Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 102 of 250
Found at i:33155669 original size:20 final size:20
Alignment explanation
Indices: 33155646--33155683 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
33155636 ATTTATTCGC
*
33155646 GATTTTTAATATTTTGTAAA
1 GATTTTTAAAATTTTGTAAA
33155666 GATTTTTAAAATTTTGTA
1 GATTTTTAAAATTTTGTA
33155684 TTTGGATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (20 bp):
GATTTTTAAAATTTTGTAAA
Found at i:33159924 original size:300 final size:300
Alignment explanation
Indices: 33159072--33160273 Score: 1267
Period size: 301 Copynumber: 4.0 Consensus size: 300
33159062 AATAACATTT
* * *
33159072 CTACCCCTTATCGCACTTGTGCCTCGAATTTGAATGCAAATTCGACCAAATAA-AGTTTCAAATG
1 CTACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCAACCAAAGAACA-TTTCAAATG
* ** *
33159136 ATTTATTTCACAAAACGTAAATAACTAATTAAATAAATGATGTTTAGAAAATGCAAATAAAAATA
65 ATTTATTTCGCAAAACACAAATAACTAATTAAATAAATGATGTTTAGAAAACGCAAATAAAAA-A
** * * * * * * *
33159201 ATTATATAAAATCTAATGAGAGGGGTGCAACACAAAGAATTTCGAAAAGGTCACCCATCCTAGTA
129 ATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTA
* * * * * *
33159266 CTACTCTCTCCCAAGCACGCTTAACAATGAAGTTCTGATGGAATCCAGTGCATTAGTTTTGGTAT
194 CTACTCTCACCCAAGCACGCTTAACTACGAAGTTCTGATGGGATCCGGTGCATTAGTGTTGGTAT
* * * *
33159331 TATCGGACTCGTCAATTCTTGTGGAATCTATTTACATAAAGG
259 AATCGCACTCGTCAATTCTTGCGCAATCTATTTACATAAAGG
* * * ** * *
33159373 CTACCCCTTATCACACTTGCGCCTCAAATTTGAATACAAATTTGACCAAATG-GCATTTCAATTG
1 CTACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCAACCAAA-GAACATTTCAAATG
* * * * * * *
33159437 ATTTATTTTGCAAAACACAAATAACTATTTAAATACATGATGTGTAAAAAACACAATTAATAAAA
65 ATTTATTTCGCAAAACACAAATAACTAATTAAATAAATGATGTTTAGAAAACGCAAATAA-AAAA
* *
33159502 ATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC-AGCAAGACACCCATCCTAGT
129 ATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAG-AGGTCACCCATCCTAGT
* * * * * * * *
33159566 ACTGCTCTCACCCAAGCACGTTTAGCAATGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTA
193 ACTACTCTCACCCAAGCACGCTTAACTACGAAGTTCTGATGGGATCCGGTGCATTAGTGTTGGTA
* ** *
33159631 TAATCGCAC-CTGTTAATTCTTGCATAATCTGTTTACATAAAGG
258 TAATCGCACTC-GTCAATTCTTGCGCAATCTATTTACATAAAGG
* *
33159674 CTACCGCTTATCGCACTTGCACCTCGAATTCT-AATG-AAATTTCAACCAAAGAACATTTCAAAT
1 CTACCCCTTATCGCACTTGCGCCTCGAATT-TGAATGCAAA-TTCAACCAAAGAACATTTCAAAT
* *
33159737 GATTTATTTTGCAAAACAAAAATAACTAATTAAATAAATGATGTTTAGAAAACGCAAATAAAAAA
64 GATTTATTTCGCAAAACACAAATAACTAATTAAATAAATGATGTTTAGAAAACGCAAATAAAAAA
* * **
33159802 ATTATATAAAATAAAATGGGAGGGGTCCAACACGAGGACTTTCCGGGAGGTCACCCATCCTAGTA
129 ATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTA
* * *
33159867 CTACTCTCGCCCGAA-CACGCTTGACTGCTG-AGTTCTGATGGGATCCGGTGCATTAGTGTTGGT
194 CTACTCTCACCC-AAGCACGCTTAACTAC-GAAGTTCTGATGGGATCCGGTGCATTAGTGTTGGT
* * ** * *
33159930 ATGATCACACTCGTCAACCCTTGCGCAATCTATTTATATAAACG
257 ATAATCGCACTCGTCAATTCTTGCGCAATCTATTTACATAAAGG
* * * * *
33159974 TTACCCCTTATTGCACTTGCGCCAT-GAATTTGAATGCAAATTCAACCAAATAACGTTTCAAATT
1 CTACCCCTTATCGCACTTGCGCC-TCGAATTTGAATGCAAATTCAACCAAAGAACATTTCAAATG
* ** ** *
33160038 ATTTATTTCGCAAAACGCAAATAACTAATTAGTTAAACAATG-TT--------C--A-AAAAAAT
65 ATTTATTTCGCAAAACACAAATAACTAATTAAATAAATGATGTTTAGAAAACGCAAATAAAAAAA
* *
33160091 TTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATGCTACTAC
130 TTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTAC
* * * ** *
33160156 TGCTCTCATCCAGGCACGCTTAACTACGAAACTCTGATGGGATCCGGTGCATTAGTGTTGGTATG
195 TACTCTCACCCAAGCACGCTTAACTACGAAGTTCTGATGGGATCCGGTGCATTAGTGTTGGTATA
** * ** * * *
33160221 ATTACACCCGTCAACCCTTTCGCAATCTATTTATATAACGG
260 ATCGCACTCGTCAATTCTTGCGCAATCTATTTACATAAAGG
*
33160262 CCACCCCTTATC
1 CTACCCCTTATC
33160274 TGTAATAGCC
Statistics
Matches: 759, Mismatches: 125, Indels: 47
0.82 0.13 0.05
Matches are distributed among these distances:
287 2 0.00
288 163 0.21
289 1 0.00
291 1 0.00
299 3 0.00
300 232 0.31
301 352 0.46
302 5 0.01
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (300 bp):
CTACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCAACCAAAGAACATTTCAAATGA
TTTATTTCGCAAAACACAAATAACTAATTAAATAAATGATGTTTAGAAAACGCAAATAAAAAAAT
TATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACT
ACTCTCACCCAAGCACGCTTAACTACGAAGTTCTGATGGGATCCGGTGCATTAGTGTTGGTATAA
TCGCACTCGTCAATTCTTGCGCAATCTATTTACATAAAGG
Found at i:33160665 original size:12 final size:12
Alignment explanation
Indices: 33160648--33160672 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33160638 GAAATTAGCT
33160648 AAAGGAAAAGAA
1 AAAGGAAAAGAA
33160660 AAAGGAAAAGAA
1 AAAGGAAAAGAA
33160672 A
1 A
33160673 GCCATATTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAGGAAAAGAA
Found at i:33163265 original size:63 final size:66
Alignment explanation
Indices: 33163186--33163473 Score: 175
Period size: 68 Copynumber: 4.3 Consensus size: 66
33163176 ATTTAATTCG
*
33163186 GCTCTCTTGTAC-ACATGGTG-AACACTTAGTACCACTCATGCGACCTAGC-CGATTTA-TCT-C
1 GCTCTCTTGT-CTACATGGTGCAACACTTAGAACCACTCATGCGACCTAGCAC-ATTTACTCTAC
33163246 GTA
64 GTA
** * *
33163249 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACTCATGCGACCTAGCTACATTTATCTCT
1 GCTCTCTTGTCTACATGGTG--CAACACTTAGAACCACTCATGCGACCTAGC-ACATTTA-CTCT
33163314 CACGTA
62 -ACGTA
* ** * * * *
33163320 GCTCTCTTGTCTACATAG-G-ATACA-TCCCGTATCACACATGTGACCTAGCAACATTTATCTCT
1 GCTCTCTTGTCTACATGGTGCA-ACACT-TAGAACCACTCATGCGACCTAGC-ACATTTA-CTCT
33163382 CACGTA
62 -ACGTA
* ** * * * *
33163388 GCTCTGTTGTCTACATGG-G-ATACA-TCCCGTATCACACATGTGACCTAGCTACATTTATCTCT
1 GCTCTCTTGTCTACATGGTGCA-ACACT-TAGAACCACTCATGCGACCTAGC-ACATTTA-CTCT
33163450 CACGTA
62 -ACGTA
33163456 GCTCTCTTGTCTACATGG
1 GCTCTCTTGTCTACATGG
33163474 GATACATCGC
Statistics
Matches: 195, Mismatches: 18, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
62 1 0.01
63 18 0.09
66 24 0.12
67 6 0.03
68 121 0.62
69 3 0.02
70 1 0.01
71 21 0.11
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.33
Consensus pattern (66 bp):
GCTCTCTTGTCTACATGGTGCAACACTTAGAACCACTCATGCGACCTAGCACATTTACTCTACGT
A
Found at i:33163376 original size:68 final size:68
Alignment explanation
Indices: 33163282--33163507 Score: 398
Period size: 68 Copynumber: 3.3 Consensus size: 68
33163272 TTCACTTGGA
* * *
33163282 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
33163347 CGT
66 CGT
* *
33163350 ATCACACATGTGACCTAGCAACATTTATCTCTCACGTAGCTCTGTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
33163415 CGT
66 CGT
*
33163418 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCG
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
33163483 CGT
66 CGT
33163486 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
33163508 TATATAGTAT
Statistics
Matches: 150, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 150 1.00
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
CGT
Found at i:33163540 original size:136 final size:135
Alignment explanation
Indices: 33163282--33163533 Score: 382
Period size: 136 Copynumber: 1.9 Consensus size: 135
33163272 TTCACTTGGA
*
33163282 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCC
1 ATCACACATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCC
* * *
33163347 CGTATCACACATGTGACCTAGCAACATTTATCTCTCACGTAGCTCTGTTGTCTACATGGGATACA
66 CGTATCACACATGTGACCTAGCAACATATATATCT-ACGTAGCTCTCTTGTCTACATGGGATACA
33163412 TCCCGT
130 TCCCGT
* * *
33163418 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCG
1 ATCACACATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCC
*
33163483 CGTATCACACATGTGACCTAGCTACTATATAGTATCT-CGTAGC-CTTCTTGT
66 CGTATCACACATGTGACCTAGCAAC-ATATA-TATCTACGTAGCTC-TCTTGT
33163534 ACACATGATG
Statistics
Matches: 105, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
135 1 0.01
136 96 0.91
137 4 0.04
138 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (135 bp):
ATCACACATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCC
CGTATCACACATGTGACCTAGCAACATATATATCTACGTAGCTCTCTTGTCTACATGGGATACAT
CCCGT
Found at i:33163563 original size:136 final size:135
Alignment explanation
Indices: 33163288--33163575 Score: 361
Period size: 136 Copynumber: 2.1 Consensus size: 135
33163278 TGGAATCACT
*
33163288 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCCCGTATC
1 CATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCCCGTATC
* * * * *
33163353 ACACATGTGACCTAGCAACATTTATCTCTCACGTAGCTCTGTTGTCTACATGGGATACATCCCGT
66 ACACATGTGACCTAGCAACATATATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCAGC
*
33163418 ATCACA
130 ACCACA
* *
33163424 CATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCGCGTATC
1 CATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCCCGTATC
* * *
33163489 ACACATGTGACCTAGCTACTATATAGTATCT-CGTAGC-CTTCTTGTAC-ACATGATG-TGCA-C
66 ACACATGTGACCTAGCAAC-ATATA-TATCTACGTAGCTC-TCTTGT-CTACATG-GGATACATC
*
33163549 TCAGCACCATA
126 -CAGCACCACA
33163560 CATGTGACCTAGCTAC
1 CATGTGACCTAGCTAC
33163576 GCTCCCTCTA
Statistics
Matches: 133, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
135 2 0.02
136 121 0.91
137 6 0.05
138 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (135 bp):
CATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATAGGATACATCCCGTATC
ACACATGTGACCTAGCAACATATATATCTACGTAGCTCTCTTGTCTACATGGGATACATCCAGCA
CCACA
Found at i:33187601 original size:93 final size:93
Alignment explanation
Indices: 33187494--33187664 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
33187484 GCCCCTAAGT
* *
33187494 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33187559 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
33187587 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33187652 CGAGTTCGGATGC
66 CGAGTTCGGATGC
33187665 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:33187661 original size:46 final size:46
Alignment explanation
Indices: 33187489--33187661 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
33187479 AACCCGCCCC
* * *
33187489 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
33187535 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
33187583 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
33187628 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
33187662 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:33188111 original size:30 final size:30
Alignment explanation
Indices: 33188077--33188136 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
33188067 ATTTAATACG
33188077 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
33188107 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
33188137 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:33189105 original size:27 final size:27
Alignment explanation
Indices: 33189050--33189233 Score: 178
Period size: 27 Copynumber: 6.9 Consensus size: 27
33189040 TCCCAATTAA
* * **
33189050 TAAAATGATTG-TTTACCCTTATGACG
1 TAAAATGACTGTTTTTCCCTTATGGGG
33189076 TAAAATGACTGTTTTTCCCTTATGGGG
1 TAAAATGACTGTTTTTCCCTTATGGGG
33189103 TAAAAATGA-T-TATTTTCCCTTATGGGG
1 T-AAAATGACTGT-TTTTCCCTTATGGGG
* * *
33189130 T-AAATGACTATTTTGCCCTTATGGGC
1 TAAAATGACTGTTTTTCCCTTATGGGG
* *
33189156 TAAAATGACTGTTTTTCCCTTGTGAGG
1 TAAAATGACTGTTTTTCCCTTATGGGG
* * * **
33189183 TAAAATTACTGTTTTGCCCTTTTATGG
1 TAAAATGACTGTTTTTCCCTTATGGGG
* *
33189210 TAAGATGACTGTTTTACCCTTATG
1 TAAAATGACTGTTTTTCCCTTATG
33189234 TGATGTTGTT
Statistics
Matches: 131, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
25 6 0.05
26 26 0.20
27 92 0.70
28 7 0.05
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.41
Consensus pattern (27 bp):
TAAAATGACTGTTTTTCCCTTATGGGG
Found at i:33190180 original size:43 final size:45
Alignment explanation
Indices: 33190097--33190184 Score: 153
Period size: 43 Copynumber: 2.0 Consensus size: 45
33190087 CATAAGAAAA
*
33190097 CCCAAAACTCCTGAAGGAACTTGAAGGGAGATCTTTAGTCTTGAT
1 CCCAAAACTCCTGAAGGAACTTGAAGGGAGATCTTCAGTCTTGAT
33190142 CCCAAAACTCCT-AAGGAACTTGAA-GGAGATCTTCAGTCTTGAT
1 CCCAAAACTCCTGAAGGAACTTGAAGGGAGATCTTCAGTCTTGAT
33190185 GATGAATTCG
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
43 18 0.43
44 12 0.29
45 12 0.29
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (45 bp):
CCCAAAACTCCTGAAGGAACTTGAAGGGAGATCTTCAGTCTTGAT
Found at i:33193716 original size:21 final size:19
Alignment explanation
Indices: 33193674--33193716 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
33193664 TTTGTTTTTC
* *
33193674 TTTCTTTTCTTCCTTCCAA
1 TTTCTATTCTTCCTACCAA
33193693 TTTCTATTCTTCTCTACACAA
1 TTTCTATTCTTC-CTAC-CAA
33193714 TTT
1 TTT
33193717 TCTTTGTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 3 0.15
21 6 0.30
ACGTcount: A:0.16, C:0.28, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTCTATTCTTCCTACCAA
Found at i:33194345 original size:16 final size:16
Alignment explanation
Indices: 33194323--33194362 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
33194313 TATCTATTAG
33194323 AAAAAGCCGAAATGCC
1 AAAAAGCCGAAATGCC
* *
33194339 GAAAAGCTGAAATGCC
1 AAAAAGCCGAAATGCC
33194355 AAAAAGCC
1 AAAAAGCC
33194363 AAAAGTTTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.20, T:0.07
Consensus pattern (16 bp):
AAAAAGCCGAAATGCC
Found at i:33194652 original size:29 final size:29
Alignment explanation
Indices: 33194612--33194699 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 29
33194602 GCAAATAAAT
*
33194612 GTGATTTAGGCCTAATGGGCCATATATAG
1 GTGATTTGGGCCTAATGGGCCATATATAG
33194641 GTGATTTGGGCCTAATGGGCCATATGAATA-
1 GTGATTTGGGCCTAATGGGCCATAT--ATAG
* * *
33194671 -TGA-TTGGGCTTAATGGGCCAGATACAG
1 GTGATTTGGGCCTAATGGGCCATATATAG
33194698 GT
1 GT
33194700 ATGTGAAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
26 2 0.04
28 19 0.37
29 27 0.53
31 3 0.06
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.30
Consensus pattern (29 bp):
GTGATTTGGGCCTAATGGGCCATATATAG
Found at i:33196482 original size:27 final size:27
Alignment explanation
Indices: 33196452--33196595 Score: 182
Period size: 27 Copynumber: 5.3 Consensus size: 27
33196442 TACTGAAATG
* *
33196452 CCCTCGATTTGTAAAATTACTGTTTTA
1 CCCTCGATTTATAAAATTACTATTTTA
* * *
33196479 CCCTCAATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACTATTTTA
*
33196506 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTATAAAATTACTATTTTA
* *
33196533 CCCTCGATTTATAAAATAACCATTTTA
1 CCCTCGATTTATAAAATTACTATTTTA
* *
33196560 CCCTC-AGTTTACAAAATTACTGTTTTA
1 CCCTCGA-TTTATAAAATTACTATTTTA
33196587 CCCTCGATT
1 CCCTCGATT
33196596 GTGAAATTAC
Statistics
Matches: 101, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 99 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACTATTTTA
Found at i:33196510 original size:54 final size:54
Alignment explanation
Indices: 33196452--33196591 Score: 201
Period size: 54 Copynumber: 2.6 Consensus size: 54
33196442 TACTGAAATG
* * *
33196452 CCCTCGATTTGTAAAATTACTGTTTTACCCTCAATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACTGTTTTACCCTCAATTTATAAAATAACCATTTTA
* * *
33196506 CCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAAAATAACCATTTTA
1 CCCTCGATTTATAAAATTACTGTTTTACCCTCAATTTATAAAATAACCATTTTA
*
33196560 CCCTC-AGTTTACAAAATTACTGTTTTACCCTC
1 CCCTCGA-TTTATAAAATTACTGTTTTACCCTC
33196592 GATTGTGAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
53 1 0.01
54 75 0.99
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.41
Consensus pattern (54 bp):
CCCTCGATTTATAAAATTACTGTTTTACCCTCAATTTATAAAATAACCATTTTA
Found at i:33196847 original size:110 final size:105
Alignment explanation
Indices: 33196627--33196884 Score: 270
Period size: 110 Copynumber: 2.4 Consensus size: 105
33196617 TGTAGGATAG
* **
33196627 AATTACCAAAATATCCCTAGTTTGTAAAATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAAA
1 AATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACCAAAA
* * * ***
33196691 TACCCTAGTTTGTAAATTACTGAAATACCACTGGTTTGTGA
65 CACCCTACTTTCTAAATTACTGAAATACCACTGGTTTACAA
* *
33196732 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTA-CAGAA
1 AATTACCAAAATACCCT-AGTTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACCA-AA
*
33196796 ACACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAA
64 ACACCC-T-ACTTTCT--AAATTACT-GAAATACCACTGGTTTACAA
* * * *
33196842 AATTACTAAAATACCCTTGGTTTGTAAATTTACCAAAACACCC
1 AATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAATACCC
33196885 TTGTAGGATG
Statistics
Matches: 126, Mismatches: 18, Indels: 13
0.80 0.11 0.08
Matches are distributed among these distances:
104 4 0.03
105 35 0.28
106 22 0.17
107 1 0.01
108 5 0.04
109 1 0.01
110 57 0.45
111 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (105 bp):
AATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACCAAAAC
ACCCTACTTTCTAAATTACTGAAATACCACTGGTTTACAA
Found at i:33196887 original size:27 final size:27
Alignment explanation
Indices: 33196627--33196886 Score: 210
Period size: 27 Copynumber: 9.7 Consensus size: 27
33196617 TGTAGGATAG
33196627 AATTACCAAAATATCCC-TAGTTTGTAA
1 AATTACCAAAATA-CCCTTAGTTTGTAA
33196654 AATTACCAAAATACCC-TAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
33196680 AATTACCAAAATACCC-TAGTTTGT-A
1 AATTACCAAAATACCCTTAGTTTGTAA
** * *
33196705 AATTACTGAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTAGTTTGTAA
* * *
33196732 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * **
33196759 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * *
33196786 AATTA-CAGAAACACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTT-AGTTTGT-AA
* * * **
33196815 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTAGTTTGTAA
* *
33196842 AATTACTAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
33196869 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
33196887 GTAGGATGAA
Statistics
Matches: 195, Mismatches: 31, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
25 14 0.07
26 48 0.25
27 107 0.55
28 9 0.05
29 17 0.09
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:33196948 original size:27 final size:27
Alignment explanation
Indices: 33196905--33196978 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
33196895 AAATGACTAA
*
33196905 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
33196932 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
33196959 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
33196979 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:33196982 original size:27 final size:27
Alignment explanation
Indices: 33196918--33196982 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
33196908 ACCCCTAATA
*
33196918 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
33196945 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
33196972 GGTAAAATGAC
1 GGTAAAATGAC
33196983 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:33197830 original size:25 final size:25
Alignment explanation
Indices: 33197792--33197886 Score: 129
Period size: 25 Copynumber: 3.8 Consensus size: 25
33197782 AGGAAGTGCT
* *
33197792 AAAAGGGCTATGCCTCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
33197817 AAAAGGGTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
33197842 AAAAGGGCTTTGTCCCAGTTTA-TG
1 AAAAGGGCTTTGCCCCAGTTTACCG
33197866 AAAAAGGGCTTTGCCCCAGTT
1 -AAAAGGGCTTTGCCCCAGTT
33197887 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
24 1 0.02
25 61 0.98
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:33197899 original size:24 final size:25
Alignment explanation
Indices: 33197792--33197899 Score: 91
Period size: 25 Copynumber: 4.4 Consensus size: 25
33197782 AGGAAGTGCT
* * *
33197792 AAAAG-GGCTATGCCTCAGTTTACCG
1 AAAAGAGGCTTTGCCCCAGTTTA-TG
* *
33197817 AAAAG-GGTTTTGCCCCAGTTTACCG
1 AAAAGAGGCTTTGCCCCAGTTTA-TG
*
33197842 AAAAG-GGCTTTGTCCCAGTTTATG
1 AAAAGAGGCTTTGCCCCAGTTTATG
*
33197866 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATG
33197890 AAAAGAGGCT
1 AAAAGAGGCT
33197900 AGCCCTCTAG
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
24 17 0.24
25 55 0.76
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATG
Found at i:33198093 original size:42 final size:42
Alignment explanation
Indices: 33198034--33198125 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
33198024 TAGTCTCCCC
*
33198034 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
33198076 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
33198118 AAATGGGC
1 AAATGGGC
33198126 CTATGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:33200559 original size:6 final size:6
Alignment explanation
Indices: 33200548--33200614 Score: 64
Period size: 6 Copynumber: 10.8 Consensus size: 6
33200538 TATCAGAGCT
* * *
33200548 AGAATC AGAATC AGAATC AAAATT AGAATC AGAATC AGTATC AGGTAA-C
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
*
33200597 AGAATC AAAAATC AGAAT
1 AGAATC -AGAATC AGAAT
33200615 GTGAATGCAA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
5 2 0.04
6 38 0.78
7 8 0.16
8 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.15, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:33201416 original size:27 final size:27
Alignment explanation
Indices: 33201385--33201795 Score: 551
Period size: 27 Copynumber: 15.3 Consensus size: 27
33201375 GGGGTAAAAT
* * * *
33201385 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
33201412 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
33201439 AGTAATTCTACCC-ACGGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
33201465 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
33201492 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
33201519 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
33201546 GGTAATTCTACCCAATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
33201573 GGTAATTCTACCCTACAAGGGTATTGT-
1 GGTAATTCTACCCTACAGGGGTATT-TC
* *
33201600 GATAATTCTACCCTATAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
33201626 TGGTAATTCTACCATACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
*
33201654 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
33201681 GGTAATTCTACCCTACATGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
33201707 TAGTAATTCTACCCTACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* *
33201735 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
33201762 AATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
33201789 GGTAATT
1 GGTAATT
33201796 TCACAAATCA
Statistics
Matches: 344, Mismatches: 33, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
25 1 0.00
26 26 0.08
27 310 0.90
28 7 0.02
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:33201822 original size:54 final size:54
Alignment explanation
Indices: 33201385--33201849 Score: 512
Period size: 54 Copynumber: 8.6 Consensus size: 54
33201375 GGGGTAAAAT
* * * * * * *
33201385 GGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTC
* * *
33201439 AGTAATTCTACCC-ACGGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTC
* * *
33201492 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTC
* * * *
33201546 GGTAATTCTACCCAATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTGT-
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATT-TC
* *
33201600 GATAATTCTACCCTATAGGGGTA-TTCTGGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC-GGTAATTCTACCATACAGGGGTATTTC
* * *
33201654 GGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACATGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTC
* * * *
33201707 TAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTC
** * * *
33201762 AATAATTCTACCCTACAAGGGTATTTCGGTAATT-T-CACAAATCAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC-CATA-CAGGGGTATTTC
* ** *
33201816 GGTAATTTTA-CAAACCAGGGGTATTTTGGTAATT
1 GGTAATTCTACCCTA-CAGGGGTATTTCGGTAATT
33201850 TTATTGATCG
Statistics
Matches: 358, Mismatches: 43, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
52 1 0.00
53 59 0.16
54 292 0.82
55 6 0.02
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACAGGGGTATTTC
Found at i:33201851 original size:27 final size:27
Alignment explanation
Indices: 33201780--33201905 Score: 119
Period size: 27 Copynumber: 4.7 Consensus size: 27
33201770 TACCCTACAA
* * *
33201780 GGGTATTTCGGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
33201807 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*** *
33201834 GGGTATTTTGGTAATTTTATTGATC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
33201860 AGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTTGGTAATTTTACAAACCAG
* **
33201888 AGGTATTTCAGTAATTTT
1 GGGTATTTTGGTAATTTT
33201906 GTAAATCGAG
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 81 0.99
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:33201885 original size:54 final size:54
Alignment explanation
Indices: 33201781--33201937 Score: 154
Period size: 54 Copynumber: 2.9 Consensus size: 54
33201771 ACCCTACAAG
* * * ** **
33201781 GGTATTTCGGTAATTTCACAAATC-AGGGGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTCAGTAATTTTATAAATCGA-GGGTATTTTGGTAATTTTGTAAACCAAA
** **
33201835 GGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAA
1 GGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAACCAAA
* *** *
33201889 GGTATTTCAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAA
1 GGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAA
33201938 TCGAGGGTAA
Statistics
Matches: 84, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
54 83 0.99
55 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (54 bp):
GGTATTTCAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAACCAAA
Found at i:33201927 original size:81 final size:81
Alignment explanation
Indices: 33201842--33202119 Score: 322
Period size: 81 Copynumber: 3.4 Consensus size: 81
33201832 AGGGGTATTT
* ** *** * *** *
33201842 TGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTCAGTAATTTTG
1 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAAGGTAAGACAGTAATTCTG
33201907 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * *
33201923 TGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAGACGGTAATTCTG
1 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAAGGTAAGACAGTAATTCTG
33201988 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * **
33202004 TGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCAAAGGTAAAATGGTAATTCTG
1 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAAGGTAAGACAGTAATTCTG
**
33202069 TAAATCTTGGGTAAAA
66 TAAATCGAGGGTAAAA
* * *
33202085 CGATAATTCTATAAATTGAGGGTAAAATGGTAATT
1 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATT
33202120 CTATCTTACA
Statistics
Matches: 166, Mismatches: 31, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 166 1.00
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.33
Consensus pattern (81 bp):
TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAAGGTAAGACAGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:33202123 original size:27 final size:27
