 48 Copynumber: 4.6 Consensus size: 46
32557299 ATGTGTGCCT
* * ** *
32557309 ATGTAAGAACATGTCTGGGACATGACATCGGTGATGATATATGTGCC
1 ATGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGT-TC
* * *
32557356 TGTGTAAGACCATGTCTGGGACATGGCATCGACAATGATATGT-TTGCC
1 -ATGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTT--C
** * * * *
32557404 AGTGTAAGACCATGTCTGGGACATGATATCCATGATGATATGTGTGCC
1 A-TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGT-TC
* *
32557452 AATGTAAGACCATGTCTGAGACATGGCATCAACGATGATATATGGATTC
1 -ATGTAAGACCATGTCTGGGACATGGCATCGACGATGATATAT-G-TTC
*
32557501 ATGTAAGACCAAGT-TGGGGACATGGCAT
1 ATGTAAGACCATGTCT-GGGACATGGCAT
32557529 TGGTACTTTA
Statistics
Matches: 139, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
47 2 0.01
48 132 0.95
49 4 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (46 bp):
ATGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTTC
Found at i:32557506 original size:96 final size:94
Alignment explanation
Indices: 32557309--32557524 Score: 256
Period size: 96 Copynumber: 2.3 Consensus size: 94
32557299 ATGTGTGCCT
* ** **
32557309 ATGTAAGAACATGTCTGGGACATGACATCGGTGATGATATATGTGCCTGTGTAAGACCATGTCTG
1 ATGTAAGACCATGTCTGGGACATGACATCCATGATGATATATGTGCCAATGTAAGACCATGTCTG
* * *
32557374 GGACATGGCATCGACAATGATATGTTTGCC
66 AGACATGGCATCAACAATGATATGATT-CC
* *
32557404 AGTGTAAGACCATGTCTGGGACATGATATCCATGATGATATGTGTGCCAATGTAAGACCATGTCT
1 A-TGTAAGACCATGTCTGGGACATGACATCCATGATGATATATGTGCCAATGTAAGACCATGTCT
*
32557469 GAGACATGGCATCAACGATGATATATGGATT-C
65 GAGACATGGCATCAACAATG--ATAT-GATTCC
*
32557501 ATGTAAGACCAAGT-TGGGGACATG
1 ATGTAAGACCATGTCT-GGGACATG
32557525 GCATTGGTAC
Statistics
Matches: 104, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
95 2 0.02
96 93 0.89
97 2 0.02
98 4 0.04
99 3 0.03
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (94 bp):
ATGTAAGACCATGTCTGGGACATGACATCCATGATGATATATGTGCCAATGTAAGACCATGTCTG
AGACATGGCATCAACAATGATATGATTCC
Found at i:32559819 original size:18 final size:18
Alignment explanation
Indices: 32559796--32559841 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
32559786 TTGCTGTAAC
32559796 AGTAAACAATGCAATAAT
1 AGTAAACAATGCAATAAT
* * *
32559814 AGTAAATAGTGCAGTAAT
1 AGTAAACAATGCAATAAT
*
32559832 AGTAAGCAAT
1 AGTAAACAAT
32559842 ATGCAAGTCC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.09, G:0.17, T:0.24
Consensus pattern (18 bp):
AGTAAACAATGCAATAAT
Found at i:32560234 original size:27 final size:27
Alignment explanation
Indices: 32560218--32560397 Score: 252
Period size: 27 Copynumber: 6.7 Consensus size: 27
32560208 CTTACCATAA
*
32560218 AAGGGAAAAATAGTCATTTTACCTCAT
1 AAGGGAAAAATAGTCATTTTACCCCAT
32560245 AAGGGAAAAATAGTCATTTTACCCCAT
1 AAGGGAAAAATAGTCATTTTACCCCAT
* * * *
32560272 AAGGGCAAAACAATCATTTTACCTCAT
1 AAGGGAAAAATAGTCATTTTACCCCAT
32560299 AAGGGAAAAATAGTCATTTTACCCCAT
1 AAGGGAAAAATAGTCATTTTACCCCAT
* *
32560326 AAGGGCAGAATAGTCATTTTACCCCAT
1 AAGGGAAAAATAGTCATTTTACCCCAT
* * *
32560353 AAGGGCAAAACAGTCATTTTACCTCAT
1 AAGGGAAAAATAGTCATTTTACCCCAT
* *
32560380 AAGGGTAAAATAATCATT
1 AAGGGAAAAATAGTCATT
32560398 CCATCGATTA
Statistics
Matches: 136, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (27 bp):
AAGGGAAAAATAGTCATTTTACCCCAT
Found at i:32560338 original size:81 final size:81
Alignment explanation
Indices: 32560188--32560397 Score: 314
Period size: 81 Copynumber: 2.6 Consensus size: 81
32560178 ATATACAACA
* * * * *
32560188 CATAGGGGTAAAACAATCATCTTACCAT-AAAAGGGAAAAATAGTCATTTTACCTCATAAGGGAA
1 CATAAGGGCAAAACAATCATTTTACC-TCATAAGGGAAAAATAGTCATTTTACCCCATAAGGGAA
32560252 AAATAGTCATTTTACCC
65 AAATAGTCATTTTACCC
* *
32560269 CATAAGGGCAAAACAATCATTTTACCTCATAAGGGAAAAATAGTCATTTTACCCCATAAGGGCAG
1 CATAAGGGCAAAACAATCATTTTACCTCATAAGGGAAAAATAGTCATTTTACCCCATAAGGGAAA
32560334 AATAGTCATTTTACCC
66 AATAGTCATTTTACCC
* * *
32560350 CATAAGGGCAAAACAGTCATTTTACCTCATAAGGGTAAAATAATCATT
1 CATAAGGGCAAAACAATCATTTTACCTCATAAGGGAAAAATAGTCATT
32560398 CCATCGATTA
Statistics
Matches: 118, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 117 0.99
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (81 bp):
CATAAGGGCAAAACAATCATTTTACCTCATAAGGGAAAAATAGTCATTTTACCCCATAAGGGAAA
AATAGTCATTTTACCC
Found at i:32564256 original size:43 final size:43
Alignment explanation
Indices: 32564206--32564350 Score: 143
Period size: 43 Copynumber: 3.4 Consensus size: 43
32564196 TCCCATATAT
* * * *
32564206 GGTCTTACATGTTATC-ACATATTGATGCCATTGTCCTAGACAG
1 GGTCTTACATGTAATCGAC-TAATGATGCCAATGTCCCAGACAG
*
32564249 GGTCTTACATGTAATCGACTAATGATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAATCGACTAATGATGCCAATGTCCCAGACAG
* * * *
32564292 GGTCTTACACGTAATC-A-TAATACAATGCGAATGTCCCAGACAT
1 GGTCTTACATGTAATCGACTAAT--GATGCCAATGTCCCAGACAG
* *
32564335 AGTCTTACACGTAATC
1 GGTCTTACATGTAATC
32564351 TCATCTCAAT
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
41 4 0.04
42 1 0.01
43 83 0.92
44 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (43 bp):
GGTCTTACATGTAATCGACTAATGATGCCAATGTCCCAGACAG
Found at i:32573698 original size:12 final size:12
Alignment explanation
Indices: 32573681--32573706 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32573671 ACATTTACTG
32573681 AATTTCGCATAC
1 AATTTCGCATAC
32573693 AATTTCGCATAC
1 AATTTCGCATAC
32573705 AA
1 AA
32573707 CTATTTATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (12 bp):
AATTTCGCATAC
Found at i:32578295 original size:29 final size:30
Alignment explanation
Indices: 32578260--32578319 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
32578250 TCCTTAACTC
32578260 AAACTTTT-CAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
32578289 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
32578319 A
1 A
32578320 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 8 0.30
30 19 0.70
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:32580262 original size:13 final size:13
Alignment explanation
Indices: 32580244--32580274 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
32580234 TCCACGCGCC
32580244 CGTGTCCCAAAGT
1 CGTGTCCCAAAGT
32580257 CGTGTCCCAAAGT
1 CGTGTCCCAAAGT
32580270 CGTGT
1 CGTGT
32580275 TCCATACACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.29, G:0.26, T:0.26
Consensus pattern (13 bp):
CGTGTCCCAAAGT
Found at i:32583669 original size:17 final size:18
Alignment explanation
Indices: 32583637--32583670 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32583627 ATGGGCTGAA
*
32583637 ATGGGCTGTGTGGGCCCG
1 ATGGGCTGTATGGGCCCG
32583655 ATGGGCT-TATGGGCCC
1 ATGGGCTGTATGGGCCC
32583671 CTCATGGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.09, C:0.24, G:0.44, T:0.24
Consensus pattern (18 bp):
ATGGGCTGTATGGGCCCG
Found at i:32593994 original size:20 final size:20
Alignment explanation
Indices: 32593969--32594010 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
32593959 GAATAAGTTT
32593969 AATTTGAATTTTTTTAAATC
1 AATTTGAATTTTTTTAAATC
*
32593989 AATTTGAATTTTTTTAGATC
1 AATTTGAATTTTTTTAAATC
32594009 AA
1 AA
32594011 GAACCAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (20 bp):
AATTTGAATTTTTTTAAATC
Found at i:32594354 original size:45 final size:44
Alignment explanation
Indices: 32594305--32594437 Score: 112
Period size: 45 Copynumber: 3.0 Consensus size: 44
32594295 AGGATTTTCG
32594305 ATATGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
1 ATATGTGTT-TCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
* * * * * * * *
32594350 ATATGTGGTTACGAGTACGACCATGTTTGGGACATCGACATCG-G
1 ATATGT-GTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
* * *
32594394 AT-T-TGATTCGTGTAAGACC-CTATCTGGGACAGTGGCATCGAT
1 ATATGTGTTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT
32594436 AT
1 AT
32594438 GAGATAGCAT
Statistics
Matches: 66, Mismatches: 19, Indels: 9
0.70 0.20 0.10
Matches are distributed among these distances:
41 25 0.38
42 3 0.05
43 1 0.02
44 2 0.03
45 32 0.48
46 3 0.05
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (44 bp):
ATATGTGTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
Found at i:32596934 original size:43 final size:43
Alignment explanation
Indices: 32596773--32596937 Score: 169
Period size: 43 Copynumber: 3.9 Consensus size: 43
32596763 ATAGCTCGTA
* *
32596773 CAATGCC-ATATCCCAGATATGGTCTTACATGTCATTACAT-AT-
1 CAATGCCAATATCCCAGACATGGTCTTACATGT-AAT-CATAATG
* * ** *
32596815 CGATGCCAATATCCCAGACAGGGTCTTACACATAAACGATTAATG
1 CAATGCCAATATCCCAGACATGGTCTTACATGTAATC-A-TAATG
* *
32596860 --ATGCCAATGTCTCAGACATGGTCTTACATGTAATCATAATG
1 CAATGCCAATATCCCAGACATGGTCTTACATGTAATCATAATG
*
32596901 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 CAATGCCAATATCCCAGACATGGTCTTACATGTAATC
32596938 TCATCTCAGT
Statistics
Matches: 102, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
41 6 0.06
42 9 0.09
43 85 0.83
44 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
CAATGCCAATATCCCAGACATGGTCTTACATGTAATCATAATG
Found at i:32600197 original size:43 final size:42
Alignment explanation
Indices: 32600106--32600217 Score: 154
Period size: 43 Copynumber: 2.6 Consensus size: 42
32600096 TGAGGTTATG
*
32600106 TGTAAGACCATACCTGGGATATGGCATCGATATGAGACTTAC
1 TGTAAGACCATACCTGGGATATGGCATCGATACGAGACTTAC
* * *
32600148 TATAAGACCATAGCTGGGCTATTGGCATCGATACGAGA-TTAC
1 TGTAAGACCATACCTGGGATA-TGGCATCGATACGAGACTTAC
*
32600190 ATGTAAGACCATATCTGGGATATGGCAT
1 -TGTAAGACCATACCTGGGATATGGCAT
32600218 TGGTATAGTA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATACCTGGGATATGGCATCGATACGAGACTTAC
Found at i:32603275 original size:19 final size:19
Alignment explanation
Indices: 32603251--32603289 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
32603241 CGAATTGCAA
32603251 GGAACCCTAACCAATACTT
1 GGAACCCTAACCAATACTT
**
32603270 GGAACCCTAATTAATACTT
1 GGAACCCTAACCAATACTT
32603289 G
1 G
32603290 CTCACAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.26
Consensus pattern (19 bp):
GGAACCCTAACCAATACTT
Found at i:32613266 original size:39 final size:39
Alignment explanation
Indices: 32613222--32613389 Score: 282
Period size: 39 Copynumber: 4.3 Consensus size: 39
32613212 ATGAGATTGA
32613222 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
1 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
32613261 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
1 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
* *
32613300 AAATATATCTGGACATGATGTCCGCAGGCTATATGCTGG
1 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
* **
32613339 AAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGG
1 AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
*
32613378 AAAAATATCCGG
1 AAATATATCCGG
32613390 GTTAAAGACT
Statistics
Matches: 121, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 121 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (39 bp):
AAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
Found at i:32613404 original size:78 final size:78