Alignment explanation
Indices: 33201898--33202121 Score: 313
Period size: 27 Copynumber: 8.3 Consensus size: 27
33201888 AGGTATTTCA
*
33201898 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
33201925 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
33201952 GTAATTCTGTAAATCGAGGGTAAGACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
33201979 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
33202006 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * * *
33202033 ATAATTTTGTAAATCAAAGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
** *
33202060 GTAATTCTGTAAATCTTGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
33202087 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
33202114 GTAATTCT
1 GTAATTCT
33202122 ATCTTACAGG
Statistics
Matches: 171, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 171 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:33202164 original size:27 final size:26
Alignment explanation
Indices: 33202134--33202254 Score: 122
Period size: 27 Copynumber: 4.5 Consensus size: 26
33202124 CTTACAGGAA
33202134 TATTTCAGTAATTTTACAAATCGAGGG
1 TATTTCAGTAATTTTACAAA-CGAGGG
*
33202161 TATTTCAGTAATTTTGCAAACTGAGGG
1 TATTTCAGTAATTTTACAAAC-GAGGG
* *
33202188 TATTTC-GATAATTTTATAAACCAGGGG
1 TATTTCAG-TAATTTTACAAACGA-GGG
* *
33202215 TACTTT-GGTAATTTTAC-AACTAGGGG
1 TA-TTTCAGTAATTTTACAAACGA-GGG
33202241 TATTTCAGTAATTT
1 TATTTCAGTAATTT
33202255 GGTAAACTAA
Statistics
Matches: 81, Mismatches: 7, Indels: 13
0.80 0.07 0.13
Matches are distributed among these distances:
25 3 0.04
26 20 0.25
27 54 0.67
28 4 0.05
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.40
Consensus pattern (26 bp):
TATTTCAGTAATTTTACAAACGAGGG
Found at i:33203905 original size:27 final size:27
Alignment explanation
Indices: 33203875--33203961 Score: 147
Period size: 27 Copynumber: 3.2 Consensus size: 27
33203865 TGAAATGCCA
*
33203875 TCGATTTGTAGAATTACCGTTTTACCC
1 TCGATTTATAGAATTACCGTTTTACCC
*
33203902 TCGATTTATAGAATTACCATTTTACCC
1 TCGATTTATAGAATTACCGTTTTACCC
*
33203929 TCGATTTACAGAATTACCGTTTTACCC
1 TCGATTTATAGAATTACCGTTTTACCC
33203956 TCGATT
1 TCGATT
33203962 GTGAAATTTC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.25, C:0.23, G:0.11, T:0.40
Consensus pattern (27 bp):
TCGATTTATAGAATTACCGTTTTACCC
Found at i:33204023 original size:27 final size:27
Alignment explanation
Indices: 33203993--33204143 Score: 196
Period size: 27 Copynumber: 5.6 Consensus size: 27
33203983 TGTAGGATAG
33203993 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
33204020 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
33204047 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
33204074 AATTACCGACATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
**
33204101 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
*
33204128 AATTACAAAAATACCC
1 AATTACCAAAATACCC
33204144 TTGACTTTCT
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:33204080 original size:81 final size:81
Alignment explanation
Indices: 33203993--33204142 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 81
33203983 TGTAGGATAG
* ** *
33203993 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTACAAAA
33204057 ATACCACTGGTTTGTGA
65 ATACCACTGGTTTGTGA
* * *
33204074 AATTACCGACATACCCTTAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAAAAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAAAAA
33204139 TACC
66 TACC
33204143 CTTGACTTTC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
81 60 0.98
82 1 0.02
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAAAAA
TACCACTGGTTTGTGA
Found at i:33204144 original size:54 final size:54
Alignment explanation
Indices: 33203993--33204226 Score: 193
Period size: 54 Copynumber: 4.3 Consensus size: 54
33203983 TGTAGGATAG
** *
33203993 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTACAAAATTACCAAAATACCCTTAGTTTGTAA
* * *** * * *
33204047 AATTACCAAAATACCACTGGTTTGTGAAATTACCGACATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCTTAGTTTGTAA
* * *
33204101 AATTACCAAAATACCCCTGATTTACAAAATTACAAAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCTT-AGTTTGT-AA
* ** * *** * *
33204157 AATTA-TAGAAATACCATTGGTTTACAAAATTATTGAAATACCCTTCGTTTGTAG
1 AATTACCA-AAATACCCCTGATTTACAAAATTACCAAAATACCCTTAGTTTGTAA
* *
33204211 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
33204227 TTGTAGGATG
Statistics
Matches: 143, Mismatches: 32, Indels: 10
0.77 0.17 0.05
Matches are distributed among these distances:
54 94 0.66
55 11 0.08
56 38 0.27
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCTTAGTTTGTAA
Found at i:33204168 original size:29 final size:27
Alignment explanation
Indices: 33204109--33204206 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
33204099 AAAATTACCA
* * * *
33204109 AAATACCCCTGATTTACAAAATTACAA
1 AAATACCCTTGGTTTACAAAATTATAG
*
33204136 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTG-GTTTAC--AAAATTATAG
* *
33204165 AAATACCATTGGTTTACAAAATTATTG
1 AAATACCCTTGGTTTACAAAATTATAG
*
33204192 AAATACCCTTCGTTT
1 AAATACCCTTGGTTT
33204207 GTAGATTTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
27 33 0.57
28 6 0.10
29 19 0.33
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (27 bp):
AAATACCCTTGGTTTACAAAATTATAG
Found at i:33205236 original size:24 final size:25
Alignment explanation
Indices: 33205134--33205225 Score: 107
Period size: 25 Copynumber: 3.7 Consensus size: 25
33205124 AGGAAGTGCT
* * *
33205134 AAAA-GGGCTATGCCCTAGTTTACTG
1 AAAAGGGGCTTTGCCCCAGTTTA-TC
*
33205159 AAAA-GGGCTTTGCCCCAGTTTACC
1 AAAAGGGGCTTTGCCCCAGTTTATC
* *
33205183 AAAAAGGGCTTTGCCTCAGTTTATC
1 AAAAGGGGCTTTGCCCCAGTTTATC
33205208 AAAAGGGGCTTTGCCCCA
1 AAAAGGGGCTTTGCCCCA
33205226 ATTATTAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
24 4 0.07
25 54 0.93
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGGCTTTGCCCCAGTTTATC
Found at i:33205435 original size:42 final size:42
Alignment explanation
Indices: 33205376--33205467 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
33205366 TAGTCTCCCC
*
33205376 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
33205418 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
33205460 AAATGGGC
1 AAATGGGC
33205468 CTATGGGCTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:33212342 original size:93 final size:93
Alignment explanation
Indices: 33212234--33212591 Score: 608
Period size: 93 Copynumber: 3.8 Consensus size: 93
33212224 GCCCATAAGT
* * * *
33212234 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCACAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
33212299 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
33212327 GAACTCGGACTCAACTTAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33212392 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
33212420 GAACTCAGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33212485 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
33212513 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
33212578 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
33212592 CAAATATCCT
Statistics
Matches: 252, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 252 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:33212351 original size:47 final size:47
Alignment explanation
Indices: 33212280--33212541 Score: 272
Period size: 47 Copynumber: 5.6 Consensus size: 47
33212270 ATCCACAAGT
*
33212280 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * *
33212327 GAACTCGGACTCAACTTAACGAGCTCGGA---C-ATTTGCATC-CATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-T---C
33212373 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * * * ***
33212420 GAACTCAGACTCAACTCAACGAGTTTGGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTCTC
33212466 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
*
33212513 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
33212542 CATTCGCATC
Statistics
Matches: 173, Mismatches: 26, Indels: 32
0.75 0.11 0.14
Matches are distributed among these distances:
42 1 0.01
43 9 0.05
44 5 0.03
46 58 0.34
47 85 0.49
49 5 0.03
50 9 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:33212587 original size:46 final size:46
Alignment explanation
Indices: 33212226--33212587 Score: 310
Period size: 46 Copynumber: 7.8 Consensus size: 46
33212216 TGTAACCCGC
* * *
33212226 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
33212272 CCACAAGTGAACTCGGACTCAACTCAATGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
33212318 ACATCTCTCGAACTCGGACTCAACTTAACGAGCTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
33212365 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * * *
33212411 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
33212458 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
33212504 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
33212551 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
33212588 TGCCCAAATA
Statistics
Matches: 248, Mismatches: 47, Indels: 42
0.74 0.14 0.12
Matches are distributed among these distances:
43 3 0.01
44 9 0.04
46 129 0.52
47 93 0.38
49 11 0.04
50 3 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:33220966 original size:40 final size:39
Alignment explanation
Indices: 33220892--33221111 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 39
33220882 AACCCAAGTA
* * *
33220892 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATATCAA-TAGCACAAATG
* *
33220931 CCTTCGGGTCTTAGCCCGGATATATTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATA-TCAATAGCACAAATG
* *
33220971 CCTTCGGGACTTAGCTCGGATATAGCAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATATCAA-T-AGCACAAATG
*
33221011 CCTTCGGGACTTAGCCTGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-TCAATAGCACAAATG
* *
33221051 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-TCAATAGCACAAATG
33221091 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
33221112 CTCATTCGAA
Statistics
Matches: 160, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
39 16 0.10
40 137 0.86
41 7 0.04
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATATCAATAGCACAAATG
Found at i:33221024 original size:80 final size:79
Alignment explanation
Indices: 33220892--33221111 Score: 334
Period size: 80 Copynumber: 2.8 Consensus size: 79
33220882 AACCCAAGTA
* * * *
33220892 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATT
1 CCTTCGGGACTTAGCCGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGT
33220957 CAATAGCACAAAAG
66 CAATAGCACAAAAG
*
33220971 CCTTCGGGACTTAGCTCGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCTGGATATAG
1 CCTTCGGGACTTAGC-CGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
33221036 TCAATAGCACAAATG
65 TCAATAGCACAAAAG
**
33221051 CCTTCGGGACTTAGCCCGGATATAGTTACT-AGCACAAATGCCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAG-CCGGATATAGCAACTCA-CACAAATGCCTTCGGGACTTAGCCCGGAT
33221112 CTCATTCGAA
Statistics
Matches: 129, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
79 15 0.12
80 113 0.88
81 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CAATAGCACAAAAG
Found at i:33245451 original size:286 final size:286
Alignment explanation
Indices: 33244554--33247030 Score: 3348
Period size: 286 Copynumber: 8.6 Consensus size: 286
33244544 TGTGACACTA
* ** * *
33244554 TTATATAAAGGCTACCACTTATCGCACAGGCGCCTCGAATTTGAATTTAAATTCGACTAAATAAT
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
* *
33244619 GTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTGAACGATGAGATATAAAAAAAATTACAT
66 ATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAATTACAT
* * *
33244684 GAGATATAAAATAGGCGGGGTGCAACACGAGGACTTCACAGGAGGTCACCCATCATAGTACTACT
131 GAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
* * *
33244749 CTCGCCCAAGCACGCTTAGCTGCGGAGTTCTGATGGGATCCGGTGCATTAGTACTGGTATGATCG
196 CTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCG
** * *
33244814 C-ACCCATCATTCTTGTGCATTCTAT
261 CAACCGTTAATTCTTGCGCATTCTAT
* * *
33244839 TTATGTAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAGTTCAAATTCGACCAAATAAC
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
* * ** * * *
33244904 GTTTAGAGTGATTTATTTCAAAAATAAATAATTAGTAAAATGATGAGATATAAAAAAAATTTACA
66 ATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAA-TTACA
* **
33244969 TGAGTTATAAAATAGGAGGGGTGCAACACGAGGACTT--CAAAAGGTCACCCATCCTAGTACTAC
130 TGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
* * * * * *
33245032 TCTCTCCCAATCACTCTTAACTGCAGAGTTCTGATGGGATCCAGTTCATTAGTGCTGGTATTATC
195 TCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
* * *
33245097 GCACCCGTCAATTCTTGCGCATTCTGT
260 GCAACCGTTAATTCTTGCGCATTCTAT
* *
33245124 TTATATAAAGGCTACCCCTTATCGCACTGGCGCCTCGAATTTGAATTCAAATTCGACCAAATAAC
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
*
33245189 ATTTCGAGTGATTTATTTTC-TACATAACTAATTAGTTAAACGATGAGATATAAAAAAAATTACA
66 ATTTCGAGTGATTTA-TTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAATTACA
* *
33245253 TGAGATATAAAATAGGAGGAGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCAAGTACTAC
130 TGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
* * * * *
33245318 TCTTGCCCAAGCACGCTTAATTGCAGAGTTCTGATGGGATCCTGTGCAGTAGTGCTGGTACGATC
195 TCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
*
33245383 GCAACTGTTAATTCTTGCGCATTCTAT
260 GCAACCGTTAATTCTTGCGCATTCTAT
* * * *
33245410 TTGTATAAAGGCTACCCCTTATTGCAATTGCGCCACGAATTTGAATTTAAATTCGACCAAATAAC
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
33245475 ATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAGAAAAATTAC
66 ATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATAT-AAA-AAAAATTAC
* * *
33245540 ATGAGGTATAAAATAGCAGGGGTGCAACATGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA
129 ATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA
* * * * * * *
33245605 CACTCGCCCAAGCACACTTGACTACGGACTTCTAATGGGATCCGGTGCATTAGTGCTGGTATGAA
194 CTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATG-A
* * * *
33245670 T-GCACCCGTCAATTCTTGTGGATTCTAT
258 TCGCAACCGTTAATTCTTGCGCATTCTAT
*
33245698 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGTCCAAATAAC
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
* *
33245763 GTTTCGAGTGATTTATTTCGTAAATAGCTAATTAGTTAAACGATGAGATATAAAAAAAATTACAT
66 ATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAATTACAT
* * *
33245828 GAGATATAAAAAAGGAGGAGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACT
131 GAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
* * * * * * * *
33245893 CTCGCCCAAGCACGCTTACCGGTAGAGTTCTAATGGGATTCGGTGCATTTGGGCTGATATGATCG
196 CTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCG
* *
33245958 C-ACTCGTCAATTGTTGCGCATTCTAT
261 CAAC-CGTTAATTCTTGCGCATTCTAT
* **
33245984 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAATTTAAATTCGAAAAAATAAC
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
* * *
33246049 ATTTCGAGTGATTTATATCATAAATAACTAATTAGTTAAACGATAAGATATATAAAAAAAATTAC
66 ATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGAT--GAGATATAAAAAAAATTAC
* * *
33246114 ATGAGATATAAAAATAGGAGGGGGTGCAACAGGAGGACTTCCCAGGAGGTTACCCATCCTTGTAC
129 ATGAGATAT-AAAATAGGA-GGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
* * * * * *
33246179 TACACTCGCCCAAGCACACTTAACTGCGGAGTTTTGATGGGATCCGATGTATTAGTGCTGGTATG
192 TACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATG
* * * *
33246244 ACCCCACCCGTCT-ATTCTTGAGCATTCTAT
257 ATCGCAACCGT-TAATTCTTGCGCATTCTAT
* * * * * * *
33246274 TTATATAAAGGCTACCACTTATCACACTTGCACCTCGAATTTGAATTTACATTCAAACAATTAAC
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
* * *
33246339 TTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACAATGTGATAT--AAAAAATTACAT
66 ATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAATTACAT
* * * ***
33246402 GAGATATAAAATAGGAGGGGTGCAACACGAGAATTTCCTAGGAGGTTCACATTTTCCT-GTACTA
131 GAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGG-TCAC-CCATCCTAGTACTA
* * * *
33246466 CTCTCAAACCC-A-CACGCTTAAACTG-TGAGTTCTAATGGGATCCGGAGCATTAGTGCTGGTAT
194 CTCTC--GCCCAAGCACGCTT-AACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTAT
* *
33246528 GATCGCAACCG-TCATTCTTGCACATTCTAT
256 GATCGCAACCGTTAATTCTTGCGCATTCTAT
* * *
33246558 TTATATAAAGGCTACCCCTTATTGCACTTGCGCCTCGAATTTGAATTTAAATTCTACGAAATAAC
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
* * * *
33246623 ATTTCGAGTAATTTGTTTTGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAACTACAT
66 ATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAATTACAT
* *
33246688 GAGATA-AAAACTAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAGCCCAGTACTAC
131 GAGATATAAAA-TAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
* * *
33246752 TCTCGCCCAAGCACGCTTAATTGCAGAGATCTGATGGGATCCGGTGCAGTAGTGCTGGTATGATC
195 TCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
**
33246817 GC-ACGCGTTAATTCTTGCTTATTCTAT
260 GCAAC-CGTTAATTCTTGCGCATTCTAT
** *
33246844 TTGCATAAAGGCTACCCCTTATCGCAATTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
*
33246909 GTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAGAAAAATTAC
66 ATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATAT-AAA-AAAAATTAC
* * *
33246974 ATGAGGTATAAAATAGCAGGGGTGCAACATGAGGACTTCCCAGGAGGTCACCCATCC
129 ATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCC
33247031 GGGGAAGTCC
Statistics
Matches: 1913, Mismatches: 244, Indels: 67
0.86 0.11 0.03
Matches are distributed among these distances:
283 4 0.00
284 271 0.14
285 375 0.20
286 688 0.36
287 12 0.01
288 339 0.18
289 14 0.01
290 209 0.11
291 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (286 bp):
TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
ATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAATTACAT
GAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT
CTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCG
CAACCGTTAATTCTTGCGCATTCTAT
Found at i:33245777 original size:574 final size:573
Alignment explanation
Indices: 33244554--33247030 Score: 3397
Period size: 574 Copynumber: 4.3 Consensus size: 573
33244544 TGTGACACTA
* ** * *
33244554 TTATATAAAGGCTACCACTTATCGCACAGGCGCCTCGAATTTGAATTTAAATTCGACTAAATAAT
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
*
33244619 GTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTGAACGATGAGATATAAAAAAAATTACAT
66 GTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAATTACAT
* *
33244684 GAGATATAAAATAGGCGGGGTGCAACACGAGGACTTCACAGGAGGTCACCCAT-CATAGTACTAC
131 GAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCA-AGTACTAC
* * * *
33244748 TCTCGCCCAAGCACGCTTAGCTGCGGAGTTCTGATGGGATCCGGTGCATTAGTACTGGTATGATC
195 TCTCGCCCAAGCACGCTTAACTGCAGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATGATC
** * * *
33244813 GCACCCATCATTCTTGTGCATTCTATTTATGTAAAGGCTACCCCTTATCGCACTTGCGCCTCGAA
260 GCACCGTTAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAA
* * * * * * *
33244878 TTTGAGTTCAAATTCGACCAAATAACGTTTAGAGTGATTTATTTCAAAAATAAATAATTAGTAAA
325 TTTGAATTTAAATTCGACCAAATAACATTTCGAGTGATTTATTTCATAAATAACTAATTAGTTAA
* * *
33244943 ATGATGAGATATAAAAAAAATTTACATGAGTTATAAAATAGGAGGGGTGCAACACGAGGACTT--
390 ACGATGAGATATAAAAAAAAATTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCC
** * * * *
33245006 CAAAAGGTCACCCATCCTAGTACTACTCTCTCCCAATCACTCTTAACTGCAGAGTTCTGATGGGA
455 CAGGAGGTCACCCATCCTAGTACTACACTCGCCCAAGCACACTTAACTGCAGAGTTCTGATGGGA
* * * * *
33245071 TCCAGTTCATTAGTGCTGGTAT-TATCGCACCCGTCAATTCTTGCGCATTCTGT
520 TCCGGTGCATTAGTGCTGGTATGAATCGCACCCGTCAATTCTTGTGCATTCTAT
* *
33245124 TTATATAAAGGCTACCCCTTATCGCACTGGCGCCTCGAATTTGAATTCAAATTCGACCAAATAAC
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
* *
33245189 ATTTCGAGTGATTTATTTTC-TACATAACTAATTAGTTAAACGATGAGATATAAAAAAAATTACA
66 GTTTCGAGTGATTTA-TTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAATTACA
*
33245253 TGAGATATAAAATAGGAGGAGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCAAGTACTAC
130 TGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCAAGTACTAC
* * * * * *
33245318 TCTTGCCCAAGCACGCTTAATTGCAGAGTTCTGATGGGATCCTGTGCAGTAGTGCTGGTACGATC
195 TCTCGCCCAAGCACGCTTAACTGCAGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATGATC
* * * * *
33245383 GCAACTGTTAATTCTTGCGCATTCTATTTGTATAAAGGCTACCCCTTATTGCAATTGCGCCACGA
260 GC-ACCGTTAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGA
*
33245448 ATTTGAATTTAAATTCGACCAAATAACATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTA
324 ATTTGAATTTAAATTCGACCAAATAACATTTCGAGTGATTTATTTCATAAATAACTAATTAGTTA
* * *
33245513 AACGATGAGATATAAAAGAAAAATTACATGAGGTATAAAATAGCAGGGGTGCAACATGAGGACTT
389 AACGATGAGATATAAAA-AAAAATTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTT
* * * * *
33245578 CCCAGGAGGTCACCCATCCTAGTACTACACTCGCCCAAGCACACTTGACTACGGACTTCTAATGG
453 CCCAGGAGGTCACCCATCCTAGTACTACACTCGCCCAAGCACACTTAACTGCAGAGTTCTGATGG
*
33245643 GATCCGGTGCATTAGTGCTGGTATGAAT-GCACCCGTCAATTCTTGTGGATTCTAT
518 GATCCGGTGCATTAGTGCTGGTATGAATCGCACCCGTCAATTCTTGTGCATTCTAT
*
33245698 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGTCCAAATAAC
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
*
33245763 GTTTCGAGTGATTTATTTCGTAAATAGCTAATTAGTTAAACGATGAGATATAAAAAAAATTACAT
66 GTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAATTACAT
* * * *
33245828 GAGATATAAAAAAGGAGGAGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACT
131 GAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCAAGTACTACT
* * * * * * *
33245893 CTCGCCCAAGCACGCTTACCGGTAGAGTTCTAATGGGATTCGGTGCATTTGGGCTGATATGATCG
196 CTCGCCCAAGCACGCTTAACTGCAGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATGATCG
* * *
33245958 CACTCGTCAATTGTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAA
261 CAC-CGTTAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAA
** *
33246023 TTTGAATTTAAATTCGAAAAAATAACATTTCGAGTGATTTATATCATAAATAACTAATTAGTTAA
325 TTTGAATTTAAATTCGACCAAATAACATTTCGAGTGATTTATTTCATAAATAACTAATTAGTTAA
* *
33246088 ACGATAAGATATATAAAAAAAATTACATGAGATATAAAAATAGGAGGGGGTGCAACAGGAGGACT
390 ACGATGAGATATA-AAAAAAAATTACATGAGATAT-AAAATAGGA-GGGGTGCAACACGAGGACT
* * * *
33246153 TCCCAGGAGGTTACCCATCCTTGTACTACACTCGCCCAAGCACACTTAACTGCGGAGTTTTGATG
452 TCCCAGGAGGTCACCCATCCTAGTACTACACTCGCCCAAGCACACTTAACTGCAGAGTTCTGATG
* * * * * *
33246218 GGATCCGATGTATTAGTGCTGGTATG-ACCCCACCCGTCTATTCTTGAGCATTCTAT
517 GGATCCGGTGCATTAGTGCTGGTATGAATCGCACCCGTCAATTCTTGTGCATTCTAT
* * * * * * *
33246274 TTATATAAAGGCTACCACTTATCACACTTGCACCTCGAATTTGAATTTACATTCAAACAATTAAC
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
* * *
33246339 TTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACAATGTGATAT--AAAAAATTACAT
66 GTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAATTACAT
* * * *** *
33246402 GAGATATAAAATAGGAGGGGTGCAACACGAGAATTTCCTAGGAGGTTCACATTTTCC-TGTACTA
131 GAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGG-TCAC-CCATCCAAGTACTA
* * *
33246466 CTCTCAAACCC-A-CACGCTTAAACTG-TGAGTTCTAATGGGATCCGGAGCATTAGTGCTGGTAT
194 CTCTC--GCCCAAGCACGCTT-AACTGCAGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTAT
* * *
33246528 GATCGCAACCG-TCATTCTTGCACATTCTATTTATATAAAGGCTACCCCTTATTGCACTTGCGCC
256 GATCGC-ACCGTTAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCC
* * * * **
33246592 TCGAATTTGAATTTAAATTCTACGAAATAACATTTCGAGTAATTTGTTTTGTAAATAACTAATTA
320 TCGAATTTGAATTTAAATTCGACCAAATAACATTTCGAGTGATTTATTTCATAAATAACTAATTA
*
33246657 GTTAAACGATGAGATAT-AAAAAAAACTACATGAGATA-AAAACTAGGAGGGGTGCAACACGAGG
385 GTTAAACGATGAGATATAAAAAAAAATTACATGAGATATAAAA-TAGGAGGGGTGCAACACGAGG
* * * * * *
33246720 ACTTCCCAGGAGGTCACCCAGCCCAGTACTACTCTCGCCCAAGCACGCTTAATTGCAGAGATCTG
449 ACTTCCCAGGAGGTCACCCATCCTAGTACTACACTCGCCCAAGCACACTTAACTGCAGAGTTCTG
* * * *
33246785 ATGGGATCCGGTGCAGTAGTGCTGGTATG-ATCGCACGCGTTAATTCTTGCT-TATTCTAT
514 ATGGGATCCGGTGCATTAGTGCTGGTATGAATCGCACCCGTCAATTCTTG-TGCATTCTAT
** *
33246844 TTGCATAAAGGCTACCCCTTATCGCAATTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
1 TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
33246909 GTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAGAAAAATTAC
66 GTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATAT-AAA-AAAAATTAC
* * *
33246974 ATGAGGTATAAAATAGCAGGGGTGCAACATGAGGACTTCCCAGGAGGTCACCCATCC
129 ATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCC
33247031 GGGGAAGTCC
Statistics
Matches: 1683, Mismatches: 199, Indels: 48
0.87 0.10 0.02
Matches are distributed among these distances:
570 459 0.27
571 136 0.08
572 65 0.04
573 11 0.01
574 698 0.41
575 75 0.04
576 236 0.14
577 3 0.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (573 bp):
TTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAAC
GTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAAATTACAT
GAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCAAGTACTACT
CTCGCCCAAGCACGCTTAACTGCAGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATGATCG
CACCGTTAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAAT
TTGAATTTAAATTCGACCAAATAACATTTCGAGTGATTTATTTCATAAATAACTAATTAGTTAAA
CGATGAGATATAAAAAAAAATTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
AGGAGGTCACCCATCCTAGTACTACACTCGCCCAAGCACACTTAACTGCAGAGTTCTGATGGGAT
CCGGTGCATTAGTGCTGGTATGAATCGCACCCGTCAATTCTTGTGCATTCTAT
Found at i:33246397 original size:860 final size:853
Alignment explanation
Indices: 33244554--33247030 Score: 3418
Period size: 860 Copynumber: 2.9 Consensus size: 853
33244544 TGTGACACTA
** *
33244554 TTATATAAAGGCTACCACTTATCGCACAGGCGCCTCGAATTTGAATTTAAATTCGACTAAATAA-
1 TTATATAAAGGCTACCACTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCAAC-AAATAAC
*
33244618 TGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTGAACGATGAGATATAAAAAAAATTACA
65 T-TTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATAT-AAAAAAATTACA
* *
33244683 TGAGATATAAAATAGGC-GGGGTGCAACACGAGGACTTCACAGGAGGTCACCCATCATAGTACTA
128 TGAGATATAAAATA-GCAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA
* * *
33244747 CTCTCGCCCAAGCACGCTTAGCTGCGGAGTTCTGATGGGATCCGGTGCATTAGTACTGGTATGAT
192 CTCTCGCCCAAGCACGCTTA-CTACGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATGAT
* *
33244812 CGCACCCATCATTCTTGTGCATTCTATTTATGTAAAGGCTACCCCTTATCGCACTTGCGCCTCGA
256 CGCACCCGTCATTCTTGTGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGA
* * * * ** * *
33244877 ATTTGAGTTCAAATTCGACCAAATAACGTTTAGAGTGATTTATTTCAAAAATAAATAATTAGTAA
321 ATTTGAATTTAAATTCGTCCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTA
* *
33244942 AATGATGAGATATAAAAAAAATTTACATGAGTTATAAAATAGGAGGGGTGCAACACGAGGACTT-
386 AACGATGAGATATAAAAAAAA-TTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTC
** * * *
33245006 CAAAAGGTCACCCATCCTAGTACTACTCTCTCCCAATCACTCTTAACTGCAGAGTTCTGATGGGA
450 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGA
* * * *
33245071 TCCAGTTCATTAGTGCTGGTATTATCGCACCCGTCAATTCTTGCGCATTCTGTTTATATAAAGGC
515 TCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGGC
* *
33245136 TACCCCTTATCGCACTGGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACATTTCGAGTGAT
580 TACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAACATTTCGAGTGAT
* *
33245201 TTATTTTCTACATAACTAATTAGTTAAACGAT-GAGATATAAAAAAAATTACATGAGATATAAAA
645 TTA-TTTCTAAATAACTAATTAGTTAAACGATAGATATATAAAAAAAATTACATGAGATATAAAA
* * *
33245265 TAGGAGGAGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCAAGTACTACTCTTGCCCAAGC
709 TAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCAAGTACTACACTCGCCCAAGC
* * * * *
33245330 ACGCTTAATTGCAGAGTTCTGATGGGATCCTGTGCAGTAGTGCTGGTACGATCGCAACTGTTAAT
774 ACACTTAACTGCAGAGTTCTGATGGGATCCTGTGCAGTAGTGCTGGTACGACCCCAACCGTTAAT
*
33245395 TCTTGCGCATTCTAT
839 TCTTGAGCATTCTAT
* * * * * *
33245410 TTGTATAAAGGCTACCCCTTATTGCAATTGCGCCACGAATTTGAATTTAAATTCGACCAAATAAC
1 TTATATAAAGGCTACCACTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTC-AACAAATAAC
*
33245475 ATTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAGAAAAATTAC
65 TTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATAT--AA-AAAAATTAC
* *
33245540 ATGAGGTATAAAATAGCAGGGGTGCAACATGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA
127 ATGAGATATAAAATAGCAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTA
* * *
33245605 CACTCGCCCAAGCACACTTGACTACGGACTTCTAATGGGATCCGGTGCATTAGTGCTGGTATGAA
192 CTCTCGCCCAAGCACGCTT-ACTACGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATG-A
*
33245670 T-GCACCCGTCAATTCTTGTGGATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTC
255 TCGCACCCGTC-ATTCTTGTGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTC
*
33245734 GAATTTGAATTTAAATTCGTCCAAATAACGTTTCGAGTGATTTATTTCGTAAATAGCTAATTAGT
319 GAATTTGAATTTAAATTCGTCCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGT
* *
33245799 TAAACGATGAGATATAAAAAAAATTACATGAGATATAAAAAAGGAGGAGTGCAACACGAGGACTT
384 TAAACGATGAGATATAAAAAAAATTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTT
* * * *
33245864 CCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTACCGGTAGAGTTCTAATGG
449 CC-AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGG
* * * * * *
33245929 GATTCGGTGCATTTGGGCTGATATGATCGCACTCGTCAATTGTTGCGCATTCTATTTATATAAAG
513 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAG
* **
33245994 GCTACCCCTTATCGCACTTGCGCCTCAAATTTGAATTTAAATTCGAAAAAATAACATTTCGAGTG
578 GCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAACATTTCGAGTG
*
33246059 ATTTATATCATAAATAACTAATTAGTTAAACGATAAGATATATAAAAAAAATTACATGAGATATA
643 ATTTATTTC-TAAATAACTAATTAGTTAAACGAT-AGATATATAAAAAAAATTACATGAGATAT-
* * **
33246124 AAAATAGGAGGGGGTGCAACAGGAGGACTTCCCAGGAGGTTACCCATCCTTGTACTACACTCGCC
705 AAAATAGGA-GGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCAAGTACTACACTCGCC
* * * * * *
33246189 CAAGCACACTTAACTGCGGAGTTTTGATGGGATCC-GATGTATTAGTGCTGGTATGACCCCACCC
769 CAAGCACACTTAACTGCAGAGTTCTGATGGGATCCTG-TGCAGTAGTGCTGGTACGACCCCAACC
33246253 GTCT-ATTCTTGAGCATTCTAT
833 GT-TAATTCTTGAGCATTCTAT
* * * *
33246274 TTATATAAAGGCTACCACTTATCACACTTGCACCTCGAATTTGAATTTACATTCAAACAATTAAC
1 TTATATAAAGGCTACCACTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTC-AACAAATAAC
* *
33246339 TTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACAATGTGATAT-AAAAAATTACATG
65 TTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATTACATG
* * * * ***
33246403 AGATATAAAATAGGAGGGGTGCAACACGAGAATTTCCTAGGAGGTTCACATTTTCCT-GTACTAC
130 AGATATAAAATAGCAGGGGTGCAACACGAGGACTTCCCAGGAGG-TCAC-CCATCCTAGTACTAC
* * *
33246467 TCTCAAACCC-A-CACGCTTA-AACTGTGAGTTCTAATGGGATCCGGAGCATTAGTGCTGGTATG
193 TCTC--GCCCAAGCACGCTTACTAC-G-GAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATG
* ** *
33246529 ATCGCAACCGTCATTCTTGCACATTCTATTTATATAAAGGCTACCCCTTATTGCACTTGCGCCTC
254 ATCGCACCCGTCATTCTTGTGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTC
* * * * *
33246594 GAATTTGAATTTAAATTC-TACGAAATAACATTTCGAGTAATTTGTTTTGTAAATAACTAATTAG
319 GAATTTGAATTTAAATTCGT-CCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAG
*
33246658 TTAAACGATGAGATATAAAAAAAACTACATGAGATA-AAAACTAGGAGGGGTGCAACACGAGGAC
383 TTAAACGATGAGATATAAAAAAAATTACATGAGATATAAAA-TAGGAGGGGTGCAACACGAGGAC
* * * *
33246722 TTCCCAGGAGGTCACCCAGCCCAGTACTACTCTCGCCCAAGCACGCTTAATTGCAGAGATCTGAT
447 TT-CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGAT
* * * ** **
33246787 GGGATCCGGTGCAGTAGTGCTGGTATGATCGCACGCGTTAATTCTTGCTTATTCTATTTGCATAA
511 GGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAA
* *
33246852 AGGCTACCCCTTATCGCAATTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAACGTTTCGAG
576 AGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAACATTTCGAG
*
33246917 TGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATA-AAAGAAAAATTACATGAGGT
641 TGATTTATTTC-TAAATAACTAATTAGTTAAACGAT-AGATATATAAA-AAAAATTACATGAGAT
* *
33246981 ATAAAATAGCAGGGGTGCAACATGAGGACTTCCCAGGAGGTCACCCATCC
703 ATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCC
33247031 GGGGAAGTCC
Statistics
Matches: 1435, Mismatches: 158, Indels: 54
0.87 0.10 0.03
Matches are distributed among these distances:
856 102 0.07
857 6 0.00
858 206 0.14
859 154 0.11
860 636 0.44
861 66 0.05
862 32 0.02
863 13 0.01
864 219 0.15
865 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (853 bp):
TTATATAAAGGCTACCACTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCAACAAATAACT
TTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGATGAGATATAAAAAAATTACATGA
GATATAAAATAGCAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT
CGCCCAAGCACGCTTACTACGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATGATCGCAC
CCGTCATTCTTGTGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTG
AATTTAAATTCGTCCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGA
TGAGATATAAAAAAAATTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCAGGAG
GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGT
GCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGGCTACCCC
TTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGACCAAATAACATTTCGAGTGATTTATTT
CTAAATAACTAATTAGTTAAACGATAGATATATAAAAAAAATTACATGAGATATAAAATAGGAGG
GGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCAAGTACTACACTCGCCCAAGCACACTTA
ACTGCAGAGTTCTGATGGGATCCTGTGCAGTAGTGCTGGTACGACCCCAACCGTTAATTCTTGAG
CATTCTAT
Found at i:33249428 original size:296 final size:292
Alignment explanation
Indices: 33247059--33249639 Score: 1090
Period size: 296 Copynumber: 8.7 Consensus size: 292
33247049 ACCCCGTTGC
** * *
33247059 ATTTTATACCTCATGTAATTTTTCTTTTATATCTCATCGTTTAACTAATTAGTTATTTACGAAAT
1 ATTTTATAAATCATGTAA-ATTT-TTTTATATCTCATCGTTCAACTAATTAGTTATTT--GAAAT
* * *
33247124 AAATCACTCGAAACG-TTATTT-GGTCGAATTTTAAATTTCAAAAATTCCGAGGCGCAATTGCGA
62 AAATCACTCGAAA-GTTTATTTGGGTCGAA-TTTGAA-TTC--AAATT-CGAGGCGCCAGTGCGA
** ** * * *
33247187 TAAGGGGTAGCCTTTATGCAAATAGAATAAGCAAGAATTAACGCGTGCGATCATACCAGCACTAC
121 TAA-GGGTAGCCTTTATATAAATAGAATGCGCAAGAATTGACGGGTGCGATCATACCA-CACTAA
* * * * *
33247252 TGCA--CCGGATCCCATCAGATCTCTGCAAT--TAAGCG-TGCTTGG-GCGAG-AGTAG-T-ACT
184 TGCACTCCGGATCCCATCAGAACTCCGC-ATGCTAAGAGTTGATTGGTGAGAGCAGTAGTTAACT
** * *
33247308 -GGGCTGGGTGACCTCCTGGGAA-GT-CCTCGTGTTGC-ACCCCTCCT
248 AGGAATGGGTGACCT--TGTGAAGGTCCCTCG-GTTGCAACCCCGCCT
** ** * *
33247352 AGTTTT-TATCTCATGTAGTTTTTTTTATATCTCATCGTTTAACTAATTAGTTATTT-ACACACA
1 A-TTTTATAAATCATGTAAATTTTTTTATATCTCATCGTTCAACTAATTAGTTATTTGA-A-ATA
* * * * * *
33247415 AATTTACTCGAAAGTTTATTT-CGTATGTAATTT-AATTACAAATTCGAAGCGCAAAGTGGCAAT
63 AA-TCACTCGAAAGTTTATTTGGGT-CG-AATTTGAATT-CAAATTCGAGGCGC-CAGT-GCGAT
*
33247478 AAGGGTTAAGCCTTTATATAAATTAG-ATG-GCAAGACATTGACGGTCTGCCGATCAATACCAGC
122 AAGGG-T-AGCCTTTATATAAA-TAGAATGCGCAAGA-ATTGACGG-GTG-CGATC-ATACCA-C
* * * * * *
33247541 ACTAATG--CTCCGGATCCCATTAGAACT-CACA-GTTAAGCG-TGCTTGG-GTGAG-AGTAG-T
179 ACTAATGCACTCCGGATCCCATCAGAACTCCGCATGCTAAGAGTTGATTGGTGAGAGCAGTAGTT
* * *
33247598 -ACTAGGAAAT--GTGACCTCCTAG-GAA-AT-TCTCGTGTTGC-ACCCCTCCT
244 AACTAGG-AATGGGTGACCT--T-GTGAAGGTCCCTCG-GTTGCAACCCCGCCT
** * * *
33247645 ATTTTATATCTCATGT-AA-TTTTTTATATCACATTGTTTAACTAATTAGTTATTTACGAAATAA
1 ATTTTATAAATCATGTAAATTTTTTTATATCTCATCGTTCAACTAATTAGTTATTT--GAAATAA
* * * * * * * *
33247708 ATCACTCGAAAAG-TTAATT-GTTTGAATGTAAATTCAAATTCGAGGTGCAAGTGTGATAAGTGG
64 ATCACTCG-AAAGTTTATTTGGGTCGAATTTGAATTCAAATTCGAGGCGCCAGTGCGATAAG-GG
* * * * *
33247771 TAGCCTTTATATAAATAGAATGCTCTAAG-ACTAACGGGTG-GGTCAATACCAGCACTAATACA-
127 TAGCCTTTATATAAATAGAATGCGC-AAGAATTGACGGGTGCGATC-ATACCA-CACTAATGCAC
* * * * * * *
33247833 T-CGGATCCCATCAAAACTCCGCA-GTTAAGTG-TGCTTGG-GCGAG-TGTAG-T-ACAAGG-AT
189 TCCGGATCCCATCAGAACTCCGCATGCTAAGAGTTGATTGGTGAGAGCAGTAGTTAACTAGGAAT
* * * * *
33247890 GGGTAACCTCCTGGGAA-GT-CCTCCTGTTGCACCCCCTCCT
254 GGGTGACCT--TGTGAAGGTCCCT-CGGTTGCAACCCCGCCT
** * * * *
33247930 ATTTTTATATCTCATGTAATTTTTTTTATATATCTTATCGTTTAACTAATTAGTTATTTATGATA
1 A-TTTTATAAATCATGTAA-ATTTTTT-TATATCTCATCGTTCAACTAATTAGTTA-TT-TGAAA
** * * * * *
33247995 TAAATCACTCGAAA-TGTTATTT-TTTCGAATTTAAATTCAAATTTGTGGCGCAAGTACGATAAG
61 TAAATCACTCGAAAGT-TTATTTGGGTCGAATTTGAATTCAAATTCGAGGCGCCAGTGCGATAAG
* * * * *
33248058 GGTAGCCTTTATATAAATAGAATGCGCAACAATTGACGAGTGCGATCATATCAGCCCAAATGCA-
125 GGTAGCCTTTATATAAATAGAATGCGCAAGAATTGACGGGTGCGATCATACCA-CACTAATGCAC
* * ** * * * *
33248122 -CCGAATCCCATTAGAACTCTAC-CGGTAAGCG-TGCATTGCG-GCGAAG-AGGTAAG-T-ACTA
189 TCCGGATCCCATCAGAACTCCGCATGCTAAGAGTTG-ATTG-GTGAG-AGCA-GT-AGTTAACTA
* * * * * *
33248180 GGTATTGGTGACCTCCAG-GAATGT-CCTCGTGTTGC-ACTCCTCCT
249 GGAATGGGTGACCT--TGTGAAGGTCCCTCG-GTTGCAACCCCGCCT
* * * * *
33248224 -TTTTATAATCTCATTGTAATTTTTTTTATAATTCTCATCGTTTAAACTAATTAGCTATTACGAA
1 ATTTTATAA-ATCA-TGTAAATTTTTTTAT-A-TCTCATCG-TTCAACTAATTAGTTATT-TGAA
* * * *
33248288 TTAAATCACTCGAAAAACG-TTATTT-GGACGAATTTAAATTCAAATTCGAGGCGCAAGTGCGAT
60 ATAAATCACTCG--AAA-GTTTATTTGGGTCGAATTTGAATTCAAATTCGAGGCGCCAGTGCGAT
* * * *
33248351 AGGGGGTAGCCTTTAGATAAATAG-ATCCACAAGAA-TGACGGGTTGC-ATTTTCATACCAGCAC
122 A-AGGGTAGCCTTTATATAAATAGAATGCGCAAGAATTGACGGG-TGCGA---TCATACCA-CAC
* * * *
33248413 TTAATGCA--CCGTGATCCCAT-AGAAGTCCG-TTAG-TCA-AGTGTGCTTGG-GCAGA-C-GT-
181 -TAATGCACTCCG-GATCCCATCAGAACTCCGCAT-GCTAAGAGT-TGATTGGTG-AGAGCAGTA
* * **
33248468 GTTAGTACTTAGGATTGGGTGACCTCCTG-GAA-GT-CCTCATGTTGC-ACCCCTTC-
241 GTTA--AC-TAGGAATGGGTGACCT--TGTGAAGGTCCCTC-GGTTGCAACCCCGCCT
** * *
33248521 A-TTTATACCTCATTGTAATTTTTACTTTTATATCTCATTCGTTTTAACTAATTAGTTATTTTAC
1 ATTTTATAAATCA-TGTAA-ATTT--TTTTATATCTCA-TCG-TTCAACTAATTAGTTA-TTT--
* * * *
33248585 GAAATTAAAATCACTCGAAATTGTTA-TTGGGTTCGAATTTAAATTCAAAATTCGTGTTGGCGCA
57 GAAA-T-AAATCACTCGAAAGT-TTATTTGGG-TCGAATTTGAATTC-AAATTC--G-AGGCGCC
* * * * * * *
33248649 ATTGCAATAAGGGTAAGCCTTTATACAAATAGAATTGCGCAAGAATTAACAGTTGCGGATACGTA
114 AGTGCGATAAGGGT-AGCCTTTATATAAATAGAA-TGCGCAAGAATTGACGGGTGC-GAT-CATA
* * * * * * * * *
33248714 -CAGCACATACTCGCAC-ACAGATCCCATCAG-ACTCTGCAAGTTAA-AGCGTG-CTGGGGCA-A
175 CCA-CAC-TAAT-GCACTCCGGATCCCATCAGAACTCCGCATGCTAAGAG-TTGATTGGTG-AGA
* * * * * *
33248773 GAAGTAG-T-ACTTGG-ATGGTTGACCTACCTGGGAAGGT-CCTCGTGTTGC-ACTCCTCCT
235 GCAGTAGTTAACTAGGAATGGGTGACCT---TGTGAAGGTCCCTCG-GTTGCAACCCCGCCT
* *
33248830 ATTTAATATACATATCATGT-AATTTTTTTATATC-CATCGTTTAAACTAATTAGGTTATGTAGA
1 ATTT--TATA-A-ATCATGTAAATTTTTTTATATCTCATCG-TTCAACTAATTA-GTTAT-TTGA
* *
33248893 AATAAATCACTCGAAAGTTTATTTGAGTCGAATTTGAATTTCAAATTCGAGCGCGCCAGTTCGAG
59 AATAAATCACTCGAAAGTTTATTTGGGTCGAATTTGAA-TTCAAATTCGAG-GCGCCAGTGCGA-
* * * *
33248958 TAAGGGGTAGCCTTTATAT-AACAGAATGCGCAAGAATTAACGGGTGCGTTAATACCAGCACTAA
121 TAA-GGGTAGCCTTTATATAAATAGAATGCGCAAGAATTGACGGGTGCGATCATACCA-CACTAA
* * *
33249022 TG-ACT-GGGATCCCATCAGAACTCTGCATGTTAAGAGTTGATTGGTGAGAGCAGTAGTTAACTA
184 TGCACTCCGGATCCCATCAGAACTCCGCATGCTAAGAGTTGATTGGTGAGAGCAGTAGTTAACTA
* *
33249085 GGAATGGGTGACCTTTTGAAGGTCCCTCGGTTGCAACCCCTCCT
249 GGAATGGGTGACCTTGTGAAGGTCCCTCGGTTGCAACCCCGCCT
* ** *
33249129 ATTTTATAAATC-TGTAAAATTTTTTTATATCTCA-CATTTTTACTAATTATTTATTTTTGAAAT
1 ATTTTATAAATCATGT-AAATTTTTTTATATCTCATC-GTTCAACTAATTAGTTA--TTTGAAAT
* *
33249192 AAATCACTACTAAAGTTTATTTGGGTCGAATTTGAACTCAAATTCGAGGCGCCAGTGCGATAAGG
62 AAATCACT-CGAAAGTTTATTTGGGTCGAATTTGAATTCAAATTCGAGGCGCCAGTGCGATAAGG
* * * *
33249257 GTA-CCTTTACATAAATAGAATGACACAAGAATTGATGGGTGCGATCATACGCATACTAATAGCA
126 GTAGCCTTTATATAAATAGAATG-CGCAAGAATTGACGGGTGCGATCATAC-CACACTAAT-GCA
* *
33249321 CTCCGGATCCCATCATGAAACTCCGCA-GCT-A-CG-TGCTTGG-GACGATG-AGTAG-T-ACTA
188 CTCCGGATCCCATCA-G-AACTCCGCATGCTAAGAGTTGATTGGTGA-GA-GCAGTAGTTAACTA
*
33249378 TG-ATGGGTGACCGTCCTGTGAA-GT-CCTCGTTGTTGC-ACTACCCGCCT
249 GGAATGGGTGACC-T--TGTGAAGGTCCCTCG--GTTGCAAC--CCCGCCT
** *
33249425 ATTTTATATCTCATGTAATTTTTTTTATATCTCATCGTTCAACTAATTAGTTATTT-ACAATAAA
1 ATTTTATAAATCATGTAAATTTTTTTATATCTCATCGTTCAACTAATTAGTTATTTGA-AATAAA
** * * * *
33249489 TCACTTCGAAACATT-TTTAGTTCGAATTTAAATTCAAATTCGAAGGCGGCCTGTGCGAATAAGT
65 TCAC-TCGAAAGTTTATTTGGGTCGAATTTGAATTCAAATTCG-AGGC-GCCAGTGCG-ATAAG-
*
33249553 GTGTAGCCTTTATATATGAATAGAATGCGGC-AGAAATTGACGGGTGCAATCAATACCACACTAA
125 G-GTAGCCTTTATATA--AATAGAATGC-GCAAG-AATTGACGGGTGCGATC-ATACCACACTAA
33249617 TGCA-TCCGGATCCCATCAGAACT
184 TGCACTCCGGATCCCATCAGAACT
33249640 GCTGAGTATT
Statistics
Matches: 1845, Mismatches: 250, Indels: 382
0.74 0.10 0.15
Matches are distributed among these distances:
282 2 0.00
283 34 0.02
284 52 0.03
285 15 0.01
286 38 0.02
287 9 0.00
288 19 0.01
289 107 0.06
290 109 0.06
291 126 0.07
292 57 0.03
293 152 0.08
294 150 0.08
295 97 0.05
296 185 0.10
297 105 0.06
298 89 0.05
299 105 0.06
300 49 0.03
301 64 0.03
302 40 0.02
303 29 0.02
304 21 0.01
305 15 0.01
306 39 0.02
307 32 0.02
308 58 0.03
309 26 0.01
310 6 0.00
311 4 0.00
312 5 0.00
313 3 0.00
314 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (292 bp):
ATTTTATAAATCATGTAAATTTTTTTATATCTCATCGTTCAACTAATTAGTTATTTGAAATAAAT
CACTCGAAAGTTTATTTGGGTCGAATTTGAATTCAAATTCGAGGCGCCAGTGCGATAAGGGTAGC
CTTTATATAAATAGAATGCGCAAGAATTGACGGGTGCGATCATACCACACTAATGCACTCCGGAT
CCCATCAGAACTCCGCATGCTAAGAGTTGATTGGTGAGAGCAGTAGTTAACTAGGAATGGGTGAC
CTTGTGAAGGTCCCTCGGTTGCAACCCCGCCT
Found at i:33250196 original size:286 final size:286
Alignment explanation
Indices: 33249685--33250733 Score: 1069
Period size: 286 Copynumber: 3.7 Consensus size: 286
33249675 GTCCTCATTT
** * ** *
33249685 TAAATCACTCGAAATTTTATTTGGTCAAATTTGAATTCAAATTCAAGGTGCGAA-TACGATAAGG
1 TAAATCACTCGAAACGTTATTTGGTCAAATTTGAATTCAAATTCGAGGCAC-AAGTGCGATAAGG
* * * **
33249749 GGTAGCCTTTATATAAATAGAAT-CGCTAGAATTTG-CGGGTGCGATCATACCAGTGCTAATGCA
65 GGTAGCCTTTATATAAATAGAATGCGCTAAAAATTGACGGGTGCAATCATACCAGCACTAATGCA
* * * * * * *
33249812 CCAGATCCCATTAGAACTCTGTAGTTAAGCGTACTTGGGCGAGAGTAGTATTAGGATGGGTGACC
130 CCGGATCCCATCAGAACTCCGTAGTTAAGCATGCCTGGGCGAGAGTAGTACTAGGATGGGTGACC
* * * *
33249877 TCCTGGGAAGTCCTCGTGTTGCACCTCTCCTATTTTATATCTCATGTAATTTTTTTTATACCTTA
195 TCCTAGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATCTCATATAATTTTTTTTATAAC-TA
* *
33249942 TCATTTAACTAGTTATTTATTTACGAAA
259 TAATTTAACTAATTATTTATTTACGAAA
*
33249970 TAAATCACTCGAAACGTTATTTGGTCAAATTTGAATTCAAATTCGAGGCACAAGTGCGATAAGTG
1 TAAATCACTCGAAACGTTATTTGGTCAAATTTGAATTCAAATTCGAGGCACAAGTGCGATAAGGG
** * * *
33250035 GTATTCTTTATATAAATAGAATGCG-TAAAAATTGACAGGTGCAATCATACCAACATTAATGCAC
66 GTAGCCTTTATATAAATAGAATGCGCTAAAAATTGACGGGTGCAATCATACCAGCACTAATGCAC
** ** * * *
33250099 CGGATCCCATCAGAACTTTGTAGTTAAGGGTGCTTGGGTGAGAGTAGTACTAGGATAGGTGACCT
131 CGGATCCCATCAGAACTCCGTAGTTAAGCATGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCT
* * * *
33250164 CCTAGGAAGTCCTTGTGTTGCACCCCTCCTATTTTTTATCTCATCTAATTTTTTTTATATCTCAT
196 CCTAGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATCTCATATAATTTTTTTTATAACT-AT
** * *
33250229 TGTTTAAGTAATTAGTTATTTACGAAA
260 AATTTAACTAATTATTTATTTACGAAA
* * * * ** * *
33250256 TAAATCACTTGAAATGTTAGTTGGTCGAATTTGAATTCAAATTCGAGGTGCAAGTGAGGTAAGGG
1 TAAATCACTCGAAACGTTATTTGGTCAAATTTGAATTCAAATTCGAGGCACAAGTGCGATAAGGG
* * * * ** **
33250321 GTAGCCTTTATATAAATAGATTGCGCT-AGAATTGACGGGTGCGATCATACTAGTGCTAATGCTT
66 GTAGCCTTTATATAAATAGAATGCGCTAAAAATTGACGGGTGCAATCATACCAGCACTAATGCAC
* * * * * *
33250385 CGGATCCGATCAGAACTCCGCAGTTAAGCATGCCTAGGTGAGAGTAGTTCTGGGATGGGTGACCT
131 CGGATCCCATCAGAACTCCGTAGTTAAGCATGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCT
* * * *
33250450 --TAGAAAGTCCTCGTGTTGCACCCCTCCCATTTTAT-GCTTCATATAA-TTTTTTTA-AAC-AA
196 CCTAGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATC-TCATATAATTTTTTTTATAACTAT
*
33250509 AATTTAACTAATTACTTATTAGCGATTTTCGAAA
260 AATTTAACTAATTA--T-TT----ATTTACGAAA
** * * * * * **
33250543 TAAATCACTTAAAACATTATTTGGTCGAATTTGAATTCAAATTCGAAGCAGAAATTTGATAAGGG
1 TAAATCACTCGAAACGTTATTTGGTCAAATTTGAATTCAAATTCGAGGCACAAGTGCGATAAGGG
* * * ** * * *
33250608 GTGGCCGTTATATAAATAGATTGCG-TAGGAGTTGACGGGTGCAATCATACCAGCAGTAGTGCAC
66 GTAGCCTTTATATAAATAGAATGCGCTAAAAATTGACGGGTGCAATCATACCAGCACTAATGCAC
* * * * *
33250672 CGGATCCAATCAAAACTCCCTAGATAAGCATGCCTGGGCGAGAGTAGTACTAGGAAGGGTGA
131 CGGATCCCATCAGAACTCCGTAGTTAAGCATGCCTGGGCGAGAGTAGTACTAGGATGGGTGA
33250734 ATTATTTTTC
Statistics
Matches: 634, Mismatches: 116, Indels: 26
0.82 0.15 0.03
Matches are distributed among these distances:
280 12 0.02
282 2 0.00
283 11 0.02
284 40 0.06
285 83 0.13
286 321 0.51
287 165 0.26
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (286 bp):
TAAATCACTCGAAACGTTATTTGGTCAAATTTGAATTCAAATTCGAGGCACAAGTGCGATAAGGG
GTAGCCTTTATATAAATAGAATGCGCTAAAAATTGACGGGTGCAATCATACCAGCACTAATGCAC
CGGATCCCATCAGAACTCCGTAGTTAAGCATGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCT
CCTAGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATCTCATATAATTTTTTTTATAACTATA
ATTTAACTAATTATTTATTTACGAAA
Found at i:33251402 original size:279 final size:285
Alignment explanation
Indices: 33250745--33251699 Score: 762
Period size: 279 Copynumber: 3.4 Consensus size: 285
33250735 TTATTTTTCG
* * * ** * *
33250745 TTAAACATCGCTTAACTAATTAGTTATTTGTGTTTTACGAAATATATCACTTGAAACATTGTTTT
1 TTAAACAT-GTTTAAGTAATTAGTTATTT-TGTTTTACGAAATAAATCACTTGAAATGTTATTTA
* * * * * * * * *
33250810 GTCAAATTTGTATTCAAATTCGTA-GCGCAAGTGCAATAAGGGGAAGCCTTCATATAAATAGAAT
64 GTCGAATTTGAATTCAAATACG-AGGCGCAAGTGCGATAA-GGGTAGCCCTAATA-AAAAATAAT
* ** * ** * *** * * * * *
33250874 GTGC-ACGAGTTGACGGGTGCGATTATACTAGTGCTAATGCTCCAGATCCC-TCCAGAACTACGC
126 CTGCGAAAAATTGACGGGTATGATCATACCCTTACTAATGCACCGGATCCCAT-CAGAACTCCAC
* * * * * * * *
33250937 AGTTAAGCATGCTTGGG-TGAGACTGGTACTAGGATGGGTGACCTCCTAGGAAGTCCTGGTGTTG
190 A-TTAAGCATGCTCGGGCAGAGA-TAGTACAAGGATGGGTGAACTCCTGGGAAGTCATCGTGTTG
*
33251001 CGCCCCTCCTATTTTATATTTCATGT-AATTTTT
253 CACCCCTCC-ATTTTATATTTCATGTAAATTTTT
33251034 TTCAAACATCGTTTAAGTAATTAGTTA------TTTACGAAATAAATCACTTG-AATCGTTATTT
1 TT-AAACAT-GTTTAAGTAATTAGTTATTTTGTTTTACGAAATAAATCACTTGAAAT-GTTATTT
* * * * * *
33251092 GGTCGAATTTCAATTCAAATTCGAGGCGCAAGTGCGTTAAAGAGG-A-CCCTAAT-ATAAGTAGA
63 AGTCGAATTTGAATTCAAATACGAGGCGCAAGTGCGAT-AAG-GGTAGCCCTAATAAAAAATA-A
*
33251154 T-TGCGTAAAAATTGACGGGTATGATCATA-CC-TACAGTATTGCACCGGATCCCATCAGAACT-
125 TCTGCG-AAAAATTGACGGGTATGATCATACCCTTAC--TAATGCACCGGATCCCATCAGAACTC
* *
33251215 CACAGTTAAGCGTGCTC-GGC-GAGAGTAGTACAAGGAT-GGT-AACTCTTGGGAA-TCATCGTG
187 CACA-TTAAGCATGCTCGGGCAGAGA-TAGTACAAGGATGGGTGAACTCCTGGGAAGTCATCGTG
*
33251275 TTGCA-CCC-CCATTTTATATTTCGTGTAAATTTTT
250 TTGCACCCCTCCATTTTATATTTCATGTAAATTTTT
* * *
33251309 TTAAACATAGTTTAAGTAATTAGTTATTTGTGTTTTAC-AAAGAAATC-CTCGAAATGTTATTTC
1 TTAAACAT-GTTTAAGTAATTAGTTATTT-TGTTTTACGAAATAAATCACTTGAAATGTTATTTA
* * * * * *
33251372 GTCGAATTTGAATTCAAATACGATGCGCAAGTGTGATGAGGGTAGCCTTTATAAAAAATATTCTG
64 GTCGAATTTGAATTCAAATACGAGGCGCAAGTGCGATAAGGGTAGCCCTAATAAAAAATAATCTG
** * * * *
33251437 CGATCAGTTGACGGGTGTGATCATACCCTTACTAATGCACCGGATCCCATCAGTACTCCGCATTA
129 CGAAAAATTGACGGGTATGATCATACCCTTACTAATGCACCGGATCCCATCAGAACTCCACATTA
* * ** * * *
33251502 AGCATGCTTGGGCAGGGATAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCCC
194 AGCATGCTCGGGCAGAGATAGTACAAGGATGGGTGAACTCCTGGGAAGTCATCGTGTTGCACCCC
* *
33251567 TCCATTTTATGTTTCATGTAATTTTTTCTTT
259 TCCATTTTATATTTCATGTAA---ATT-TTT
*
33251598 TTAAACATGTTTAACTAATTAGTTATTTTCGTTTTACGAAATAAATCACTTGAAATGTTATTTAG
1 TTAAACATGTTTAAGTAATTAGTTATTTT-GTTTTACGAAATAAATCACTTGAAATGTTATTTAG
* * *
33251663 TCGAA-TTGAATTCAAATTCAAGGTGCAAGTGCGATAA
65 TCGAATTTGAATTCAAATACGAGGCGCAAGTGCGATAA
33251700 AGTCTAGCCT
Statistics
Matches: 537, Mismatches: 87, Indels: 84
0.76 0.12 0.12
Matches are distributed among these distances:
274 38 0.07
275 11 0.02
276 3 0.01
277 12 0.02
278 12 0.02
279 103 0.19
280 62 0.12
281 30 0.06
282 55 0.10
283 68 0.13
284 7 0.01
285 18 0.03
287 1 0.00
288 28 0.05
289 47 0.09
290 42 0.08
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (285 bp):
TTAAACATGTTTAAGTAATTAGTTATTTTGTTTTACGAAATAAATCACTTGAAATGTTATTTAGT
CGAATTTGAATTCAAATACGAGGCGCAAGTGCGATAAGGGTAGCCCTAATAAAAAATAATCTGCG
AAAAATTGACGGGTATGATCATACCCTTACTAATGCACCGGATCCCATCAGAACTCCACATTAAG
CATGCTCGGGCAGAGATAGTACAAGGATGGGTGAACTCCTGGGAAGTCATCGTGTTGCACCCCTC
CATTTTATATTTCATGTAAATTTTT
Found at i:33252056 original size:551 final size:550
Alignment explanation
Indices: 33251320--33252311 Score: 1261
Period size: 551 Copynumber: 1.8 Consensus size: 550
33251310 TAAACATAGT
* * *
33251320 TTAAGTAATTAGTTATTTGTGTTTTACAAAGAAATCCTCGAAATGTTATTTCGTCGAATTTGAAT
1 TTAACTAATTAGTTATTTGTGTTTTACAAACAAATCCTCGAAATGTTATTTCGTCAAATTTGAAT
* * * *
33251385 TCAAATACGATGCGCAAGTGTGATGAGGGTAGCCTTTATAAAAAATATTCTGCGATCAGTTGACG
66 TCAAATACGATGCGCAAGTGCGATAAGGGTAGCCTTTATAAAAAATAATCTGCGAACAGTTGACG
** *** * *
33251450 GGTGTGATCATACCCTTACTAATGCACCGGATCCCATCAGTACTCCGCATTAAGCATGCTTGGGC
131 GGTGCAATCATACCAGCACAAATGCACCGGATCCCATCAGAACTCCGCATTAAGCATGCTTGGGC
* * * * ** *
33251515 -AGGGATAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCCCT-CCATTTTATG
196 GAGAG-TAGTACT-AGATGGGTGA-CTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATAATATA
* * *
33251578 TTTCATGTAATTTTTTCTTTTTAAACAT-GTTTAACTAATTAGTTATTTTCGTTTTACGAAATAA
258 TTTCATGTAATTTTTT-TCTTTAAACATCGTTTAACTAATTAGTTATTTACATTTTACGAAATAA
* * * ** *
33251642 ATCA-CTTGAAATGTTATTTAGTCGAA-TTGAATTCAAATTCAAGGTGCAAGTGCGATAAAGTCT
322 AT-ATCTTGAAATGTTATTTAGTCAAATTTAAATTCAAATTCAAGGCGCAAGACCGATAAAGGCT
* * * * *
33251705 AGCCTTTATATAAACAGAATGC-GCAGAACTGATGTGTGCGATCATACTAGCACTAATGCATCGG
386 AGCCTATATATAAACAGAATGCAGAAGAACTGATGGGTCCGATCATACCAGCACTAATGCATCGG
33251769 ATCCATCAGAATTTGCAATTAAGAGTGCTTGGGCGAGAGTTGTCTTTGGTGGTTGACCTCTGGAA
451 ATCCATCAGAATTTGCAATTAAGAGTGCTTGGGCGAGAGTTGTCTTTGGTGGTTGACCTCTGGAA
33251834 GTCCTCGTGTTGAACCCCTCCAATTTTATATTTCA
516 GTCCTCGTGTTGAACCCCTCCAATTTTATATTTCA
* * *
33251869 TTAACTAATTAGTTATTTGTG-TTTACGAAACAAATCATTTGAAATGTTATTATTGGTCAAATTT
1 TTAACTAATTAGTTATTTGTGTTTTAC-AAACAAATC-CTCGAAATGTTA-T-TTCGTCAAATTT
* * * * * *
33251933 GAATTCAAATTCTA-GTTGC-AGTGCGATAAGGGTAGCCTTTA-CAGAAATAGAT-TGCGTAAGA
62 GAATTCAAATACGATG-CGCAAGTGCGATAAGGGTAGCCTTTATAAAAAATA-ATCTGCG-AACA
* * *
33251994 GTTGACGGGTGCAATCATACCAGCACAAATGCACCTGATCCCATTAGAACT-CGTAGTTAAGCAT
124 GTTGACGGGTGCAATCATACCAGCACAAATGCACCGGATCCCATCAGAACTCCGCA-TTAAGCAT
* * *
33252058 GCTTGGGCGAGAGTAGTACTAGATGGGTGACTCTTAGGAAGTGCTCGTGTTGCACCCTTCCCATA
188 GCTTGGGCGAGAGTAGTACTAGATGGGTGACTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATA
33252123 ATATATTTCATGTAATTTTTTTCTTTAAACATCGTTTAACTAATTAGTTATTTACATTTTACGAA
253 ATATATTTCATGTAATTTTTTTCTTTAAACATCGTTTAACTAATTAGTTATTTACATTTTACGAA
* * *
33252188 ATAAATATCTTGAAATTTTATTTGGTCAAATTTAAATTCAAATTCAAGGCGCAAGACCGATAAGG
318 ATAAATATCTTGAAATGTTATTTAGTCAAATTTAAATTCAAATTCAAGGCGCAAGACCGATAAAG
* * * * *
33252253 GGTAGCCTATATATACATAGAATGCATAAGAACTGATGGGTCCGATTATACCAGCACTA
383 GCTAGCCTATATATAAACAGAATGCAGAAGAACTGATGGGTCCGATCATACCAGCACTA
33252312 TTGTACCGAA
Statistics
Matches: 371, Mismatches: 58, Indels: 25
0.82 0.13 0.06
Matches are distributed among these distances:
548 5 0.01
549 63 0.17
550 110 0.30
551 139 0.37
552 54 0.15
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (550 bp):
TTAACTAATTAGTTATTTGTGTTTTACAAACAAATCCTCGAAATGTTATTTCGTCAAATTTGAAT
TCAAATACGATGCGCAAGTGCGATAAGGGTAGCCTTTATAAAAAATAATCTGCGAACAGTTGACG
GGTGCAATCATACCAGCACAAATGCACCGGATCCCATCAGAACTCCGCATTAAGCATGCTTGGGC
GAGAGTAGTACTAGATGGGTGACTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATAATATATTT
CATGTAATTTTTTTCTTTAAACATCGTTTAACTAATTAGTTATTTACATTTTACGAAATAAATAT
CTTGAAATGTTATTTAGTCAAATTTAAATTCAAATTCAAGGCGCAAGACCGATAAAGGCTAGCCT
ATATATAAACAGAATGCAGAAGAACTGATGGGTCCGATCATACCAGCACTAATGCATCGGATCCA
TCAGAATTTGCAATTAAGAGTGCTTGGGCGAGAGTTGTCTTTGGTGGTTGACCTCTGGAAGTCCT
CGTGTTGAACCCCTCCAATTTTATATTTCA
Found at i:33252444 original size:117 final size:117
Alignment explanation
Indices: 33252245--33252471 Score: 298
Period size: 117 Copynumber: 1.9 Consensus size: 117
33252235 GGCGCAAGAC
* * * * * *
33252245 CGATAAGGGGTAGCCTATATATACATAGAATGCATAAGAACTGATGGGTCCGATTATACCAGCAC
1 CGATAAGGGGTAGCCTATATATAAACAGAATGCACAAGAACTGATGGGTCAGATCATACCAGAAC
* * *
33252310 TATTGTACCGAATCCCATCTGAACTGCC-CAGTTAAGAGTGCTTGGGCAAGTG
66 TAATGCACCGAATCCCATCAGAACT-CCACAGTTAAGAGTGCTTGGGCAAGTG
* * *
33252362 CGATAAGGGGTAGCCTTTATATAAACAGAATGCACAAGAACTGATGTGTTAGATCATACCA-AAG
1 CGATAAGGGGTAGCCTATATATAAACAGAATGCACAAGAACTGATGGGTCAGATCATACCAGAA-
33252426 CTAATGCACC-AGATCCCATCAGAACTCCACAGTTAAGAGTGCTTGG
65 CTAATGCACCGA-ATCCCATCAGAACTCCACAGTTAAGAGTGCTTGG
33252472 CGAGAGTTGT
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
116 4 0.04
117 91 0.96
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (117 bp):
CGATAAGGGGTAGCCTATATATAAACAGAATGCACAAGAACTGATGGGTCAGATCATACCAGAAC
TAATGCACCGAATCCCATCAGAACTCCACAGTTAAGAGTGCTTGGGCAAGTG
Found at i:33253469 original size:546 final size:547
Alignment explanation
Indices: 33252474--33253555 Score: 1436
Period size: 540 Copynumber: 2.0 Consensus size: 547
33252464 GTGCTTGGCG
* * *
33252474 AGAGTTGTACTATGATGGGTGACCTCCTGGGAAATCCCTCGTGTTGCACCCCTCCCATTTTATAT
1 AGAGTTGTACTAGGATGGGTAACCTCCTAGGAAATCCCTCGTGTTGCACCCCTCCCATTTTATAT
* *
33252539 TTCATGTAAATTTTTTATATAGTTTAACTAATTATCTATTTGCGTTTTACAAATAAATCACTTGA
66 TTCATGTAAATTTTTTACATAGTTTAACTAATTATCTATTTGCGTTTTACAAATAAATCACTAGA
* * * * * *
33252604 AACGTTATTTGGTCGAATTTGAATTCAACTTCGAGGCGCAAGTTCAATAAGGGGTAGCCTTTATA
131 AACGTTATTTGGTCGAATTTGAATTCAAATTCAAAGCGCAAGTGCAATAACGGGTAGCCTTCATA
* * ** * * *
33252669 TAAATAGATTGTGCAAGAGTTGACAGGCGTGATCATACTAGCACTAATGGAATGGAGCCCATCAA
196 TAAATAAAATGCACAAGAGCTGACAGGCGCGATCATACTAGCACTAATGGAACGGAGCCCATCAA
33252734 AACTCCGTAGTTAAGCTTGCTCGGGCGAGAGTAATACTAGGATGGGTGACCTCTTAGGAGGTCCT
261 AACTCCGTAGTTAAGCTTGCTCGGGCGAGAGTAATACTAGGATGGGTGACCTCTTAGGAGGTCCT
*
33252799 CGTGTTGCACCCTCCCATTTTATGTTTCCTATAATTTTTTTCTTTAAACATCGATTAACTAATTA
326 CGTGTTGCACCCTCCCATTTTATGTTTCATATAATTTTTTTCTTTAAACATCGATTAACTAATTA
* * * *