Alignment explanation
Indices: 32613220--32613407 Score: 234
Period size: 78 Copynumber: 2.4 Consensus size: 78
32613210 ATATGAGATT
* * *
32613220 GAAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAATATATCCGGACATGAGGTCCG
1 GAAAA-ATATCCGGACATAAAGACCGCAGGCTATATGCTGGAAATATATCCGGACATGAGGTCCG
*
32613285 CAGGCTATATGCTG
65 CAGGCTACATGCTG
* * * * * *
32613299 GAAATATATCTGGACATGATGTCCGCAGGCTATATGCTGGAAATATATCCGGACTTGAGGTCCGC
1 GAAAAATATCCGGACATAAAGACCGCAGGCTATATGCTGGAAATATATCCGGACATGAGGTCCGC
*
32613364 AGGCTACGTGCTG
66 AGGCTACATGCTG
**
32613377 GAAAAATATCCGG-GTTAAAGACTCGCAGGCT
1 GAAAAATATCCGGACATAAAGAC-CGCAGGCT
32613408 TACGCTAGTA
Statistics
Matches: 95, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
77 4 0.04
78 87 0.92
79 4 0.04
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (78 bp):
GAAAAATATCCGGACATAAAGACCGCAGGCTATATGCTGGAAATATATCCGGACATGAGGTCCGC
AGGCTACATGCTG
Found at i:32616691 original size:38 final size:38
Alignment explanation
Indices: 32616633--32616782 Score: 176
Period size: 38 Copynumber: 3.9 Consensus size: 38
32616623 GAATCCAATC
* * * ** *
32616633 ACCAGCACTAAGCTTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTACGGGATAAAACCCGGATATAAT
*
32616671 ACCAGCACGAAGCCTACGGGATAAAACCTGGATATAAT
1 ACCAGCACGAAGCCTACGGGATAAAACCCGGATATAAT
*
32616709 ACCAGCACGAAGCCTACGGGATAAAACTCGGATATAAT
1 ACCAGCACGAAGCCTACGGGATAAAACCCGGATATAAT
* * **
32616747 ACCAGTACTAAGCC-AGCGGGATTTAACCCGGATATA
1 ACCAGCACGAAGCCTA-CGGGATAAAACCCGGATATA
32616783 TATCAAATAT
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
37 1 0.01
38 96 0.99
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.19
Consensus pattern (38 bp):
ACCAGCACGAAGCCTACGGGATAAAACCCGGATATAAT
Found at i:32616730 original size:76 final size:77
Alignment explanation
Indices: 32616615--32616787 Score: 179
Period size: 76 Copynumber: 2.2 Consensus size: 77
32616605 CTGCTAGGTT
* ** * * * **
32616615 TAAAACCTGAATCCAATCACCAGCACTAAGCTTGCGGGATTTAACCCAGATATAATACCAGCACG
1 TAAAACCTGGATATAATCACCAGCACGAAGCCTACGGGATAAAACCCAGATATAATACCAGCACG
32616680 AAGCCTA-CGGGA
66 AAGCC-AGCGGGA
* * * *
32616692 TAAAACCTGGATATAAT-ACCAGCACGAAGCCTACGGGATAAAACTCGGATATAATACCAGTACT
1 TAAAACCTGGATATAATCACCAGCACGAAGCCTACGGGATAAAACCCAGATATAATACCAGCACG
32616756 AAGCCAGCGGGA
66 AAGCCAGCGGGA
** *
32616768 TTTAACCCGGATATATATCA
1 TAAAACCTGGATATA-ATCA
32616788 AATATCATGC
Statistics
Matches: 78, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
75 1 0.01
76 60 0.77
77 16 0.21
78 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (77 bp):
TAAAACCTGGATATAATCACCAGCACGAAGCCTACGGGATAAAACCCAGATATAATACCAGCACG
AAGCCAGCGGGA
Found at i:32618484 original size:39 final size:40
Alignment explanation
Indices: 32618407--32618553 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
32618397 TAGCTCCTCG
* * *
32618407 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
32618447 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
32618486 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
32618526 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
32618554 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:32618502 original size:40 final size:39
Alignment explanation
Indices: 32618450--32618577 Score: 175
Period size: 40 Copynumber: 3.2 Consensus size: 39
32618440 TAACTCATTC
* *
32618450 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* *
32618490 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
*
32618530 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
*
32618570 AATACCTT
1 AATGCCTT
32618578 TGGATCTTAG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:32618512 original size:79 final size:80
Alignment explanation
Indices: 32618413--32618633 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
32618403 CTCGTTCAAG
* * ** * *
32618413 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
32618476 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
32618492 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
32618557 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * * ** * * *
32618572 TACCTT-TGGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
32618634 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
79 37 0.32
80 74 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:32618564 original size:80 final size:80
Alignment explanation
Indices: 32618453--32618633 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
32618443 CTCATTCAAT
* * *
32618453 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTT-GGGATCTTAACCCGGATA-
*
32618516 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
* **
32618532 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTTGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTGGGATCTTAACCCGGATA
32618596 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
32618613 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
32618634 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTGGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:32618593 original size:40 final size:40
Alignment explanation
Indices: 32618454--32618633 Score: 163
Period size: 40 Copynumber: 4.5 Consensus size: 40
32618444 TCATTCAATG
* *
32618454 CCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAATG-
1 CCTTCGGGACTTAACCCGGA-ATTAATAACTCGCAC-AAAGA
* * *
32618494 CCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAGA
*
32618534 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATA
1 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAGA
* ** * * *
32618574 CCTT-TGGATCTTAGTCCGG-ATATAGTCACTTAGCACAAAG-
1 CCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACAAAGA
*
32618614 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
32618634 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
39 11 0.09
40 94 0.81
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAGA
Found at i:32624958 original size:78 final size:78
Alignment explanation
Indices: 32624855--32625149 Score: 495
Period size: 78 Copynumber: 3.8 Consensus size: 78
32624845 CGAAGAAACA
* *
32624855 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT-GACCTTCATTGA
1 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGAT-TGGACCTTCATTGA
32624919 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
*
32624933 GATTTGGCATCTTTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGATTGGACCTTCATTGAA
*
32624998 GCAGATTCAAGAT
66 GCAGATCCAAGAT
*
32625011 GATTTGGCATCTTTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGATTGGACCTTCATTGAA
32625076 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
32625089 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACATAGCAGATCT-GACCTTCAT
1 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGAT-TGGACCTTCAT
32625150 GTGTTTACAT
Statistics
Matches: 207, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
77 1 0.00
78 205 0.99
79 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGATTGGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:32625289 original size:44 final size:45
Alignment explanation
Indices: 32625089--32625317 Score: 205
Period size: 45 Copynumber: 5.1 Consensus size: 45
32625079 GATCCAAGAT
* *
32625089 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
32625136 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* *
32625181 GATTTGGCATCTCTGTATTAGATGGGGAGCAAATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * * *
32625226 GATTTGGCATCTTTGTATTAGACGGGGAGCAGATTGAAGA-AGCT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
** * *
32625270 GATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
32625315 GAT
1 GAT
32625318 ATCGCCTTCT
Statistics
Matches: 143, Mismatches: 32, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
44 41 0.29
45 72 0.50
46 4 0.03
47 21 0.15
48 4 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:32625738 original size:35 final size:37
Alignment explanation
Indices: 32625667--32625764 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
32625657 ATAATCTTCA
32625667 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
32625705 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
32625740 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
32625765 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:32625764 original size:17 final size:19
Alignment explanation
Indices: 32625667--32625757 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
32625657 ATAATCTTCA
32625667 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32625686 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32625705 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32625722 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32625740 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
32625758 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:32625779 original size:23 final size:22
Alignment explanation
Indices: 32625667--32625781 Score: 98
Period size: 19 Copynumber: 5.9 Consensus size: 22
32625657 ATAATCTTCA
32625667 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
32625686 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
32625705 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
32625722 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
32625740 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
32625762 ATGATTTTGTAATCTTAGAA
1 ATGA-TATGCAATCTTAGAA
32625782 ATTTAATTTG
Statistics
Matches: 87, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.18
18 16 0.18
19 34 0.39
22 8 0.09
23 13 0.15
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:32627388 original size:39 final size:39
Alignment explanation
Indices: 32627231--32627373 Score: 200
Period size: 39 Copynumber: 3.7 Consensus size: 39
32627221 GGGTCCACAT
* *
32627231 GCTATGTGCTGGAATTATATCCGGAC-TAGGGTCTGCAG
1 GCTATGTGCTGGAATTATATCTGGACTTAAGGTCTGCAG
32627269 GCTATGTGCTGGAATTATATCTGGACTTAAGGTCTGCAG
1 GCTATGTGCTGGAATTATATCTGGACTTAAGGTCTGCAG
* *
32627308 GTTATGTGCTGGAATTATAACTGGACTTAAGGT-TCGCAG
1 GCTATGTGCTGGAATTATATCTGGACTTAAGGTCT-GCAG
* * *
32627347 GCTACGTGCTGGAAATATGTCTGGACT
1 GCTATGTGCTGGAATTATATCTGGACT
32627374 AAAGTCTCGT
Statistics
Matches: 94, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
38 26 0.28
39 68 0.72
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.31
Consensus pattern (39 bp):
GCTATGTGCTGGAATTATATCTGGACTTAAGGTCTGCAG
Found at i:32628552 original size:20 final size:20
Alignment explanation
Indices: 32628527--32628565 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
32628517 AATCGTAAGT
32628527 AAGAGCTCTTTAGATTTTTA
1 AAGAGCTCTTTAGATTTTTA
32628547 AAGAGCTCTTTAGATTTTT
1 AAGAGCTCTTTAGATTTTT
32628566 GTACTGGTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.46
Consensus pattern (20 bp):
AAGAGCTCTTTAGATTTTTA
Found at i:32633910 original size:53 final size:54
Alignment explanation
Indices: 32633853--32634032 Score: 197