33252864 ATTTTTTGCTTTTTACGAAATAAAACACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCA
391 ATTATTTGCGTTCTACGAAATAAAACACTTGAAACGTTATTTGGTCAAATTTGAATTCAAATTCA
33252929 AGGCGCAAGTAAGATAAGGGATATCCTTTATTATAAACGGAATGCACAAGAACTAATGGGTGAGA
456 AGGCGCAAGTAAGATAAGGGATATCCTTTATTATAAACGGAATGCACAAGAACTAATGGGTGAGA
33252994 TCATACGAACACTAATGCACCGATCCC
521 TCATACGAACACTAATGCACCGATCCC
*
33253021 AGAGTTGTACTAGGATGGGTAACCTCCTAGGAAGT-CCTCGTGTTGCA-CCCTCCCATTTT-TAT
1 AGAGTTGTACTAGGATGGGTAACCTCCTAGGAAATCCCTCGTGTTGCACCCCTCCCATTTTATAT
* *
33253083 TTCGTGTAATTTTTTTAAAACATAGTTTAACTAATTAGT-TATTTGCGTTTTACGAAATAAATCA
66 TTCATGTAAATTTTTT---ACATAGTTTAACTAATTA-TCTATTTGCGTTTTAC-AAATAAATCA
*
33253147 CTAGAAACGTTATTT-GTCGAATTTGAATT-AAATTCAAAGCGCAAGTGCGATAACGGGTAGCCT
126 CTAGAAACGTTATTTGGTCGAATTTGAATTCAAATTCAAAGCGCAAGTGCAATAACGGGTAGCCT
* * * *
33253210 TCATATAAATAAAATGCACAAGAGCTGACTGGTGCGATCATACTAGCACTAAT-GCACGGATCCC
191 TCATATAAATAAAATGCACAAGAGCTGACAGGCGCGATCATACTAGCACTAATGGAACGGAGCCC
* * * *
33253274 ATCAGAACTCCG-AGTGTTAAG-TGTGCTC-GGCG-GAG-AGTA-TAGGATGGTTGACCTCTTGG
256 ATCAAAACTCCGTA--GTTAAGCT-TGCTCGGGCGAGAGTAATACTAGGATGGGTGACCTCTTAG
* * *
33253333 GATGT-CTCGTGTTG-ACACCTCCCATTTTATGTTTCATGT-ATTTTTTTCTTTAAACATCGTTT
318 GAGGTCCTCGTGTTGCAC-CCTCCCATTTTATGTTTCATATAATTTTTTTCTTTAAACATCGATT
* *
33253395 AACTAATTAGTTATTTGCGTTCTACGAAATAAATCACTTG-AACGGTTATTTGGTCAAATTTGAA
382 AACTAATTAATTATTTGCGTTCTACGAAATAAAACACTTGAAAC-GTTATTTGGTCAAATTTGAA
* ** * ** *
33253459 TTCAAATTCAAAGCGCAAGTGCGATAAGGG-TAAGCCTTTA-TACGAA--GAATGCCCAAGAACT
446 TTCAAATTCAAGGCGCAAGTAAGATAAGGGAT-ATCCTTTATTATAAACGGAATGCACAAGAACT
* ** *
33253520 TATGGGTGCCAT-ATACG-GCACTAATGCACGCGATCC
510 AATGGGTGAGATCATACGAACACTAATGCAC-CGATCC
33253556 TATCAGAAAC
Statistics
Matches: 472, Mismatches: 51, Indels: 35
0.85 0.09 0.06
Matches are distributed among these distances:
535 11 0.02
536 11 0.02
537 23 0.05
539 8 0.02
540 112 0.24
541 29 0.06
542 22 0.05
543 3 0.01
544 21 0.04
545 36 0.08
546 95 0.20
547 76 0.16
548 25 0.05
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (547 bp):
AGAGTTGTACTAGGATGGGTAACCTCCTAGGAAATCCCTCGTGTTGCACCCCTCCCATTTTATAT
TTCATGTAAATTTTTTACATAGTTTAACTAATTATCTATTTGCGTTTTACAAATAAATCACTAGA
AACGTTATTTGGTCGAATTTGAATTCAAATTCAAAGCGCAAGTGCAATAACGGGTAGCCTTCATA
TAAATAAAATGCACAAGAGCTGACAGGCGCGATCATACTAGCACTAATGGAACGGAGCCCATCAA
AACTCCGTAGTTAAGCTTGCTCGGGCGAGAGTAATACTAGGATGGGTGACCTCTTAGGAGGTCCT
CGTGTTGCACCCTCCCATTTTATGTTTCATATAATTTTTTTCTTTAAACATCGATTAACTAATTA
ATTATTTGCGTTCTACGAAATAAAACACTTGAAACGTTATTTGGTCAAATTTGAATTCAAATTCA
AGGCGCAAGTAAGATAAGGGATATCCTTTATTATAAACGGAATGCACAAGAACTAATGGGTGAGA
TCATACGAACACTAATGCACCGATCCC
Found at i:33254431 original size:289 final size:286
Alignment explanation
Indices: 33253021--33256997 Score: 2734
Period size: 289 Copynumber: 13.9 Consensus size: 286
33253011 CACCGATCCC
* * *
33253021 AGAGTTGTACTAGGATGGGTAACCTCCTAGGAAGTCCTCGTGTTGCA-CCCTCCCATTTT-TATT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* * *
33253084 TCGTGTAATTTTTTTAAAACAT-AGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCAC
66 TCATGTAATTTTTTTTAAACATCA-TTTAACTAATTAGTTA-TTGTGTTTTACGAAATAAATCAC
* ** *
33253148 TAGAAACGTTATTT-GTCGAATTTGAATT-AAATTCAAAGCGCAAGTGCGATAACGGGTAGCCTT
129 TTGAAACGTTATTTGGTCGAATTTGAATTCAAATTC-GTGCGCAAGTGCGATAAGGGGTAGCCTT
* * * * * * *
33253211 CATATAAATAAAATGCACAAGAGCTGACTGGTGCGATCATACTAGCACTAATGCACGGATCCCAT
193 TATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGATCCCAT
* * *
33253276 CAGAACTCCG-AGTGTTAAGTGTGCTCGGCG
258 CAGAACTCTGCA--GTTAAGCGTGCTTGGCG
* * * * *
33253306 -GAG-AGTA-TAGGATGGTTGACCTCTTGGGATGT-CTCGTGTTG-ACACCTCCCATTTTATGTT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* * * *
33253366 TCATGTATTTTTTTCTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTCTACGAAATAAATCA
66 TCATGTA-ATTTTT-TTTAAACATCATTTAACTAATTAGTTA-TTGTGTTTTACGAAATAAATCA
* **
33253431 CTTG-AACGGTTATTTGGTCAAATTTGAATTCAAATTCAAAGCGCAAGTGCGATAA-GGGTAAGC
128 CTTGAAAC-GTTATTTGGTCGAATTTGAATTCAAATTC-GTGCGCAAGTGCGATAAGGGGT-AGC
** * * * * *
33253494 CTTTATA-CGA-AGAATGCCCAAGAACTT-ATGGGTGCCAT-ATA-CGGCACTAATGCACGCGAT
190 CTTTATATAAATAGAATGCGCAAG-AGTTGACGGGTGCGATCATACCAGCACTAATGCAC-CGAT
* ** *
33253554 CCTATCAGAAACAATGCAGTTAAGAGTGCTTGGCG
253 CCCATCAG-AACTCTGCAGTTAAGCGTGCTTGGCG
* * **
33253589 AGAGT-GTATTAGGATGGGTGACC-CCTAGGAAGTCCTCGTGTTGCACCCC-CTAATTTTATATT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* * * *
33253651 TCAAGTAA-ATTTTTTAAATAT-ATTTTAACAAATTAGTTTATTGTTGCGTTTTACGGAAA-ACA
66 TCATGTAATTTTTTTTAAACATCA-TTTAACTAATTAG-TTATTG-T--GTTTTAC-GAAATA-A
* * * * *
33253713 ATCACTTGAAACGGTATTTTGGTTAGAATTTGAATTCAAATTCGAGACACCATGTGCCGATAA-G
124 ATCACTTGAAACGTTA-TTTGG-TCGAATTTGAATTCAAATTCGTG-C-GCAAGTG-CGATAAGG
* ** * ** * *
33253777 GGTAG-CTTTATATAAATAGAATGCGCAAGACTTGATAGGTGTGATCATACCCCTCAATAATGCG
184 GGTAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATA-CCAGCACTAATGCA
* *
33253841 CCGAATTCCCATCAGAACTCCGCA-TTTAGCGTGCTTGGGCG
248 CCG-A-TCCCATCAGAACTCTGCAGTTAAGCGTGCTT-GGCG
* * * * *
33253882 AGAGTAGTATCTA-GAT-GGTGGACAT-CT-TGAATGTCCTCGTGTTGCACCACTCCTATTTGAT
1 AGAGTAGTA-CTAGGATGGGT-GACCTCCTGGGAA-GTCCTCGTGTTGCACCCCTCCCATTTTAT
* * *
33253943 ATTTGATGTAAGTTTTTTTAAACATCGTTTAACTAATTAGTTATT-TGCATTTTTACGAAATAAA
63 ATTTCATGTAATTTTTTTTAAACATCATTTAACTAATTAGTTATTGTG---TTTTACGAAATAAA
* * ** * **
33254007 TCACTTGAAACATTATTCGGTTTAATTTGAATTCAAATTCGTGCGCAAGTGCAATAAGGTATAGC
125 TCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGTGCGCAAGTGCGATAAGGGGTAGC
** * * * * ** ** *
33254072 CTTTATTATAAATAGAATTTGTAAAAGTTTGACGGGGGCGACCATACCAGCTTTAATGCAGAGGT
190 CTTTA-TATAAATAGAATGCGCAAGAG-TTGACGGGTGCGATCATACCAGCACTAATGCACCGAT
* *
33254137 CCCATCAGAACTCTGCAGTTAATCGTGCTTGGTG
253 CCCATCAGAACTCTGCAGTTAAGCGTGCTTGGCG
* * * *
33254171 AGAGTCGTACTAGGATGGGTGACATCCTGGGAAGTCCTCGTGTTGCATCCCT-CCATTTTATTTT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
*
33254235 TCATGTAATTTTTTTCTTTAAACATCATTTAACTAA-TAGTTATTGTGTTTTATGAAATAAATCA
66 TCATGTAA--TTTTT-TTTAAACATCATTTAACTAATTAGTTATTGTGTTTTACGAAATAAATCA
* * *
33254299 CTTGAAACGTTATTTTGGTCGAATTTG-ATATAAAATTCGTGTGCAGGTGCGATAAGGGGTAGCC
128 CTTGAAACGTTA-TTTGGTCGAATTTGAAT-TCAAATTCGTGCGCAAGTGCGATAAGGGGTAGCC
* * *
33254363 TTCATATAAAATAGAATGCGCAAGAGTTGACGGGCGCGATCATACCATCACT-ATGCACCAGATC
191 TTTATAT-AAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACC-GATC
* *
33254427 CCATCAGAACTCTGCAGTTAAGCGTATGC-AGGCA
254 CCATCAGAACTCTGCAGTTAAGCG--TGCTTGGCG
* * ** * *
33254461 AAAGTAGTACTAGGATGGGTGACCTCCT-AGAAGTTTTTGTGTTGCACCCCTCCCGTTTTATATT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* * * * * *
33254525 TCAT-TGATTTTTTTTTTAAACATCACTTAACTAATGTA-TTCTTGTGTTTTATG-AATATATCT
66 TCATGT-A-ATTTTTTTTAAACATCATTTAACTAAT-TAGTTATTGTGTTTTACGAAATAAATCA
** * * ** * * ***
33254587 CTCAAAACGTGT-TTT-CTTGAATTCAAATTCAAATTCGAGGGGCAAGTGCGATAAATAG-AGGC
128 CTTGAAACGT-TATTTGGTCGAATTTGAATTCAAATTCG-TGCGCAAGTGCGATAAGGGGTA-GC
* * * * ** * *
33254649 CTTTATATAAATAGAATGCGCATGAGTATGCCGGGTGCGATTATATCAGTGCTAATGCTCTGGAT
190 CTTTATATAAATAGAATGCGCAAGAGT-TGACGGGTGCGATCATACCAGCACTAATGCAC-CGAT
* * *
33254714 CTCATTAGAACTCTGTAGTTAAGCGTGCCTTGGCG
253 CCCATCAGAACTCTGCAGTTAAGCGTG-CTTGGCG
* * * *
33254749 AGAGTAATGCTAGGAT-GGTGGACCTCCTGGAAAGTCCTCGTGTTTGCACCCCTCCCTTTTTATA
1 AGAGTAGTACTAGGATGGGT-GACCTCCTGGGAAGTCCTCGTG-TTGCACCCCTCCCATTTTATA
* * * ** *
33254813 TTTCATGTAA-TTTTTTT-AATATAATTTAACTAATTACTTATTAGCATTTTACGAAATAAATTA
64 TTTCATGTAATTTTTTTTAAACATCATTTAACTAATTAGTTATT-GTGTTTTACGAAATAAATCA
* * *
33254876 CTTGAAACGTTATTTGGTCGAATTTGAATTCAAATT-TTAAGAGGAAGTGCGATAAGGGGTAGCC
128 CTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGT--GCGCAAGTGCGATAAGGGGTAGCC
* ** *
33254940 TTCATATAAATAGGTTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCGGGA-C
191 TTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCA-C-CGATC
* * * ** *
33255004 CAATC-GAAGCTC-CCAAGATAAGCGACCTAGGCG
254 CCATCAGAA-CTCTGC-AGTTAAGCGTGCTTGGCG
* * *
33255037 AGAAGAAGTACTAGGATGGGTGACCTCCTAGGAAATCCTCGTGTTGCACCCCTCCCATTTT-TAT
1 AG-AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATAT
** ** * * * * * *
33255101 TTTGTGTAAGGTTTTTAAAAAAT-GTTTACCTAATTAGTTATTTGTATTTTACTAAAT-AATCAC
65 TTCATGTAATTTTTTTTAAACATCATTTAACTAATTAGTTA-TTGTGTTTTACGAAATAAATCAC
* * * * * *
33255164 TTGAAACATTATTTGGTCGAATTTGAATTCAAAGTCATGGCGTAAGGGCAATAAGGGGTAGCCTT
129 TTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGT-GCGCAAGTGCGATAAGGGGTAGCCTT
* * * * *
33255229 TATATAAGTAGATTGCGTAAGAGTTGATAGGGT-TGATCATACCAGCACTAATAG-ACCGAATCC
193 TATATAAATAGAATGCGCAAGAGTTGA-CGGGTGCGATCATACCAGCACTAAT-GCACCG-ATCC
* * * *
33255292 CATCAGAAC-CTGCA-ATCATCATGCTTGG-G
255 CATCAGAACTCTGCAGTTAAGCGTGCTTGGCG
* * *
33255321 ATAGAGTTAGTACAAGGATGGGGTGACCTCCTGGGATGTACTCGTGTTGCACCCCTCCCATTTT-
1 --AGAG-TAGTACTAGGAT-GGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTA
* * *
33255385 TATATTCATGTAACTTTTTTTTACAACAT--TGTTAACTAATTACTTATTTGCGTTTAACGAAAT
62 TAT-TTCATGTAA-TTTTTTTTA-AACATCAT-TTAACTAATTAGTTA-TTGTGTTTTACGAAAT
* ** * * * *
33255448 AAATCACTTGAAATGTTATTTGGGTTTAATTTGAATT-AAATTCGAGGTGCAAGTGTG-TATGGG
122 AAATCACTTGAAACGTTATTT-GGTCGAATTTGAATTCAAATTCG-TGCGCAAGTGCGATAAGGG
* * ** ** *
33255511 GTAGCTTTTTATATAAATAGAAGGCGCAAGAGTTGACGGGTATTGATCATACCCTCACTAATACA
185 GTAGC-CTTTATATAAATAGAATGCGCAAGAGTTGACGGGT-GCGATCATACCAGCACTAATGCA
* * * * *
33255576 CTGATCCCATCAGAACTCCGTAG-TAA-CGTGCCTGGGTG
248 CCGATCCCATCAGAACTCTGCAGTTAAGCGTG-CTTGGCG
* * * * * **
33255614 ATAGTAGTACTAGGATGGGTGA-CTTCT-GAAATTCCTCATGTTGCACCCCTCTAAATTTTATAT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC-CCATTTTATAT
* * * * * *
33255677 TTCATGTAA--TTTTTT-AACATAATTGAGCTAATTACTTATTGAGCATTTACGAAATAAATCAC
65 TTCATGTAATTTTTTTTAAACATCATTTAACTAATTAGTTATTGTG-TTTTACGAAATAAATCAC
* * * * * * *
33255739 TGGAAATGTTATTTGGTCGAATTTGAAATTCAAATTCGAAGCGGAAATGTGATATGGGGTAGCCT
129 TTGAAACGTTATTTGGTCGAATTTG-AATTCAAATTCG-TGCGCAAGTGCGATAAGGGGTAGCCT
* * * * ** ** *
33255804 TTGTATAAATAGATTTGCACAAGAGTTGACGAGTGAAAAAATACCAGCACTAATGCACCAGGTCC
192 TTATATAAATAGA-ATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACC-GATCC
* * * * * *
33255869 AAACAGAACTTCTCCAGATAA-AGTGCCTAGGC-
255 CATCAGAAC-TCTGCAGTTAAGCGTG-CTTGGCG
* *
33255901 AGAGTAGTACT-GGAT-GCTG-CCT--TGGGAAGTCCTCGTGTTGCACCCCTGCCA-TTTATATT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* * * * * * ** *
33255960 TTATGTAA-TTTTTTTAAAAAACATTTACCTAATTAGTT-TTTTGCTTTATTAAAT-AATCAGTT
66 TCATGTAATTTTTTTTAAACATCATTTAACTAATTAGTTATTGTGTTTTACGAAATAAATCACTT
* * * *
33256022 GAAACAG-TATTTGGTCGAATTTGACTTCAAATTCGATGCACAAGGGCGATAAGGGGGTAGCCCT
131 GAAAC-GTTATTTGGTCGAATTTGAATTCAAATTCG-TGCGCAAGTGCGATAA-GGGGTAGCCTT
* * * * * * * *
33256086 TATATAAGTAGATTGCGTAAGAGTTGATGCGGTGTGATCATACCAGCACCAATGGAACCGGTCCC
193 TATATAAATAGAATGCGCAAGAGTTGACG-GGTGCGATCATACCAGCACTAAT-GCACCGATCCC
* ** *
33256151 ATCAAAACTCCACAGTTAAGCATGCTTGGGTCAAAG
256 ATCAGAACTCTGCAGTTAAGCGTGCTT-GG-C---G
* * * *
33256187 TGAGTAGTACT-GGATGGGTGACCGCCT-GGAAGTAAGCTC-TGGTGCA--CCTCCCATTTTATA
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT--CCTCGTGTTGCACCCCTCCCATTTTATA
* *
33256247 TTTCATGTAA----TTTT-----T-A---AACTAATTAGTTATT-TACATTTAACGAAA-AAATC
64 TTTCATGTAATTTTTTTTAAACATCATTTAACTAATTAGTTATTGT--GTTTTACGAAATAAATC
* * * * *
33256297 ACTTGCAACGTGGATTTGGTCGAATTTGAATTCAAATTTGATGC-TAATGTG-TATGGGAAGAGG
127 ACTTGAAACGT-TATTTGGTCGAATTTGAATTCAAATTCG-TGCGCAA-GTGCGAT---AAG-GG
* * * **
33256360 GT-G-CTTTATATAAATTGAATGCGCAAGAGTTGACGGGTCCGATC-TGCC-TTACTAATGCACC
185 GTAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACC
** * * * *
33256421 AGATCCCATCAGATTTCCGCAGTCAAGCATGGTTGGGCG
250 -GATCCCATCAGAACTCTGCAGTTAAGCGTGCTT-GGCG
*
33256460 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCACGTGTTGC-CCCCTTCCCATTTTATAT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCC-TCCCATTTTATAT
* *
33256524 TTCA-GTAATTTTTTTTCTTAAACATCGTTTAACTAATTA--TATATGCCGTTTTACGAAATAAA
65 TTCATGTAA--TTTTTT-TTAAACATCATTTAACTAATTAGTTAT-TG-TGTTTTACGAAATAAA
* * * * *
33256586 TCACCTTGAAGCATTATTTGGTTGAATTTGAATTCAAATTCGAGGTGCAAGTGCCGATAA-GGGT
125 TCA-CTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCG-TGCGCAAGTG-CGATAAGGGGT
* * *
33256650 -GCCTTTATATAAA-AGAATGCGCAAGAGTTGACGGG-GCGACCATACCATCACTAATGCACTGG
187 AGCCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCAC-CG
* * * **
33256712 AT-CCA-CAAAACTCTGCGGTTAACCCGTGCACGG-G
251 ATCCCATCAGAACTCTGCAGTTAA-GCGTGCTTGGCG
* * * * * * * *
33256746 CAAAATGGTAC-AGCAT-GGTGACATCC-AGGAAGTCCTCGTG-TGCATCCCTTCCATTTTATAT
1 -AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATAT
* * * * * * * *
33256807 TTCATTGAAATTTTTTTGTTTAAACAACACTTAACAAATTAGTTATTTGCGTTTCATGAAATATA
65 TTCA-TGTAA--TTTTT-TTTAAACATCATTTAACTAATTAGTTA-TTGTGTTTTACGAAATAAA
* * * * * *
33256872 TCACTTGAAACGTTGCTTT-TTCAAATTTGAATTCAAATTTGAGGATGCAGTAGTGCGATAAGGG
125 TCACTTGAAACGTT-ATTTGGTCGAATTTGAATTCAAATTCG-TG-CGCA--AGTGCGATAAGGG
* * * *
33256936 GTAG-CTTTATATAAATGGAAATACGCAAGAGTTGATGGGTGCGATCATACCAGTACTAATGC
185 GTAGCCTTTATATAAATAG-AATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGC
33256998 TCAAAATCCC
Statistics
Matches: 2916, Mismatches: 547, Indels: 452
0.74 0.14 0.12
Matches are distributed among these distances:
273 13 0.00
274 20 0.01
275 12 0.00
276 22 0.01
277 46 0.02
278 6 0.00
279 28 0.01
280 104 0.04
281 102 0.03
282 101 0.03
283 93 0.03
284 192 0.07
285 201 0.07
286 195 0.07
287 311 0.11
288 309 0.11
289 358 0.12
290 348 0.12
291 210 0.07
292 101 0.03
293 55 0.02
294 43 0.01
295 23 0.01
296 23 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (286 bp):
AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
TCATGTAATTTTTTTTAAACATCATTTAACTAATTAGTTATTGTGTTTTACGAAATAAATCACTT
GAAACGTTATTTGGTCGAATTTGAATTCAAATTCGTGCGCAAGTGCGATAAGGGGTAGCCTTTAT
ATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGATCCCATCAG
AACTCTGCAGTTAAGCGTGCTTGGCG
Found at i:33255195 original size:577 final size:571
Alignment explanation
Indices: 33252426--33256997 Score: 2582
Period size: 577 Copynumber: 8.0 Consensus size: 571
33252416 CATACCAAAG
* ** * ** *
33252426 CTAATGCACCAGATCCCATCAGAACTCCACAGTTAAGAGTGCTTGGCGAGAGTTGTACTATGATG
1 CTAATGCA-CGGAT-CCATCAGAACTCTGCAGTTAAGCGTGCTTGGCGAGAGTAAT-CTAGGATG
* * *
33252491 GGTGACCTCCTGGGAAATCCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAAATTTTTT-
63 GGTGACCTCCTAGGAAGT-CCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTTTA
* *
33252555 -ATATAGTTTAACTAATTA-TCTATTTGCGTTTTAC-AAATAAATCACTTGAAACGTTA-TTTGG
127 AACATAATTTAACTAATTAGT-TATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTTGG
* * * * * * * * *
33252616 TCGAATTTGAATTCAACTTCGAGGCGCAAGTTCAATAAGGGGTAGCCTTTATATAAATAGATTGT
191 TCGAATTTGAATTCAAATTCTAAGAGCAAGTGCGATAAGGGGTAGCCTTCATATAAATAGAATGC
* * * * * ** * * *
33252681 GCAAGAGTTGACAGGCGTGATCATACTAGCACTAATGGAATGGAGCCCATCAAAACTCCGTAGTT
256 GCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCC-CAGTT
** * * * *
33252746 AAGC-TTGCTCGGGCGAGAGTAATACTAGGATGGGTGACCTCTTAGGAGGTCCTCGTGTTGCA-C
320 AAGCGTACCT-AGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACC
* * * ** * * * *
33252809 CCTCCCATTTTATGTTTCCTATAATTTTTTTCTTTAAACATCGATTAACTAATTAATTTTTTGCT
384 CCTCCCATTTTATATTT-GTGT-ATAGTTTT-TTTAAACATCGTTTAACTAATTAGTTATTTGCA
* *
33252874 TTTTACGAAATAAAACACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTC-AAGGCGCAAG
446 TTTTACGAAATAAATCACTTGAAACATTATTTGGTCGAATTTGAATTCAAATTCGAA-GCGCAAG
** * * ** * * *
33252938 TAAGATAAGGGATATCCTTTATTATAAACGGAATGCACAAGAACTAAT--GGGTGAGATCATAC-
510 TGCGATAAGGTA-AGCCTTTA-TATAAATAGAATGCGCAAG-AGT-ATGCGGGTGCGAT-ATACA
33253000 G-
570 GT
** * * *
33253001 --AA--CACTAATGCA-CCG-A-TC-CCAG---A----G-TT-------GT-A-CTAGGATGGGT
1 CTAATGCACGGATCCATCAGAACTCTGCAGTTAAGCGTGCTTGGCGAGAGTAATCTAGGATGGGT
* *
33253041 AACCTCCTAGGAAGTCCTCGTGTTGCA-CCCTCCCATTTT-TATTTCGTGTAATTTTTTTAAAAC
66 GACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTTT-AAAC
* *
33253104 ATAGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTAGAAACGTTA-TTT-GTCGA
130 ATAATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTTGGTCGA
* * * * *
33253167 ATTTGAATT-AAATTCAAAGCGCAAGTGCGATAACGGGTAGCCTTCATATAAATAAAATGCACAA
195 ATTTGAATTCAAATTCTAAGAGCAAGTGCGATAAGGGGTAGCCTTCATATAAATAGAATGCGCAA
* * * *
33253231 GAGCTGACTGGTGCGATCATACTAGCACTAATGCA-CGGATCCCATCAGAACTCCGAGTGTTAAG
260 GAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCCA--GTTAAG
* * * * * * * *
33253295 TGT-GCTCGGCG-GAG-AGTA-TAGGATGGTTGACCTCTTGGGATGT-CTCGTGTTG-ACACCTC
323 CGTACCTAGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTC
* * ** * *
33253354 CCATTTTATGTTTCATGTATTTTTTTCTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTCTA
388 CCATTTTATATTT-GTGTATAGTTTT-TTTAAACATCGTTTAACTAATTAGTTATTTGCATTTTA
* * *
33253419 CGAAATAAATCACTTG-AACGGTTATTTGGTCAAATTTGAATTCAAATTCAAAGCGCAAGTGCGA
451 CGAAATAAATCACTTGAAAC-ATTATTTGGTCGAATTTGAATTCAAATTCGAAGCGCAAGTGCGA
** * * * * *
33253483 TAAGGGTAAGCCTTTATA-CGA-AGAATGCCCAAGAACTTAT--GGGTGCCATATACGGCA
515 TAA-GGTAAGCCTTTATATAAATAGAATGCGCAAG-A-GTATGCGGGTGCGATATACAG-T
** * *
33253540 CTAATGCACGCGATCCTATCAGAAACAATGCAGTTAAGAGTGCTTGGCGAGAGTGTAT-TAGGAT
1 CTAATGCACG-GATCC-ATCAG-AACTCTGCAGTTAAGCGTGCTTGGCGAGAGT-AATCTAGGAT
** * *
33253604 GGGTGACC-CCTAGGAAGTCCTCGTGTTGCACCCC-CTAATTTTATATTTCAAGTAAATTTTTTA
62 GGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTTTA
* * * *
33253667 AATATATTTTAACAAATTAGTTTATTGTTGCGTTTTACGGAAA-ACAATCACTTGAAACGGTATT
127 AACATAATTTAACTAATTAG-TTA-T-TTGCGTTTTAC-GAAATA-AATCACTTGAAACGTTATT
* * * * * *
33253731 TTGGTTAGAATTTGAATTCAAATTCGAGACACCATGTGCCGATAA-GGGTAG-CTTTATATAAAT
187 TTGG-TCGAATTTGAATTCAAATTCTA-AGAGCAAGTG-CGATAAGGGGTAGCCTTCATATAAAT
* ** * ** * * *
33253794 AGAATGCGCAAGACTTGATAGGTGTGATCATACCCCTCAATAATGCGCCGAATTCCCATCAGAAC
249 AGAATGCGCAAGAGTTGACGGGTGCGATCATA-CCAGCACTAATGCACCGGA-TCCCATCAGAAC
* * * * * *
33253859 TCCGCA-TTTAGCGTGCTTGGGCGAGAGTAGTATCTA-GAT-GGTGGACAT-CT-TGAATGTCCT
312 TCC-CAGTTAAGCGTACCTAGGCGAGAGTAGTA-CTAGGATGGGT-GACCTCCTAGGAA-GTCCT
* * *
33253919 CGTGTTGCACCACTCCTATTTGATATTTGATGTA-AGTTTTTTTAAACATCGTTTAACTAATTAG
373 CGTGTTGCACCCCTCCCATTTTATATTTG-TGTATAGTTTTTTTAAACATCGTTTAACTAATTAG
* **
33253983 TTATTTGCATTTTTACGAAATAAATCACTTGAAACATTATTCGGTTTAATTTGAATTCAAATTCG
437 TTATTTGCA-TTTTACGAAATAAATCACTTGAAACATTATTTGGTCGAATTTGAATTCAAATTCG
* * ** * * * *
33254048 -TGCGCAAGTGCAATAAGGTATAGCCTTTATTATAAATAGAATTTGTAAAAGTTTGACGGGGGCG
501 AAGCGCAAGTGCGATAAGGTA-AGCCTTTA-TATAAATAGAATGCGCAAGAGTATG-CGGGTGCG
*
33254112 ACCATACCAGCT
563 A-TATA-CAG-T
* * * * **
33254124 TTAATGCA-GAGGTCCCATCAGAACTCTGCAGTTAATCGTGCTTGGTGAGAGTCGTACTAGGATG
1 CTAATGCACG-GAT-CCATCAGAACTCTGCAGTTAAGCGTGCTTGGCGAGAGTAAT-CTAGGATG
* * * *
33254188 GGTGACATCCTGGGAAGTCCTCGTGTTGCATCCCT-CCATTTTATTTTTCATGTAATTTTTTTCT
63 GGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAA---TTTT-T
* * *
33254252 TTAAACATCATTTAACTAA-TAGTTA-TTGTGTTTTATGAAATAAATCACTTGAAACGTTATTTT
124 TTAAACATAATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTT
* * *
33254315 GGTCGAATTTG-ATATAAAATTCGT--GTGCAGGTGCGATAAGGGGTAGCCTTCATATAAAATAG
189 GGTCGAATTTGAAT-TCAAATTC-TAAGAGCAAGTGCGATAAGGGGTAGCCTTCATAT-AAATAG
* * * *
33254377 AATGCGCAAGAGTTGACGGGCGCGATCATACCATCACT-ATGCACCAGATCCCATCAGAACTCTG
251 AATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTC-C
* * * ** *
33254441 CAGTTAAGCGTATGC-AGGCAAAAGTAGTACTAGGATGGGTGACCTCCTA-GAAGTTTTTGTGTT
315 CAGTTAAGCGTA-CCTAGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTT
* * ** ** *
33254504 GCACCCCTCCCGTTTTATATTTCAT-TGATTTTTTTTTTAAACATCACTTAACTAATGTA-TTCT
379 GCACCCCTCCCATTTTATATTT-GTGT-ATAGTTTTTTTAAACATCGTTTAACTAAT-TAGTTAT
* * * ** * * * ** *
33254567 TGTG--TTTTATG-AATATATCTCTCAAAACGTGT-TTT-CTTGAATTCAAATTCAAATTCGAGG
441 T-TGCATTTTACGAAATAAATCACTTGAAACAT-TATTTGGTCGAATTTGAATTCAAATTCGAAG
* * *
33254627 GGCAAGTGCGATAA-ATAGAGGCCTTTATATAAATAGAATGCGCATGAGTATGCCGGGTGCGATT
504 CGCAAGTGCGATAAGGTA-A-GCCTTTATATAAATAGAATGCGCAAGAGTATG-CGGGTGCGA-T
33254691 ATATCAGT
565 ATA-CAGT
* * *
33254699 GCTAATGCTCTGGATCTCATTAGAACTCTGTAGTTAAGCGTGCCTTGGCGAGAGTAATGCTAGGA
1 -CTAATGCAC-GGATC-CATCAGAACTCTGCAGTTAAGCGTG-CTTGGCGAGAGTAAT-CTAGGA
*
33254764 T-GGTGGACCTCCT-GGAAAGTCCTCGTGTTTGCACCCCTCCCTTTTTATATTTCATGTAATTTT
61 TGGGT-GACCTCCTAGG-AAGTCCTCGTG-TTGCACCCCTCCCATTTTATATTTCATGTAATTTT
* * * * *
33254827 TTT-AATATAATTTAACTAATTACTTATTAGCATTTTACGAAATAAATTACTTGAAACGTTA-TT
123 TTTAAACATAATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTT
* * **
33254890 TGGTCGAATTTGAATTCAAATTTTAAGAGGAAGTGCGATAAGGGGTAGCCTTCATATAAATAGGT
188 TGGTCGAATTTGAATTCAAATTCTAAGAGCAAGTGCGATAAGGGGTAGCCTTCATATAAATAGAA
* *
33254955 TGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCGGGA-CCAATC-GAAGCTCCC
253 TGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCA-CCGGATCCCATCAGAA-CTCCC
* * *
33255018 AAGATAAGCG-ACCTAGGCGAGAAGAAGTACTAGGATGGGTGACCTCCTAGGAAATCCTCGTGTT
316 -AGTTAAGCGTACCTAGGCGAG-AGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTT
* * * *
33255082 GCACCCCTCCCATTTT-TATTTTGTGTA-AGGTTTTTAAAAAAT-GTTTACCTAATTAGTTATTT
379 GCACCCCTCCCATTTTATA-TTTGTGTATAGTTTTTTTAAACATCGTTTAACTAATTAGTTATTT
* * * * *
33255144 GTATTTTACTAAAT-AATCACTTGAAACATTATTTGGTCGAATTTGAATTCAAAGTC-ATGGCGT
443 GCATTTTACGAAATAAATCACTTGAAACATTATTTGGTCGAATTTGAATTCAAATTCGA-AGCGC
* * * * * * *
33255207 AAGGGCAATAAGGGGT-AGCCTTTATATAAGTAGATTGCGTAAGAGT-TGATAGGGT-TGATCAT
507 AAGTGCGATAA--GGTAAGCCTTTATATAAATAGAATGCGCAAGAGTATG--CGGGTGCGAT-AT
*
33255269 ACCAGCA
567 A-CAG-T
* * * * * * *
33255276 CTAATAG-ACCGAATCCCATCAGAAC-CTGCA-ATCATCATGCTTGG-GATAGAGTTAGTACAAG
1 CTAAT-GCA-CGGAT-CCATCAGAACTCTGCAGTTAAGCGTGCTTGGCG--AGAG-TAAT-CTAG
* * *
33255337 GATGGGGTGACCTCCTGGGATGTACTCGTGTTGCACCCCTCCCATTTT-TATATTCATGTAACTT
59 GAT-GGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATAT-TTCATGTAA--T
* * *
33255401 TTTTTTACAACAT--TGTTAACTAATTACTTATTTGCGTTTAACGAAATAAATCACTTGAAATGT
120 TTTTTTA-AACATAAT-TTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGT
* ** * * * * * * *
33255464 TATTTGGGTTTAATTTGAATT-AAATTCGAGGTGCAAGTGTG-TATGGGGTAGCTTTTTATATAA
183 TATTTTGGTCGAATTTGAATTCAAATTCTAAGAGCAAGTGCGATAAGGGGTAGC-CTTCATATAA
* ** ** * *
33255527 ATAGAAGGCGCAAGAGTTGACGGGTATTGATCATACCCTCACTAATACA-CTGATCCCATCAGAA
247 ATAGAATGCGCAAGAGTTGACGGGT-GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
* * * * * * * * *
33255591 CTCCGTAG-TAA-CGTGCCTGGGTGATAGTAGTACTAGGATGGGTGA-CTTCT-GAAATTCCTCA
311 CTCC-CAGTTAAGCGTACCTAGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCG
** * ** * * *
33255652 TGTTGCACCCCTCTAAATTTTATATTTCATGTA-A--TTTTTT-AACATAATTGAGCTAATTACT
375 TGTTGCACCCCTC-CCATTTTATATTT-GTGTATAGTTTTTTTAAACATCGTTTAACTAATTAGT
* * **
33255713 TATTGAGCA-TTTACGAAATAAATCACTGGAAATGTTATTTGGTCGAATTTGAAATTCAAATTCG
438 TATT-TGCATTTTACGAAATAAATCACTTGAAACATTATTTGGTCGAATTTG-AATTCAAATTCG
* * * * * * * *
33255777 AAGCGGAAATGTGATATGGGGT-AGCCTTTGTATAAATAGATTTGCACAAGAGT-TGACGAGTGA
501 AAGCGCAAGTGCGATA--AGGTAAGCCTTTATATAAATAGA-ATGCGCAAGAGTATG-CGGGTG-
** * *
33255840 AAAAATACCAGCA
561 CGATATA-CAG-T
* * * * * *
33255853 CTAATGCACCAGG-TCCAAACAGAACTTCTCCAGATAA-AGTGCCTAGGC-AGAGTAGTACT-GG
1 CTAATGCA-C-GGATCC-ATCAGAAC-TCTGCAGTTAAGCGTG-CTTGGCGAGAGTAAT-CTAGG
* * * *
33255914 AT-GCTG-CCT--TGGGAAGTCCTCGTGTTGCACCCCTGCCA-TTTATATTTTATGTAATTTTTT
60 ATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTT
* * * ** *
33255974 TAAA-AAACATTTACCTAATTAGTTTTTTGC--TTTATTAAAT-AATCAGTTGAAACAG-TA-TT
125 TAAACATA-ATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAAC-GTTATTT
* * * * *
33256033 TGGTCGAATTTGACTTCAAATTCGATGCA-CAAGGGCGATAAGGGGGTAGCCCTT-ATATAAGTA
188 TGGTCGAATTTGAATTCAAATTCTAAG-AGCAAGTGCGATAA-GGGGTAG-CCTTCATATAAATA
* * * * * * *
33256096 GATTGCGTAAGAGTTGATGCGGTGTGATCATACCAGCACCAATGGAACCGG-TCCCATCAAAACT
250 GAATGCGCAAGAGTTGACG-GGTGCGATCATACCAGCACTAAT-GCACCGGATCCCATCAGAACT
* * * * * * *
33256160 CCACAGTTAAGCATGCTTGGGTCAAAGTGAGTAGTACT-GGATGGGTGACCGCCT-GGAAGTAAG
313 CC-CAGTTAAGCGTACCTAGG-C---GAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGT--C
* *
33256223 CTC-TGGTGCA--CCTCCCATTTTATATTTCATGTA-A---TTTTT----A------AACTAATT
371 CTCGTGTTGCACCCCTCCCATTTTATATTT-GTGTATAGTTTTTTTAAACATCGTTTAACTAATT
* * * * *
33256271 AGTTATTTACATTTAACGAAA-AAATCACTTGCAACGTGGATTTGGTCGAATTTGAATTCAAATT
435 AGTTATTTGCATTTTACGAAATAAATCACTTGAAACAT-TATTTGGTCGAATTTGAATTCAAATT
* * * * * * * *
33256335 TGATGC-TAA-TGTG-TATGGGAAGAGGGTGCTTTATATAAATTGAATGCGCAAGAGT-TGACGG
499 CGAAGCGCAAGTGCGATA-AGGTA-A--G-CCTTTATATAAATAGAATGCGCAAGAGTATG-CGG
* * * **
33256396 GTCCGATCTGCCTT
558 GTGCGATATACAGT
* ** * * * * *
33256410 ACTAATGCACCAGATCCCATCAGATTTCCGCAGTCAAGCATGGTTGGGCGAGAGTAGTACTAGGA
1 -CTAATGCA-CGGAT-CCATCAGAACTCTGCAGTTAAGCGTGCTT-GGCGAGAGTAAT-CTAGGA
* *
33256475 TGGGTGACCTCCTGGGAAGTCCACGTGTTGC-CCCCTTCCCATTTTATATTTCA-GTAATTTTTT
61 TGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCC-TCCCATTTTATATTTCATGTAA---TTT
** * * *
33256538 TTCTTAAACATCGTTTAACTAATTA--TATATGCCGTTTTACGAAATAAATCACCTTGAAGCATT
122 TT-TTAAACATAATTTAACTAATTAGTTATTTG-CGTTTTACGAAATAAATCA-CTTGAAACGTT
* * * * *
33256601 A-TTTGGTTGAATTTGAATTCAAATTCGAGGTGCAAGTGCCGATAA-GGGT-GCCTTTATATAAA
184 ATTTTGGTCGAATTTGAATTCAAATTCTAAGAGCAAGTG-CGATAAGGGGTAGCCTTCATATAAA
* * * *
33256663 -AGAATGCGCAAGAGTTGACGGG-GCGACCATACCATCACTAATGCACTGGAT-CCA-CAAAACT
248 TAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACT
* * * * * * * * * *
33256724 CTGCGGTTAACCCGTGCAC-GGGC-AAAATGGTAC-AGCAT-GGTGACATCC-AGGAAGTCCTCG
313 C-CCAGTTAA-GCGTAC-CTAGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCG
* * * * ** * ** *
33256784 TG-TGCATCCCTTCCATTTTATATTTCATTGAAATTTTTTTGTTTAAACAACACTTAACAAATTA
375 TGTTGCACCCCTCCCATTTTATATTT--GTG-TATAGTTTT-TTTAAACATCGTTTAACTAATTA
* * * * * * * * *
33256848 GTTATTTGCGTTTCATGAAATATATCACTTGAAACGTTGCTTT-TTCAAATTTGAATTCAAATTT
436 GTTATTTGCATTTTACGAAATAAATCACTTGAAACATT-ATTTGGTCGAATTTGAATTCAAATTC
* * * * *
33256912 GAGGATGCAGTAGTGCGATAAGGGGT-AG-CTTTATATAAATGGAAATACGCAAGAGT-TGATGG
500 GAAG-CGCA--AGTGCGATAA--GGTAAGCCTTTATATAAATAG-AATGCGCAAGAGTATG-CGG
33256974 GTGCGATCATACCAGT
558 GTGCGAT-ATA-CAGT
33256990 ACTAATGC
1 -CTAATGC
33256998 TCAAAATCCC
Statistics
Matches: 3136, Mismatches: 574, Indels: 569
0.73 0.13 0.13
Matches are distributed among these distances:
536 4 0.00
537 22 0.01
538 2 0.00
539 5 0.00
540 106 0.03
541 36 0.01
542 22 0.01
543 6 0.00
544 24 0.01
545 33 0.01
546 97 0.03
547 68 0.02
548 26 0.01
550 5 0.00
553 1 0.00
556 3 0.00
557 21 0.01
558 32 0.01
559 47 0.01
560 62 0.02
561 53 0.02
562 4 0.00
563 4 0.00
564 55 0.02
565 60 0.02
566 122 0.04
567 77 0.02
568 71 0.02
569 39 0.01
570 48 0.02
571 91 0.03
572 22 0.01
573 43 0.01
574 118 0.04
575 142 0.05
576 347 0.11
577 375 0.12
578 298 0.10
579 197 0.06
580 113 0.04
581 62 0.02
582 60 0.02
583 36 0.01
584 52 0.02
586 3 0.00
587 6 0.00
588 16 0.01
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (571 bp):
CTAATGCACGGATCCATCAGAACTCTGCAGTTAAGCGTGCTTGGCGAGAGTAATCTAGGATGGGT
GACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTTTAAACA
TAATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTTGGTCGAA
TTTGAATTCAAATTCTAAGAGCAAGTGCGATAAGGGGTAGCCTTCATATAAATAGAATGCGCAAG
AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCCAGTTAAGCGT
ACCTAGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCA
TTTTATATTTGTGTATAGTTTTTTTAAACATCGTTTAACTAATTAGTTATTTGCATTTTACGAAA
TAAATCACTTGAAACATTATTTGGTCGAATTTGAATTCAAATTCGAAGCGCAAGTGCGATAAGGT
AAGCCTTTATATAAATAGAATGCGCAAGAGTATGCGGGTGCGATATACAGT
Found at i:33257140 original size:143 final size:145
Alignment explanation
Indices: 33256864--33257140 Score: 375
Period size: 143 Copynumber: 1.9 Consensus size: 145
33256854 TGCGTTTCAT
* * *
33256864 GAAATATATCACTTGAAACGTTGCTTTTTCAAATTTGAATTCAAATTTGAGGATGCAGTAGTGCG
1 GAAATAAATCACTTGAAACGTTGATTTGTCAAATTTGAATTCAAATTTGAGGA-GCAG-AGTGCG
* * * * * *
33256929 ATAAGGGGTAGCTTTATATAAATGGAAATACGCAAGAGTTGATGGGTGCGATCATACCAGTACTA
64 ATAAGGAGTAACCTTATATAAATAGAAATACGCAAGAGTTGACGGGTGCGATCATACCAGCACTA
33256994 ATGCTCAAAATCCCATC
129 ATGCTCAAAATCCCATC
33257011 GAAATAAATCACTTGAAACGTT-ATTTGGTCAAATTTGAATTC-AATTTCGAGGCA-CA-AGTGC
1 GAAATAAATCACTTGAAACGTTGATTT-GTCAAATTTGAATTCAAATTT-GAGG-AGCAGAGTGC
* *
33257072 GATAAGGAGTAACCTTATATAAGTAG-AATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACT
63 GATAAGGAGTAACCTTATATAAATAGAAATACGCAAGAGTTGACGGGTGCGATCATACCAGCACT
33257136 AATGC
128 AATGC
33257141 ACTGGATCCT
Statistics
Matches: 116, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
143 40 0.34
144 26 0.22
146 10 0.09
147 39 0.34
148 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.28
Consensus pattern (145 bp):
GAAATAAATCACTTGAAACGTTGATTTGTCAAATTTGAATTCAAATTTGAGGAGCAGAGTGCGAT
AAGGAGTAACCTTATATAAATAGAAATACGCAAGAGTTGACGGGTGCGATCATACCAGCACTAAT
GCTCAAAATCCCATC
Found at i:33257412 original size:432 final size:431
Alignment explanation
Indices: 33256577--33257412 Score: 959
Period size: 432 Copynumber: 1.9 Consensus size: 431
33256567 TGCCGTTTTA
* ** **
33256577 CGAAATAAATCACCTTGAAGCATTATTTGGTTGAATTTGAATTCAAATTCGAGGTGCAAGTGCCG
1 CGAAATAAATCACCTTGAAACATTATTTGGTCAAATTTGAATTCAAATTCGAGGCACAAGTGCCG
* *
33256642 ATAAGGGTGCCTTTATATAAAAGAATGCGCAAGAGTTGACGGGGCGACCATACCATCACTAATGC
66 ATAAGGGTACCTTTATATAAAAGAATGCGCAAGAGTTGACGGGGCGACCATACCAGCACTAATGC
* ** * *
33256707 ACTGGATCCACAAAACTCTGCGGTTAACCCGTGCACGGGCAAAATGGTACAGCATGGTGACATCC
131 ACTGGATCCACAAAACTCCGAAGTTAACCCGTGCACGGGCAAAATAGTACAGCAGGGTGACATCC
* *
33256772 AGGAAGTCCTCGTGTGCATCCCTTCCATTTTATATTTCATTGAAATTTTTTTGTTTAAACAACAC
196 AGCAAGTCCTCGTGTGCATCCCTTCCATTTTATATTTCATTGAAA-TTTTTTGTTTAAACAAAAC
* * * * *
33256837 TTAACAAATTAGTTATTTGCGTTTCATGAAATATATCACTTGAAACGTTGCTTTTTCAAATTTGA
260 TTAACAAATTAGTTATTTGAGTTTCACGAAATAAATCACTTGAAACGTTGATTTGTCAAATTTGA
* * *
33256902 ATTCAAATTTGAGGATGCAGTAGTGCGATAAGGGGTAGCTTTATATAAATGGAAATACGCAAGAG
325 ATTCAAATTTGAGGATGCAG-AGGGCGATAAGGGGTAGCTTTACATAAATAGAAATACGCAAGAG
*
33256967 TTGATGGGTGCGATCATACCAGTACTAATGCTCAAAATCCCAT
389 TTGACGGGTGCGATCATACCAGTACTAATGCTCAAAATCCCAT
* *
33257010 CGAAATAAATCA-CTTGAAACGTTATTTGGTCAAATTTGAATTCAATTTCGAGGCACAAGTG-CG
1 CGAAATAAATCACCTTGAAACATTATTTGGTCAAATTTGAATTCAAATTCGAGGCACAAGTGCCG
* *
33257073 ATAAGGAGTAACC-TTATATAAGTAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTA
66 ATAAGG-GT-ACCTTTATATAA-AAGAATGCGCAAGAGTTGACGGG-GCGACCATACCAGCACTA
* ** ** * * *
33257137 ATGCACTGGATCCTATCAGAACTCCGAAGTTAA-GTGTGC-TTGGCGAGAAGTAGTGCTAGGACG
127 ATGCACTGGATCC-A-CAAAACTCCGAAGTTAACCCGTGCACGGGC-A-AAATAGTAC-AGCA-G
* *
33257200 GGTGATC-TCCCAGCAAGTCC-CTGTGTTGCA-GCCTTCCCATTTTATATTTCA-TGTAA-TTTT
186 GGTGA-CAT-CCAGCAAGTCCTC-GTG-TGCATCCCTT-CCATTTTATATTTCATTGAAATTTTT
* * *
33257260 T-TTTAAA-AAAAGTTTAACTAATTAGTTATTTGAGTTT-ACGAAATAAATCGCTTGAAACGTT-
246 TGTTTAAACAAAA-CTTAACAAATTAGTTATTTGAGTTTCACGAAATAAATCACTTGAAACGTTG
* *
33257321 ATTTGTCGAATTTGAATTCAAATTTGAGGCT-CA-AGGGCGATAAGGGGTAGCTTTTACATAAAT
310 ATTTGTCAAATTTGAATTCAAATTTGAGGATGCAGAGGGCGATAAGGGGTAGC-TTTACATAAAT
* ** *
33257384 AG-ATTGTGCAAGAGTTGACGATGTGCGAT
374 AGAAATACGCAAGAGTTGACG-GGTGCGAT
33257413 GCACCAGCAC
Statistics
Matches: 339, Mismatches: 46, Indels: 37
0.80 0.11 0.09
Matches are distributed among these distances:
431 39 0.12
432 70 0.21
433 38 0.11
434 59 0.17
435 30 0.09
436 47 0.14
437 8 0.02
438 7 0.02
439 22 0.06
440 19 0.06
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (431 bp):
CGAAATAAATCACCTTGAAACATTATTTGGTCAAATTTGAATTCAAATTCGAGGCACAAGTGCCG
ATAAGGGTACCTTTATATAAAAGAATGCGCAAGAGTTGACGGGGCGACCATACCAGCACTAATGC
ACTGGATCCACAAAACTCCGAAGTTAACCCGTGCACGGGCAAAATAGTACAGCAGGGTGACATCC
AGCAAGTCCTCGTGTGCATCCCTTCCATTTTATATTTCATTGAAATTTTTTGTTTAAACAAAACT
TAACAAATTAGTTATTTGAGTTTCACGAAATAAATCACTTGAAACGTTGATTTGTCAAATTTGAA
TTCAAATTTGAGGATGCAGAGGGCGATAAGGGGTAGCTTTACATAAATAGAAATACGCAAGAGTT
GACGGGTGCGATCATACCAGTACTAATGCTCAAAATCCCAT
Found at i:33257528 original size:288 final size:290
Alignment explanation
Indices: 33257010--33258302 Score: 1292
Period size: 288 Copynumber: 4.5 Consensus size: 290
33257000 AAAATCCCAT
* * * *
33257010 CGAAATAAATCACTTGAAACGTTATTTGGTCAAATTTGAATTCAATTTCGAGGCACAAGTGCGAT
1 CGAAATAAATCACTTGAAACGTTATTTCGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGAT
* * * *
33257075 AAGGAGTAAC-CTTATATAAGTAGAATGCGCAAGAGTTGACGGGTGCGAT-CATACCAGCACTAA
66 AAGGGGTAGCTTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATACA-ACCAGCACTAA
* * * ** * *
33257138 TGCACTGGATCCTATCAGAACTCCGAAGTTAAGTGTGCTTGGCGAGAAGTAGTGCTAGGACGGGT
130 TGCACCGGATCCCATCAGAACTCCGAAGCTAAGCATGCTTGG-GAGAAGTAGTACTAGGATGGGT
* ** * * * * *
33257203 GATCTCCCAGCAAGTCCCTGTGTTGCAGCCTTCCCATTTTATATTTCATGTAATT-TTTTTTAAA
194 GACCTCCTGGGAAATCCGTGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTATTTTTTAAA
* * *
33257267 AAAAGTTTAACTAATTAGTTATTTGAG-TTTA
259 CATAGTTTAACTAATTAGTTATTTGCGTTTTA
* * * *
33257298 CGAAATAAATCGCTTGAAACGTTATTT-GTCGAATTTGAATTCAAATTTGAGGCTCAAGGGCGAT
1 CGAAATAAATCACTTGAAACGTTATTTCGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGAT
* * * * *
33257362 AAGGGGTAGCTTTTACATAAATAGATTGTGCAAGAGTTGACGATGTGCGATGC-ACCAGCACTAA
66 AAGGGGTAGCTTTTATATAAATAGAATGCGCAAGAGTTGACG-GGTGCGATACAACCAGCACTAA
* * *
33257426 TACACCGGATCCCGTCAGAACTTCGAAG-TAAGCATGCTTGGCTGAG-AGTAGTACTAGGATGGG
130 TGCACCGGATCCCATCAGAACTCCGAAGCTAAGCATGCTTGG--GAGAAGTAGTACTAGGATGGG
* *
33257489 TGACCTCCTGGGAAATCTCGTGTGTTGCACCCCTCCCATTTTATAGTTCATGTAATTGTTTTCTT
193 TGACCTCCTGGGAAATC-CGTGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTATTTT-TT
* * *
33257554 AATAGATCGTTTAACTAATTAG-TATTTGTGTTTTA
256 AA-ACATAGTTTAACTAATTAGTTATTTGCGTTTTA
* * * ** *
33257589 CG-AAT-AATCACTTGAAATGTTATTTCGTCGAATTTGACTTCAAATTCAAGGCGCAAAAGGGAT
1 CGAAATAAATCACTTGAAACGTTATTTCGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGAT
* * ** * *
33257652 AAGGGGTACCCTTTATATAAAT-GAATGCGCAAGAACT-ATGGGTGC-A-AAAATTCCAGCACTA
66 AAGGGGTAGCTTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATACAA--CCAGCACTA
* * * * * * * *
33257713 TTGCACCGAAACCCATTAGAACTCCGCAGCTAAGC--GCTTGGGCAG-AGTAGCACTGGGATTGG
129 ATGCACCGGATCCCATCAGAACTCCGAAGCTAAGCATGCTTGGG-AGAAGTAGTACTAGGATGGG
* *
33257775 TGACCTCCT-GGAAAGTCC-TCGTGTTGC-CACCCTCCCGTTTTATATTTCGTGT-A-T-TTTTT
193 TGACCTCCTGGGAAA-TCCGT-GTGTTGCAC-CCCTCCCATTTTATATTTCATGTAATTATTTTT
*
33257834 TAAACATAGTTTAACTAATTAGGTATTTGCGTTTTA
255 TAAACATAGTTTAACTAATTAGTTATTTGCGTTTTA
* *
33257870 CG-AATAAATCACTTGAAACATTATTTCGTCGAATTTGAATTCAAATTCGACAGGCGCAAGTACG
1 CGAAATAAATCACTTGAAACGTTATTTCGTCGAATTTGAATTCAAATTCG--AGGCGCAAGTGC-
* * *
33257934 GTTAA-GGGTAG-TCTTTATATAAATAGAGTGCGCAGGAGTTGACGGGTGCGA-ACATACCAGCA
63 GATAAGGGGTAGCT-TTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATACA-ACCAGCA
* * * * *
33257996 CTAATGTACCGG-TTCCATCAGAACTCCGCAG-TAAGCATGCTTAAGGTAGAAGTTGTACTA-GA
126 CTAATGCACCGGATCCCATCAGAACTCCGAAGCTAAGCATGCTT--GGGAGAAGTAGTACTAGGA
*
33258058 TGGGTGACCTCCTGGGAAGTCCTCGTGTTGTTGCACCCCTCCCATTTTATATTT-ATGTAATTTA
189 TGGGTGACCTCCTGGGAAAT-C-CGTG-TGTTGCACCCCTCCCATTTTATATTTCATGTAA-TTA
*
33258122 TTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTTA
250 TTTTTTAAACATAGTTTAACTAATTAGTTATTTGCG-TTTTA
* *
33258164 CGAAATAAATCACTTGAAAACGTATATTTGGAT-GAATTTGAATTCAAATTCGAGGC-CAAGTAC
1 CGAAATAAATCACTTG-AAACGT-TATTTCG-TCGAATTTGAATTCAAATTCGAGGCGCAAGTGC
* * * *
33258227 GATAA--GGCAGCTTTTATATAAATAGAATGCACAAGAGTTGACGGGTGTGAT-CATACCAGCAA
63 GATAAGGGGTAGCTTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATACA-ACCAGCAC
*
33258289 TAATGCGCCGGATC
127 TAATGCACCGGATC
33258303 TGTAACAGCC
Statistics
Matches: 835, Mismatches: 119, Indels: 97
0.79 0.11 0.09
Matches are distributed among these distances:
280 17 0.02
281 21 0.03
282 43 0.05
283 1 0.00
284 32 0.04
285 65 0.08
286 55 0.07
287 108 0.13
288 171 0.20
289 50 0.06
290 89 0.11
291 23 0.03
292 58 0.07
293 40 0.05
294 14 0.02
295 17 0.02
296 5 0.01
297 25 0.03
298 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (290 bp):
CGAAATAAATCACTTGAAACGTTATTTCGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGAT
AAGGGGTAGCTTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATACAACCAGCACTAAT
GCACCGGATCCCATCAGAACTCCGAAGCTAAGCATGCTTGGGAGAAGTAGTACTAGGATGGGTGA
CCTCCTGGGAAATCCGTGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTATTTTTTAAACA
TAGTTTAACTAATTAGTTATTTGCGTTTTA
Found at i:33259150 original size:30 final size:30
Alignment explanation
Indices: 33259107--33259165 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
33259097 AATTTATGGG
* *
33259107 CCTAAGGGTAAAATGGTCATTTTGTCAAAT
1 CCTAAGGGCAAAATGGTCATTTTGCCAAAT
*
33259137 CCTAGGGGCAAAATGGTCATTTTGCCAAA
1 CCTAAGGGCAAAATGGTCATTTTGCCAAA
33259166 AATGTAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (30 bp):
CCTAAGGGCAAAATGGTCATTTTGCCAAAT
Found at i:33259881 original size:45 final size:43
Alignment explanation
Indices: 33259666--33259933 Score: 171
Period size: 45 Copynumber: 5.9 Consensus size: 43
33259656 GAGTTATTTG
* *
33259666 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTA
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CACGA-GA
* * * * *
33259710 TTAGAGCCTGTGTAAGCCATGTCTAGGACATGACATCGGCATGAGA
1 -T-GTGCCAGTGTAAGACATGTCTGGGACATG-CATCGGCACGAGA
* * * * *
33259756 CGAGCGCTAGTGTAAGACATGTCTGGGACATGCATTGCCTCGAGA
1 TGTGC-C-AGTGTAAGACATGTCTGGGACATGCATCGGCACGAGA
* * * * *
33259801 TGTAAGCCAGTGTGAGACATATC-CGAACATACATCGGCTACGAGA
1 TGT--GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACGAGA
* *
33259846 TGTGTCAGTGTAAGACCATGTCTGGGACATGCATCGGCACGGATA
1 TGTGCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCAC-GAGA
* *
33259891 TGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 TGT----GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
33259934 CTCAATTTTG
Statistics
Matches: 172, Mismatches: 35, Indels: 27
0.74 0.15 0.12
Matches are distributed among these distances:
43 10 0.06
44 21 0.12
45 51 0.30
46 49 0.28
47 9 0.05
49 24 0.14
50 8 0.05
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (43 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACGAGA
Found at i:33259961 original size:50 final size:47
Alignment explanation
Indices: 33259851--33259979 Score: 136
Period size: 49 Copynumber: 2.6 Consensus size: 47
33259841 CGAGATGTGT
**
33259851 CAGTGTAAGACCATGTCTGGGACATGCATCGGCACGGATATGTGAGAG
1 CAGTGTAAGACCATGTCT-GGACATGCATCGGCACCAATATGTGAGAG
* *
33259899 CTAGTGTAAGACCATGTCTAGGACATGGCATCGGC-CTCAAT-TTTGATAGG
1 C-AGTGTAAGACCATGTCT-GGACAT-GCATCGGCAC-CAATATGTGAGA-G
33259949 CAGTGTTAAGACCATGTCTGAGACATGCATC
1 CAGTG-TAAGACCATGTCTG-GACATGCATC
33259980 AGCATTATAC
Statistics
Matches: 70, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
48 1 0.01
49 39 0.56
50 30 0.43
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGACATGCATCGGCACCAATATGTGAGAG
Found at i:33262406 original size:286 final size:281
Alignment explanation
Indices: 33261008--33266366 Score: 3304
Period size: 293 Copynumber: 18.8 Consensus size: 281
33260998 AAATTACTTA
* *
33261008 TTAT-TTTCATGTAATTTATTTTTAAATATAGTTTAAGTAATTTAGTTATTGCAT-TTTACGAAA
1 TTATATTTCATGTAATTT-TTTTTAAACATAGTTTAACTAA-TTAGTTATTG--TGTTTACGAAA
* * *
33261071 TAAATTACTTGAAACGTTATTTTACGTCGAATTGAATTCAAATTCGAGGCGCAAGTGCGATAA-G
62 TAAATCACTTGAAACGTTA-TTT-GGTCGAATTGAATTCAAATTTGAGGCG-AAGTGCGATAAGG
** * * * * *
33261135 GGTAGCCTTTATTTAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATTTCCAGTACTAATGTA
124 GGTAGCC-TTACATAAATAGATTGCGCAAGAGTTGACGGGTGC-ATGA--TACAGCACTAATGCA
* * *
33261200 CCGGATCTCATCAGAACTCCGCAGTTAAGCATGCTTGGGCT-AGAGTTGTACTCGGATGGGTGAC
185 CC-GATC-CATCAGAACTCCGCAGTTAAGCGTGCTTGGG-TGAGAGTAGTACTAGGATGGGTGAC
* * *
33261264 CTCCTGGGAAGTCCTCGGGTTGCACCCTTCCCCTT
247 CTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* *
33261299 TTATATTTCATGTAATTTTTTTTAAACATTGTTTAACTAATTAGTTATTTTGTGATTTATGAAAT
1 TTATATTTCATGTAATTTTTTTTAAACATAGTTTAACTAATTAGTTA--TTGTG-TTTACGAAAT
* * ** *
33261364 AAATCGCTTGAAAATGTTACCTGGTCGAATTTTGAATTCAAATTTGAGGCGCAAGTGCGATATGG
63 AAATCACTTG-AAACGTTATTTGGTCGAA--TTGAATTCAAATTTGAGGCG-AAGTGCGATAAGG
* *
33261429 GGTAGCCTTTACATAAATGGATTGCGCAAGAGTTGACGGGTTAG-ATTATACCAGCACTAATGCA
124 GGTAGCC-TTACATAAATAGATTGCGCAAGAGTTGACGGG-T-GCATGATA-CAGCACTAATGCA
* * * *
33261493 CCGAATCCCATCAAAACTCCGCAGTTAAGCATGCTTGGCT-AGAGTAGTACTAGGAT-GGTGGCC
185 CCG-AT-CCATCAGAACTCCGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACC
33261556 TCCT-GGAAGTCCTCGTGTTGCA-CCCT-CCATT
248 TCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * ** * *
33261587 ATATATTTCGTGTAATTTTTTTTTTTTAAACATTTTTTAACTATTTAGTTATTTGCGTTATACGA
1 TTATATTTCATGTAA----TTTTTTTTAAACATAGTTTAACTAATTAGTTA-TTGTGTT-TACGA
* * * **
33261652 AATAAATCGCTTGAAATGTTATTTGGTCGAATTTGAATTC-AATTTGAGGAC-ACGTATGATAA-
60 AATAAATCACTTGAAACGTTATTTGGTCGAA-TTGAATTCAAATTTGAGG-CGAAGTGCGATAAG
* * * * *
33261714 GGGTAGCTTTTAC-TATAATAGATTGC-CAAGAGTTGATGGTTGCGATGCTTACTAGAACTAATG
123 GGGTAGC-CTTACATA-AATAGATTGCGCAAGAGTTGACGGGTGC-ATG-ATAC-AGCACTAATG
* * * * * **
33261777 CACCAGATCCCATCAGAACTCCGAAGGTAAAGCATGCTTGGCTGAGAGTAGTTA-TTGTTTGGGT
183 CACC-GAT-CCATCAGAACTCCGCA-GTTAAGCGTGCTTGGGTGAGAGTAG-TACTAGGATGGGT
* **
33261841 GACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCGATATT
244 GACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC-CCATT
* * * *
33261880 TTATAATTTCATGTAATTTTTTTT-AACATCGTTTAACTAATTAGTTATTTGCGTTTTTCGCAAT
1 TTAT-ATTTCATGTAATTTTTTTTAAACATAGTTTAACTAATTAGTTA-TTGTG-TTTACGAAAT
* * * *
33261944 AAATCA-TTGAAAACGTTA-TTGATCAAATTTGAATTCAAATTCGAGGCACAAGTGCGATAAGGG
63 AAATCACTTG-AAACGTTATTTGGTCGAA-TTGAATTCAAATTTGAGGC-GAAGTGCGATAAGGG
* * * *
33262007 GTAGCCTT-TATATATAGATTGCGCAAGAGTTGACGGGTTAG-ATTATACTAGC-GTAATGCACC
125 GTAGCCTTACATAAATAGATTGCGCAAGAGTTGACGGG-T-GCATGATAC-AGCACTAATGCACC
* * * *
33262069 AGATCCCATCA-AACTCCGTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGATCAC
187 -GAT-CCATCAGAACTCCGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACCTC
*
33262133 CTGGGAAGTCCTCGTGTTGCACCTCTCCCATT
250 CTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* *
33262165 TTATATTTCATGTAATTTTTTTTATTTTTAAACATAGTTTAATTAATTAGTTATTGTGTTTATTG
1 TTATATTTCATGTAA-----TTT-TTTTTAAACATAGTTTAACTAATTAGTTATTGTGTTTA-CG
* *
33262230 AAAT-AATCGCTTGAAACATTACTTTGGTCGAATTGAATTCAAATTTGAGGCGAAGTGCG-TAAG
59 AAATAAATCACTTGAAACGTTA-TTTGGTCGAATTGAATTCAAATTTGAGGCGAAGTGCGATAAG
* * *
33262293 GGGTAGCCTTACATAAATAGTATTGCGCAAGAGTTGACAGGTGCATGATA-AGCTCTAATGCATC
123 GGGTAGCCTTACATAAATAG-ATTGCGCAAGAGTTGACGGGTGCATGATACAGCACTAATGCACC
* ** **
33262357 GATCCATTAGAACTTTGCAGTTAAATGTGCTTGGGTGAGA-TAGTACTAGGAT--GTGACCTCCT
187 GATCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCCT
* *
33262419 AGGAAGTCCTCGTGTTGGCACCCCTCTCATT
252 GGGAAGTCCTCGTGTT-GCACCCCTCCCATT
* * *
33262450 TTATA-TT-ATGTAA---TTTTT-AACATCGTTTAACTTAATTAGTTATTAGCGTTTACGAAAAA
1 TTATATTTCATGTAATTTTTTTTAAACATAGTTTAAC-TAATTAGTTATT-GTGTTTACG-AAAT
* * * * * *
33262509 AAATCACTTGAAACG--ATTTGCTGTTGATGTTGATTTCTAATTCGAGGCACAAGTGCGATAA-G
63 AAATCACTTGAAACGTTATTTG--GTCGA-ATTGAATTCAAATTTGAGGC-GAAGTGCGATAAGG
* * * *
33262571 GGTAGCTTTTATATAAATAGATTGCCGCAAGAGTTGACGAGTTAG-ATTATACCAGCACTAATGC
124 GGTAGC-CTTACATAAATAGATTG-CGCAAGAGTTGACG-GGT-GCATGATA-CAGCACTAATGC
* * * *
33262635 ACCCGATCCATCAAAACTCCGCAGTTAAGCGTGCTT-GGCGAGAGCAGTACTAGGATGGGTGATC
184 A-CCGATCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACC
*
33262699 TCTTGGGAAG-CCTCGTGTTGCACCCCTCCCATT
248 TCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
*** * * * * *
33262732 TTATA-TTCATGT-ATTTTTTTT--GTTTGGTTAAAC-AGTTAACTTAAATAT-TG-TCACGAAA
1 TTATATTTCATGTAATTTTTTTTAAACATAGTTTAACTAATT-AGTT--AT-TGTGTTTACGAAA
* * * *
33262790 -AAA--ACTTGAAATGTTATCTTGGTCGAAATCAATTC-AATTTGAGGCGCAAG-GCGAAAAGGG
62 TAAATCACTTGAAACGTTAT-TTGGTCGAATTGAATTCAAATTTGAGGCG-AAGTGCGATAAGGG
*
33262850 GTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGTGTGCGATGATACCAGCACTAATGGCAC
125 GTAGCC-TTACATAAATAGATTGCGCAAGAGTTGACGGGTGC-ATGATA-CAGCACTAAT-GCAC
* * * * * ** *
33262915 CGATTCCATTAGAACTACACAGTTAAGCATGCTT-AGCAAGAGTAGTACT-GGACGGGTGA-CT-
186 CGA-TCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACCTC
** *
33262976 CTGTAAATTCCTCGTG--G-ACCCCTCCCATT
250 CTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * *
33263005 TTATA-TTCGA-G-ATATTTATTTT--ACATCGTTTAACTAATTAG-TATTTGCGTTTTATGAAA
1 TTATATTTC-ATGTA-ATTTTTTTTAAACATAGTTTAACTAATTAGTTA-TTGTG-TTTACGAAA
* * * * *
33263064 TAAAACACTTGAAACCTTATTTGGTTGAATTGAATTCAAATTCGAGGCGAAAGTTTCGATAAGGG
62 TAAATCACTTGAAACGTTATTTGGTCGAATTGAATTCAAATTTGAGGCG-AAG-TGCGATAAGGG
* * * * * * *
33263129 ATAGCCTTTATATAAATATAATGCGCAAGA-TTGACAGGTGCGATCATACAAGCACTGATGCACT
125 GTAGCC-TTACATAAATAGATTGCGCAAGAGTTGACGGGTGC-ATGATAC-AGCACTAATGCAC-
* * * * * * * *
33263193 CGAACCCATCAGAACCCCGTAGTTAAGCGTGCCTGGG-CACAGTTGTACT--GATGTGTGACCTC
186 CG-ATCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACCTC
* *
33263255 CT-GGAAGTTCTCATG-TGCACCCCT-CC--T
250 CTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * * * *
33263282 ATATA-TTCATGTAATTATTTGTAAAACATAGTTTAAGTAATTACTTATTTGCGTTTTACGAAAT
1 TTATATTTCATGTAATT-TTTTTTAAACATAGTTTAACTAATTAGTTA-TTGTG-TTTACGAAAT
* * *
33263346 AAATTACTTGAAATGTTA-TTAGTCGAATTTGAATTCAAATTTGAGGCGGCAAGTGCGATAA-GG
63 AAATCACTTGAAACGTTATTTGGTCGAA-TTGAATTCAAATTTGAGGC-G-AAGTGCGATAAGGG
* * * * * * * * *
33263409 GTAGCCTTTATATGAATAGAATGTGCGAGAGTTGATTGGGTGCGATCATACCAGTACTAATGTAC
125 GTAGCC-TTACATAAATAGATTGCGCAAGAGTTGA-CGGGTGC-ATGATA-CAGCACTAATGCAC
* ** * *
33263474 CGAATCCACCAGAACT-C-CAAAT-AGCGTGCTTTGGGCT-AGAGTTGTACTCGGATGGGTGACC
186 CG-ATCCATCAGAACTCCGCAGTTAAGCGTGC-TTGGG-TGAGAGTAGTACTAGGATGGGTGACC
*
33263535 TCCT-GGAAGTCCTCGTG-TGCACCACTCCCA--
248 TCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33263565 -TA-ATTTCA-GTAA-----TTTAAACATCG-TT-ACGTAATTA-TTATTTTCATTTTAC-AAAT
1 TTATATTTCATGTAATTTTTTTTAAACATAGTTTAAC-TAATTAGTTATTGT--GTTTACGAAAT
* ** * *
33263618 AAATCACTTG-AACTGTTATTTTGGTCAAATTTGAATTTCCTATTCGAGGGCGCAAATGCGATAA
63 AAATCACTTGAAAC-GTTA-TTTGGTCGAA-TTGAA-TTCAAATTTGA-GGCG-AAGTGCGATAA
* * * *
33263682 GGGGTAGCCTTTTA-ATAAATAGAGTGCACGAGAGTTGACGGGTTAG-ATTATACCAGCACTAAT
122 GGGGTAGCC--TTACATAAATAGATTGCGCAAGAGTTGACGGG-T-GCATGATA-CAGCACTAAT
** *
33263745 GCACCGAATCCCATCA-AATCTCTACAGTTAAGCGTGCTCTGTTGGCTATAGAGTTAGTACTAGG
182 GCACCG-AT-CCATCAGAA-CTCCGCAGTTAAGCGTGCT-TG--GG-T-GAGAG-TAGTACTAGG
* *
33263809 ATGGATGA-CTCAC-GGGAAGTCTTCGTGTTGCACCCC-CTCCA-T
238 ATGGGTGACCTC-CTGGGAAGTCCTCGTGTTGCACCCCTC-CCATT
* * *
33263851 TAATATTTCATGTAATTTGTGTGTGTTTAAAC--AGTTGAA--AATTAGTTATTTGCGTTTACGA
1 TTATATTTCATGTAA-TT-T-T-T-TTTAAACATAGTTTAACTAATTAGTTA-TTGTGTTTACGA
* * * *
33263912 AATAAATCGCTTG-AACATTATTTGG-CGAATTTTTTAATTCAAATTTGAGGCGCAAGTGTGATA
60 AATAAATCACTTGAAACGTTATTTGGTCGAA---TTGAATTCAAATTTGAGGCG-AAGTGCGATA
* * * *
33263975 AGGGGTAGCTTTTACATTAAATAGATTGCGCAAGAGTTGATGGGAGCGATGCA-CCAGCACTAAT
121 AGGGGTAGC-CTTACA-TAAATAGATTGCGCAAGAGTTGACGGGTGC-ATG-ATACAGCACTAAT
* * * *
33264039 G-ACCGGATCCCATCA-AACTCCGAAGGTAAGCGTGCTTGGCTGAGAGTAGTATTAGGATGGGTG
182 GCACC-GAT-CCATCAGAACTCCGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGGTG
* **
33264102 ACCTCCTGGGAATTCCTCGTGTTGCACCCCTCTTATT
245 ACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33264139 TTATATTTCATGTAA-TTTTTTTAAACATTG-TTAACTAATTAGTTATTTGCGTTTTTCGAAATA
1 TTATATTTCATGTAATTTTTTTTAAACATAGTTTAACTAATTAGTTA-TTGTG-TTTACGAAATA
* * * * *
33264202 AATCACTTG-AACGTT-TATTGATCAAATTTGAATTCAAATTCGAGGCACAAGTG-TATAAGGGG
64 AATCACTTGAAACGTTAT-TTGGTCGAA-TTGAATTCAAATTTGAGGC-GAAGTGCGATAAGGGG
* * * *
33264264 TAGCCTTTATATAAATAGA---CGCAAGAG-T-ACGGGTTAG-ATTATACTAACCCTAATGCACC
126 TAGCC-TTACATAAATAGATTGCGCAAGAGTTGACGGG-T-GCATGATAC-AGCACTAATGCACC
* * * * *
33264323 AGATCCCATCAAAAC-CC-C-GGTAAGTTCGTGCTTGGGTGAGAGCAGTACTACGATGGGT-ATC
187 -GAT-CCATCAGAACTCCGCAGTTAAG--CGTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACC
* *
33264384 TCCTGGGAAGCCCTCGTGTTGCACCGCTCCCCA-T
248 TCCTGGGAAGTCCTCGTGTTGCACCCCT-CCCATT
* * *
33264418 TTATATTTCATGTAAGTTTACTTTTAAACATTGTTTAACTAATTAGTT-TTGTGTTTTATGAAAT
1 TTATATTTCATGTAA-TTT-TTTTTAAACATAGTTTAACTAATTAGTTATTGTG-TTTACGAAAT
** * *
33264482 AAATCGTTTGAAACGTTACTTGGTC-AATTGAATTC-AATTTGAGGCGCAAGCGCGATAAGGGGT
63 AAATCACTTGAAACGTTATTTGGTCGAATTGAATTCAAATTTGAGGCG-AAGTGCGATAAGGGGT
*
33264545 AGCCTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGATACTAGCACTAATGCATCGGA
127 AGCCTTACATAAATAGATTGCGCAAGAGTTGACGGGTGC-ATGATAC-AGCACTAATGCA-CCGA
* * ** * *
33264610 TCCCATTAGAACTCTGCAAGTTAAATGTGCTT-GCTGA-A-TAAT-C-AGGTAT-GGTGACCTCC
189 T-CCATCAGAACTCCGC-AGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGG-ATGGGTGACCTCC
* * * *
33264669 T-GGAATTTTTCCTCCCGGGCCGGGTTCCAAAACCCGC-CCCCTT
251 TGGGAA---GTCCT-------CGTGTTGC---ACCC-CTCCCATT
* * * * *
33264712 TT-T-TTTCCTATCTCTTTATTTTTCGTTAAACATCGCTTAACTAATTAGTTATTTGTGTTTTAC
1 TTATATTT-C-A--T-GTAATTTTT-TTTAAACATAGTTTAACTAATTAGTTA-TTGTG-TTTAC
* * * * * * * *
33264775 GAAATATATCACTTGAAACATTGTTTTGTCAAATTTGTATTCAAATTCGTA-GCGCAAGTGCAAT
58 GAAATAAATCACTTGAAACGTTATTTGGTCGAA-TTGAATTCAAATTTG-AGGCG-AAGTGCGAT
* * * * **
33264839 AA--GGAAGCCTT-CAATATAATAGA-TGTGCACGAGTTGACGGGTGCGATTATACTAGTGCT-A
120 AAGGGGTAGCCTTAC-ATA-AATAGATTGCGCAAGAGTTGACGGGTGC-ATGATAC-AGCACTAA
* * * * * *
33264899 TGCTCCAGATCCCTCCAGAACTACGCAGTTAAGCATGCTTGGGTGAGACTGGTACTAGGATGGGT
181 TGCACC-GATCCAT-CAGAACTCCGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGGT
* * * *
33264964 GACCTCCTAGGAAGTCCTGGTGTTGCGCCCCTCCTATT
244 GACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33265002 TTATATTTCATGTAATTTTTTTCAAACATCGTTTAAGTAATTAGTTA-----TTTACGAAATAAA
1 TTATATTTCATGTAATTTTTTTTAAACATAGTTTAACTAATTAGTTATTGTGTTTACGAAATAAA
* * * *
33265062 TCACTTGAATCGTTATTTGGTCGAATTTCAATTCAAATTCGAGGCGCAAGTGCGTTAAGAGGG-A
66 TCACTTGAAACGTTATTTGGTCGAA-TTGAATTCAAATTTGAGGCG-AAGTGCGATAAG-GGGTA
* * * * * *
33265126 GCCCTA-ATATAAGTAGATTGCGTAAAAATTGACGGGTATG-ATCATACCTA-CAGTAATGCACC
128 GCCTTACATA-AA-TAGATTGCGCAAGAGTTGACGGG--TGCATGATA-C-AGCACTAATGCACC
* * * * *
33265188 GGATCCCATCAGAACTCCACAGTTAAGCGTGCTCGGGCGAGAGTAGTACAAGGATGGGTAACCTC
187 -GAT-CCATCAGAACTCCGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACCTC
* *
33265253 TTGGGAAGTCATCGTGTTGCACCCC-CCCATT
250 CTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * * *
33265284 TTATATTTCGTGTAAATTTTTTTAAACATAGTTTAAGTAATTAGTTATTTGTGTTTTACAAAAGA
1 TTATATTTCATGTAATTTTTTTTAAACATAGTTTAACTAATTAGTTA-TTGTG-TTTACGAAATA
* * * * ** * * *
33265349 AATCCCTCGAAATGTTATTTCGTCGAATTTGAATTCAAATACGATGCGCAAGTGTGATGAGGGGT
64 AATCACTTGAAACGTTATTTGGTCGAA-TTGAATTCAAATTTGAGGCG-AAGTGCGATAAGGGGT
* * * ** * * *
33265414 AGCCTT-TATAAAAATATT-CTGCGATCAGTTGACGGGTGTGATCATAC-CCTTACTAATGCACC
127 AGCCTTACATAAATAGATTGC-GC-AAGAGTTGACGGGTG-CATGATACAGC--ACTAATGCACC
* * * * *
33265476 GGATCCCATCAGTACTCCGCAATTAAGCATGCTTGGGCGAG-GATAGTACTGGGATGGGTGACCT
187 -GAT-CCATCAGAACTCCGCAGTTAAGCGTGCTTGGGTGAGAG-TAGTACTAGGATGGGTGACCT
*
33265540 CCTGGGAAGTCCTTGTGTTGCACCCCTCCCATT
249 CCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33265573 TTATGTTTCATGTAATTTTTTTCTTTAAACATTGTTTAACTAATTAGTTATTTTCGTTTTACGAA
1 TTATATTTCATGTAA--TTTTT-TTTAAACATAGTTTAACTAATTAGTTATTGT-G-TTTACGAA
* * ** * *
33265638 ATAAATCACTTGAAATGTTATTTAGTCGAATTTGAATTCAAATTCAAGGTGCAAGTGCGATAAAG
61 ATAAATCACTTGAAACGTTATTTGGTCGAA-TTGAATTCAAATTTGAGGCG-AAGTGCGATAAGG
** * * * ** * * *
33265703 TCTAGCCTTTATATAAACAGAATGCGCAAGAACTGATGTGTGCGATCATACTAGCACTAATGCAT
124 GGTAGCC-TTACATAAATAGATTGCGCAAGAGTTGACGGGTGC-ATGATAC-AGCACTAATGCA-
* * ** * * * * * * *
33265768 CGGATCCCATCAGAAGTTTGCAATTAAGAGTGCTTGGGCGAGAGTTGT-CTTTGGTTGGTTGACC
185 CCGAT-CCATCAGAACTCCGCAGTTAAGCGTGCTTGGGTGAGAGTAGTAC-TAGGATGGGTGACC
* *
33265832 T-CTGGGAAGTCCTCGTGTTGAACCCCTCCAATT
248 TCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33265865 TTATATTTCATGTAA------CT-AA-TTAG-TT-A-T--TT-G----TGT-TTTACGAAACAAA
1 TTATATTTCATGTAATTTTTTTTAAACATAGTTTAACTAATTAGTTATTGTGTTTACGAAATAAA
* * *
33265911 TCATTTGAAATGTTATTTGGTCAAATTTGAATTCAAATTCT-AGTTGC-AAGTGCGATAAGGGGT
66 TCACTTGAAACGTTATTTGGTCGAA-TTGAATTCAAATT-TGAG--GCGAAGTGCGATAAGGGGT
* * * *
33265974 AGCCTTTACAGAAATAGATTGCGTAAGAGTTGACGGGTGCAATCATACCAGCACAAATGCACCTG
127 AGCC-TTACATAAATAGATTGCGCAAGAGTTGACGGGTGC-ATGATA-CAGCACTAATGCACC-G
* * * * * *
33266039 ATCCCATTAGAACTTCGTAGTTAAGCATGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTT
188 AT-CCATCAGAACTCCGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCCT
* * * *
33266104 AGGAAGTGCTCGTGTTGCACCCTTCCCATA
252 GGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33266134 ATATATTTCATGTAATTTTTTTCTTTAAACATCGTTTAACTAATTAGTTATT-TACATTTTACGA
1 TTATATTTCATGTAA--TTTTT-TTTAAACATAGTTTAACTAATTAGTTATTGT---GTTTACGA
** * * ** **
33266198 AATAAAT-ATCTTGAAATTTTATTTGGTCAAATTTAAATTCAAATTCAAGGCGCAAGACCGATAA
60 AATAAATCA-CTTGAAACGTTATTTGGTCGAA-TTGAATTCAAATTTGAGGCG-AAGTGCGATAA
* * * ** ** * * * * *
33266262 GGGGTAGCCTATATATACATAGAATGCATAAGAACTGATGGGTCCGATTATACCAGCACTATTGT
122 GGGGTAGCCT-TACATAAATAGATTGCGCAAGAGTTGACGGGTGC-ATGATA-CAGCACTAATGC
* *
33266327 ACCGAATCCCATCTGAACTGCC-CAGTTAAGAGTGCTTGGG
184 ACCG-AT-CCATCAGAACT-CCGCAGTTAAGCGTGCTTGGG
33266367 CAAGTGCGAT
Statistics
Matches: 4049, Mismatches: 654, Indels: 728
0.75 0.12 0.13
Matches are distributed among these distances:
267 1 0.00
268 161 0.04
269 41 0.01
270 1 0.00
271 6 0.00
272 21 0.01
273 46 0.01
274 64 0.02
275 81 0.02
276 94 0.02
277 122 0.03
278 198 0.05
279 216 0.05
280 157 0.04
281 155 0.04
282 253 0.06
283 148 0.04
284 148 0.04
285 108 0.03
286 206 0.05
287 109 0.03
288 235 0.06
289 222 0.05
290 161 0.04
291 120 0.03
292 243 0.06
293 327 0.08
294 110 0.03
295 43 0.01
296 47 0.01