Period size: 53 Copynumber: 3.4 Consensus size: 54
32633843 GTCTTGACAG
* * *
32633853 GGTCTTACAT-ACTATCCTTGTCTTAT-GAACTCACCAATTCCATGCCTTGGCAT
1 GGTCTTACATGA-TATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGCAT
** * *
32633906 GGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACAT
1 GGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAATGCCATGCCTTGGCAT
* * * * *
32633961 -ATCTTACATGATTTCCTTGCCATATAAAACTTATCAATGCCATGCCTTGGCAT
1 GGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGCAT
32634014 GGTCTTACATGATATCCTT
1 GGTCTTACATGATATCCTT
32634033 ATCTTACCAA
Statistics
Matches: 103, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
52 2 0.02
53 42 0.41
54 35 0.34
55 24 0.23
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.36
Consensus pattern (54 bp):
GGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGCAT
Found at i:32634068 original size:47 final size:47
Alignment explanation
Indices: 32634011--32634132 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
32634001 CATGCCTTGG
* * *
32634011 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACAAAATGCCATGTTCCAAA
* *
32634058 CATGGCCTTACATGGTATCCTTGTCTTACAAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACAAAATGCCATGTTCCAAA
32634105 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
32634133 GTGCCAATTC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACAAAATGCCATGTTCCAAA
Found at i:32634212 original size:47 final size:47
Alignment explanation
Indices: 32634147--32634268 Score: 135
Period size: 45 Copynumber: 2.6 Consensus size: 47
32634137 CAATTCCACA
* * * *
32634147 TCTTGATGTGGTCTTACATGGAGTCCTTAATCAATGCCGATGCCATG
1 TCTTGATATGGTCTTACATGGAGTCCTTAAGCAATACCAATGCCATG
**
32634194 TCTTGATATGGTCTTACATGG-GATCCTT--GCCTTACCAATGCCATG
1 TCTTGATATGGTCTTACATGGAG-TCCTTAAGCAATACCAATGCCATG
*
32634239 TCTTGACATGGTCTTACATGGTA-TCCTTAA
1 TCTTGATATGGTCTTACATGG-AGTCCTTAA
32634269 CCGTCAATTC
Statistics
Matches: 63, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
45 37 0.59
46 1 0.02
47 25 0.40
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.36
Consensus pattern (47 bp):
TCTTGATATGGTCTTACATGGAGTCCTTAAGCAATACCAATGCCATG
Found at i:32634320 original size:44 final size:44
Alignment explanation
Indices: 32634269--32634355 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
32634259 GTATCCTTAA
* *
32634269 CCGTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTT
* *
32634313 CCGTCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
32634356 GAGATATCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 2 0.05
44 36 0.95
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (44 bp):
CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTT
Found at i:32638928 original size:17 final size:18
Alignment explanation
Indices: 32638892--32638936 Score: 65
Period size: 17 Copynumber: 2.5 Consensus size: 18
32638882 TCACGTTTTG
*
32638892 TTCCTTATTTCTTTTCTTT
1 TTCCTT-TTTCTTTTATTT
32638911 TTCCTTTTT-TTTTATTT
1 TTCCTTTTTCTTTTATTT
32638928 TTCCTTTTT
1 TTCCTTTTT
32638937 GGCGTCTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.64
18 3 0.12
19 6 0.24
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (18 bp):
TTCCTTTTTCTTTTATTT
Found at i:32644186 original size:13 final size:13
Alignment explanation
Indices: 32644170--32644194 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32644160 TTAAATTAGT
32644170 TAATTAGTTTAAA
1 TAATTAGTTTAAA
32644183 TAATTAGTTTAA
1 TAATTAGTTTAA
32644195 TAAACAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:32647145 original size:48 final size:45
Alignment explanation
Indices: 32647085--32647253 Score: 176
Period size: 48 Copynumber: 3.6 Consensus size: 45
32647075 TGATATGTGT
*
32647085 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCGATATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATA---AA
* ** * * * *
32647133 GCCAGTGTAAGACATGTCTGGGACATGCACCAGCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGA-TAAA
* *
32647179 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCGCGGTAGACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCG-AG-ATA-AA
*
32647227 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
32647254 GCGTCAGCTT
Statistics
Matches: 101, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
46 34 0.34
47 3 0.03
48 63 0.62
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATAAA
Found at i:32648467 original size:43 final size:42
Alignment explanation
Indices: 32648406--32648502 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 42
32648396 CAATGAACTC
32648406 GCACACTTAGTGCTAATTAATTAACTGAAGCTATAATTGTATT
1 GCACACTTAGTGCTAATTAATTAACTGAAGCTATAATTGTA-T
**
32648449 GCACACTTAGTG-TCAATTAATTAGTTGAAGCTATAATTGTAT
1 GCACACTTAGTGCT-AATTAATTAACTGAAGCTATAATTGTAT
32648491 -CACACTTAGTGC
1 GCACACTTAGTGC
32648503 CATTACATTA
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
41 11 0.22
42 2 0.04
43 37 0.74
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (42 bp):
GCACACTTAGTGCTAATTAATTAACTGAAGCTATAATTGTAT
Found at i:32653672 original size:47 final size:47
Alignment explanation
Indices: 32653594--32654141 Score: 900
Period size: 47 Copynumber: 11.6 Consensus size: 47
32653584 CCCTTCGGGA
* * * ** * * *
32653594 CTTATCACATTTATACACTTTCATATCCATCATGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32653640 CTCTATCACTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32653688 CTTATCACATACATAAACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32653735 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32653782 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32653829 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32653876 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32653925 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32653972 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32654019 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32654066 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32654115 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
32654142 TATTCAAATA
Statistics
Matches: 472, Mismatches: 24, Indels: 11
0.93 0.05 0.02
Matches are distributed among these distances:
46 2 0.00
47 376 0.80
48 2 0.00
49 92 0.19
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32653967 original size:190 final size:190
Alignment explanation
Indices: 32653594--32654141 Score: 940
Period size: 190 Copynumber: 2.9 Consensus size: 190
32653584 CCCTTCGGGA
* * * ** * * * * *
32653594 CTTATCACATTTATACACTTTCATATCCATCATGTTGGCCACTCGG-CTCTATCACTTATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT-TATCACATATATACA
*
32653658 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATA-A-ACTTTCACATTCATCAC
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
32653721 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32653782 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
32653847 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* * *
32653912 TTGGCCATTCGGCCTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32653972 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
32654037 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
32654102 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
32654142 TATTCAAATA
Statistics
Matches: 340, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
188 95 0.28
189 3 0.01
190 242 0.71
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32657982 original size:25 final size:26
Alignment explanation
Indices: 32657930--32657985 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
32657920 GGTTAAAGGA
32657930 ATTCGACACACACAGTGCCTCTAATC
1 ATTCGACACACACAGTGCCTCTAATC
* *
32657956 ATTC-ACACACATAGTG-CTCTTATTC
1 ATTCGACACACACAGTGCCTC-TAATC
32657981 ATTCG
1 ATTCG
32657986 TTATTACACA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 3 0.12
25 19 0.73
26 4 0.15
ACGTcount: A:0.29, C:0.30, G:0.11, T:0.30
Consensus pattern (26 bp):
ATTCGACACACACAGTGCCTCTAATC
Found at i:32658273 original size:40 final size:39
Alignment explanation
Indices: 32658161--32658350 Score: 272
Period size: 40 Copynumber: 4.8 Consensus size: 39
32658151 CCAGCATGAT
* * * *
32658161 TGCTCTTCGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
32658200 TGCTCTTCGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAA
*
32658239 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGG-ACTTAGCCCGGATACATCACTAGCACGAA
32658279 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCG-GACTTAGCCCGGATACATCACTAGCACGAA
32658319 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTC-GGACTTAGCCCGGATACATCACT
32658351 CTCAATTCTC
Statistics
Matches: 136, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 43 0.32
40 91 0.67
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
TGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:32659861 original size:47 final size:47
Alignment explanation
Indices: 32659748--32660334 Score: 920
Period size: 47 Copynumber: 12.6 Consensus size: 47
32659738 GCCCTTCGGA
* * * * *
32659748 CTTATCACATTTATACACTTTCACA-TCATCACGTTGGCCACT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32659793 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32659840 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32659887 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32659934 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32659981 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32660028 CTTATACATATATATACACTTTCACATTCAT-ACATTGGCCATTCGGC
1 CTTAT-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32660075 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32660122 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32660168 CTTATCACAT-TATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32660214 CTTATCACATATATATACATCTTTCACATTCATCACATTGG-CATTCGGC
1 CTTATCAC--ATATATACA-CTTTCACATTCATCACATCGGCCATTAGGC
32660263 CTTATCACATATA-ACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32660308 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
32660335 ATTCAAATAT
Statistics
Matches: 502, Mismatches: 29, Indels: 21
0.91 0.05 0.04
Matches are distributed among these distances:
45 89 0.18
46 81 0.16
47 266 0.53
48 26 0.05
49 20 0.04
50 20 0.04
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32664547 original size:47 final size:47
Alignment explanation
Indices: 32664339--32664934 Score: 812
Period size: 48 Copynumber: 12.6 Consensus size: 47
32664329 TATTTGAATA
32664339 AATGTGAAAGTGTATATATGTGATAAGGCCTAA-GGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32664385 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
32664432 AATGT-AAAGTGTATATATATGTGATAAGGCCTAATAGCCGATTGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA-TGTGATG
* *
32664481 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