297 37 0.01
298 56 0.01
299 53 0.01
300 19 0.00
301 21 0.01
302 15 0.00
303 4 0.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (281 bp):
TTATATTTCATGTAATTTTTTTTAAACATAGTTTAACTAATTAGTTATTGTGTTTACGAAATAAA
TCACTTGAAACGTTATTTGGTCGAATTGAATTCAAATTTGAGGCGAAGTGCGATAAGGGGTAGCC
TTACATAAATAGATTGCGCAAGAGTTGACGGGTGCATGATACAGCACTAATGCACCGATCCATCA
GAACTCCGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC
TCGTGTTGCACCCCTCCCATT
Found at i:33265669 original size:581 final size:576
Alignment explanation
Indices: 33261008--33271039 Score: 5509
Period size: 578 Copynumber: 17.3 Consensus size: 576
33260998 AAATTACTTA
* * * *
33261008 TTAT-TTTCATGTAA-TTTATTTTTAAATATAGTTTAAGTAATTTAGTTA-TTGCATTTTACGAA
1 TTATATTTCATGTAATTTTTTTTTTAAACATAGTTTAACTAA-TTAGTTATTTGCGTTTTACGAA
* * * *
33261070 ATAAATTACTTGAAACGTTATTTTACGTCGAA-TTGAATTCAAATTCGAGGCGCAAGTGCGATAA
65 ATAAATCACTTGAAATGTTA-TTT-GGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAA
* * * * * *
33261134 GGGTAGCCTTTATTTAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATTTCC-AGTACTAATG
128 GGGGAGCCTTAATAT-AATAGATTGCGCAAGAGTTGACGGGTGCGATCA-TACCTAGCACTAATG
* * * * * * *
33261198 TACCGGATCTCATCAGAACTCCGCAGTTAAGCATGCTTGGGCTAGAGTTGTACTCGGATGGGTGA
191 CACCGGATCCCATCAGAACTCCACAGTTAAGCGTGC-TGGGCGAGAGTAGTACTAGGATGGGTGA
*
33261263 CCTCCTGGGAAGTCCTCGGGTTGCACCCTTCCCC-TTTTATATTTCATGTAATTTTTTTTAAACA
255 CCTCCTGGGAAGTCCTCGTGTTGCACCC--CCCCATTTTATATTTCATGTAA-TTTTTTTAAACA
* * * * * **
33261327 TTGTTTAACTAATTAGTTATTTTGTGATTTATGAAATAAATCGCTTGAAAATGTTACCTGGTCGA
317 TCGTTTAACTAATTAGTTA-TTTGTGTTTTACGAAATAAATCACTTG-AAACGTTATTTGGTC-A
* * * * *
33261392 ATTTTGAATTCAAATTTGAGGCGCAAGTGCGATATGGGGTAGCCTTTACATAAATGGATTGCGCA
379 AATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAAT-AATTGCG-A
*
33261457 AGAGTTGACGGGTTAGATTATACCAGCACTAATGCACC-GAATCCCATCAAAACTCCGCAGTTAA
442 AGAGTTGACGGGTTAGATTATACCAGCACTAATGCACCAG-ATCCCATCAGAACTCCGCAGTTAA
* * *
33261521 GCATGCTT-GGCTAGAGTAGTACTAGGAT-GGTGGCCTCCT-GGAAGTCCTCGTGTTGCA-CCCT
506 GCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCT
33261582 -CCATT
571 CCCATT
* * ** * *
33261587 ATATATTTCGTGTAATTTTTTTTTTTTAAACATTTTTTAACTATTTAGTTATTTGCGTTATACGA
1 TTATATTTCATGTAA--TTTTTTTTTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGA
* * * **
33261652 AATAAATCGCTTGAAATGTTATTTGGTCGAATTTGAATTC-AATTTGAGG-ACACGTATGATAAG
64 AATAAATCACTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAG
* * * * * * *
33261715 GGTAGCTTTTACTATAATAGATTGC-CAAGAGTTGATGGTTGCGATGCTTA-CTAGAACTAATGC
129 GGGAGC-CTTAATATAATAGATTGCGCAAGAGTTGACGGGTGCGAT-CATACCTAGCACTAATGC
* * * * * **
33261778 ACCAGATCCCATCAGAACTCCGA-AGGTAAAGCATGCTTGGCTGAGAGTAGTTA-TTGTTTGGGT
192 ACCGGATCCCATCAGAACTCC-ACA-GTTAAGCGTGCTGGGC-GAGAGTAG-TACTAGGATGGGT
* ** *
33261841 GACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCGATATTTTATAATTTCATGTAATTTTTTTTAA
253 GACCTCCTGGGAAGTCCTCGTGTTGCACCCC-C-CCATTTTAT-ATTTCATGTAATTTTTTTAAA
* * * *
33261906 CATCGTTTAACTAATTAGTTATTTGCGTTTTTCGCAATAAATCA-TTGAAAACGTTA-TTGATCA
315 CATCGTTTAACTAATTAGTTATTTGTGTTTTACGAAATAAATCACTTG-AAACGTTATTTGGTCA
*
33261969 AATTTGAATTCAAATTCGAGGCACAAGTGCGATAAGGGGTAGCCTTTATAT--ATAGATTGCGCA
379 AATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATA-ATTGCG-A
* * *
33262032 AGAGTTGACGGGTTAGATTATACTAGC-GTAATGCACCAGATCCCATCA-AACTCCGTAGTTAAG
442 AGAGTTGACGGGTTAGATTATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAG
* * *
33262095 CGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGATCACCTGGGAAGTCCTCGTGTTGCACCTCTC
507 CGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
33262160 CCATT
572 CCATT
* *
33262165 TTATATTTCATGTAATTTTTTTTATTTTTAAACATAGTTTAATTAATTAGTTA-TTGTG-TTTAT
1 TTATATTTCATGTAA---TTTTT-TTTTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTA-
* * **
33262228 TGAAAT-AATCGCTTGAAACATTACTTTGGTCGAA-TTGAATTCAAATTTGAGGCG-AAGTGCG-
61 CGAAATAAATCACTTGAAATGTTA-TTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGA
* * *
33262289 TAAGGGGTAGCCTTACATA-AATAGTATTGCGCAAGAGTTGACAGGTGC-ATGATA---AGCTCT
125 TAAGGGG-AGCCTTA-ATATAATAG-ATTGCGCAAGAGTTGACGGGTGCGATCATACCTAGCACT
* * *** ** *
33262349 AATGCATC-GAT-CCATTAGAACTTTGCAGTTAAATGTGCTTGGGTGAGA-TAGTACTAGGAT--
187 AATGCACCGGATCCCATCAGAACTCCACAGTTAAGCGTGC-TGGGCGAGAGTAGTACTAGGATGG
* *
33262409 GTGACCTCCTAGGAAGTCCTCGTGTTGGCACCCCTCTCATTTTATA-TT-ATGTAA--TTTTT-A
251 GTGACCTCCTGGGAAGTCCTCGTGTT-GCACCCC-CCCATTTTATATTTCATGTAATTTTTTTAA
* * *
33262469 ACATCGTTTAACTTAATTAGTTATTAGCG-TTTACGAAAAAAAATCACTTGAAACG--ATTTGCT
314 ACATCGTTTAAC-TAATTAGTTATTTGTGTTTTACG-AAATAAATCACTTGAAACGTTATTTG--
** * * * *
33262531 GT-TGATGTTGATTTCTAATTCGAGGCACAAGTGCGATAA-GGGTAGCTTTTATATAAATAGATT
375 GTCAAAT-TTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATA-ATT
* * *
33262594 GCCGCAAGAGTTGACGAGTTAGATTATACCAGCACTAATGCACCCGAT-CCATCAAAACTCCGCA
438 G-CG-AAGAGTTGACGGGTTAGATTATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCA
* * *
33262658 GTTAAGCGTGCTT-GGCGAGAGCAGTACTAGGATGGGTGATCTCTTGGGAAG-CCTCGTGTTGCA
501 GTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCA
33262721 CCCCTCCCATT
566 CCCCTCCCATT
* *
33262732 TTATA-TTCATGTATTTTTTTTGTTTGGTTAAAC--AG-TTAACTTAA--A--TA-TT--G--TC
1 TTATATTTCATGTA--ATTTTT-TTT--TTAAACATAGTTTAAC-TAATTAGTTATTTGCGTTTT
* *
33262784 ACGAAA-AAA--ACTTGAAATGTTATCTTGGTCGAA-ATCAATTC-AATTTGAGGCGCAAG-GCG
60 ACGAAATAAATCACTTGAAATGTTAT-TTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCG
* * *
33262843 AAAAGGGGTAGCCTTTACATA-AATAGATTGCGCAAGAGTTGACGTGTGCGATGATACC-AGCAC
124 ATAAGGGG-AGCC-TTA-ATATAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCTAGCAC
* * * * ** * *
33262906 TAATGGCACC-GATTCCATTAGAACTACACAGTTAAGCATGCTTAGCAAGAGTAGTACT-GGACG
186 TAAT-GCACCGGATCCCATCAGAACTCCACAGTTAAGCGTGCTGGGCGAGAGTAGTACTAGGATG
** *
33262969 GGTGA-CT-CTGTAAATTCCTCGTG--G-ACCCCTCCCATTTTATA-TTCGA-G-ATATTTATTT
250 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCC-CCCATTTTATATTTC-ATGTA-ATTT-TTT
* * * *
33263026 T--ACATCGTTTAACTAATTAG-TATTTGCGTTTTATGAAATAAAACACTTGAAACCTTATTTGG
311 TAAACATCGTTTAACTAATTAGTTATTTGTGTTTTACGAAATAAATCACTTGAAACGTTATTTGG
** * * * *
33263088 TTGAA-TTGAATTCAAATTCGAGGCGAAAGTTTCGATAAGGGATAGCCTTTATATAAATATAATG
376 TCAAATTTGAATTCAAATTCGAGGCGCAAG-TGCGATAAGGGGTAGCCTTTATATAAATA-ATTG
* ** * * * * * *
33263152 CGCAAGA-TTGACAGGTGCGATCATACAAGCACTGATGCACTC-GAACCCATCAGAACCCCGTAG
439 CG-AAGAGTTGACGGGTTAGATTATACCAGCACTAATGCAC-CAGATCCCATCAGAACTCCGCAG
* * * * * *
33263215 TTAAGCGTGCCTGGGC-ACAGTTGTACT--GATGTGTGACCTCCT-GGAAGTTCTCATG-TGCAC
502 TTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCAC
33263275 CCCT-CC--T
567 CCCTCCCATT
* * * * * *
33263282 ATATA-TTCATGTAA-TTATTTGTAAAACATAGTTTAAGTAATTACTTATTTGCGTTTTACGAAA
1 TTATATTTCATGTAATTTTTTTTTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGAAA
* *
33263345 TAAATTACTTGAAATGTTA-TTAGTCGAATTTGAATTCAAATTTGAGGCGGCAAGTGCGATAAGG
66 TAAATCACTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGC-GCAAGTGCGATAAGG
* * * * * * * *
33263409 GTAGCCTTTATATGAATAGAATGTGCGAGAGTTGATTGGGTGCGATCATACC-AGTACTAATGTA
130 GGAGCCTTAATAT-AATAGATTGCGCAAGAGTTGA-CGGGTGCGATCATACCTAGCACTAATGCA
* * * * * *
33263473 CCGAAT-CCACCAGAACTCCA-A-AT-AGCGTGCTTTGGGCTAGAGTTGTACTCGGATGGGTGAC
193 CCGGATCCCATCAGAACTCCACAGTTAAGCGTGC--TGGGCGAGAGTAGTACTAGGATGGGTGAC
*
33263534 CTCCT-GGAAGTCCTCGTG-TGCACCACTCCCA---TA-ATTTCA-GTAA----TTTAAACATCG
256 CTCCTGGGAAGTCCTCGTGTTGCACC-CCCCCATTTTATATTTCATGTAATTTTTTTAAACATCG
*
33263588 -TT-ACGTAATTA-TTATTT-TCATTTTAC-AAATAAATCACTTG-AACTGTTATTTTGGTCAAA
320 TTTAAC-TAATTAGTTATTTGT-GTTTTACGAAATAAATCACTTGAAAC-GTTA-TTTGGTCAAA
** * *
33263647 TTTGAATTTCCTATTCGAGGGCGCAAATGCGATAAGGGGTAGCCTTT-TAATAAATAGAGTGC-A
381 TTTGAA-TTCAAATTCGA-GGCGCAAGTGCGATAAGGGGTAGCCTTTAT-ATAAATA-ATTGCGA
**
33263710 CGAGAGTTGACGGGTTAGATTATACCAGCACTAATGCACC-GAATCCCATCA-AATCTCTACAGT
442 --AGAGTTGACGGGTTAGATTATACCAGCACTAATGCACCAG-ATCCCATCAGAA-CTCCGCAGT
* * *
33263773 TAAGCGTGCTCTGTTGGCTATAGAGTTAGTACTAGGATGGATGA-CTCAC-GGGAAGTCTTCGTG
503 TAAGCGTGCT-TG--GGC--GAGAG-TAGTACTAGGATGGGTGACCTC-CTGGGAAGTCCTCGTG
33263836 TTGCACCCC-CTCCA-T
561 TTGCACCCCTC-CCATT
* * *
33263851 TAATATTTCATGTAATTTGTGTGTGTTTAAAC--AGTTGAA--AATTAGTTATTTGCG-TTTACG
1 TTATATTTCATGTAATTT-T-T-TTTTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACG
* * *
33263911 AAATAAATCGCTTGAACA--TTATTTGG-CGAATTTTTTAATTCAAATTTGAGGCGCAAGTGTGA
63 AAATAAATCACTTGAA-ATGTTATTTGGTCGAA--TTTGAATTCAAATTTGAGGCGCAAGTGCGA
* * *
33263973 TAAGGGGTAGCTTTTACAT-TAAATAGATTGCGCAAGAGTTGATGGGAGCGATGC--ACC-AGCA
125 TAAGGGG-AGC-CTTA-ATAT-AATAGATTGCGCAAGAGTTGACGGGTGCGAT-CATACCTAGCA
* * *
33264034 CTAATG-ACCGGATCCCATCA-AACTCCGA-AGGTAAGCGTGCTTGGCTGAGAGTAGTATTAGGA
185 CTAATGCACCGGATCCCATCAGAACTCC-ACAGTTAAGCGTGCTGGGC-GAGAGTAGTACTAGGA
* **
33264096 TGGGTGACCTCCTGGGAATTCCTCGTGTTGCACCCCTCTTATTTTATATTTCATGTAATTTTTTT
248 TGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCC-CCCATTTTATATTTCATGTAATTTTTTT
* * * *
33264161 AAACATTG-TTAACTAATTAGTTATTTGCGTTTTTCGAAATAAATCACTTG-AACGTT-TATTGA
312 AAACATCGTTTAACTAATTAGTTATTTGTGTTTTACGAAATAAATCACTTGAAACGTTAT-TTGG
* * *
33264223 TCAAATTTGAATTCAAATTCGAGGCACAAGTG-TATAAGGGGTAGCCTTTATATAAATAGA-CGC
376 TCAAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATA-ATTGC
* * * * *
33264286 -AAGAG-T-ACGGGTTAGATTATACTAACCCTAATGCACCAGATCCCATCAAAAC-CC-C-GGTA
440 GAAGAGTTGACGGGTTAGATTATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTA
* * * * *
33264345 AGTTCGTGCTTGGGTGAGAGCAGTACTACGATGGGT-ATCTCCTGGGAAGCCCTCGTGTTGCACC
505 AG--CGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACC
*
33264409 GCTCCCCA-T
568 CCT-CCCATT
* ** * * *
33264418 TTATATTTCATGTAAGTTTACTTTTAAACATTGTTTAACTAATTAG-T-TTTGTGTTTTATGAAA
1 TTATATTTCATGTAATTTTTTTTTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGAAA
** * * *
33264481 TAAATCGTTTGAAACGTTACTTGGTC-AA-TTGAATTC-AATTTGAGGCGCAAGCGCGATAAGGG
66 TAAATCACTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGGG
* *
33264543 GTAGCCTTACATA-AATAGATTGCGCAAGAGTTGACGGGTGCGATGATA-CTAGCACTAATGCAT
131 G-AGCCTTA-ATATAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCTAGCACTAATGCAC
* ** * *
33264606 CGGATCCCATTAGAACTCTGCA-AGTTAAATGTGCT-TGCTGA-A-TAAT-C-AGGTAT-GGTGA
194 CGGATCCCATCAGAACTC--CACAGTTAAGCGTGCTGGGC-GAGAGTAGTACTAGG-ATGGGTGA
* * * *
33264664 CCTCCT-GGAATTTTTCCTCCCGGGCCGGGTTCCAAAACCCGCCCCCTTTT-T-TTTCCTATCTC
255 CCTCCTGGGAA---GTCCT-------CGTGTTGC---ACCC-CCCCATTTTATATTT-C-A--T-
* * * *
33264726 TTTATTTTTCGTTAAACATCGCTTAACTAATTAGTTATTTGTGTTTTACGAAATATATCACTTGA
301 GTAATTTTT--TTAAACATCGTTTAACTAATTAGTTATTTGTGTTTTACGAAATAAATCACTTGA
* * * * * * *
33264791 AACATTGTTTTGTCAAATTTGTATTCAAATTCGTA-GCGCAAGTGCAATAA--GGAAGCCTTCA-
364 AACGTTATTTGGTCAAATTTGAATTCAAATTCG-AGGCGCAAGTGCGATAAGGGGTAGCCTTTAT
* ** * ** *
33264852 ATATAATAGATGTGC-ACGAGTTGACGGGTGCGATTATACTAGTGCT-ATGCTCCAGATCCC-TC
428 ATA-AATA-AT-TGCGAAGAGTTGACGGGTTAGATTATACCAGCACTAATGCACCAGATCCCAT-
* * * * * *
33264914 CAGAACTACGCAGTTAAGCATGCTTGGGTGAGACTGGTACTAGGATGGGTGACCTCCTAGGAAGT
489 CAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGT
* * *
33264979 CCTGGTGTTGCGCCCCTCCTATT
554 CCTCGTGTTGCACCCCTCCCATT
* * *
33265002 TTATATTTCATGTAA--TTTTTTTCAAACATCGTTTAAGTAATTAGTTA-------TTTACGAAA
1 TTATATTTCATGTAATTTTTTTTTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGAAA
* * *
33265058 TAAATCACTTG-AATCGTTATTTGGTCGAATTTCAATTCAAATTCGAGGCGCAAGTGCGTTAAGA
66 TAAATCACTTGAAAT-GTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAG-
* * * * ** *
33265122 GGGAGCCCTAATATAAGTAGATTGCGTAAAAATTGACGGGTATGATCATACCTA-CAGTAATGCA
129 GGGAGCCTTAATATAA-TAGATTGCGCAAGAGTTGACGGGTGCGATCATACCTAGCACTAATGCA
* *
33265186 CCGGATCCCATCAGAACTCCACAGTTAAGCGTGCTCGGGCGAGAGTAGTACAAGGATGGGTAACC
193 CCGGATCCCATCAGAACTCCACAGTTAAGCGTGCT-GGGCGAGAGTAGTACTAGGATGGGTGACC
* * * *
33265251 TCTTGGGAAGTCATCGTGTTGCACCCCCCCATTTTATATTTCGTGTAAATTTTTTTAAACATAGT
257 TCCTGGGAAGTCCTCGTGTTGCACCCCCCCATTTTATATTTCATGT-AATTTTTTTAAACATCGT
* * * * * * * *
33265316 TTAAGTAATTAGTTATTTGTGTTTTACAAAAGAAATCCCTCGAAATGTTATTTCGTCGAATTTGA
321 TTAACTAATTAGTTATTTGTGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCAAATTTGA
* * * * * * **
33265381 ATTCAAATACGATGCGCAAGTGTGATGAGGGGTAGCCTTTATAAAAATATTCTGCGATCAGTTGA
386 ATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAAT-TGCGAAGAGTTGA
* *** * * * *
33265446 CGGGTGT-GATCATACCCTTACTAATGCACCGGATCCCATCAGTACTCCGCAATTAAGCATGCTT
450 CGGGT-TAGATTATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAGCGTGCTT
* *
33265510 GGGCGAG-GATAGTACTGGGATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCCCTCCCATT
514 GGGCGAGAG-TAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33265573 TTATGTTTCATGTAATTTTTTTCTTTAAACATTGTTTAACTAATTAGTTATTTTCGTTTTACGAA
1 TTATATTTCATGTAATTTTTTT-TTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGAA
* ** *
33265638 ATAAATCACTTGAAATGTTATTTAGTCGAATTTGAATTCAAATTCAAGGTGCAAGTGCGATAAAG
65 ATAAATCACTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGAT-AAG
*** * * * ** * *
33265703 TCTAGCCTTTATATAAACAGAATGCGCAAGAACTGATGTGTGCGATCATA-CTAGCACTAATGCA
129 GGGAGCCTTAATAT-AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCTAGCACTAATGCA
* * *** * * * * * *
33265767 TCGGATCCCATCAGAAGTTTGCAATTAAGAGTGCTTGGGCGAGAGTTGT-CTTTGGTTGGTTGAC
193 CCGGATCCCATCAGAACTCCACAGTTAAGCGTGC-TGGGCGAGAGTAGTAC-TAGGATGGGTGAC
* *
33265831 CT-CTGGGAAGTCCTCGTGTTGAACCCCTCCA----AT-TTT-A--T-A----TTT---CAT-G-
256 CTCCTGGGAAGTCCTCGTGTTGCACCCCCCCATTTTATATTTCATGTAATTTTTTTAAACATCGT
* * *
33265877 -TAACTAATTAGTTATTTGTGTTTTACGAAACAAATCATTTGAAATGTTATTTGGTCAAATTTGA
321 TTAACTAATTAGTTATTTGTGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCAAATTTGA
* ** * *
33265941 ATTCAAATTCTAGTTGCAAGTGCGATAAGGGGTAGCCTTTACAGAAATAGATTGCGTAAGAGTTG
386 ATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATA-ATTGCG-AAGAGTTG
* * * * * * * *
33266006 ACGGGTGCA-ATCATACCAGCACAAATGCACCTGATCCCATTAGAACTTCGTAGTTAAGCATGCT
449 ACGGGT-TAGATTATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAGCGTGCT
* * * * *
33266070 TGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTAGGAAGTGCTCGTGTTGCACCCTTCCCATA
513 TGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * *
33266134 ATATATTTCATGTAATTTTTTTCTTTAAACATCGTTTAACTAATTAGTTATTTACATTTTACGAA
1 TTATATTTCATGTAATTTTTTT-TTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGAA
* * * ** **
33266199 ATAAAT-ATCTTGAAATTTTATTTGGTCAAATTTAAATTCAAATTCAAGGCGCAAGACCGATAAG
65 ATAAATCA-CTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAG
* ** ** * * * *
33266263 GGGTAGCC-TATATATACATAGAATGCATAAGAACTGATGGGTCCGATTATACC-AGCACTATTG
129 GGG-AGCCTTA-ATATA-ATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCTAGCACTAATG
* * * * * *
33266326 TACCGAATCCCATCTGAACTGCC-CAGTTAAGAGTGCTTGGGCAAGTGCGATAAGGGGTAGCCTT
191 CACCGGATCCCATCAGAACT-CCACAGTTAAGCGTGC-TGGGC--GAGAG-T-A---GTA--C--
* ** ** ** * ** **
33266390 TA-TATAAACAGAATGCACAAGAACTGATGTGTTAGATCATACCAAAGCTAATGCACCAGATCCC
243 TAGGAT-----GGGTG-AC-----CTCCTG-GGAAG-TCCT--C---G-TGTTGCACC--CCCCC
*** * * * ** ** *** ** ** ** **
33266454 ATCAGA-ACTCCACAGTTAAGAGTGCTTGGGCGAGAGTTGTACT-A-T-G--ATGGGTGACCTCC
287 ATTTTATATTTCA-TG-TAA-TTTTTTTAAAC-ATCGTTTAACTAATTAGTTATTTGTG---TTT
** ** ** ** * * * * ** * **
33266513 TGGGAAAT-CCTCGTGTTGCACCCCTCCCATTT--T-ATATTT-CATGT-AAATTTTTTATAGTT
345 TACGAAATAAATC-ACTTG-AAACGT--TATTTGGTCAAATTTGAAT-TCAAA--TTCGA-GGCG
* * * ***** * * * ** ** *
33266572 TAACT--AATTATCTATTTGCGTTT-TACAAAATAAATCACTTGAA-ACGTT-ATTTGG-TCGAA
402 CAAGTGCGA-TAAGGGGTAGCCTTTATA-TAAAT-AATTGC--GAAGA-GTTGA-CGGGTTAG-A
* * * * * * * * *** * ** *** * *
33266631 TT-TGA--ATTCAACTTCGAGGCGCAAG-TTCAATAAGGGGT-AGCCTTTATATAAATAGATTGT
459 TTAT-ACCA-GC-AC-T-AATGCACCAGATCCCATCAGAACTCCGCAGTTA-A-GCGT-GCTTGG
* * * * * * *
33266691 GCAAGAGTTG-AC-AGG-CGTGATCATACTAGCACTAATGGAATGGAGCCCATCAAAACTCCGTA
516 GCGAGAGTAGTACTAGGATG-GGTGA-CCT--C-C---TGG---GAAG----TC----CT-CGT-
*** * **
33266753 GTTAAGC-TTGCTCGGGCGAGAG
560 GTT--GCACCCCTC---CCA-TT
* *** * ** * *** ** * * * *** **** **
33266775 TAATACTAGGATGGGTGA-CCTCTTAGGAGGTCCTCGTGTTGCACCCCTCCCAT-TTTATG-TTT
1 TTATA-TTTCAT--GTAATTTTTTTTTTA-AACATAGT-TT-AACTAATTAGTTATTTGCGTTTT
* * *** ** * ** ** * * * *
33266837 CCTATAATTTTTTTCTTTAAACATCGATTAACTAAT-TAATTT--TTTGC--GTTTTA--CG-AA
60 ACGA-AATAAATCAC-TTGAA-AT-G-TTATTTGGTCGAATTTGAATT-CAAATTTGAGGCGCAA
* *** * *** * * * * ** * ** * * * *
33266894 ATAAAACACTTGAAACGTT-ATTTGGTCGAATTTGAATTCAA-A-TTCA-AGGCGCAAGTACGAT
119 GTGCGATAAGGGGAGCCTTAATATAATAG-A-TTG--CGCAAGAGTTGACGGGTGCGA-T-C-AT
** * * * * * * *
33266955 AAGGGATATC-CTTTATAT-AAACGGAAT-GCA-CAAGAACT-AATGGGTGAGATCATACGAACA
177 -A--CCTAGCAC--TA-ATGCACCGG-ATCCCATC-AGAACTCCA-----CAG-T--T---AA-G
* * * * * * *
33267015 CTAATGCACCGGATCCCAGAGTTGTACTAGGATGGGTAACCTCCTAGGAAGTCCTCGTGTTGCAC
222 C--GTG--CTGG--GCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCAC
* * *
33267080 CCCTCCCATTTTATATTTCGTGTAATTTTTTTAAAACATAGTTTAACTAATTAGTTATTTGCGTT
281 CCC-CCCATTTTATATTTCATGTAATTTTTTT-AAACATCGTTTAACTAATTAGTTATTTGTGTT
* * * *
33267145 TTACGAAATAAATCACTAGAAACGTTATTTGGTCGAATTTGAATT-AAATTCAAAGCGCAAGTGC
344 TTACGAAATAAATCACTTGAAACGTTATTTGGTCAAATTTGAATTCAAATTCGAGGCGCAAGTGC
* * * * * * ** * *
33267209 GATAACGGGTAGCCTTCATATAAATAAAATGCACAAGAGCTGACTGGTGCGATCATACTAGCACT
409 GATAAGGGGTAGCCTTTATATAAAT-AATTGC-GAAGAGTTGACGGGTTAGATTATACCAGCACT
* * * *
33267274 AATGCACCGGATCCCATCAGAACTCCGTAGTTAAGTGTGCTCGGGCGAGAGTAGTACTAGGATGG
472 AATGCACCAGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGG
* * * *
33267339 TTGACCTCTTGGGATGTCCTCGTGTTGCACACCTCCCATT
537 GTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33267379 TTATGTTTCATGTAATTTTTTTCTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTCTACGAA
1 TTATATTTCATGTAATTTTTTT-TTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGAA
** * ** *
33267444 ATAAATCACTTGAACGGTTATTTGGTCAAATTTGAATTCAAATTCAAAGCGCAAGTGCGATAAGG
65 ATAAATCACTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGG
* * * * * * * * *
33267509 GTAGCCTTTATACGAA-AGAATGCCCAAGAACTT-ATGGGTGCCATCATACC-GGCACTAATGCA
130 GGAGCCTTAATA-TAATAGATTGCGCAAG-AGTTGACGGGTGCGATCATACCTAGCACTAATGCA
* * **** * * *
33267571 TCGGATCCTATCAGAACAATGCAGTTAAGAGTGCTTGGGCGAGAGTTGTATTAGGATGGGTGACC
193 CCGGATCCCATCAGAACTCCACAGTTAAGCGTGC-TGGGCGAGAGTAGTACTAGGATGGGTGACC
* * * * * **
33267636 -CCTAGGAAGTCCTCGTGTTGCA-CCCCCTAATTTATATTTCAAGTAAAATTTTTTTAAATATAT
257 TCCTGGGAAGTCCTCGTGTTGCACCCCCCCATTTTATATTTCATGT--AATTTTTTTAAACATCG
* * *
33267699 TTTAACAAATTAGTTATTTGCGTTTTACGAAA-ACAATCACTTGAAACGGTATTTGGT-AGAATT
320 TTTAACTAATTAGTTATTTGTGTTTTACGAAATA-AATCACTTGAAACGTTATTTGGTCA-AATT
* * * * *
33267762 TGAATTCAAATTCGAGACACATGTGCGATAA-GGGTAGCCTTTATATAAATAGAATGCGCAAGAC
383 TGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATA-ATTGCG-AAGAG
** * ** * * *
33267826 TTGATAGGTGT-GATCATACCCTCAATAATGCGCC-GAATCCCATCAGAACTCCGCATTTAAGCG
446 TTGACGGGT-TAGATTATACCAGCACTAATGCACCAG-ATCCCATCAGAACTCCGCAGTTAAGCG
* * * *
33267889 TGCTTGGGCGAGAGTAGTACTAGAAT-GGTGACAT-CTTGGAATGTCCTCGTGTTGCACCACTCC
509 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAA-GTCCTCGTGTTGCACCCCTCC
*
33267952 TATT
573 CATT
* * * * *
33267956 TGATATTTGATGTAA--GTTTTTTTAAACATCGTTTAACTAATTAGTTATTTGCATTTTACGAAA
1 TTATATTTCATGTAATTTTTTTTTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGAAA
** * ** * *
33268019 TAAATCACTTGAAACATTATTCGGTTTAATTTGAATTCAAATTCGAGGCGCAAGTGCAATAAGGT
66 TAAATCACTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGG-
** * * * * * **
33268084 ATAGCCTTTATATAAATAGAATT-TGTAAAAGTTGACGGGTGCGACCATACC-AGCTTTAATGCA
130 GGAGCCTTAATAT-AATAG-ATTGCGCAAGAGTTGACGGGTGCGATCATACCTAGCACTAATGCA
** ** * * * *
33268147 GAGGATCCCATCAGAACTCTGCAGTTAATCGTGCTTGGGTGAGAGTCGTACTAGGATGGGTGACA
193 CCGGATCCCATCAGAACTCCACAGTTAAGCGTGC-TGGGCGAGAGTAGTACTAGGATGGGTGACC
* * *
33268212 TCCTGGGAAGTCCTCGTGTTGCATCCCTCCATTTTATTTTTCATGTAATTTTTTTCTTTAAACAT
257 TCCTGGGAAGTCCTCGTGTTGCACCCCCCCATTTTATATTTCATGTAA---TTTT-TTTAAACAT
* * *
33268277 CATTTAACTAATTAGTTATTTGTGTTTTATGAAATAAATCACTTGAAACGTTATTTGGTCGAATT
318 CGTTTAACTAATTAGTTATTTGTGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCAAATT
* * * * * *
33268342 TG-ATATAAAATTCGTGGTGCAGGTGCGATAAGGGGTAGCCTTCATATAAATAGAATGCGCAAGA
383 TGAAT-TCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATA-ATTGCG-AAGA
*** * * *
33268406 GTTGACGGGCGCGATCATACCATCACTAATGCACCAGATCCCATCAGAACTCTGCAGTTAAGCGT
445 GTTGACGGGTTAGATTATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAGCG-
* * * * ** *
33268471 ATGC--AGGCAAAAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTTTTTGTGTTGCACCCCTCC
509 -TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCC
*
33268534 CGTT
573 CATT
* * * *
33268538 TTATATTTCAT-TGATTTTTTTTCTTTAAACATCA-CTTAACTAATTAGTT-TCTTGTGTTTTAT
1 TTATATTTCATGT-AATTTTTTT-TTTAAACAT-AGTTTAACTAATTAGTTAT-TTGCGTTTTAC
* * ** * * ** * ** * *
33268600 GAAATATATCTCTCAAAACGTTGTTTTCTTGAATTCAAATTCAAATTCGAGGGGCAAGTGCGATA
62 GAAATAAATCACTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATA
*** * * * * * * **
33268665 AATAGAGGCCTTTATATAAATAGAATGCGCATGAGTTGCCGGGTGCGATTATATC-AGTGCTAAT
127 AGGGGA-GCCTTAATAT-AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCTAGCACTAAT
* * * * *** * * *
33268729 GCTCTGGATCTCATTAGAACTCTGTAGTTAAGCGTGCCTTGGCGAGAGTAATGCTAGGATGGGTG
190 GCACCGGATCCCATCAGAACTCCACAGTTAAGCGTG-CTGGGCGAGAGTAGTACTAGGATGGGTG
* * *
33268794 ACCTCCTGGAAAGTCCTCGTGTTGCACCCCTCCCTTTTTATATTTCATGTAATTTTTTTAAATAT
254 ACCTCCTGGGAAGTCCTCGTGTTGCACCCC-CCCATTTTATATTTCATGTAATTTTTTTAAACAT
** * * ** * *
33268859 AATTTAACTAATTACTTATTAGCATTTTACGAAATAAATTACTTGAAACGTTATTTGGTCGAATT
318 CGTTTAACTAATTAGTTATTTGTGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCAAATT
** * * * * *
33268924 TGAATTCAAATTTTAAGAGGAAGTGCGATAAGGGGTAGCCTTCATATAAATAGGTTGCGCAAGAG
383 TGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATA-ATTGCG-AAGAG
** * ** * *
33268989 TTGACGGGTGCGATCATACCAGCACTAATGCATCGGGA-CCAATC-GAAGCTCC-CAAGATAAGC
446 TTGACGGGTTAGATTATACCAGCACTAATGCA-CCAGATCCCATCAGAA-CTCCGC-AGTTAAGC
* * * * * *
33269051 GAGCCTAGGCGAGAGAAGTACTAGGATGGGTGACCTCCTAGGAAATCCTCGTGTTGCACCCCTCC
508 GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCC
33269116 CATT
573 CATT
** ** * * * ** *
33269120 TT-TATTTTGTGTAA-GGTTTTTTAAAAAAT-GTTTACCTAATTAGTTATTTGTATTTTACTAAA
1 TTATATTTCATGTAATTTTTTTTTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGAAA
** * * * * *
33269182 TAAATCACTTGAAACATTATTTGGTCGAATTTGAATTCAAA-GTCATGGCGTAAGGGCAATAAGG
66 TAAATCACTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGA-GGCGCAAGTGCGATAAGG
* * ** *
33269246 GGTAGCCTTTATATAAGTAGATTGCGTAAGAGTTGATAGGTGTGATCATACC-AGCACTAATAG-
130 GG-AGCCTTAATATAA-TAGATTGCGCAAGAGTTGACGGGTGCGATCATACCTAGCACTAAT-GC
* * * * * * ** *
33269309 ACCGAATCCCATCAGAAC-CCTGCAATCAATCATGCTTGGGATAGAGTAGTACAAGGATGGGTGA
192 ACCGGATCCCATCAGAACTCC-ACAGTTAAGCGTGC-TGGGCGAGAGTAGTACTAGGATGGGTGA
* *
33269373 CCTCCTGGGATGTACTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAACTTTTTTTTAAACA
255 CCTCCTGGGAAGTCCTCGTGTTGCACCCC-CCCATTTTATATTTCATGTAA--TTTTTTTAAACA
* * * * * **
33269438 TTGTTTAACTAATTACTTATTTGCGTTTAACGAAATAAATCACTTGAAATGTTATTTGGTTTAAT
317 TCGTTTAACTAATTAGTTATTTGTGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCAAAT
* * * * * **
33269503 TTGAATTAAAATTCGAGGTGCAAGTGTGATATGGGGTAGCTTTTATATAAATAGAAGGCGCAAGA
382 TTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATA-ATTGCG-AAGA
* ** * * * *
33269568 GTTGACGGG-TATGATCATACCCTCACTAATACA-CTGATCCCATCAGAACTCCGTAGTTAAACG
445 GTTGACGGGTTA-GATTATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAGCG
* * * * * * * * *
33269631 TGCCTGGGTGATAGTAGTACTAGGATGGGTGACTTCTTGGAAATTCCTCATGTTGCACCCCTCTA
509 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC-C
*
33269696 AATT
573 CATT
* * * * * *
33269700 TTATATTTCATGTAA----TTTTTTAAACATAATTGAGCTAATTACTTATTAGCATTTTACGAAA
1 TTATATTTCATGTAATTTTTTTTTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGAAA
* * * * * * *
33269761 TAAATCACTGGAAATGTTATTTGGTCGAATTTGAATTCAAATTCGAAGCGGAAATGTGATATGGG
66 TAAATCACTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGGG
** * * **
33269826 GTAGCCTTTGTATAAATAGATTGCACAAGAGTTGACGAGTGAAAAT-ATACC-AGCACTAATGCA
131 G-AGCCTTAATAT-AATAGATTGCGCAAGAGTTGACGGGTG-CGATCATACCTAGCACTAATGCA
* * * * *
33269889 CCAGG-TCCAAACAGAACTCTC-CAGATAAACGTGCCTAGGCGAGAGTAGTACTAGGATGGGTGA
193 CC-GGATCCCATCAGAACTC-CACAGTTAAGCGTG-CTGGGCGAGAGTAGTACTAGGATGGGTGA
* * * *
33269952 CCTCCTGGGAAGTCCTCGTGTTGCACCCCTTCCA-TTTATATTTTATGTAATTTTTTTTAAAAAA
255 CCTCCTGGGAAGTCCTCGTGTTGCACCCC-CCCATTTTATATTTCATGTAA-TTTTTTTAAACAT
* * * ** * *
33270016 CATTTACCTAATTAGTTATTTGCGTTTTATTAAATAAATCAGTTGAAACAG-TATTTGGTCGAAT
318 CGTTTAACTAATTAGTTATTTGTGTTTTACGAAATAAATCACTTGAAAC-GTTATTTGGTCAAAT
* * * * * *
33270080 TTGACTTCAAATTCGATGCACAAGGGCGATAAGGGGTAGCCCTTATATAAGTAGATTGCGTAAGA
382 TTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATA-ATTGCG-AAGA
* * * * * * * *
33270145 GTTGATGGGTGT-GATCATACCAGCACCAATGGACCGGATCCCATCAAAACTCCACAGTTAAGCA
445 GTTGACGGGT-TAGATTATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAGCG
* * * *
33270209 TGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCGCCTGGGAAGTACTCGTGGTGCACCCCTCCC
509 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
33270274 ATT
574 ATT
* * *
33270277 TTATATTTCATGTAA--------TT-----T--TTTAACTAATTAGTTATTTACATTTAACGAAA
1 TTATATTTCATGTAATTTTTTTTTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGAAA
* * * * * * *
33270327 TAAATCACTTGCAACGTGATTTGGTCGAATTTGAATTCAAATTTGATGCGTAAGTGTGATATGGG
66 TAAATCACTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGGG
* * * * * *
33270392 GTAGCCTTTATATAAATTGAATGCGCAAGAGTTGACGGGTCCGATCATGCCCT--TACTAATGCA
131 G-AGCCTTAATAT-AATAGATTGCGCAAGAGTTGACGGGTGCGATCAT-ACCTAGCACTAATGCA
* ** * * * *
33270455 CCAGATCCCATCAGATTTCCGCAGTCAAGCATGGTTGGGCGAGAGTAGTACTAGGATGGGTGACC
193 CCGGATCCCATCAGAACTCCACAGTTAAGCGT-GCTGGGCGAGAGTAGTACTAGGATGGGTGACC
*
33270520 TCCTGGGAAGTCCACGTGTTGC-CCCCTTCCCATTTTATATTTCATGTAATTTTTTTCTTTAAAC
257 TCCTGGGAAGTCCTCGTGTTGCACCCC--CCCATTTTATATTTCATGTAA---TTTT-TTTAAAC
* * * * **
33270584 ATCGTTTAACTAATTAGTTATATGCGTTTTACGAAATAAATCACTTGAAGCATTATTTGGTTGAA
316 ATCGTTTAACTAATTAGTTATTTGTGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCAAA
* * *
33270649 TTTGAATTCAAATTCGAGGTGCAAGTGCGATAAGGGGTAGCCTTTATATAAAAAGAATGCGCAAG
381 TTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATA-ATTGCG-AAG
*** ** * ** * * * *
33270714 AGTTGACGGGGGCGACCATACCATCACTAATGCACTGGATCCCATCAAAACTCTGCGGTTAACCG
444 AGTTGACGGGTTAGATTATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAGCG
** * * * * * * * *
33270779 TGCACGGGCAAAAGTGGTACTAGCAT-GGTGACATCCAGGGAAGTCCTCGTGTTGCATCCCTTCC
509 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
33270843 ATT
574 ATT
* ** * * *
33270846 TTATATTTCATTGAAATTTTTTTTGTTTAAACA-ACACTTAACAAATTAGTTATTTGCGTTTCAT
1 TTATATTTCA-TGTAA-TTTTTTT-TTTAAACATA-GTTTAACTAATTAGTTATTTGCGTTTTAC
* * * * * *
33270910 GAAATATATCACTTGAAACGTTGCTTT-TTCAAATTTGAATTCAAATTTGAGGTGCAAGTGCGAT
62 GAAATAAATCACTTGAAATGTT-ATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGAT
* * * * * *
33270974 AAGGGGTAG-CTTTATATAAATGGAATACGCAAGAGTTGATGGGTGCGATCATACC-AGTACTAA
126 AAGGGG-AGCCTTAATAT-AATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCTAGCACTAA
33271037 TGC
189 TGC
33271040 TCAAAATCCC
Statistics
Matches: 7316, Mismatches: 1509, Indels: 1249
0.73 0.15 0.12
Matches are distributed among these distances:
544 5 0.00
546 7 0.00
547 7 0.00
548 1 0.00
550 15 0.00
551 2 0.00
552 5 0.00
553 36 0.00
554 59 0.01
555 146 0.02
556 156 0.02
557 109 0.01
558 73 0.01
559 89 0.01
560 187 0.03
561 329 0.04
562 42 0.01
563 37 0.01
564 81 0.01
565 92 0.01
566 324 0.04
567 120 0.02
568 196 0.03
569 156 0.02
570 359 0.05
571 167 0.02
572 43 0.01
573 93 0.01
574 185 0.03
575 78 0.01
576 142 0.02
577 328 0.04
578 597 0.08
579 525 0.07
580 534 0.07
581 433 0.06
582 366 0.05
583 144 0.02
584 57 0.01
585 225 0.03
586 73 0.01
587 81 0.01
588 3 0.00
589 1 0.00
590 1 0.00
591 7 0.00
592 2 0.00
593 3 0.00
595 4 0.00
596 12 0.00
597 9 0.00
598 8 0.00
599 1 0.00
600 11 0.00
601 22 0.00
602 14 0.00
603 12 0.00
604 21 0.00
605 5 0.00
607 2 0.00
608 5 0.00
609 3 0.00
610 8 0.00
611 3 0.00
612 9 0.00
613 20 0.00
614 27 0.00
615 27 0.00
616 19 0.00
617 11 0.00
618 12 0.00
619 3 0.00
622 3 0.00
623 2 0.00
626 4 0.00
627 11 0.00
628 10 0.00
629 15 0.00
630 27 0.00
631 36 0.00
632 13 0.00
633 25 0.00
634 17 0.00
635 4 0.00
636 7 0.00
637 2 0.00
638 5 0.00
639 8 0.00
640 12 0.00
641 13 0.00
642 13 0.00
643 14 0.00
644 17 0.00
645 11 0.00
646 6 0.00
647 19 0.00
648 10 0.00
651 2 0.00
652 3 0.00
653 2 0.00
654 2 0.00
656 3 0.00
657 2 0.00
660 3 0.00
661 4 0.00
662 1 0.00
663 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (576 bp):
TTATATTTCATGTAATTTTTTTTTTAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGAAA
TAAATCACTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGGG
GAGCCTTAATATAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCTAGCACTAATGCACCG
GATCCCATCAGAACTCCACAGTTAAGCGTGCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCT
GGGAAGTCCTCGTGTTGCACCCCCCCATTTTATATTTCATGTAATTTTTTTAAACATCGTTTAAC
TAATTAGTTATTTGTGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCAAATTTGAATTCA
AATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAATTGCGAAGAGTTGACGGGTT
AGATTATACCAGCACTAATGCACCAGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAG
AGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
Found at i:33266455 original size:117 final size:117
Alignment explanation
Indices: 33266256--33266484 Score: 302
Period size: 117 Copynumber: 2.0 Consensus size: 117
33266246 GGCGCAAGAC
* * * * * *
33266256 CGATAAGGGGTAGCCTATATATACATAGAATGCATAAGAACTGATGGGTCCGATTATACCAGCAC
1 CGATAAGGGGTAGCCTATATATAAACAGAATGCACAAGAACTGATGGGTCAGATCATACCAGAAC
* * *
33266321 TATTGTACCGAATCCCATCTGAACTGCC-CAGTTAAGAGTGCTTGGGCAAGTG
66 TAATGCACCGAATCCCATCAGAACT-CCACAGTTAAGAGTGCTTGGGCAAGTG
* * *
33266373 CGATAAGGGGTAGCCTTTATATAAACAGAATGCACAAGAACTGATGTGTTAGATCATACCA-AAG
1 CGATAAGGGGTAGCCTATATATAAACAGAATGCACAAGAACTGATGGGTCAGATCATACCAGAA-
33266437 CTAATGCACC-AGATCCCATCAGAACTCCACAGTTAAGAGTGCTTGGGC
65 CTAATGCACCGA-ATCCCATCAGAACTCCACAGTTAAGAGTGCTTGGGC
33266485 GAGAGTTGTA
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
116 4 0.04
117 93 0.96
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.24
Consensus pattern (117 bp):
CGATAAGGGGTAGCCTATATATAAACAGAATGCACAAGAACTGATGGGTCAGATCATACCAGAAC
TAATGCACCGAATCCCATCAGAACTCCACAGTTAAGAGTGCTTGGGCAAGTG
Found at i:33267285 original size:257 final size:260
Alignment explanation
Indices: 33266778--33267289 Score: 737
Period size: 257 Copynumber: 2.0 Consensus size: 260
33266768 GCGAGAGTAA
* * * *
33266778 TACTAGGATGGGTGACCTCTTAGGAGGTCCTCGTGTTGCACCCCTCCCATTTTATGTTTCCTATA
1 TACTAGGATGGGTAACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCCTATA
* * * *
33266843 ATTTTTTTCTTTAAACATCGATTAACTAATTAATTTTTTGCGTTTTACGAAATAAAACACTTGAA
66 A-TTTTTTCTTAAAACATAGATTAACTAATTAATTATTTGCGTTTTACGAAATAAAACACTAGAA
* * *
33266908 ACGTTATTTGGTCGAATTTGAATTCAAATTCAAGGCGCAAGTACGATAAGGGATATCCTTTATAT
130 ACGTTATTTGGTCGAATTTGAATTCAAATTCAAAGCGCAAGTACGATAAGGGATAGCCTTCATAT
**
33266973 AAACGGAATGCACAAGAACTAATGGGTGAGATCATACGAACACTAATGCACCGGATCCCAGAGTT
195 AAACAAAATGCACAAGAACTAATGGGTGAGATCATACGAACACTAATGCACCGGATCCCAGAGTT
33267038 G
260 G
* *
33267039 TACTAGGATGGGTAACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCGTGTA
1 TACTAGGATGGGTAACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCCTATA
* * *
33267104 A-TTTTT-TTAAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTAGAAA
66 ATTTTTTCTTAAAACATAGATTAACTAATTAATTATTTGCGTTTTACGAAATAAAACACTAGAAA
*
33267167 CGTTATTTGGTCGAATTTGAATT-AAATTCAAAGCGCAAGTGCGATAACGGG-TAGCCTTCATAT
131 CGTTATTTGGTCGAATTTGAATTCAAATTCAAAGCGCAAGTACGATAA-GGGATAGCCTTCATAT
* * * * * *
33267230 AAATAAAATGCACAAGAGCTGACT-GGTGCGATCATACTAGCACTAATGCACCGGATCCCA
195 AAACAAAATGCACAAGAACT-AATGGGTGAGATCATACGAACACTAATGCACCGGATCCCA
33267290 TCAGAACTCC
Statistics
Matches: 224, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
257 81 0.36
258 78 0.35
259 5 0.02
261 60 0.27
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (260 bp):
TACTAGGATGGGTAACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCCTATA
ATTTTTTCTTAAAACATAGATTAACTAATTAATTATTTGCGTTTTACGAAATAAAACACTAGAAA
CGTTATTTGGTCGAATTTGAATTCAAATTCAAAGCGCAAGTACGATAAGGGATAGCCTTCATATA
AACAAAATGCACAAGAACTAATGGGTGAGATCATACGAACACTAATGCACCGGATCCCAGAGTTG
Found at i:33268689 original size:293 final size:289
Alignment explanation
Indices: 33267032--33271039 Score: 3933
Period size: 289 Copynumber: 13.9 Consensus size: 289
33267022 ACCGGATCCC
* * *
33267032 AGAGTTGTACTAGGATGGGTAACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* * *
33267097 TCGTGTAATTTTTTTAAAACAT-AGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCAC
66 TCATGTATTTTTTTTTAAACATCA-TTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCAC
* * * *
33267161 TAGAAACGTTATTTGGTCGAATTTGAATT-AAATTCAAAGCGCAAGTGCGATAACGGGTAGCCTT
130 TTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTT
* * * * * *
33267225 CATATAAATAAAATGCACAAGAGCTGACTGGTGCGATCATACTAGCACTAATGCACCGGATCCCA
195 TATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCA
* * *
33267290 TCAGAACTCCGTAGTTAAGTGTGCTCGGGCG
260 TCAGAACTCTGCAGTTAAGCGTGCT-GGGCG
* * * * *
33267321 AGAGTAGTACTAGGATGGTTGACCTCTTGGGATGTCCTCGTGTTGCACACCTCCCATTTTATGTT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* *
33267386 TCATGTAATTTTTTTCTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTCTACGAAATAAATC
66 TCATGT-A-TTTTTT-TTTAAACATCATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATC
* * *
33267451 ACTTG-AACGGTTATTTGGTCAAATTTGAATTCAAATTCAAAGCGCAAGTGCGATAA-GGGTAGC
128 ACTTGAAAC-GTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGC
** * * * * * *
33267514 CTTTATACGAA-AGAATGCCCAAGAACTT-ATGGGTGCCATCATACCGGCACTAATGCATCGGAT
192 CTTTATATAAATAGAATGCGCAAG-AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGAT
* ** *
33267577 CCTATCAGAACAATGCAGTTAAGAGTGCTTGGGCG
256 CCCATCAGAACTCTGCAGTTAAGCGTGC-TGGGCG
* * * * *
33267612 AGAGTTGTATTAGGATGGGTGACC-CCTAGGAAGTCCTCGTGTTGCA-CCC-CCTAATTTATATT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* ** * *
33267674 TCAAGTAAAATTTTTTTAAATAT-ATTTTAACAAATTAGTTATTTGCGTTTTACGAAA-ACAATC
66 TCATGT-ATTTTTTTTTAAACATCA-TTTAACTAATTAGTTATTTGCGTTTTACGAAATA-AATC
* * * * *
33267737 ACTTGAAACGGTATTTGGTAGAATTTGAATTCAAATTCGAGACACATGTGCGATAA-GGGTAGCC
128 ACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCC
* ** * ** * * *
33267801 TTTATATAAATAGAATGCGCAAGACTTGATAGGTGTGATCATACCCTCAATAATGCGCCGAATCC
193 TTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCC
* *
33267866 CATCAGAACTCCGCATTTAAGCGTGCTTGGGCG
258 CATCAGAACTCTGCAGTTAAGCGTGC-TGGGCG
* * * * * *
33267899 AGAGTAGTACTAGAAT-GGTGACAT-CTTGGAATGTCCTCGTGTTGCACCACTCCTATTTGATAT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAA-GTCCTCGTGTTGCACCCCTCCCATTTTATAT
* ** * *
33267962 TTGATGTAAGTTTTTTTAAACATCGTTTAACTAATTAGTTATTTGCATTTTACGAAATAAATCAC
65 TTCATGTATTTTTTTTTAAACATCATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCAC
* * ** * **
33268027 TTGAAACATTATTCGGTTTAATTTGAATTCAAATTCGAGGCGCAAGTGCAATAAGGTATAGCCTT
130 TTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTT
** * * * ** **
33268092 TATATAAATAGAATTTGTAAAAGTTGACGGGTGCGACCATACCAGCTTTAATGCAGAGGATCCCA
195 TATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCA
* *
33268157 TCAGAACTCTGCAGTTAATCGTGCTTGGGTG
260 TCAGAACTCTGCAGTTAAGCGTGC-TGGGCG
* * * *
33268188 AGAGTCGTACTAGGATGGGTGACATCCTGGGAAGTCCTCGTGTTGCATCCCT-CCATTTTATTTT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* *
33268252 TCATGTAATTTTTTTCTTTAAACATCATTTAACTAATTAGTTATTTGTGTTTTATGAAATAAATC
66 TCATGT-A-TTTTTT-TTTAAACATCATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATC
* * * *
33268317 ACTTGAAACGTTATTTGGTCGAATTTG-ATATAAAATTCGTGGTGCAGGTGCGATAAGGGGTAGC
128 ACTTGAAACGTTATTTGGTCGAATTTGAAT-TCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGC
* * * *
33268381 CTTCATATAAATAGAATGCGCAAGAGTTGACGGGCGCGATCATACCATCACTAATGCACCAGATC
192 CTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATC
* *
33268446 CCATCAGAACTCTGCAGTTAAGCGTATGC-AGGCA
257 CCATCAGAACTCTGCAGTTAAGCG--TGCTGGGCG
* * ** * *
33268480 AAAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTTTTTGTGTTGCACCCCTCCCGTTTTATATT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* * * * *
33268545 TCATTGATTTTTTTTCTTTAAACATCACTTAACTAATTAGTT-TCTTGTGTTTTATGAAATATAT
66 TCA-TG-TATTTTTT-TTTAAACATCATTTAACTAATTAGTTAT-TTGCGTTTTACGAAATAAAT
* ** * ** * ** * ***
33268609 CTCTCAAAACGTTGTTTTCTTGAATTCAAATTCAAATTCGAGGGGCAAGTGCGATAAATAG-AGG
127 CACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTA-G
* * * * ** * *
33268673 CCTTTATATAAATAGAATGCGCATGAGTTGCCGGGTGCGATTATATCAGTGCTAATGCTCTGGAT
191 CCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGAT
* * * *
33268738 CTCATTAGAACTCTGTAGTTAAGCGTGCCTTGGCG
256 CCCATCAGAACTCTGCAGTTAAGCGTG-CTGGGCG
* * * *
33268773 AGAGTAATGCTAGGATGGGTGACCTCCTGGAAAGTCCTCGTGTTGCACCCCTCCCTTTTTATATT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* * * * * * *
33268838 TCATGTA-ATTTTTTTAAATATAATTTAACTAATTACTTATTAGCATTTTACGAAATAAATTACT
66 TCATGTATTTTTTTTTAAACATCATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACT
** * * * *
33268902 TGAAACGTTATTTGGTCGAATTTGAATTCAAATTTTAAGAGGAAGTGCGATAAGGGGTAGCCTTC
131 TGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTT
** * *
33268967 ATATAAATAGGTTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCGGGA-CCAA
196 ATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCA-CCGGATCCCA
* * * *
33269031 TC-GAAGCTC-CCAAGATAAGCGAGCCTAGGCG
260 TCAGAA-CTCTGC-AGTTAAGCGTG-CTGGGCG
* * *
33269062 AGAGAAGTACTAGGATGGGTGACCTCCTAGGAAATCCTCGTGTTGCACCCCTCCCATTTT-TATT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
** ** * * * * ** *
33269126 TTGTGTAAGGTTTTTTAAAAAAT-GTTTACCTAATTAGTTATTTGTATTTTACTAAATAAATCAC
66 TCATGT-ATTTTTTTTTAAACATCATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCAC
* * * * *
33269190 TTGAAACATTATTTGGTCGAATTTGAATTCAAAGTC-ATGGCGTAAGGGCAATAAGGGGTAGCCT
130 TTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGA-GGCGCAAGTGCGATAAGGGGTAGCCT
* * * ** * *
33269254 TTATATAAGTAGATTGCGTAAGAGTTGATAGGTGTGATCATACCAGCACTAATAG-ACCGAATCC
194 TTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAAT-GCACCGGATCC
* * * * * **
33269318 CATCAGAACCCTGCAATCAATCATGCTTGGGAT
258 CATCAGAACTCTGCAGTTAAGCGTGC-TGGGCG
* * *
33269351 AGAGTAGTACAAGGATGGGTGACCTCCTGGGATGTACTCGTGTTGCACCCCTCCCATTTTATATT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* ** * *
33269416 TCATGTAACTTTTTTTTAAACATTGTTTAACTAATTACTTATTTGCGTTTAACGAAATAAATCAC
66 TCATGT-ATTTTTTTTTAAACATCATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCAC
* ** * * * * *
33269481 TTGAAATGTTATTTGGTTTAATTTGAATTAAAATTCGAGGTGCAAGTGTGATATGGGGTAGCTTT
130 TTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTT
* ** ** * *
33269546 TATATAAATAGAAGGCGCAAGAGTTGACGGGTATGATCATACCCTCACTAATACA-CTGATCCCA
195 TATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCA
* * * *
33269610 TCAGAACTCCGTAGTTAAACGTGCCTGGGTG
260 TCAGAACTCTGCAGTTAAGCGTG-CTGGGCG
* * * * * * **
33269641 ATAGTAGTACTAGGATGGGTGACTTCTTGGAAATTCCTCATGTTGCACCCCTCTAAATTTTATAT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC-CCATTTTATAT
* * * * * * *
33269706 TTCATGTA--ATTTTTTAAACATAATTGAGCTAATTACTTATTAGCATTTTACGAAATAAATCAC
65 TTCATGTATTTTTTTTTAAACATCATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCAC
* * * * * * *
33269769 TGGAAATGTTATTTGGTCGAATTTGAATTCAAATTCGAAGCGGAAATGTGATATGGGGTAGCCTT
130 TTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTT
* * * * **
33269834 TGTATAAATAGATTGCACAAGAGTTGACGAGTGAAAAT-ATACCAGCACTAATGCACCAGG-TCC
195 TATATAAATAGAATGCGCAAGAGTTGACGGGTG-CGATCATACCAGCACTAATGCACC-GGATCC
* * * * * *
33269897 AAACAGAACTCTCCAGATAAACGTGCCTAGGCG
258 CATCAGAACTCTGCAGTTAAGCGTG-CTGGGCG
*
33269930 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTTCCA-TTTATATT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* * * * * ** *
33269994 TTATGTAATTTTTTTTAAAAAACATTTACCTAATTAGTTATTTGCGTTTTATTAAATAAATCAGT
66 TCATGTATTTTTTTTTAAACATCATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACT
* * * * *
33270059 TGAAACAG-TATTTGGTCGAATTTGACTTCAAATTCGATGCACAAGGGCGATAAGGGGTAGCCCT
131 TGAAAC-GTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTT
* * * * * * *
33270123 TATATAAGTAGATTGCGTAAGAGTTGATGGGTGTGATCATACCAGCACCAATGGACCGGATCCCA
195 TATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCA
* ** * *
33270188 TCAAAACTCCACAGTTAAGCATGCTTGGGCA
260 TCAGAACTCTGCAGTTAAGCGTGC-TGGGCG
* * *
33270219 AGAGTAGTACTAGGATGGGTGACCGCCTGGGAAGTACTCGTGGTGCACCCCTCCCATTTTATATT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* * * *
33270284 TCATGTA------ATT-----T--TTTAACTAATTAGTTATTTACATTTAACGAAATAAATCACT
66 TCATGTATTTTTTTTTAAACATCATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACT
* * * * * * *
33270336 TGCAACGTGATTTGGTCGAATTTGAATTCAAATTTGATGCGTAAGTGTGATATGGGGTAGCCTTT
131 TGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTT
* * * *** *
33270401 ATATAAATTGAATGCGCAAGAGTTGACGGGTCCGATCATGCCCTTACTAATGCACCAGATCCCAT
196 ATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCAT
** * * * *
33270466 CAGATTTCCGCAGTCAAGCATGGTTGGGCG
261 CAGAACTCTGCAGTTAAGCGT-GCTGGGCG
*
33270496 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCACGTGTTGC-CCCCTTCCCATTTTATAT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCC-TCCCATTTTATAT
* *
33270560 TTCATGTAATTTTTTTCTTTAAACATCGTTTAACTAATTAGTTATATGCGTTTTACGAAATAAAT
65 TTCATGT-A-TTTTTT-TTTAAACATCATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAAT
* * * *
33270625 CACTTGAAGCATTATTTGGTTGAATTTGAATTCAAATTCGAGGTGCAAGTGCGATAAGGGGTAGC
127 CACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGC
* * * * *
33270690 CTTTATATAAAAAGAATGCGCAAGAGTTGACGGGGGCGACCATACCATCACTAATGCACTGGATC
192 CTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATC
* * * * *
33270755 CCATCAAAACTCTGCGGTTAACCGTGCACGGGCA
257 CCATCAGAACTCTGCAGTTAAGCGTGC-TGGGCG
* * * * * * *
33270789 AAAGTGGTACTAGCAT-GGTGACATCCAGGGAAGTCCTCGTGTTGCATCCCTTCCATTTTATATT
1 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
* * * * * * *
33270853 TCATTGAAATTTTTTTTGTTTAAACAACACTTAACAAATTAGTTATTTGCGTTTCATGAAATATA
66 TCA-TG---TATTTTTT-TTTAAACATCATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAA
* * * * *
33270918 TCACTTGAAACGTTGCTTT-TTCAAATTTGAATTCAAATTTGAGGTGCAAGTGCGATAAGGGGTA
126 TCACTTGAAACGTT-ATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTA
* * * *
33270982 G-CTTTATATAAATGGAATACGCAAGAGTTGATGGGTGCGATCATACCAGTACTAATGC
190 GCCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGC
33271040 TCAAAATCCC
Statistics
Matches: 3038, Mismatches: 590, Indels: 178
0.80 0.16 0.05
Matches are distributed among these distances:
276 5 0.00
277 221 0.07
278 2 0.00
284 2 0.00
285 1 0.00
286 120 0.04
287 114 0.04
288 280 0.09
289 893 0.29
290 181 0.06
291 257 0.08
292 353 0.12
293 498 0.16
294 106 0.03
295 4 0.00
296 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (289 bp):
AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATT
TCATGTATTTTTTTTTAAACATCATTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACT
TGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTT
ATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCAT
CAGAACTCTGCAGTTAAGCGTGCTGGGCG
Found at i:33269970 original size:868 final size:868
Alignment explanation
Indices: 33267032--33271039 Score: 4045
Period size: 868 Copynumber: 4.6 Consensus size: 868
33267022 ACCGGATCCC
* * *
33267032 AGAGTTGTACTAGGATGGGTAACCTCCTAGGAAGTCCTCGTGTTGCACCCCTC-CCATTTTATAT
1 AGAGTAGTACTAGGATGGGTGACCT-CTTGGAAGTCCTCGTGTTGCACCCCTCTCCATTTTATAT
* * *
33267096 TTCGTGTAATTTTTTTAAAACATAGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCAC
65 TTCATGTAATTTTTTT-AAACATAGTTTAACTAATTAGTTATTAGCATTTTACGAAATAAATCAC
* * *
33267161 TAGAAACGTTATTTGGTCGAATTTGAATT-AAATTCAAAGCGCAAGTGCGATAACGGGTAGCCTT
129 TTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAAGCGCAAGTGCGATAAGGGGTAGCCTT
* * * * * * * *
33267225 CATATAAATAAAATGCACAAGAGCTGACTGGTGCGATCATACTAGCACTAATGCACCGGATCCCA
194 TATATAAATAGATTGCACAAGAGTTGACGGGTGCAAT-ATACCAGCACTAATGCACAGGATCCCA
* * * *
33267290 TCAGAACTC-CGTAGTTAAGTGTG-CTCGGGCGAGAGTAGTACTAGGATGGTTGACCTCTTGGGA
258 TCAGAACTCTC-CAGTTAAGCGTGCCT-GGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGA
* * * * *
33267353 TGTCCTCGTGTTGCACACCTCCCA-TTTTATGTTTCATGTAATTTTTTTCTTTAAACATCGTTTA
321 AGTCCTCGTGTTGCACCCCTCCCATTTTTAT-TTTCATGTAATTTTTTTCTTAAAAAATCATTTA
* * * *
33267417 ACTAATTAGTTATTTGCGTTCTACGAAATAAATCACTTG-AACGGTTATTTGGTCAAATTTGAAT
385 ACTAATTAGTTATTTGCGTTTTACTAAATAAATCACTTGAAAC-ATTATTTGGTCGAATTTGAAT
** * * * *
33267481 TCAAATTCAAAGCGCAAGTGCGATAA-GGGTAGCCTTTATACGAA--AGAATGCCCAAGAACTT-
449 TCAAATTCATGGCGCAAGGGCGATAAGGGGTAGCCTTTATA-TAAGTAGAATGCGCAAG-AGTTG
* * * * * **
33267542 ATGGGTGCCATCATACCGGCACTAATGCATCGGATCCTATCAGAACAATGCAGTTAAG-AGTGCT
512 ATGGGTGCGATCATACCAGCACTAATGCACCGAATCCCATCAGAACCCTGCAGTTAAGCA-TGCT
* * * * * *
33267606 TGGGCGAGAGTTGTATTAGGATGGGTGACC-CCTAGGAAGTCCTCGTGTTGCA-CCC-CCTAATT
576 TGGG-AAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTACTCGTGTTGCACCCCTCCCATTT
* * * * *
33267668 TATATTTCAAGTAAAATTTTTTTAAATATATTTTAACAAATTAGTTATTTGCGTTTTACGAAA-A
640 TATATTTCATGT-AATTTTTTTTAAACAT-TTTTAACTAATTAGTTATTTGCGTTTAACGAAATA
* * * * *
33267732 CAATCACTTGAAACGGTATTTGGTAGAATTTGAATTCAAATTCGAGACACATGTGCGATA-AGGG
703 -AATCACTTGAAACGTTATTTGGTTGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATATAGGG
* ** * * * *
33267796 TAGCCTTTATATAAATAGAATGCGCAAGACTTGATAGGTGTGATCATACCCTCAATAATGCGCCG
767 TAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCCTCACTAATGCACTG
* *
33267861 AATCCCATCAGAACTCCGCATTTAAGCGTGCTTGGGCG
832 -ATCCCATCAGAACTCCGCAGTTAAGCGTGCCTGGGCG
* * * * *
33267899 AGAGTAGTACTAGAAT-GGTGACATCTTGGAATGTCCTCGTGTTGCACCACTC-CTATTTGATAT
1 AGAGTAGTACTAGGATGGGTGACCTCTTGGAA-GTCCTCGTGTTGCACCCCTCTCCATTTTATAT
* * *
33267962 TTGATGTAAGTTTTTTTAAACATCGTTTAACTAATTAGTTATTTGCATTTTACGAAATAAATCAC
65 TTCATGTAA-TTTTTTTAAACATAGTTTAACTAATTAGTTATTAGCATTTTACGAAATAAATCAC
* * ** * * **
33268027 TTGAAACATTATTCGGTTTAATTTGAATTCAAATTCGAGGCGCAAGTGCAATAAGGTATAGCCTT
129 TTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAAGCGCAAGTGCGATAAGGGGTAGCCTT
* ** ** *
33268092 TATATAAATAGAATTTGTA-AA-AGTTGACGGGTGCGACCATACCAGCTTTAATGCAGAGGATCC
194 TATATAAATAG-A-TTGCACAAGAGTTGACGGGTGC-AATATACCAGCACTAATGCACAGGATCC
* * * * * *
33268155 CATCAGAACTCTGCAGTTAATCGTGCTTGGGTGAGAGTCGTACTAGGATGGGTGACATCCTGGGA
256 CATCAGAACTCTCCAGTTAAGCGTGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGA
* * *
33268220 AGTCCTCGTGTTGCATCCCT-CCA-TTTTATTTTTCATGTAATTTTTTTCTTTAAACATCATTTA
321 AGTCCTCGTGTTGCACCCCTCCCATTTTTA-TTTTCATGTAATTTTTTTCTTAAAAAATCATTTA
* *
33268283 ACTAATTAGTTATTTGTGTTTTA-TGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTG-AT
385 ACTAATTAGTTATTTGCGTTTTACT-AAATAAATCACTTGAAACATTATTTGGTCGAATTTGAAT
* * * * *
33268346 ATAAAATTCGTGGTGC-AGGTGCGATAAGGGGTAGCCTTCATATAAATAGAATGCGCAAGAGTTG
449 -TCAAATTCATGGCGCAAGG-GCGATAAGGGGTAGCCTTTATATAAGTAGAATGCGCAAGAGTTG
* * * *
33268410 ACGGGCGCGATCATACCATCACTAATGCACC-AGATCCCATCAGAACTCTGCAGTTAAGCGTATG
512 ATGGGTGCGATCATACCAGCACTAATGCACCGA-ATCCCATCAGAACCCTGCAGTTAAGC--ATG
* * * ** * *
33268474 C-AGGCAAAAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTTTTTGTGTTGCACCCCTCCCGTT
574 CTTGGGAAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTACTCGTGTTGCACCCCTCCCATT
** ** * * *
33268538 TTATATTTCATTGATTTTTTTTCTTTAAACATCACTTAACTAATTAGTT-TCTTGTGTTTTATGA
639 TTATATTTCA-TG-TAATTTTT-TTTAAACAT-TTTTAACTAATTAGTTAT-TTGCGTTTAACGA
* * ** * ** ** *
33268602 AATATATCTCTCAAAACGTTGTTTTCTTGAATTCAAATTCAAATTCGAGGGGCAAGTGCGATAAA
699 AATAAATCACTTGAAACGTTATTTGGTTGAATTTGAATTCAAATTCGAGGCGCAAGTGCGAT--A
* * * * ** *
33268667 TAGAG--GCCTTTATATAAATAGAATGCGCATGAGTTGCCGGGTGCGATTATATCAGT-GCTAAT
762 TAGGGTAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATA-CCCTCACTAAT
* * * * * *
33268729 GCTCTGGATCTCATTAGAACTCTGTAGTTAAGCGTGCCTTGGCG
826 GCACT-GATCCCATCAGAACTCCGCAGTTAAGCGTGCCTGGGCG
* * * *
33268773 AGAGTAATGCTAGGATGGGTGACCTCCTGGAAAGTCCTCGTGTTGCACCCCTC-CCTTTTTATAT
1 AGAGTAGTACTAGGATGGGTGACCTCTTGG-AAGTCCTCGTGTTGCACCCCTCTCCATTTTATAT
* * * *
33268837 TTCATGTAATTTTTTTAAATATAATTTAACTAATTACTTATTAGCATTTTACGAAATAAATTACT
65 TTCATGTAATTTTTTTAAACATAGTTTAACTAATTAGTTATTAGCATTTTACGAAATAAATCACT
** * * *
33268902 TGAAACGTTATTTGGTCGAATTTGAATTCAAATTTTAAGAGGAAGTGCGATAAGGGGTAGCCTTC
130 TGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAAGCGCAAGTGCGATAAGGGGTAGCCTTT
* * * * *
33268967 ATATAAATAGGTTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCATCGGGA-CCAA
195 ATATAAATAGATTGCACAAGAGTTGACGGGTGCAAT-ATACCAGCACTAATGCA-CAGGATCCCA
* * * * *
33269031 TC-GAAGCTC-CCAAGATAAGCGAGCCTAGGCGAGAGAAGTACTAGGATGGGTGACCTCCTAGGA
258 TCAGAA-CTCTCC-AGTTAAGCGTGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGA
* * ** * *
33269094 AATCCTCGTGTTGCACCCCTCCCATTTTTATTTT-GTGTAA-GGTTTT-TTAAAAAAT-GTTTAC
321 AGTCCTCGTGTTGCACCCCTCCCATTTTTATTTTCATGTAATTTTTTTCTTAAAAAATCATTTAA
**
33269155 CTAATTAGTTATTTGTATTTTACTAAATAAATCACTTGAAACATTATTTGGTCGAATTTGAATTC
386 CTAATTAGTTATTTGCGTTTTACTAAATAAATCACTTGAAACATTATTTGGTCGAATTTGAATTC
* * * * * *
33269220 AAAGTCATGGCGTAAGGGCAATAAGGGGTAGCCTTTATATAAGTAGATTGCGTAAGAGTTGATAG
451 AAATTCATGGCGCAAGGGCGATAAGGGGTAGCCTTTATATAAGTAGAATGCGCAAGAGTTGATGG
* * * *
33269285 GTGTGATCATACCAGCACTAATAG-ACCGAATCCCATCAGAACCCTGCAATCAATCATGCTTGGG
516 GTGCGATCATACCAGCACTAAT-GCACCGAATCCCATCAGAACCCTGCAGTTAAGCATGCTTGGG
* * *
33269349 ATAGAGTAGTACAAGGATGGGTGACCTCCTGGGATGTACTCGTGTTGCACCCCTCCCATTTTATA
580 A-AGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTACTCGTGTTGCACCCCTCCCATTTTATA
*
33269414 TTTCATGTAACTTTTTTTTAAACATTGTTTAACTAATTACTTATTTGCGTTTAACGAAATAAATC
644 TTTCATGTAA-TTTTTTTTAAACATT-TTTAACTAATTAGTTATTTGCGTTTAACGAAATAAATC
* * * * * * *
33269479 ACTTGAAATGTTATTTGGTTTAATTTGAATTAAAATTCGAGGTGCAAGTGTGATATGGGGTAGCT
707 ACTTGAAACGTTATTTGGTTGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATATAGGGTAGCC
* ** *
33269544 TTTATATAAATAGAAGGCGCAAGAGTTGACGGGTATGATCATACCCTCACTAATACACTGATCCC
772 TTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCCTCACTAATGCACTGATCCC
* * *
33269609 ATCAGAACTCCGTAGTTAAACGTGCCTGGGTG
837 ATCAGAACTCCGCAGTTAAGCGTGCCTGGGCG
* * * * **
33269641 ATAGTAGTACTAGGATGGGTGACTTCTTGGAAATTCCTCATGTTGCACCCCTCTAAATTTTATAT
1 AGAGTAGTACTAGGATGGGTGACCTCTTGG-AAGTCCTCGTGTTGCACCCCTCTCCATTTTATAT
* * * *
33269706 TTCATGTAA-TTTTTTAAACATAATTGAGCTAATTACTTATTAGCATTTTACGAAATAAATCACT
65 TTCATGTAATTTTTTTAAACATAGTTTAACTAATTAGTTATTAGCATTTTACGAAATAAATCACT
* * * * * *
33269770 GGAAATGTTATTTGGTCGAATTTGAATTCAAATTCGAAGCGGAAATGTGATATGGGGTAGCCTTT
130 TGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAAGCGCAAGTGCGATAAGGGGTAGCCTTT
* * * *
33269835 GTATAAATAGATTGCACAAGAGTTGACGAGTGAAAATATACCAGCACTAATGCACCAGG-TCCAA
195 ATATAAATAGATTGCACAAGAGTTGACGGGTG-CAATATACCAGCACTAATGCA-CAGGATCCCA
* * * *
33269899 ACAGAACTCTCCAGATAAACGTGCCTAGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG
258 TCAGAACTCTCCAGTTAAGCGTGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG
* * *
33269964 TCCTCGTGTTGCACCCCTTCCATTTATATTTT-ATGTAA-TTTTTT-TTAAAAAA-CATTTACCT
323 TCCTCGTGTTGCACCCCTCCCATTTTTATTTTCATGTAATTTTTTTCTTAAAAAATCATTTAACT
* * * *
33270025 AATTAGTTATTTGCGTTTTATTAAATAAATCAGTTGAAACAGTATTTGGTCGAATTTGACTTCAA
388 AATTAGTTATTTGCGTTTTACTAAATAAATCACTTGAAACATTATTTGGTCGAATTTGAATTCAA
* * * *
33270090 ATTCGAT-GCACAAGGGCGATAAGGGGTAGCCCTTATATAAGTAGATTGCGTAAGAGTTGATGGG
453 ATTC-ATGGCGCAAGGGCGATAAGGGGTAGCCTTTATATAAGTAGAATGCGCAAGAGTTGATGGG
* * * * * *
33270154 TGTGATCATACCAGCACCAATGGACCGGATCCCATCAAAACTCC-ACAGTTAAGCATGCTTGGGC
517 TGCGATCATACCAGCACTAATGCACCGAATCCCATCAGAAC-CCTGCAGTTAAGCATGCTTGGG-
* * *
33270218 AAGAGTAGTACTAGGATGGGTGACCGCCTGGGAAGTACTCGTGGTGCACCCCTCCCATTTTATAT
580 AAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTACTCGTGTTGCACCCCTCCCATTTTATAT
* *
33270283 TTCATGTAA-------T-----TTTTTAACTAATTAGTTATTTACATTTAACGAAATAAATCACT
645 TTCATGTAATTTTTTTTAAACATTTTTAACTAATTAGTTATTTGCGTTTAACGAAATAAATCACT
* * * * * * * *
33270336 TGCAACGTGATTTGGTCGAATTTGAATTCAAATTTGATGCGTAAGTGTGATATGGGGTAGCCTTT
710 TGAAACGTTATTTGGTTGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATATAGGGTAGCCTTT
* * * * *
33270401 ATATAAATTGAATGCGCAAGAGTTGACGGGTCCGATCATGCCCTTACTAATGCACCAGATCCCAT
775 ATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCCTCACTAATGCA-CTGATCCCAT
** * * **
33270466 CAGATTTCCGCAGTCAAGCATGGTTGGGCG
839 CAGAACTCCGCAGTTAAGCGTGCCTGGGCG
* *
33270496 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCACGTGTTGC-CCCCT-TCCCATTTTATA
1 AGAGTAGTACTAGGATGGGTGACCT-CTTGGAAGTCCTCGTGTTGCACCCCTCT-CCATTTTATA
* *
33270559 TTTCATGTAATTTTTTTCTTTAAACATCGTTTAACTAATTAGTTA-TATGCGTTTTACGAAATAA
64 TTTCATGTAA---TTTT-TTTAAACATAGTTTAACTAATTAGTTATTA-GCATTTTACGAAATAA
* * * * *
33270623 ATCACTTGAAGCATTATTTGGTTGAATTTGAATTCAAATTCGAGGTGCAAGTGCGATAAGGGGTA
124 ATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAAGCGCAAGTGCGATAAGGGGTA
* * * * ** * *
33270688 GCCTTTATATAAAAAGAATGCGCAAGAGTTGACGGGGGCGACCATACCATCACTAATGCACTGGA
189 GCCTTTATATAAATAGATTGCACAAGAGTTGACGGGTGC-AATATACCAGCACTAATGCACAGGA