32664528 AATGTGAAAGTGTAGATATGTGATAAGGCCTAATGGCCGATGTGAATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATG
* * *
32664576 AATGTGAAAGTTTATATAT-TGATAAGGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAA-GGCCTAATGGCCGATGTGATG
* *
32664623 AATGTGAAATGTGTATATATATGTTATAA-G-CTCATGGCCGATGTGATGG
1 AATGTGAAA-GTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT-G
* * *
32664672 AATGTGAAAGTGTATATATGTGGTAAGGCCTAATAGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32664719 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAGTGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-TGTGATG
32664767 AATGTG-AAGTGTATATATGTGAT-AGGCCTAATGG-CGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
32664811 AATGTTAAAGTGTATATATGTGATAAGGCCTAAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATG
* * * * * *
32664859 AATGTGAAAGTGTATAATAAGTGATAGGGCCGAGGTGGCCAACGTGATG
1 AATGTGAAAGTGTAT-ATATGTGATAAGGCCTA-ATGGCCGATGTGATG
* *
32664908 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
32664935 TCCCGAAGGG
Statistics
Matches: 491, Mismatches: 38, Indels: 40
0.86 0.07 0.07
Matches are distributed among these distances:
44 12 0.02
45 20 0.04
46 67 0.14
47 144 0.29
48 168 0.34
49 62 0.13
50 13 0.03
51 5 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:32664677 original size:191 final size:189
Alignment explanation
Indices: 32664339--32664934 Score: 868
Period size: 191 Copynumber: 3.1 Consensus size: 189
32664329 TATTTGAATA
32664339 AATGTGAAAGTGTATATATGTGATAAGGCCTAA-GGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
32664403 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAGTGTATATATATGTGATAAGGCCTAATA
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAGTGTATATATATGTGATAAGGCCTAATG
32664468 GCCGATTGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATG
131 GCCGA-TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATG
* *
32664528 AATGTGAAAGTGTAGATATGTGATAAGGCCTAATGGCCGATGTGAATGAATGTGAAAGTTTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGAATGTGAAAGTGTATAT
*
32664593 AT-TGATAAGGGCCGAATGGCCAATGTGATGAATGTGAAATGTGTATATATATGTTATAA-G-CT
65 ATGTGATAA-GGCCGAATGGCCAATGTGATGAATGT-AAA-GTGTATATATATGTGATAAGGCCT
* *
32664655 CATGGCCGATGTGATGGAATGTGAAAGTGTATATATGTGGTAAGGCCTAATAGCTGATGTGATG
127 AATGGCCGATGTGAT-GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATG
32664719 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAGTGTGATGAATGTG-AAGTGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-TGTGATGAATGTGAAAGTGTATAT
* *
32664783 ATGTGAT-AGGCCTAATGG-CGATGTGATGAATGTTAAAGTG--TATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATG-TAAAGTGTATATATATGTGATAAGGCCT-A
* * * * * ** *
32664844 ATGGCCGATGTGATGAATGTGAAAGTGTATAATAAGTGATAGGGCCGAGGTGGCCAACGTGATG
128 ATGGCCGATGTGATGAATGTGAAAGTGTAT-ATATGTGATAAGGCCTA-ATAGCTGATGTGATG
* *
32664908 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
32664935 TCCCGAAGGG
Statistics
Matches: 370, Mismatches: 23, Indels: 28
0.88 0.05 0.07
Matches are distributed among these distances:
185 13 0.04
186 1 0.00
187 21 0.06
188 43 0.12
189 77 0.21
190 34 0.09
191 155 0.42
192 8 0.02
193 18 0.05
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (189 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATG
Found at i:32666431 original size:41 final size:40
Alignment explanation
Indices: 32666362--32666557 Score: 184
Period size: 41 Copynumber: 4.8 Consensus size: 40
32666352 GAGAATTGAG
* *
32666362 AGTGATGTAGCCGGGGCTAAGTCCCGAAGAGCATTCGTGGCT
1 AGTGATGTATCC-GGGCTAAGTCTCGAAGAGCATTCGT-GCT
32666404 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
32666444 AGTGATGTATTCCGGACTAAAGT-TCCGAAGAGCATTCGTGCT
1 AGTGATGTA-TCCGGGCT-AAGTCT-CGAAGAGCATTCGTGCT
* * * *
32666486 AGTGATATAATCCGTGCTAA-ACCCTGAA-AGGCATTCGTGCT
1 AGTGATGT-ATCCGGGCTAAGTCTC-GAAGA-GCATTCGTGCT
* * * *
32666527 GGTGTTATATCCGGGGCTAGGTC-CGAAGAGC
1 AGTGATGTATCC-GGGCTAAGTCTCGAAGAGC
32666558 CAATCATGCT
Statistics
Matches: 131, Mismatches: 13, Indels: 22
0.79 0.08 0.13
Matches are distributed among these distances:
40 23 0.18
41 61 0.47
42 46 0.35
43 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:32666482 original size:42 final size:40
Alignment explanation
Indices: 32666362--32666491 Score: 172
Period size: 42 Copynumber: 3.1 Consensus size: 40
32666352 GAGAATTGAG
* * *
32666362 AGTGATGTAGCCGGGGCTAAGTCCCGAAGAGCATTCGTGGCT
1 AGTGATGTATCC-GGACTAAGTTCCGAAGAGCATTCGT-GCT
*
32666404 AGTGATGTATCCGGGCTAAG-TCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTC-CGAAGAGCATTCGTGCT
32666444 AGTGATGTATTCCGGACTAAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTA-TCCGGACT-AAGTTCCGAAGAGCATTCGTGCT
32666486 AGTGAT
1 AGTGAT
32666492 ATAATCCGTG
Statistics
Matches: 81, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
40 13 0.16
41 29 0.36
42 37 0.46
43 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:32666506 original size:42 final size:41
Alignment explanation
Indices: 32666376--32666506 Score: 162
Period size: 42 Copynumber: 3.2 Consensus size: 41
32666366 ATGTAGCCGG
*
32666376 GGCT-AAGTCCCGAAGAGCATTCGTGGCTAGTGATGT-ATCC
1 GGCTAAAGTTCCGAAGAGCATTCGT-GCTAGTGATGTAATCC
*
32666416 GGGCT-AAG-TCTCGAAGAGCATTCGTGCTAGTGATGTATTCC
1 -GGCTAAAGTTC-CGAAGAGCATTCGTGCTAGTGATGTAATCC
*
32666457 GGACTAAAGTTCCGAAGAGCATTCGTGCTAGTGATATAATCC
1 GG-CTAAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAATCC
32666499 GTGCTAAA
1 G-GCTAAA
32666507 CCCTGAAAGG
Statistics
Matches: 80, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
40 14 0.17
41 26 0.32
42 37 0.46
43 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (41 bp):
GGCTAAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAATCC
Found at i:32666770 original size:24 final size:25
Alignment explanation
Indices: 32666735--32666785 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
32666725 TGTGTAATAA
*
32666735 TGAATGAATAGA-GCACTATGTGTG
1 TGAATGAATAGAGGCACTATGTATG
* *
32666759 TGAATGATTAGAGGCACTGTGTATG
1 TGAATGAATAGAGGCACTATGTATG
32666784 TG
1 TG
32666786 TGTAATTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.29, C:0.08, G:0.31, T:0.31
Consensus pattern (25 bp):
TGAATGAATAGAGGCACTATGTATG
Found at i:32670920 original size:190 final size:188
Alignment explanation
Indices: 32670585--32671082 Score: 748
Period size: 190 Copynumber: 2.6 Consensus size: 188
32670575 ATATTTGAAT
32670585 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTTATAT
1 AATGTGAAA-TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATAT
32670649 ATATGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAAGTGTATATA-TGATAAGGCTAA
65 AT-TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTG-AAAGTGTATATAGTGATAAGGCTAA
32670713 ATAGCCGAATGTGATGAATGTG-AAGTGTATATAT-GTGATAAGGCCTAATGGCCGATGTGATG
127 ATAGCCGAATGTGATGAATGTGAAAGTGTATATATGGTGATAAGGCCTAA-GGCCGA-GTGATG
* * *
32670775 AATGTTGAAATTTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATG-TGAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-TATA
32670840 TATTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-A
64 TATTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAAGG-CTAA
32670904 ATAGCCG-ATGTGATGAATGTGAAAAGTGTATATATGGTGATAAGGCCTAAGGCCGAGTGATG
127 ATAGCCGAATGTGATGAATGTG-AAAGTGTATATATGGTGATAAGGCCTAAGGCCGAGTGATG
* *
32670966 AATGTGAAGTGTATATATGGGTG-TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-TTATG
1 AATGTGAAATGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATA
32671029 TA-TGTG-TAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGTATATAAGTGATA
64 TATTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT-AGTGATA
32671083 GAGCCGAGTG
Statistics
Matches: 288, Mismatches: 8, Indels: 28
0.89 0.02 0.09
Matches are distributed among these distances:
186 13 0.05
187 34 0.12
188 4 0.01
189 17 0.06
190 102 0.35
191 74 0.26
192 30 0.10
193 14 0.05
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (188 bp):
AATGTGAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATA
TTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGTGATAAGGCTAAATAG
CCGAATGTGATGAATGTGAAAGTGTATATATGGTGATAAGGCCTAAGGCCGAGTGATG
Found at i:32671041 original size:237 final size:236
Alignment explanation
Indices: 32670585--32671131 Score: 762
Period size: 237 Copynumber: 2.3 Consensus size: 236
32670575 ATATTTGAAT
32670585 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTTAT
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG---T
*
32670647 ATATATGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAAGTGTATATATGATAAGGCTA
63 ATATATGTG-ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAAGTGTATATATGATAAGGCTA
32670712 AATAGCCGAATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
127 AATAGCCGAATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32670777 TGTTGAAATTTATATATGTGATAAGGCCGAATGGCCAATGTGATG
192 TGTTGAAATTTATATATGTGATAAGGCCGAATGGCCAATGTGATG
32670822 AATGTGAAAGTGTATATATATTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 AATGTGAAAGTGTATATATA-TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
32670887 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAAGTGTATATATGGTGATAAGGCCT
65 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAAGTGTATATA---TGATAAGG-CT
*
32670952 -AA-GGCCG-A-GTGATGAATGTGAAGTGTATATATGGGTG-TAAGGCCTAATGGCCGATGTGAT
126 AAATAGCCGAATGTGATGAATGTGAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGAT
* * *
32671012 GAATG-TGAAAGTTTATGTATGTG-TAAGGCCTAATGGCCGATGTGATG
189 GAATGTTGAAA-TTTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * ** * *
32671059 AATGTGAAA-TGTATATA-A-GTGAT-AGAGCCGAGTGGCCAACATGATGGATATGAAAGTGTAT
1 AATGTGAAAGTGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
32671120 AAATGTGATAAG
65 ATATGTGATAAG
32671132 TCCCAAGGGC
Statistics
Matches: 285, Mismatches: 13, Indels: 28
0.87 0.04 0.09
Matches are distributed among these distances:
232 2 0.01
233 44 0.15
235 1 0.00
236 8 0.03
237 115 0.40
238 50 0.18
239 13 0.05
240 45 0.16
241 7 0.02
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (236 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAAGTGTATATATGATAAGGCTAAATA
GCCGAATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTT
GAAATTTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:32671104 original size:46 final size:47
Alignment explanation
Indices: 32670585--32671131 Score: 715
Period size: 47 Copynumber: 11.6 Consensus size: 47
32670575 ATATTTGAAT
32670585 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32670632 AATGTG-AAGTGTTATATATATGTGAATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG---TATATATGTG-ATAAGGCCTAATGGCCGATGTGATG
*
32670682 AATGTGAAAAGTGTATATA--TGATAAGG-CTAAATAGCCGAATGTGATG
1 AATGTG-AAAGTGTATATATGTGATAAGGCCT-AATGGCCG-ATGTGATG
32670729 AATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
32670775 AATGTTGAAA-TTTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATG-TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32670822 AATGTGAAAGTGTATATATATTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATA-TGTGATAAGGCCTAATGGCCGATGTGATG
*
32670872 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32670919 AATGTGAAAAGTGTATATATGGTGATAAGGCCTAA-GGCCGA-GTGATG
1 AATGTG-AAAGTGTATATAT-GTGATAAGGCCTAATGGCCGATGTGATG
32670966 AATGTG-AAGTGTATATATGGGTG-TAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATG
* *
32671013 AATGTGAAAGTTTATGTATGTG-TAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * **
32671059 AATGTGAAA-TGTATATAAGTGAT-AGAGCCGAGTGGCCAACATGATG
1 AATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATG
* * *
32671105 GATATGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
32671132 TCCCAAGGGC
Statistics
Matches: 449, Mismatches: 24, Indels: 53
0.85 0.05 0.10
Matches are distributed among these distances:
45 46 0.10
46 104 0.23
47 148 0.33
48 40 0.09
49 36 0.08
50 70 0.16
52 5 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:32677779 original size:40 final size:40
Alignment explanation
Indices: 32677701--32677884 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
32677691 GCTACTCGTT
*
32677701 CAAATGCCTTCGGGACATAG-CCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
32677740 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
32677780 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
32677819 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
32677860 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32677885 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 50 0.40
40 59 0.48
41 13 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:32677811 original size:79 final size:82
Alignment explanation
Indices: 32677701--32677884 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
32677691 GCTACTCGTT
* * *
32677701 CAAATGCCTTCGGGACATAG-CCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
32677763 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
32677780 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
32677843 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
32677860 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32677885 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 7 0.08
79 63 0.70
80 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:32685019 original size:79 final size:82
Alignment explanation
Indices: 32684908--32685092 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
32684898 GCTACTTGTT
* * * *
32684908 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-AGATCTTAACCC
* *
32684971 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
32684988 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGTCTTCAGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCAGATCTTAACCCG
* *
32685051 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
32685068 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32685093 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.02
79 53 0.60
80 34 0.38
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCAGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:32685092 original size:40 final size:40
Alignment explanation
Indices: 32684908--32685092 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
32684898 GCTACTTGTT
* *
32684908 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
32684948 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
32684988 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * * *
32685027 CAAATGTCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
32685068 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32685093 CATCATTCAA
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 1 0.01
39 31 0.26
40 77 0.64
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:32694517 original size:81 final size:81
Alignment explanation
Indices: 32694413--32694620 Score: 292
Period size: 81 Copynumber: 2.6 Consensus size: 81
32694403 CCTAAATTGA
* * *
32694413 TAAAATGACTATTTTGCCCTTATGGGGTAAAATGATTATTTTTCCCTTAT-TGGGTAAAATGACT
1 TAAAATGACTGTTTTGCCCTTATGGGGTAAAATGATTATTTTGCCCTTATGT-GGTAAAATGAAT
* * *
32694477 GTTTTTCTCTTATGGGG
65 GTTTTGCCCTTATGAGG
* * *
32694494 TAAAATGACTGTTTTGCCTTTATGGGGTAAAATGACTATTTTGCCCTTATGTGGTAAAGTGAATG
1 TAAAATGACTGTTTTGCCCTTATGGGGTAAAATGATTATTTTGCCCTTATGTGGTAAAATGAATG
32694559 TTTTGCCCTTATGAGG
66 TTTTGCCCTTATGAGG
* * *
32694575 TAAAATGACAGTTTTGCCCTTATGTGGTAAAATGATTGTTTTGCCC
1 TAAAATGACTGTTTTGCCCTTATGGGGTAAAATGATTATTTTGCCC
32694621 CTAACTGATA
Statistics
Matches: 112, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
81 111 0.99
82 1 0.01
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (81 bp):
TAAAATGACTGTTTTGCCCTTATGGGGTAAAATGATTATTTTGCCCTTATGTGGTAAAATGAATG
TTTTGCCCTTATGAGG
Found at i:32694657 original size:27 final size:27
Alignment explanation
Indices: 32694413--32694641 Score: 262
Period size: 27 Copynumber: 8.5 Consensus size: 27
32694403 CCTAAATTGA
* *
32694413 TAAAATGACTATTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
32694440 TAAAATGATTATTTTTCCCTTAT-TGGG
1 TAAAATGACTGTTTTGCCCTTATGT-GG
* * *
32694467 TAAAATGACTGTTTTTCTCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
32694494 TAAAATGACTGTTTTGCCTTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
32694521 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
32694548 TAAAGTGAATGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
32694575 TAAAATGACAGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * ** *
32694602 TAAAATGATTGTTTTGCCCCTAACTGA
1 TAAAATGACTGTTTTGCCCTTATGTGG
32694629 TAAAATGACTGTT
1 TAAAATGACTGTT
32694642 GTACCCCTAT
Statistics
Matches: 172, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
27 172 1.00
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:32698592 original size:43 final size:43
Alignment explanation
Indices: 32698529--32698640 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 43
32698519 TTCAACGAAC
*
32698529 TCGCACACGTAGTG-CTAATTAATTAACTGAAGCTATAATTGTA
1 TCGCACACTTAGTGTC-AATTAATTAACTGAAGCTATAATTGTA
* **
32698572 TTGCACACTTAGTGTCAATTAATTAGTTGAAGCTATAATTGTA
1 TCGCACACTTAGTGTCAATTAATTAACTGAAGCTATAATTGTA
* *
32698615 TCACACACTTAGT-TCCATTACATTAA
1 TCGCACACTTAGTGTCAATTA-ATTAA
32698641 ACCAAACTTA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 6 0.10
43 52 0.88
44 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (43 bp):
TCGCACACTTAGTGTCAATTAATTAACTGAAGCTATAATTGTA
Found at i:32702269 original size:94 final size:91
Alignment explanation
Indices: 32702104--32702369 Score: 272
Period size: 94 Copynumber: 2.8 Consensus size: 91
32702094 ATATGTGTGC
** ** *
32702104 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATATTTAAGCCAGTGTAAGA-CATGTC
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATA-GAAAGCTAGTGTAAGACCATGTC
*
32702168 TAGGACATGCAGT-GGCATTGA-GACTAGAGT
65 TAGGACATGC-GTCAGC-TTGACG--T-GAGT
* *
32702198 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGGTAGACATGCTAGTGTAAGACCA-GTC
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATAGA-AAGCTAGTGTAAGACCATGTC
* *
32702262 T-GAGACATGGCGTCAGCTTGTCGTGTGT
65 TAG-GACAT-GCGTCAGCTTGACGTGAGT
* * *
32702290 TAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGCTATATGAAAGCTAGTGTAAGACCATGT
1 TAGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGCGATA-GAAAGCTAGTGTAAGACCATGT
32702355 CTAGGACATGGCGTC
64 CTAGGACAT-GCGTC
32702370 GGCATCTTAA
Statistics
Matches: 147, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
92 26 0.18
93 32 0.22
94 81 0.55
95 8 0.05
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (91 bp):
TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATAGAAAGCTAGTGTAAGACCATGTCT
AGGACATGCGTCAGCTTGACGTGAGT
Found at i:32708116 original size:6 final size:6
Alignment explanation
Indices: 32708105--32708129 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32708095 AAGTTCATAA
32708105 TTAACT TTAACT TTAACT TTAACT T
1 TTAACT TTAACT TTAACT TTAACT T
32708130 ACCATAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAACT
Found at i:32708485 original size:13 final size:13
Alignment explanation
Indices: 32708467--32708509 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
32708457 TTGTATAATT
32708467 ATTTCATTTAAAC
1 ATTTCATTTAAAC
*
32708480 ATTTCATCTT-ACC
1 ATTTCAT-TTAAAC
*
32708493 ATTTCATTTACAC
1 ATTTCATTTAAAC
32708506 ATTT
1 ATTT
32708510 AACACATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
12 2 0.08
13 21 0.84
14 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.00, T:0.49
Consensus pattern (13 bp):
ATTTCATTTAAAC
Found at i:32711559 original size:46 final size:46
Alignment explanation
Indices: 32711384--32711559 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
32711374 TGTAACCCTC
* * * *
32711384 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
32711430 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
32711480 -C-TCA-CGAAATCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
32711523 CCATAAGTGAACTCGGACTCAAATCAACGCGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32711560 AGCCCAAATA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32716961 original size:46 final size:46
Alignment explanation
Indices: 32716886--32717060 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
32716876 TGTAACCCGC
* *
32716886 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * **
32716932 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGTATGCGTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG--GGCGT--TCGCAT
* * * * *
32716982 -C-TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
32717025 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
32717061 TTGCCCAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 4 0.04
46 59 0.56
47 26 0.25
48 6 0.06
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:32718621 original size:32 final size:32
Alignment explanation
Indices: 32718581--32718643 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
32718571 CATCTATGTT
32718581 ACTTGATTGATATGAAGATTTTGGTGACTAAA
1 ACTTGATTGATATGAAGATTTTGGTGACTAAA
32718613 ACTTGATTGATATGAAGATTTTGGTGACTAA
1 ACTTGATTGATATGAAGATTTTGGTGACTAA
32718644 CATGTTTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.38
Consensus pattern (32 bp):
ACTTGATTGATATGAAGATTTTGGTGACTAAA
Found at i:32721556 original size:43 final size:43
Alignment explanation
Indices: 32721399--32721557 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
32721389 TACGTGTTAT
* *
32721399 CGTGTAAGACCACGTCTGGGACATTGGCATCGACT-TGTGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTA
* * *
32721443 CGTGTAAGACCACGCCTGGGACGTTGACATCG-TATTTGATTC
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
* * *
32721485 CGTGTAAGGCTC-TGTTTGGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGAC-CACGTCTGGGAC-GTTGGCATCGATATTTGATTA
* * *
32721528 CATGTAAGACCACTTCTGGGGCGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
32721558 TGTACAAGAT
Statistics
Matches: 92, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 28 0.30
43 35 0.38
44 29 0.32
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:32726923 original size:48 final size:48
Alignment explanation
Indices: 32726843--32727365 Score: 544
Period size: 48 Copynumber: 10.9 Consensus size: 48
32726833 ACTAAGGTAG
*
32726843 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * * * * **
32726891 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATTTATA
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * *
32726939 TGAGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCAACCTCGATA
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * * * * * ** *
32726987 CGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTACA
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* *
32727035 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGCCATCAGCCTCGATA
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * * * * ** **
32727083 TGTGAGCCAGTGTAAGGCCATGTTTGGAACATGGCATCGGTATTTATA
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* *
32727131 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGAAA
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * * * * * ** * **
32727179 TGTGATCCAATGTAAGACCATGTTTGGAACATAGCATTGGCATTTATA
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* *
32727227 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACA
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * * **
32727275 TGTGAGCCAGTGTAAGACCATGTTTGGAACATAACATCAGCAC-CGATATA
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGC-CTCG--ATA
*
32727325 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGC
32727366 ATCTTACCCT
Statistics
Matches: 376, Mismatches: 96, Indels: 4
0.79 0.20 0.01
Matches are distributed among these distances:
48 338 0.90
49 1 0.00
50 37 0.10
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
Found at i:32727007 original size:96 final size:96
Alignment explanation
Indices: 32726843--32727365 Score: 830
Period size: 96 Copynumber: 5.4 Consensus size: 96
32726833 ACTAAGGTAG
32726843 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
**
32726908 CCATGTTTGGAACATGGCATCAACATTTATA
66 CCATGTTTGGAACATGGCATCGGCATTTATA
* * *
32726939 TGAGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCAACCTCGATACGTGAGCCAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
*
32727004 CCATGTTTGGAACATGGCATCGGCATTTACA
66 CCATGTTTGGAACATGGCATCGGCATTTATA
* *
32727035 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGCCATCAGCCTCGATATGTGAGCCAGTGTAAGG
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
*
32727100 CCATGTTTGGAACATGGCATCGGTATTTATA
66 CCATGTTTGGAACATGGCATCGGCATTTATA
* * * * *
32727131 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGAAATGTGATCCAATGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
* *
32727196 CCATGTTTGGAACATAGCATTGGCATTTATA
66 CCATGTTTGGAACATGGCATCGGCATTTATA
*
32727227 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATGTGAGCCAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
** * **
32727292 CCATGTTTGGAACATAACATCAGCACCGATATA
66 CCATGTTTGGAACATGGCATCGGCA--TTTATA
32727325 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
32727366 ATCTTACCCT
Statistics
Matches: 392, Mismatches: 33, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
96 347 0.89
98 45 0.11
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (96 bp):
TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
CCATGTTTGGAACATGGCATCGGCATTTATA
Found at i:32727842 original size:10 final size:9
Alignment explanation
Indices: 32727814--32727839 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32727804 ATTCATTTAT
32727814 TTTTAGTTA
1 TTTTAGTTA
32727823 TTTTAGTTA
1 TTTTAGTTA
32727832 TTTTAGTT
1 TTTTAGTT
32727840 TATGTCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (9 bp):
TTTTAGTTA
Found at i:32727940 original size:50 final size:53
Alignment explanation
Indices: 32727877--32727993 Score: 179
Period size: 50 Copynumber: 2.3 Consensus size: 53
32727867 TAATAAAGTT
* *
32727877 ATGCATTATGTAACTCTCATGTAAGTT-AAGTTTGCATCA-TAAATTATG-AC
1 ATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGTAC
32727927 ATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGTAC
1 ATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGTAC
*
32727980 -TGCATTAAGTAACT
1 ATGCATTATGTAACT
32727994 TATTTGTTCA
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
50 26 0.43
51 12 0.20
52 21 0.34
53 2 0.03
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.37
Consensus pattern (53 bp):
ATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGTAC
Found at i:32730481 original size:6 final size:6
Alignment explanation
Indices: 32730470--32730528 Score: 57
Period size: 6 Copynumber: 9.3 Consensus size: 6
32730460 AAAAGCATGT
* *
32730470 GAAAAA GAAAAA GAAATA GAAAAA GAAAAAA GGAATGAAA G-AAAA CAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA G-AAAAA -GAA--AAA GAAAAA GAAAAA
32730521 GAAAAA GA
1 GAAAAA GA
32730529 GAATGAAAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 3 0.07
6 28 0.64
7 8 0.18
8 2 0.05
9 3 0.07
ACGTcount: A:0.76, C:0.02, G:0.19, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:32730526 original size:27 final size:28
Alignment explanation
Indices: 32730479--32730549 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
32730469 TGAAAAAGAA
*
32730479 AAAGAAATAGAAAAAGAAAAAAG-GAATG
1 AAAGAAA-ACAAAAAGAAAAAAGAGAATG
32730507 AAAGAAAACAAAAAG-AAAAAGAGAATG
1 AAAGAAAACAAAAAGAAAAAAGAGAATG
*
32730534 AAAGAGAACAAAAAGA
1 AAAGAAAACAAAAAGA
32730550 GATTGAGAGC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 6 0.15
27 26 0.67
28 7 0.18
ACGTcount: A:0.73, C:0.03, G:0.20, T:0.04
Consensus pattern (28 bp):
AAAGAAAACAAAAAGAAAAAAGAGAATG
Found at i:32730567 original size:21 final size:21
Alignment explanation
Indices: 32730522--32730567 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
32730512 AAACAAAAAG
*
32730522 AAAAAGAGAATGAAAGAGAAC
1 AAAAAGAGAATGAAAGAGAAA
* * *
32730543 AAAAAGAGATTGAGAGCGAAA
1 AAAAAGAGAATGAAAGAGAAA
32730564 AAAA
1 AAAA
32730568 TGTGAGAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.65, C:0.04, G:0.24, T:0.07
Consensus pattern (21 bp):
AAAAAGAGAATGAAAGAGAAA
Found at i:32730888 original size:13 final size:13
Alignment explanation
Indices: 32730870--32730897 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32730860 GGTAAGCAAG
32730870 GTAAGGGTTTCAT
1 GTAAGGGTTTCAT
32730883 GTAAGGGTTTCAT
1 GTAAGGGTTTCAT
32730896 GT
1 GT
32730898 TATCTGAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.32, T:0.39
Consensus pattern (13 bp):
GTAAGGGTTTCAT
Found at i:32732327 original size:52 final size:51
Alignment explanation
Indices: 32732197--32732328 Score: 167
Period size: 50 Copynumber: 2.6 Consensus size: 51
32732187 ATGTGTTCTG
* * *
32732197 CATTTAATAAAGTCATGCATTATGTAACTCTCATATAAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATATAAGTTAAGTTTGCAT
* * * *
32732248 CA-TAAATTATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATATAAGTT-AAGTTTGCAT
* *
32732299 CATTAAATTAAGTCATGTATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
32732329 ATTTGTTCAT
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
50 31 0.46
51 14 0.21
52 23 0.34
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCCATATAAGTTAAGTTTGCAT
Found at i:32732971 original size:12 final size:12
Alignment explanation
Indices: 32732954--32732982 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
32732944 AAAGGTCACA
32732954 AATAGGCATTTG
1 AATAGGCATTTG
32732966 AATAGGCATTTG
1 AATAGGCATTTG
32732978 AATAG
1 AATAG
32732983 TCATAATAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (12 bp):
AATAGGCATTTG
Found at i:32734491 original size:21 final size:20
Alignment explanation
Indices: 32734467--32734505 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
32734457 GTTAAGAGGA
32734467 CACACGAGCATGTCGCCCTTC
1 CACACGAGCATGT-GCCCTTC
* *
32734488 CACATGAGCGTGTGCCCT
1 CACACGAGCATGTGCCCT
32734506 CAGTTGCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.18, C:0.38, G:0.23, T:0.21
Consensus pattern (20 bp):
CACACGAGCATGTGCCCTTC
Found at i:32736637 original size:50 final size:50
Alignment explanation
Indices: 32736569--32736862 Score: 297
Period size: 50 Copynumber: 5.8 Consensus size: 50
32736559 ACCGAAGCTC
* * * * * *
32736569 TCTGGTACGCATAATAGCCTGCACTTAGTTCTACACATGCGACCCAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
32736619 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * *
32736669 T-TGGATACACGTAGTAGCCTGCACTTACTACTACACACGTGATCAAAGCTA
1 TCTGG-TACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * * * *
32736720 TCGGGTACGCATAGTAGCCTACACTTAGTA-TAACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACT-ACACATGTGACCTAACAA
* *
32736770 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGTGACCTGA-AA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
** * *
32736819 TCGTCTTAAACACATAGTAGCCTGCACATAGTACTACACATGTG
1 TC-TGGT--ACACGTAGTAGCCTGCACTTAGTACTACACATGTG
32736863 TTCTCACAAC
Statistics
Matches: 204, Mismatches: 32, Indels: 14
0.82 0.13 0.06
Matches are distributed among these distances:
49 7 0.03
50 127 0.62
51 36 0.18
52 34 0.17
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:32736764 original size:101 final size:101
Alignment explanation
Indices: 32736630--32736811 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 101
32736620 CTGGTACACG
* * * *
32736630 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-TGGATACACGTAGTAGCCTGCACT
1 TAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTGG-TACACGTAGTAGCCTACACT
32736694 TACTACTACACACGTGATCAAAGCTATCGGGTACGCA
65 TACTACTACACACGTGATCAAAGCTATCGGGTACGCA
*
32736731 TAGTAGCCTACACTTAGTA-TAACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTACACT
1 TAGTAGCCTACACTTAGTACT-ACACACGCGACCTAACAATCTGGTACACGTAGTAGCCTACACT
* *
32736795 TAGTACTACACATGTGA
65 TACTACTACACACGTGA
32736812 CCTGAAATCG
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
100 1 0.01
101 68 0.94
102 3 0.04
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTGGTACACGTAGTAGCCTACACTT
ACTACTACACACGTGATCAAAGCTATCGGGTACGCA
Found at i:32743723 original size:50 final size:50
Alignment explanation
Indices: 32743631--32743916 Score: 240
Period size: 50 Copynumber: 5.7 Consensus size: 50
32743621 CAAAGCTCTT
* * * **
32743631 TGGTACACATA-TAGCCTGCACTTAGTATTAAACAAGCAACCTAACAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATC
* * * *
32743680 TTGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATC
** * * * * * *
32743730 -GGATACATGTAGTAGCCTACGCTTACTACTACACACGTGATCGAAGCTATC
1 TGG-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAATC
** * *
32743781 -GGATATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATC
1 TGG-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATC
*
32743831 TGGTACACGA-ATTAGCCTGCACTTAGTACTACACACGTGACCTAA-AATC
1 TGGTACAC-ATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATC
** * *
32743880 GTCTTAAACACATAGTAGCCTACACATAGTACTACAC
1 -TGGT--ACACATAGTAGCCTGCACTTAGTACTACAC
32743917 GTGTTCTCAC
Statistics
Matches: 189, Mismatches: 39, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
49 14 0.07
50 108 0.57
51 42 0.22
52 25 0.13
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (50 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATC
Found at i:32743864 original size:101 final size:101
Alignment explanation
Indices: 32743689--32743870 Score: 276
Period size: 101 Copynumber: 1.8 Consensus size: 101
32743679 CTTGTACACG
* * * * *
32743689 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCGGATACATGTAGTAGCCTACGCTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCGGATACACGAAGTAGCCTACACTT
32743754 ACTACTACACACGTGATCGAAGCTATCGGATATGCA
66 ACTACTACACACGTGATCGAAGCTATCGGATATGCA
* *
32743790 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGG-TACACGAATTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATC-GGATACACGAAGTAGCCTACACT
*
32743854 TAGTACTACACACGTGA
65 TACTACTACACACGTGA
32743871 CCTAAAATCG
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 70 0.97
102 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCGGATACACGAAGTAGCCTACACTT
ACTACTACACACGTGATCGAAGCTATCGGATATGCA
Found at i:32743917 original size:151 final size:149
Alignment explanation
Indices: 32743638--32743919 Score: 361
Period size: 151 Copynumber: 1.9 Consensus size: 149
32743628 CTTTGGTACA
* * *
32743638 CATATAGCCTGCACTTAGTATTAAACAAGCAACCTAACAATCTTGTACACGTAGTAGCCTGCACT
1 CATATAGCCTGCACTTAGTACTAAACAAGCAACCTAACAATCTGGTACACGAAGTAGCCTGCACT
* * * ** * *
32743703 TAGTACTACACATGTGACCTAACCATCGGATACATGTAGTAGCCTACGCTTACTACTACACACGT
66 TAGTACTACACACGTGACCTAACAATCGGAAACACATAGTAGCCTACACATACTACTA-ACACGT
32743768 GATCGAAGCTATCGGATATG
130 GATCGAAGCTATCGGATATG
* * * *
32743788 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGAATTAGCCTGCAC
1 CATA-TAGCCTGCACTTAGTACTAAACAAGCAACCTAACAATCTGGTACACGAAGTAGCCTGCAC
* *
32743853 TTAGTACTACACACGTGACCTAA-AATCGTCTTAAACACATAGTAGCCTACACATAGTACT-ACA
65 TTAGTACTACACACGTGACCTAACAATCG---GAAACACATAGTAGCCTACACATACTACTAACA
32743916 CGTG
127 CGTG
32743920 TTCTCACAAC
Statistics
Matches: 112, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
150 8 0.07
151 82 0.73
153 22 0.20
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (149 bp):
CATATAGCCTGCACTTAGTACTAAACAAGCAACCTAACAATCTGGTACACGAAGTAGCCTGCACT
TAGTACTACACACGTGACCTAACAATCGGAAACACATAGTAGCCTACACATACTACTAACACGTG
ATCGAAGCTATCGGATATG
Found at i:32755913 original size:24 final size:24
Alignment explanation
Indices: 32755868--32755913 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
32755858 TACTAATAGT
* * *
32755868 TTAAATATTGAATTATATTTTATA
1 TTAAATATTAAATTAAAATTTATA
32755892 TTAAATATTAAATTAAAATTTA
1 TTAAATATTAAATTAAAATTTA
32755914 ATTGTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
TTAAATATTAAATTAAAATTTATA
Found at i:32759218 original size:45 final size:41
Alignment explanation
Indices: 32759147--32759265 Score: 105
Period size: 41 Copynumber: 2.8 Consensus size: 41
32759137 GTGTTCTCAT
* * * *
32759147 GTAAGACCACGTTTGGGACGTTGGCATTGATATATGTGGTTACGA
1 GTAAGACCATGTCTGGGAC-ATGGCATTGATAT-T-TGATT-CGA
* *
32759192 GTAAGACCATGTCTGGGACATCGGCATCG-TATTTGATTCGT
1 GTAAGACCATGTCTGGGACAT-GGCATTGATATTTGATTCGA
* *
32759233 GTAAGACCCTATCTGGGACAGTGGCATTGATAT
1 GTAAGACCATGTCTGGGACA-TGGCATTGATAT
32759266 GAGATAGCAT
Statistics
Matches: 62, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
41 26 0.42
42 8 0.13
43 1 0.02
44 4 0.06
45 23 0.37
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (41 bp):
GTAAGACCATGTCTGGGACATGGCATTGATATTTGATTCGA
Found at i:32760749 original size:33 final size:34
Alignment explanation
Indices: 32760707--32760770 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 34
32760697 GCATGTTGTA
* *
32760707 ACAGTCTGGGCTTGAGCCCTATTCAG-AATCAGT
1 ACAGTCTGGGCCTGAGCCCTATACAGTAATCAGT
32760740 ACAGTCTGGGCCTGAGCCCTATACAGTAATC
1 ACAGTCTGGGCCTGAGCCCTATACAGTAATC
32760771 GTGTGGCCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 24 0.86
34 4 0.14
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (34 bp):
ACAGTCTGGGCCTGAGCCCTATACAGTAATCAGT
Found at i:32760766 original size:27 final size:29
Alignment explanation
Indices: 32760736--32760799 Score: 73
Period size: 27 Copynumber: 2.3 Consensus size: 29
32760726 TATTCAGAAT
* *
32760736 CAGTACAGTC-TG-GGCCTGAGCCCTATA
1 CAGTACAGTCGTGTGGCCTAAGCCCAATA
32760763 CAGTA-A-TCGTGTGGCCTAAGCCCAATA
1 CAGTACAGTCGTGTGGCCTAAGCCCAATA
32760790 CAGTATCAGT
1 CAGTA-CAGT
32760800 ACAGTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
25 2 0.07
26 3 0.10
27 23 0.77
29 1 0.03
30 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (29 bp):
CAGTACAGTCGTGTGGCCTAAGCCCAATA
Found at i:32761026 original size:27 final size:26
Alignment explanation
Indices: 32760962--32761036 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
32760952 AGAAATTGTA
* * *
32760962 AATGTGGCAAAGCCACCACTATCAGT
1 AATGTGGCATAGCCACCAGTAACAGT
32760988 AATTGTGGCATAGCCACCAGTAACAGT
1 AA-TGTGGCATAGCCACCAGTAACAGT
* *
32761015 GAATGTGACATAGTCACCAGTA
1 -AATGTGGCATAGCCACCAGTA
32761037 CTTCCTCCAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 2 0.05
27 38 0.90
28 2 0.05
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (26 bp):
AATGTGGCATAGCCACCAGTAACAGT
Found at i:32761203 original size:27 final size:27
Alignment explanation
Indices: 32761173--32761335 Score: 152
Period size: 27 Copynumber: 6.1 Consensus size: 27
32761163 GGCATAATCA
* *
32761173 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCCTACAAGGGCATTACGG
* * * *
32761200 TCATTTTACCTTACAGGGGTATTA-TG
1 TCATTTTACCCTACAAGGGCATTACGG
* *** * *
32761226 -AATTTTACCCTTTTAGGGTATTACAG
1 TCATTTTACCCTACAAGGGCATTACGG
*
32761252 TCATTTTACCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAAGGGCATTACGG
* * *
32761279 TCATTTAACCCTACAGGGGCATTACGC
1 TCATTTTACCCTACAAGGGCATTACGG
32761306 TCATTTTACCCTA-AAGGGGCATTACGG
1 TCATTTTACCCTACAA-GGGCATTACGG
32761333 TCA
1 TCA
32761336 AATAACGACC
Statistics
Matches: 111, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
25 17 0.15
26 3 0.03
27 91 0.82
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
TCATTTTACCCTACAAGGGCATTACGG
Found at i:32771759 original size:43 final size:43
Alignment explanation
Indices: 32771711--32771818 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 43
32771701 GATTAACGAG
* *
32771711 ATGTGATTATGTGTAAGACTATGTT-TGGGACATTGGCATCATT
1 ATGTGATTATGTGTAAGACCAT-TTCTAGGACATTGGCATCATT
*
32771754 ATGTGATTATGTGTAAGACCATTTCTAGGACATTGGCATCGTT
1 ATGTGATTATGTGTAAGACCATTTCTAGGACATTGGCATCATT
*
32771797 AAT-TAATT-TCGTGTAAGACCAT
1 -ATGTGATTAT-GTGTAAGACCAT
32771819 AACTGGGCTA
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 53 0.91
44 2 0.03
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (43 bp):
ATGTGATTATGTGTAAGACCATTTCTAGGACATTGGCATCATT
Found at i:32774538 original size:43 final size:43
Alignment explanation
Indices: 32774450--32774589 Score: 135
Period size: 43 Copynumber: 3.3 Consensus size: 43
32774440 TGTGATTATG
* * *
32774450 TGTAAGACCATGTCTGGGACATTGGCTTCATTATGTGATTACA
1 TGTAAGACCATATCTGGGACATTGGCATCATTATGTAATTACA
* *
32774493 TGTAAGACCATATTTGGGACATTGGCAT-AGTTAAT-TAATTTCA
1 TGTAAGACCATATCTGGGACATTGGCATCA-TT-ATGTAATTACA
* * * *
32774536 TGTGAGACCATAGCTGGG-CTATTGGCATCGA-TATGTGATAACA
1 TGTAAGACCATATCTGGGAC-ATTGGCATC-ATTATGTAATTACA
32774579 TGTAAGACCAT
1 TGTAAGACCAT
32774590 GTCTTGGATA
Statistics
Matches: 79, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
42 4 0.05
43 72 0.91
44 2 0.03
45 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGACATTGGCATCATTATGTAATTACA
Found at i:32776184 original size:34 final size:32
Alignment explanation
Indices: 32776141--32776231 Score: 101
Period size: 34 Copynumber: 2.8 Consensus size: 32
32776131 TTAGGGCCTT
*
32776141 AGCCCATTTCAGTAACAGTAGCAGTCCGGGACTG
1 AGCCCATTTCAGTAACAGTA-CAGT-CGGGACTA
* * *
32776175 AGCCCATTTCAATAACAGTATCAGTGGGGCCTA
1 AGCCCATTTCAGTAACAGTA-CAGTCGGGACTA
* *
32776208 AGCCCATTACAGTATCAGTACAGT
1 AGCCCATTTCAGTAACAGTACAGT
32776232 TGCAATTAGA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
32 4 0.08
33 22 0.45
34 23 0.47
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (32 bp):
AGCCCATTTCAGTAACAGTACAGTCGGGACTA
Found at i:32783786 original size:43 final size:43
Alignment explanation
Indices: 32783739--32783846 Score: 155
Period size: 43 Copynumber: 2.5 Consensus size: 43
32783729 TAGCCCAACT
* *
32783739 ATGGTCTTACACAAAATTA-ATTAACGATGCCAATGTCCCATAC
1 ATGGTCTTACACAAAATCACA-TAACGATGCCAATGTCCCAGAC
* *
32783782 ATGGTCTTACACATAATCACATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACAAAATCACATAACGATGCCAATGTCCCAGAC
*
32783825 ATGGTCTTACACATAATCACAT
1 ATGGTCTTACACAAAATCACAT
32783847 CTCGTTAATC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
43 59 0.98
44 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACAAAATCACATAACGATGCCAATGTCCCAGAC
Found at i:32783833 original size:86 final size:85
Alignment explanation
Indices: 32783680--32783837 Score: 196
Period size: 86 Copynumber: 1.8 Consensus size: 85
32783670 AGCTTGTATA
** * *
32783680 ATGCCATATCCCATACATGGTCTTACATGTTATCACATATCGATAACGATAGCCCAACTATGGTC
1 ATGCCATATCCCATACATGGTCTTACACATAATCACATATCGATAACAATAGCCCAACTATGGTC
32783745 TTACACAAAATTAATTAACG
66 TTACACAAAATTAATTAACG
* **
32783765 ATGCCAATGTCCCATACATGGTCTTACACATAATCACATAAT-GATGCCAAT-GTCCCAGAC-AT
1 ATGCC-ATATCCCATACATGGTCTTACACATAATCACAT-ATCGATAACAATAG-CCCA-ACTAT
32783827 GGTCTTACACA
62 GGTCTTACACA
32783838 TAATCACATC
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 6 0.10
86 52 0.84
87 4 0.06
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (85 bp):
ATGCCATATCCCATACATGGTCTTACACATAATCACATATCGATAACAATAGCCCAACTATGGTC
TTACACAAAATTAATTAACG
Found at i:32785588 original size:53 final size:53
Alignment explanation
Indices: 32785415--32785606 Score: 222
Period size: 53 Copynumber: 3.6 Consensus size: 53
32785405 GACCAAACCA
* * * * * * *
32785415 TGTAAGACCGGAACTTGTGGGTTATGACATCATATGGAAGGAAGCCCATATCA
1 TGTAAGAACGTAACTGGTGGGTTATGACATCATATGGAAAGAAGACCATGTCG
* * *
32785468 TGTAAGACCGTAATTGGTGGGTTATTACATCATATGGAAAGAAGACCATGTCG
1 TGTAAGAACGTAACTGGTGGGTTATGACATCATATGGAAAGAAGACCATGTCG
* * *
32785521 TGTAAGAACATAACTGGTGGGTTATGGCATCATATGAAAAGAAGACCATGTCG
1 TGTAAGAACGTAACTGGTGGGTTATGACATCATATGGAAAGAAGACCATGTCG
** * * *
32785574 TGTAAGATTGTAACTAGTGGATTATGGCATCAT
1 TGTAAGAACGTAACTGGTGGGTTATGACATCAT
32785607 GTGGGAAAAA
Statistics
Matches: 120, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 120 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (53 bp):
TGTAAGAACGTAACTGGTGGGTTATGACATCATATGGAAAGAAGACCATGTCG
Found at i:32785796 original size:29 final size:28
Alignment explanation
Indices: 32785764--32785917 Score: 104
Period size: 28 Copynumber: 5.5 Consensus size: 28
32785754 TTTAATGACA
32785764 CCTTTGTGGCAAAACTTTGGAAAGGTAAG
1 CCTTTGTGGCAAAACTTT-GAAAGGTAAG
* *
32785793 CCTTTGTGG-AAAAGCTATGAAAGGCCAA-
1 CCTTTGTGGCAAAA-CTTTGAAAGG-TAAG
* * *
32785821 ACTTTGTGCCAAAACTCTAGAAAGGTAAG
1 CCTTTGTGGCAAAACT-TTGAAAGGTAAG
*
32785850 CCTTTGTGGC-AAACTTTTTAAA-G-AACG
1 CCTTTGTGGCAAAAC-TTTGAAAGGTAA-G
* * * *
32785877 CCTTTATGG-AAAATCTCTAAAAGGAAAG
1 CCTTTGTGGCAAAA-CTTTGAAAGGTAAG
*
32785905 CCTCTGTGGCAAA
1 CCTTTGTGGCAAA
32785918 CTCTAGGCAG
Statistics
Matches: 97, Mismatches: 16, Indels: 24
0.71 0.12 0.18
Matches are distributed among these distances:
26 2 0.02
27 18 0.19
28 39 0.40
29 38 0.39
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (28 bp):
CCTTTGTGGCAAAACTTTGAAAGGTAAG
Found at i:32785815 original size:28 final size:28
Alignment explanation
Indices: 32785764--32785864 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
32785754 TTTAATGACA
* *
32785764 CCTTTGTGGCAAAACTTTGGAAAGGTAAG
1 CCTTTGTGG-AAAACTATAGAAAGGTAAG
*
32785793 CCTTTGTGGAAAAGCTAT-GAAAGGCCAA-
1 CCTTTGTGGAAAA-CTATAGAAAGG-TAAG
* * *
32785821 ACTTTGTGCCAAAACTCTAGAAAGGTAAG
1 CCTTTGTG-GAAAACTATAGAAAGGTAAG
*
32785850 CCTTTGTGGCAAACT
1 CCTTTGTGGAAAACT
32785865 TTTTAAAGAA
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
28 27 0.47
29 31 0.53
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26
Consensus pattern (28 bp):
CCTTTGTGGAAAACTATAGAAAGGTAAG
Found at i:32785872 original size:28 final size:27
Alignment explanation
Indices: 32785733--32785919 Score: 78
Period size: 28 Copynumber: 6.7 Consensus size: 27
32785723 AGTAAAAGAA
* ** *
32785733 AAGCCTTTGTGGCAATCTTTGTTTAATG
1 AAGCCTTTGTGGCAAACTTT-TGAAAGG
*
32785761 ACA-CCTTTGTGGCAAAACTTTGGAAAGG
1 A-AGCCTTTGTGGC-AAACTTTTGAAAGG
* *
32785789 TAAGCCTTTGTGGAAAAGC-TATGAAAGG
1 -AAGCCTTTGTGGCAAA-CTTTTGAAAGG
* * * *
32785817 CCAA-ACTTTGTGCCAAAACTCTAGAAAGG
1 --AAGCCTTTGTGGC-AAACTTTTGAAAGG
*
32785846 TAAGCCTTTGTGGCAAACTTTTTAAA-G
1 -AAGCCTTTGTGGCAAACTTTTGAAAGG
* * * *
32785873 AACGCCTTTATGG-AAAATCTCTAAAAGG
1 AA-GCCTTTGTGGCAAACT-TTTGAAAGG
*
32785901 AAAGCCTCTGTGGCAAACT
1 -AAGCCTTTGTGGCAAACT
32785920 CTAGGCAGGA
Statistics
Matches: 117, Mismatches: 28, Indels: 27
0.68 0.16 0.16
Matches are distributed among these distances:
26 6 0.05
27 15 0.13
28 53 0.45
29 43 0.37
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (27 bp):
AAGCCTTTGTGGCAAACTTTTGAAAGG
Found at i:32785921 original size:27 final size:27
Alignment explanation
Indices: 32785764--32785941 Score: 92
Period size: 28 Copynumber: 6.3 Consensus size: 27
32785754 TTTAATGACA
* * *
32785764 CCTTTGTGGCAAAACTTTGGAAAGGTAAG
1 CCTTTGTGGC-AAACTCT-AAAAGGAAAG
* * *
32785793 CCTTTGTGGAAAAGCTATGAAAGGCCAAA-
1 CCTTTGTGGCAAA-CTCTAAAAGG--AAAG
* *
32785822 -CTTTGTGCCAAAACTCTAGAAAGGTAAG
1 CCTTTGTGGC-AAACTCTA-AAAGGAAAG
* * *
32785850 CCTTTGTGGCAAACTTTTTAAA-GAACG
1 CCTTTGTGGCAAAC-TCTAAAAGGAAAG
* *
32785877 CCTTTATGGAAAATCTCTAAAAGGAAAG
1 CCTTTGTGGCAAA-CTCTAAAAGGAAAG
* ** *
32785905 CCTCTGTGGCAAACTCTAGGCAGGAAAA
1 CCTTTGTGGCAAACTCTA-AAAGGAAAG
32785933 CCTTTGTGG
1 CCTTTGTGG
32785942 TAATATCCAT
Statistics
Matches: 113, Mismatches: 25, Indels: 23
0.70 0.16 0.14
Matches are distributed among these distances:
27 26 0.23
28 55 0.49
29 30 0.27
30 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (27 bp):
CCTTTGTGGCAAACTCTAAAAGGAAAG
Found at i:32786218 original size:23 final size:23
Alignment explanation
Indices: 32786191--32786264 Score: 66
Period size: 23 Copynumber: 3.3 Consensus size: 23
32786181 GACTCTAAAG
32786191 GTATGGTAAGTGTAAGAAATAAT
1 GTATGGTAAGTGTAAGAAATAAT
*
32786214 GTATGGGTCAA-T-T-AGAAAGAA-
1 GTAT-GGT-AAGTGTAAGAAATAAT
* *
32786235 CTATGTATAAGTGTAAGAAATAAT
1 GTATG-GTAAGTGTAAGAAATAAT
32786259 GTATGG
1 GTATGG
32786265 GTCAATTAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
20 3 0.08
21 5 0.13
22 8 0.21
23 12 0.32
24 8 0.21
25 2 0.05
ACGTcount: A:0.42, C:0.03, G:0.26, T:0.30
Consensus pattern (23 bp):
GTATGGTAAGTGTAAGAAATAAT
Found at i:32786242 original size:25 final size:25
Alignment explanation
Indices: 32786212--32786287 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
32786202 GTAAGAAATA
32786212 ATGTATGGGTCAATTAGAAAGAACT
1 ATGTATGGGTCAATTAGAAAGAACT
* * *
32786237 ATGTA----T-AAGT-GTAAGAAAT
1 ATGTATGGGTCAATTAGAAAGAACT
32786256 AATGTATGGGTCAATTAGAAAGAACT
1 -ATGTATGGGTCAATTAGAAAGAACT
*
32786282 AAGTAT
1 ATGTAT
32786288 CCAACAAACT
Statistics
Matches: 37, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
19 7 0.19
20 8 0.22
21 1 0.03
24 1 0.03
25 13 0.35
26 7 0.19
ACGTcount: A:0.43, C:0.05, G:0.22, T:0.29
Consensus pattern (25 bp):
ATGTATGGGTCAATTAGAAAGAACT
Found at i:32786261 original size:45 final size:45
Alignment explanation
Indices: 32786197--32786287 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
32786187 AAAGGTATGG
*
32786197 TAAGTGTAAGAAATAATGTATGGGTCAATTAGAAAGAACTATGTA
1 TAAGTGTAAGAAATAATGTATGGGTCAATTAGAAAGAACTAAGTA
32786242 TAAGTGTAAGAAATAATGTATGGGTCAATTAGAAAGAACTAAGTA
1 TAAGTGTAAGAAATAATGTATGGGTCAATTAGAAAGAACTAAGTA
32786287 T
1 T
32786288 CCAACAAACT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.45, C:0.04, G:0.22, T:0.29
Consensus pattern (45 bp):
TAAGTGTAAGAAATAATGTATGGGTCAATTAGAAAGAACTAAGTA
Found at i:32788922 original size:40 final size:40
Alignment explanation
Indices: 32788863--32789064 Score: 275
Period size: 40 Copynumber: 5.0 Consensus size: 40
32788853 CGGATGATAA
* *
32788863 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
32788902 CCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
32788943 CCGGTCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * **
32788983 TCGGGCTAAGTCCCGAAGGCATTTGTACGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
32789023 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
32789063 CC
1 CC
32789065 AGTTAAATCC
Statistics
Matches: 145, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 2 0.01
40 141 0.97
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32792526 original size:51 final size:51
Alignment explanation
Indices: 32792443--32792569 Score: 211
Period size: 51 Copynumber: 2.5 Consensus size: 51
32792433 AAATGATGAT
* *
32792443 GAAAAAAAAAGAAAGAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAA
1 GAAAGAAAAAGAAAGGAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAA
*
32792494 GAAAGAAAAAGAAAGGAAAAAAGCTCTGATGTTGTTCTTGGCCGAATAGAA
1 GAAAGAAAAAGAAAGGAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAA
32792545 GAAAGAAAAAG-AAGGAAAAAGAGCT
1 GAAAGAAAAAGAAAGGAAAAA-AGCT
32792570 TTGAGGAAAT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
50 9 0.12
51 63 0.88
ACGTcount: A:0.50, C:0.09, G:0.24, T:0.17
Consensus pattern (51 bp):
GAAAGAAAAAGAAAGGAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAA
Found at i:32793937 original size:39 final size:40
Alignment explanation
Indices: 32793687--32793929 Score: 349
Period size: 39 Copynumber: 6.2 Consensus size: 40
32793677 GGATTGATAA
* *
32793687 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
32793727 CC-GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
32793765 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-TAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
32793804 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
32793843 CCGGGCTAAGTCCCGAAGGCA-TTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
32793882 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
32793922 CC-GGCTAA
1 CCGGGCTAA
32793930 ACTCCGAAAG
Statistics
Matches: 188, Mismatches: 8, Indels: 15
0.89 0.04 0.07
Matches are distributed among these distances:
38 51 0.27
39 88 0.47
40 49 0.26
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32799489 original size:40 final size:40
Alignment explanation
Indices: 32799440--32799656 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
32799430 GGATGATAAT
* *
32799440 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATCC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT-C
* *
32799480 CAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
32799520 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* **
32799560 CGGGCTAAGTCCCAAAGGCATTTGTGCGAACTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
32799600 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* *
32799640 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
32799657 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 16 0.10
40 142 0.89
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:32806982 original size:40 final size:40
Alignment explanation
Indices: 32806888--32807032 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
32806878 TACTCGAATG
* *
32806888 ATATCCGGGCTAAGTGCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
32806929 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
32806969 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
32807009 ATATCCGGGTTAAGACCTGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
32807033 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:32808660 original size:26 final size:25
Alignment explanation
Indices: 32808608--32808660 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
32808598 TTAGATTTCA
*
32808608 CCTTAAAGGCTTTTCTTCATACCATG
1 CCTTAAAGGCTTTTCGTCATA-CATG
32808634 CCTTAAAGGCATTTCTCGTCATA-ATG
1 CCTTAAAGGC-TTT-TCGTCATACATG
32808660 C
1 C
32808661 ACCACAAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 14 0.58
27 3 0.12
28 7 0.29
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (25 bp):
CCTTAAAGGCTTTTCGTCATACATG
Found at i:32808990 original size:29 final size:28
Alignment explanation
Indices: 32808918--32809041 Score: 128
Period size: 27 Copynumber: 4.5 Consensus size: 28
32808908 ATTTCCATAG
* *
32808918 AGGCTTCCA-TGTCATAG-TTCTCCACAA
1 AGGCTTCCATTTTCATAGATT-GCCACAA
*
32808945 AGGCTACCATTTTCATAGATTGCCACAA
1 AGGCTTCCATTTTCATAGATTGCCACAA
*
32808973 AAGCTTCCATTTCTCATAGATTGCCACAA
1 AGGCTTCCATTT-TCATAGATTGCCACAA
* * ** *
32809002 AGGCTTCCATGTT-ATAGACTATCATAA
1 AGGCTTCCATTTTCATAGATTGCCACAA
32809029 AGGCTTCCATTTT
1 AGGCTTCCATTTT
32809042 TCTAGTGTGT
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
27 30 0.37
28 24 0.29
29 28 0.34
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (28 bp):
AGGCTTCCATTTTCATAGATTGCCACAA
Found at i:32813297 original size:15 final size:17
Alignment explanation
Indices: 32813277--32813309 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
32813267 ATTCTAATTG
32813277 GAAGCAT-G-AACAACT
1 GAAGCATAGAAACAACT
32813292 GAAGCATAGAAACAACT
1 GAAGCATAGAAACAACT
32813309 G
1 G
32813310 TTGCGTGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 1 0.06
17 8 0.50
ACGTcount: A:0.48, C:0.18, G:0.21, T:0.12
Consensus pattern (17 bp):
GAAGCATAGAAACAACT
Done.