* * * * * * * * * *
33270753 TCCCATCAAAACTCTGCGGTTAACCGTGCAC-GGGCAAAAGTGGTACTAGCAT-GGTGACATCCA
253 TCCCATCAGAACTCTCCAGTTAAGCGTGC-CTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCT
* * * * *
33270816 GGGAAGTCCTCGTGTTGCATCCCTTCCA-TTTTATATTTCATTGAAATTTTTTTTGTTTAAACAA
317 GGGAAGTCCTCGTGTTGCACCCCTCCCATTTTTAT-TTTCA-TGTAA-TTTTTTT-CTTAAAAAA
* * * * * * * *
33270880 -CACTTAACAAATTAGTTATTTGCGTTTCA-TGAAATATATCACTTGAAACGTTGCTTT-TTCAA
378 TCATTTAACTAATTAGTTATTTGCGTTTTACT-AAATAAATCACTTGAAACATT-ATTTGGTCGA
* * * * * *
33270942 ATTTGAATTCAAATTTGA-GGTGCAAGTGCGATAAGGGGTAG-CTTTATATAAATGGAATACGCA
441 ATTTGAATTCAAA-TTCATGGCGCAAGGGCGATAAGGGGTAGCCTTTATATAAGTAGAATGCGCA
*
33271005 AGAGTTGATGGGTGCGATCATACCAGTACTAATGC
505 AGAGTTGATGGGTGCGATCATACCAGCACTAATGC
33271040 TCAAAATCCC
Statistics
Matches: 2607, Mismatches: 444, Indels: 184
0.81 0.14 0.06
Matches are distributed among these distances:
853 1 0.00
854 162 0.06
855 67 0.03
856 4 0.00
857 5 0.00
858 47 0.02
859 179 0.07
860 6 0.00
862 6 0.00
863 48 0.02
864 84 0.03
865 15 0.01
866 222 0.09
867 184 0.07
868 662 0.25
869 185 0.07
870 17 0.01
871 229 0.09
872 24 0.01
873 88 0.03
874 302 0.12
875 60 0.02
876 10 0.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (868 bp):
AGAGTAGTACTAGGATGGGTGACCTCTTGGAAGTCCTCGTGTTGCACCCCTCTCCATTTTATATT
TCATGTAATTTTTTTAAACATAGTTTAACTAATTAGTTATTAGCATTTTACGAAATAAATCACTT
GAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAAGCGCAAGTGCGATAAGGGGTAGCCTTTA
TATAAATAGATTGCACAAGAGTTGACGGGTGCAATATACCAGCACTAATGCACAGGATCCCATCA
GAACTCTCCAGTTAAGCGTGCCTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC
TCGTGTTGCACCCCTCCCATTTTTATTTTCATGTAATTTTTTTCTTAAAAAATCATTTAACTAAT
TAGTTATTTGCGTTTTACTAAATAAATCACTTGAAACATTATTTGGTCGAATTTGAATTCAAATT
CATGGCGCAAGGGCGATAAGGGGTAGCCTTTATATAAGTAGAATGCGCAAGAGTTGATGGGTGCG
ATCATACCAGCACTAATGCACCGAATCCCATCAGAACCCTGCAGTTAAGCATGCTTGGGAAGAGT
AGTACTAGGATGGGTGACCTCCTAGGAAGTACTCGTGTTGCACCCCTCCCATTTTATATTTCATG
TAATTTTTTTTAAACATTTTTAACTAATTAGTTATTTGCGTTTAACGAAATAAATCACTTGAAAC
GTTATTTGGTTGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATATAGGGTAGCCTTTATATAA
ATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCCTCACTAATGCACTGATCCCATCAGAACT
CCGCAGTTAAGCGTGCCTGGGCG
Found at i:33271994 original size:288 final size:290
Alignment explanation
Indices: 33271052--33272352 Score: 1632
Period size: 288 Copynumber: 4.5 Consensus size: 290
33271042 AAAATCCCAT
* * * *
33271052 CGAAATAAATCACTTGAAACGTTATTTGGTCAAATTTGAATTCAATTTCGAGGCACAAGTGCGAT
1 CGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTACGAT
* * *
33271117 AAGGAGTAACCTTTATATAAGTAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAAT
66 AAGGGGTAACCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGAACATACCAGCACTAAT
* * ** * *
33271182 GCACTGGATCCTATCAGAACTCCGAAGTTAAGTGTGCTTGGGCGAGAGTAGTGCTAGGACGGGTG
131 GCACCGGATCCCATCAGAACTCCGAAGTTAAGCATGCTTGGGCGAGAGTAGTACTAGGATGGGTG
* ** * * * *
33271247 ATCTCCCAGCAAGTCC-CTGTGTTGCAGCCTTCCCATTTTATATTTCATGTAATTTTTTTTAAAA
196 ACCTCCTGGAAAGTCCTC-GTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTTTTAAAC
* *
33271311 AAAGTTTAACTAATTAGTTATTTGAG-TTTA
260 ATAGTTTAACTAATTAGTTATTTGCGTTTTA
* * * **
33271341 CGAAATAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCTCAAGGGCGAT
1 CGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTACGAT
* * * * * * *
33271406 AAGGGGTAGCTTTTACATAAATAGATTGTGCAAGAGTTGACGAGTGCGATGC-TACCAGCACTAA
66 AAGGGGTAACCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGA-ACATACCAGCACTAA
* * *
33271470 TACACCGGATCCCATCAGAACTTCGAAGGTAAGCATGCTT-GGCTGAGAGTAGTACTAGGATGGG
130 TGCACCGGATCCCATCAGAACTCCGAAGTTAAGCATGCTTGGGC-GAGAGTAGTACTAGGATGGG
*
33271534 TGACCTCCTGGGAAA-TCCTCGTGTTGCACCCCTCCCATTTTATAGTTCATGTAATTGTTTTCTT
194 TGACCTCCT-GGAAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATT-TTTT-TT
* * *
33271598 AATAGATCGTTTAACTAATTAGTTATTTGTGTTTTA
256 AA-ACATAGTTTAACTAATTAGTTATTTGCGTTTTA
* * * * * *
33271634 CGAAATAAATCACTTGAAATGTTATTTCGTCGAATTTGACTTCAAATTCAAGGCGCAA-AAGGGA
1 CGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTA-CGA
* * ** * * * * *
33271698 TAAGGGGTACCCTTTATATAAATGGAATGCGCAAGAACTGATGGGTGCAAAAATTCCAGCACTAT
65 TAAGGGGTAACCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGAACATACCAGCACTAA
* * * * * * * *
33271763 TGCACCGAATCCCATTAGAACTCCGCAGCTAAGCGTGCTTGGGCGAGAGTAGCACTGGGATTGGT
130 TGCACCGGATCCCATCAGAACTCCGAAGTTAAGCATGCTTGGGCGAGAGTAGTACTAGGATGGGT
* *
33271828 GACCTCCTGGAAAGTCCTCGTGTTGCACCCCTCCCGTTTTATATTTCGTGT-A-TTTTTTTAAAC
195 GACCTCCTGGAAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTTTTAAAC
*
33271891 ATAGTTTAACTAATTAGGTATTTGCGTTTTA
260 ATAGTTTAACTAATTAGTTATTTGCGTTTTA
* * *
33271922 CGAAATAAATCACTTGAAACATTATTTCGTCGAATTTGAATTCAAATTCGAGGCGCAAGTACGGT
1 CGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTACGAT
** * *
33271987 AAGGGGTAGTCTTTATATAAATAGAGTGCGCAGGAGTTGACGGGTGCGAACATACCAGCACTAAT
66 AAGGGGTAACCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGAACATACCAGCACTAAT
* * * * * *
33272052 GTACCGGTTCCCATCAGAACTCCGCAGTTAAGCATGCTTAAGG-TAGAGTTGTACTAGGATGGGT
131 GCACCGGATCCCATCAGAACTCCGAAGTTAAGCATGCTT-GGGCGAGAGTAGTACTAGGATGGGT
*
33272116 GACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTATTTTTAAA
195 GACCTCCTGGAAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTT-TTTTTAAA
*
33272181 CATTGTTTAACTAATTAGTTATTTGCGTTTTA
259 CATAGTTTAACTAATTAGTTATTTGCGTTTTA
33272213 CGAAATAAATCACTTGAAACGTTATTTGGAT-GAATTTGAATTCAAATTCGAGGCGCAAGTACGA
1 CGAAATAAATCACTTGAAACGTTATTTGG-TCGAATTTGAATTCAAATTCGAGGCGCAAGTACGA
* * * * * *
33272277 TAAGGGGCAAGCTTTATATAAATAGAATGCACAAGAGTTGACGGGTGTGATCATACCAGCAATAA
65 TAAGGGGTAACCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGAACATACCAGCACTAA
*
33272342 TGCGCCGGATC
130 TGCACCGGATC
33272353 TGTAACAGCC
Statistics
Matches: 866, Mismatches: 128, Indels: 34
0.84 0.12 0.03
Matches are distributed among these distances:
288 238 0.27
289 214 0.25
290 15 0.02
291 166 0.19
292 31 0.04
293 199 0.23
294 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (290 bp):
CGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTACGAT
AAGGGGTAACCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGAACATACCAGCACTAAT
GCACCGGATCCCATCAGAACTCCGAAGTTAAGCATGCTTGGGCGAGAGTAGTACTAGGATGGGTG
ACCTCCTGGAAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTTTTAAACA
TAGTTTAACTAATTAGTTATTTGCGTTTTA
Found at i:33272156 original size:581 final size:580
Alignment explanation
Indices: 33271052--33272323 Score: 1673
Period size: 581 Copynumber: 2.2 Consensus size: 580
33271042 AAAATCCCAT
* * * **
33271052 CGAAATAAATCACTTGAAACGTTATTTGGTCAAATTTGAATTCAATTTCGAGGCACAAGTGCGAT
1 CGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAAAGCGAT
* * ** * **
33271117 AAGGAGTAACCTTTATATAAGTAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAAT
66 AAGGGGTAACCTTTATATAAATAGAATGCGCAAGAACTGACGGGTGCAAAAATACCAGCACTAAT
* * * * * **
33271182 GCACTGGATCCTATCAGAACTCCGAAGTTAAGTGTGCTTGGGCGAGAGTAGTGCTAGGACGGGTG
131 GCACCGAATCCCATCAGAACTCCGAAGCTAAGCGTGCTTGGGCGAGAGTAGCACTAGGACGGGTG
* * * *
33271247 ATCTCCCAGCAAGTCCCTGTGTTGCAGCCTTCCCATTTTATATTTCATGTAATTTTTTTTAAAAA
196 ACCTCCCAGAAAGTCCCTGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTTTTAAAAA
* * * *
33271312 AAGTTTAACTAATTAGTTATTTGAGTTTACGAAATAAATCGCTTGAAACGTTATTTGGTCGAATT
261 AAGTTTAACTAATTAGGTATTTGAGTTTACGAAATAAATCACTTGAAACATTATTTCGTCGAATT
* * * * *
33271377 TGAATTCAAATTTGAGGCTCAAGGGCGATAAGGGGTAGCTTTTACATAAATAGATTGTGCAAGAG
326 TGAATTCAAATTCGAGGCGCAAGGACGATAAGGGGTAGCTTTTACATAAATAGAGTGCGCAAGAG
* *
33271442 TTGACGAGTGCGATGCTACCAGCACTAATACACCGGATCCCATCAGAACTTCGAAGGTAAGCATG
391 TTGACGAGTGCGATACTACCAGCACTAATACACCGGATCCCATCAGAACTCCGAAGGTAAGCATG
33271507 CTTGGCTGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAATCCTCGTGTTGCACCCCTCCCAT
456 CTTGGCTGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAATCCTCGTGTTGCACCCCTCCCAT
* *
33271572 TTTATAGTTCATGTAATTGT-TTTCTTAATAGATCGTTTAACTAATTAGTTATTTGTGTTTTA
521 TTTATAGTTCATGTAATT-TATTT-TTAA-ACATCGTTTAACTAATTAGTTATTTGCGTTTTA
* * * * *
33271634 CGAAATAAATCACTTGAAATGTTATTTCGTCGAATTTGACTTCAAATTCAAGGCGCAAAAGGGAT
1 CGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAAAGCGAT
* * * * *
33271699 AAGGGGTACCCTTTATATAAATGGAATGCGCAAGAACTGATGGGTGCAAAAATTCCAGCACTATT
66 AAGGGGTAACCTTTATATAAATAGAATGCGCAAGAACTGACGGGTGCAAAAATACCAGCACTAAT
* * * **
33271764 GCACCGAATCCCATTAGAACTCCGCAGCTAAGCGTGCTTGGGCGAGAGTAGCACTGGGATTGGTG
131 GCACCGAATCCCATCAGAACTCCGAAGCTAAGCGTGCTTGGGCGAGAGTAGCACTAGGACGGGTG
** * * *
33271829 ACCTCCTGGAAAGT-CCTCGTGTTGCACCCCTCCCGTTTTATATTTCGTGT-A-TTTTTTTAAAC
196 ACCTCCCAGAAAGTCCCT-GTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTTTTAAAA
* *
33271891 ATAGTTTAACTAATTAGGTATTTGCGTTTTACGAAATAAATCACTTGAAACATTATTTCGTCGAA
260 AAAGTTTAACTAATTAGGTATTTGAG-TTTACGAAATAAATCACTTGAAACATTATTTCGTCGAA
* * * *
33271956 TTTGAATTCAAATTCGAGGCGCAAGTACGGTAAGGGGTAG-TCTTTATATAAATAGAGTGCGCAG
324 TTTGAATTCAAATTCGAGGCGCAAGGACGATAAGGGGTAGCT-TTTACATAAATAGAGTGCGCAA
* ** * * *
33272020 GAGTTGACGGGTGCGA-ACATACCAGCACTAATGTACCGGTTCCCATCAGAACTCCGCAGTTAAG
388 GAGTTGACGAGTGCGATAC-TACCAGCACTAATACACCGGATCCCATCAGAACTCCGAAGGTAAG
* *
33272084 CATGCTTAAGG-T-AGAGTTGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCC
452 CATGCTT--GGCTGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAATCCTCGTGTTGCACCCC
* *
33272147 TCCCATTTTATATTTCATGTAATTTATTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTT
515 TCCCATTTTATAGTTCATGTAATTTATTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTT
33272212 A
580 A
*
33272213 CGAAATAAATCACTTGAAACGTTATTTGGAT-GAATTTGAATTCAAATTCGAGGCGCAAGTA-CG
1 CGAAATAAATCACTTGAAACGTTATTTGG-TCGAATTTGAATTCAAATTCGAGGCGCAA-AAGCG
* * * **
33272276 ATAAGGGGCAAGCTTTATATAAATAGAATGCACAAGAGTTGACGGGTG
64 ATAAGGGGTAACCTTTATATAAATAGAATGCGCAAGAACTGACGGGTG
33272324 TGATCATACC
Statistics
Matches: 595, Mismatches: 86, Indels: 21
0.85 0.12 0.03
Matches are distributed among these distances:
579 123 0.21
580 42 0.07
581 228 0.38
582 200 0.34
583 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (580 bp):
CGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAAAGCGAT
AAGGGGTAACCTTTATATAAATAGAATGCGCAAGAACTGACGGGTGCAAAAATACCAGCACTAAT
GCACCGAATCCCATCAGAACTCCGAAGCTAAGCGTGCTTGGGCGAGAGTAGCACTAGGACGGGTG
ACCTCCCAGAAAGTCCCTGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTTTTAAAAA
AAGTTTAACTAATTAGGTATTTGAGTTTACGAAATAAATCACTTGAAACATTATTTCGTCGAATT
TGAATTCAAATTCGAGGCGCAAGGACGATAAGGGGTAGCTTTTACATAAATAGAGTGCGCAAGAG
TTGACGAGTGCGATACTACCAGCACTAATACACCGGATCCCATCAGAACTCCGAAGGTAAGCATG
CTTGGCTGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAATCCTCGTGTTGCACCCCTCCCAT
TTTATAGTTCATGTAATTTATTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTA
Found at i:33273216 original size:30 final size:30
Alignment explanation
Indices: 33273173--33273231 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
33273163 AATTTATGGG
* *
33273173 CCTAAGGGTAAAATGGTCATTTTGTCAAAT
1 CCTAAGGGCAAAATGGTCATTTTGCCAAAT
*
33273203 CCTAGGGGCAAAATGGTCATTTTGCCAAA
1 CCTAAGGGCAAAATGGTCATTTTGCCAAA
33273232 AATGTAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (30 bp):
CCTAAGGGCAAAATGGTCATTTTGCCAAAT
Found at i:33273968 original size:46 final size:47
Alignment explanation
Indices: 33273754--33274066 Score: 204
Period size: 46 Copynumber: 6.6 Consensus size: 47
33273744 TTTGTGTGCT
* *
33273754 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTAT-TAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGA-GATGTAG-G-C
* * * * *
33273800 TGTGTAAGACCATGTCTAGGACATGACATCGGC-ATTGAGACG-AGCGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-CGAGATGTAG-GC
* *
33273847 TAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCT-CGAGATGTAAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTACGAGATGT-AGGC
* * * * * *
33273894 AGTGTGAGA-CATATCCGGAACAT-ACATCGGCTACGAGATGT-GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTAGGC
*
33273938 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGGATATGTGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTAC-GAGATGT-AG-GC
* * **
33273987 TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCT-CAATTTTGATAGGC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTACGA-GATG-TAGGC
*
33274037 AGTGTAAGACCATGTCTGAGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
33274067 AGCATTATAC
Statistics
Matches: 212, Mismatches: 33, Indels: 41
0.74 0.12 0.14
Matches are distributed among these distances:
44 10 0.05
45 15 0.07
46 63 0.30
47 30 0.14
48 22 0.10
49 30 0.14
50 34 0.16
51 7 0.03
52 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTAGGC
Found at i:33274060 original size:49 final size:49
Alignment explanation
Indices: 33273937--33274066 Score: 158
Period size: 50 Copynumber: 2.6 Consensus size: 49
33273927 CGAGATGTGT
* **
33273937 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAG
1 CAGTGTAAGACCATGTCTGAGACATGGCATCGGCACCAATATGTGAGAG
* *
33273986 CTAGTGTAAGACCATGTCT-AGGACATGGCATCGGC-CTCAAT-TTTGATAGG
1 C-AGTGTAAGACCATGTCTGA-GACATGGCATCGGCAC-CAATATGTGAGA-G
33274036 CAGTGTAAGACCATGTCTGAGACATGGCATC
1 CAGTGTAAGACCATGTCTGAGACATGGCATC
33274067 AGCATTATAC
Statistics
Matches: 71, Mismatches: 5, Indels: 10
0.83 0.06 0.12
Matches are distributed among these distances:
49 35 0.49
50 36 0.51
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGAGACATGGCATCGGCACCAATATGTGAGAG
Found at i:33276263 original size:583 final size:581
Alignment explanation
Indices: 33275103--33282682 Score: 8926
Period size: 583 Copynumber: 13.0 Consensus size: 581
33275093 AAATTACTTA
* * * * *
33275103 TTAT-TTTCATGTAA--TTTATTTTTAAATATAGTTTAAGTAATTAGTTATTTGCATTTTACGAA
1 TTATATTTCATGTAATTTTTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAA
** * *
33275165 ATAAATTACTTGAAACGTTATTTAGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGG
66 ATAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGG
* * * * *
33275230 GGTAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGAT-CATTCCAGTACTAATGTA
131 GGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGC-TACCAGCACTAATGCA
* * * * *
33275294 CCGGATCTCATCAGAACTCCGCAGTTAAGCATGCTTGGGCTAGAGTTGTACTCGGATGGGTGACC
195 CCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACC
* * ** * *
33275359 TCCTGGGAAGTCCTCGGGTTGCACCCTTCCCCTTTTATATTTCATGTAATTTTTTTAAACATTGT
260 TCCTGGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATTTCATGTAATTTTTTTTAACATCGT
* * * * * *
33275424 TTAACTAATTAGTTATTTGTGATTTATGAAATAAATCGCTTGAAATGTTACTTGGTCGAATTTGA
325 TTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGA
* * * *
33275489 ATTCAAATTTGAGGCGCAAGTGCGATATGGGGTAGCCTTTACATAAATGGATTGCGCAAGAGTTG
390 ATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTG
*
33275554 ACGGGTTAGATTATACCAGCACTAATGCACCGAATCCCATCAAAACTCCGCAGTTAAGCATGCTT
455 ACGGGTTAGATTATACCAGCACTAATGCACCG-ATCCCATCAAAACTCCGCAGTTAAGCGTGCTT
**
33275619 GGGCTAGAGTAGTACTAGGATGGGTGGCCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
519 GGGCTAGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * *
33275682 ATATATTTCGTGTAATTTTTTTTGTTTTAAACATTTTTTAACTATTTAGTTATTTGCG-TTTACG
1 TTATATTTCATGTAA-TTTTTTT-TTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACG
* * * **
33275746 AAATAAATCGCTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCACACGTATGATAA
64 AAATAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAA
* * * *
33275811 GGGGTAGCTTTTACATAAATAGATTGCGCAAGAGTTGATGGGTGCGATGCTACTAGAACTAATGC
129 GGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGCTACCAGCACTAATGC
* * * * * *
33275876 ACCAGATCCCATCAGAACTCCGAAGGTAAGCATGCTT-GGCTGAGAGTAGTATTTGTATGGGTGA
194 ACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGTGA
* *
33275940 CCTCCTAGGAAGTCCTCGTGTTGCACCCCTCTTATTTTATATTTCATGTAATTTTTTTTAACATC
258 CCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATTTCATGTAATTTTTTTTAACATC
* * * *
33276005 GTTTAACTAATTAGTTATTTGCGTTTTTCGCAATAAATCACTTGAAACGTTATTTGATCAAATTT
323 GTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCGAATTT
*
33276070 GAATTCAAATTCGAGGCACAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGT
388 GAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGT
* * *
33276135 TGACGGGTTAGATTATACTAGCGCTAATGCACCAGATCCCATCAAAACTCCGTAGTTAAGCGTGC
453 TGACGGGTTAGATTATACCAGCACTAATGCACC-GATCCCATCAAAACTCCGCAGTTAAGCGTGC
* * *
33276200 TTGGGCGAGAGTAGTACTAGGATGGGTGATCACCTGGGAAGTCCTCGTGTTGCACCTCTCCCATT
517 TTGGGCTAGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * *
33276265 TTATATTTCATGTAATTTTTTTATTTTTAAACATAGTTTAATTAATTAGTTATTTGTGTTTTATG
1 TTATATTTCATGTAA-TTTTTT-TTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACG
* *
33276330 AAATAAATCGCTTGAAACATTACTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAA
64 AAATAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAA
* * * *
33276395 GGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACAGGTGCGATGATACTAGCTCTAATGC
129 GGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGCTACCAGCACTAATGC
* * ** * **
33276460 ATCGGATCCCATTAGAACTTTGCAGTTAAATGTGCTTGGG-TGAGAGTAGTACTAGGATGGGTGA
194 ACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGTGA
* *
33276524 CCTCCTAGGAAGTCCTCGTGTTGCACCCCT-CTCATTTTATATTTTATGTAA-TTTTTTTAACAT
258 CCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCT-ATTTTATATTTCATGTAATTTTTTTTAACAT
* * *
33276587 CGTTTAACTAATTAGTTATTAGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTTGAATG
322 CGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCGAATT
* * * *
33276652 TGATTTCTAATTCGAGGCACAAGTGCGATAAGGGGTAGCTTTTATATAAATAGATTGCGCAAGAG
387 TGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAG
*
33276717 TTGACGAGTTAGATTATACCAGCACTAATGCACCAGATCCCATCAAAACTCCGCAGTTAAGCGTG
452 TTGACGGGTTAGATTATACCAGCACTAATGCACC-GATCCCATCAAAACTCCGCAGTTAAGCGTG
* * * *
33276782 CTTGGGCGAGAGCAGTACTAGGATGGGTGATCTCTTGGGAAGCCCTCGTGTTGCACCCCTCCCAT
516 CTTGGGCTAGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCAT
33276847 T
581 T
* * *
33276848 TTATATTTCATGTATTTTTTTTTGTTTGTTAAACATTGTTTAACTAATTAGTTATTTGTGTCTTA
1 TTATATTTCATGTA--ATTTTTT-TTT-TTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTA
* * * * * *
33276913 CGAAAAAAATCACTTGAAATGTTATTTGGTCGAAATTCAATTCAAATTTGAGGCGCAAGTGCGAA
62 CGAAATAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGAT
* *
33276978 AAGGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGTGTGCGATGATACCAGCACTAAT
127 AAGGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGCTACCAGCACTAAT
* * * * * *
33277043 GCACCGGATCCCATTAGAACTCC-ACAGTTAAGCATGCTTAGGCAAGAGTAGTACTGGGACGGGT
192 GCACCGGATCCCATCAGAACTCCGA-AGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGT
* * * * *
33277107 GATCTCTTGGAAATTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTATTTTTAAA
256 GACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATTTCATGTAATTT-TTTTT-AA
* * * *
33277172 CATCGTTTAACTAATTAGTTATTTGCGTTTTATGAAATAAAACACTTGAAACCTTATTTGGTTGA
319 CATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCGA
* * * * *
33277237 ATTTGAATTCAAATTCGAGGCGAAAGTTCGATAAGGGATAGCCTTTATATAAATATAATGCGCAA
384 ATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAA
* ** * * * * * *
33277302 GAGTTGACAGGTGCGATCATACAAGCACTAATGCACTCGAACCCATCAGAACCCCGTAGTTAAGC
449 GAGTTGACGGGTTAGATTATACCAGCACTAATGCAC-CGATCCCATCAAAACTCCGCAGTTAAGC
* * * * * * *
33277367 GTGCCTGGGCTACAGTTGTACTAGGATGTGTGACCTCCTGGGAAGTTCTCATGTTGCACCCCTCC
513 GTGCTTGGGCTAGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCACCCCTCC
*
33277432 TATT
578 CATT
* * * * *
33277436 TTATATTTCATGTAA--TTTATTTGTAAACATAGTTTAAGTAATTACTTATTTGCGTTTTACGAA
1 TTATATTTCATGTAATTTTTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAA
** * *
33277499 ATAAATTACTTGAAATGTTATTTAGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGG
66 ATAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGG
* * * * * * * *
33277564 GGTAGCCTTTATATGAATAGAATGTGCGAGAGTTGATGGGTGCGAT-CATACCAGTACTAATGTA
131 GGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGC-TACCAGCACTAATGCA
* * * * *
33277628 CCGAATCCCACCAGAACTCCAAAGTTAAGCGTGCTTGGGCTAGAGTTGTACTCGGATGGGTGACC
195 CCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACC
* * * *
33277693 TCCTGGGAAGTCCTCGTGGTGCACCACTCCCATTTTATATTTCATGTAATTTTTTTAAACATCGT
260 TCCTGGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATTTCATGTAATTTTTTTTAACATCGT
* * * *
33277758 TTAACTAATTAGTTATTTTCATTTTACAAAATAAATCACTTG-AACTGTTATTTGGTCAAATTTG
325 TTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAAC-GTTATTTGGTCGAATTTG
** * * * *
33277822 AATTCCTATTCGAGGCGCAAATGCGATAAGGGGTAGCCTTTATATAAATAGAGTGCACGAGAGTT
389 AATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTT
* **
33277887 GACGGGTTAGATTATACCAGCACTAATGCACCGAATCCCATCAAATCTCTACAGTTAAGCGTGCT
454 GACGGGTTAGATTATACCAGCACTAATGCACCG-ATCCCATCAAAACTCCGCAGTTAAGCGTGCT
* * *
33277952 TGGGCTAGAGTAGTACTAGGATGGATGACCTCAC-GGGAAGTCTTCGTGTTGCACCCCTCCCATT
518 TGGGCTAGAGTAGTACTAGGATGGGTGATCTC-CTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
*
33278016 ATATATTTCATGTAATTTTTTGTGTGTTTTAAACATTGTTTAACTAATTAGTTATTTGCG-TTTA
1 TTATATTTCATGTAA-TTTTT-T-T-TTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTA
* *
33278080 CGAAATAAATCGCTTGAAACATTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGTGAT
62 CGAAATAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGAT
* * *
33278145 AAGGGGTAGCTTTTACATAAATAGATTGCGCAAGAGTTGATGGGAGCGATGCTACCAGCACTAAT
127 AAGGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGCTACCAGCACTAAT
* * *
33278210 GAACCGGATCCCATCAGAACTCCGAAGGTAAGCGTGCTT-GGCTGAGAGTAGTATTAGGATGGGT
192 GCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGT
* *
33278274 GACCTCCTGGGAATTCCTCGTGTTGCACCCCTCTTATTTTATATTTCATGTAA-TTTTTTTAACA
256 GACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATTTCATGTAATTTTTTTTAACA
* * * *
33278338 TTGTTTAACTAATTAGTTATTTGCGTTTTTCGAAATAAATCACTTGAAACGTTATTTGATCAAAT
321 TCGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCGAAT
* *
33278403 TTGAATTCAAATTCGAGGCACAAGTGTGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGA
386 TTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGA
* * * * *
33278468 GTTGACGGGTTAGATTATACTAACCCTAATGCACCAGATCCCATCAAAACCCCGTAGTTAAGCGT
451 GTTGACGGGTTAGATTATACCAGCACTAATGCACC-GATCCCATCAAAACTCCGCAGTTAAGCGT
* * * *
33278533 GCTTGGG-TGAGAGCAGTACTACGATGGGTGATCTCCTGGGAAGCCCTCGTGTTGCACCGCTCCC
515 GCTTGGGCT-AGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
33278597 ATT
579 ATT
* * * *
33278600 TTATATTTCATGTAATTGTTTTACTTTTAAACATTGTTTAACTAATTAGTTTTTTGTGTTTTATG
1 TTATATTTCATGTAATT-TTTT-TTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACG
* * * *
33278665 AAATAAATCGTTTGAAACGTTACTTGGTCAAATTTGAATTCAAATTTGAGGCGCAAGCGCGATAA
64 AAATAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAA
* *
33278730 GGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGATACTAGCACTAATGC
129 GGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGCTACCAGCACTAATGC
* * * * **
33278795 ATCGGATCCCATTAGAACTCTGCAGTTAAATGTGCTT-GGCTGAGAGTAGTACTAGGATGGGTGA
194 ACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGTGA
* * * *
33278859 CCTCCTGGGAAGTCCTCGCGTTGCACCCCTCCTATATTATATTTTATGTAA-TTTTCTTAACATC
258 CCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATTTCATGTAATTTTTTTTAACATC
* * * *
33278923 GTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCGCTTGAAATGTTATTCGGTTGAATTT
323 GTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCGAATTT
* * * ** * *
33278988 GATTTCAAATTTGAGGCACAAGTGCGATAAGAAGTAGCTTTTATATAAATAGATTGTGCAAGAGT
388 GAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGT
* * *
33279053 TGACGAGTTAGATTATACCAGCACTAATGCACCAGATCCCATCAAAACTCTGCAGTTAAACGTGC
453 TGACGGGTTAGATTATACCAGCACTAATGCACC-GATCCCATCAAAACTCCGCAGTTAAGCGTGC
* *
33279118 TTGGG-TGAGAGTAGTACTAGGAT-GGTGATCTCTTGGGAAGTCCTCCTGTTGCACCCCTCCCAT
517 TTGGGCT-AGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCAT
33279181 T
581 T
* * * *
33279182 TTATATTTCGTGTAATTTTTTTCTTTTTTGAACATTTTTTAACTAATTAGTTATTTGTGTTTTAC
1 TTATATTTCATGTAA--TTTTT-TTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTAC
* *
33279247 GAAAAAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCACAAGTGCGATA
63 GAAATAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATA
* * * *
33279312 AGGGGTAGCCTTTACATAAATAGATTGCGCAAAAGTTGACGTGTCCGATGATACCAGCACTAATG
128 AGGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGCTACCAGCACTAATG
* * * * * * *
33279377 CACCGGATCCCATTC-GAACACC-ACAGTTAAGTGTTCTTAGGCAAGAGTAGTACTGGGACGGGT
193 CACCGGATCCCA-TCAGAACTCCGA-AGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGT
* * * * *
33279440 GATCTCTTGGGAATTCCTCGTGTTGCACCTCTCCCT-TTTTATATTTCATGTACTTTATTTTTAA
256 GACCTCCTGGGAAGTCCTCGTGTTGCACCCCT-CCTATTTTATATTTCATGTAATTT-TTTTTAA
* * ** * *
33279504 GCGTTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCAGGTGAAACGTTATTCGGTTG
319 -CATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCG
* * * * * * **
33279569 AATTTGAATTCAAATTCAATGCGCAAGTGCGATAAGGGGTTGCCTTTATACAAATATAATGTACA
383 AATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCA
* ** * * * * *
33279634 AGAGCTGACAGGG-GCGATCATACAAGCACTAATGCACCCGATCCCATCAGAACTCCGTAGTTCA
448 AGAGTTGAC-GGGTTAGATTATACCAGCACTAATGCA-CCGATCCCATCAAAACTCCGCAGTTAA
*** * ** * * *
33279698 GCGTGCTCCAGCTAGAGTTGTACTAGGGCGGGTGA-CTTCTTGGGAAGTCCTCGTGTTGAAGCCC
511 GCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGATC-TCCTGGGAAGTCCTCGTGTTGCACCCC
*
33279762 TCCTATT
575 TCCCATT
* * * *
33279769 TTATATTTCATGTAA--TTTGTTTTTAAACATAGTTTAAGTAATTAGTTATTTGCATTTTACGAA
1 TTATATTTCATGTAATTTTTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAA
** * * ** *
33279832 ATAAATTACTTGAAATGTTATTTAGTCGAATTTGAATTCAAATTCAAGGCGCAAGTGCGATAAGA
66 ATAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGG
* * * * *
33279897 GGTAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGAGTGCGAT-CATACCAGTACTAATGTA
131 GGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGC-TACCAGCACTAATGCA
* * * * * * * *
33279961 CTGGATCCCGTGAGAACTCCGCAGTTAAGCGTTCTTGGGCTAGAGTTGTACTCGGATGGGTGACT
195 CCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACC
* * * * * *
33280026 TCCTGGGAAGTCCTTGGGTTGCACCCTTCCCATTTTATATTTCATGTAATTTTTTTAAACATTGT
260 TCCTGGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATTTCATGTAATTTTTTTTAACATCGT
* * * * * * **
33280091 TTAACTAATTCGTTATTTGTGTTTTATGAATTAAATCGCTTGAAA-GTTACTTCATCGAATTTGA
325 TTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGA
* * *
33280155 ATTCAAATTTGAGGTGCAAGTGCGATAAGGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTG
390 ATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTG
* * * ** *
33280220 ACGTTGACGTGT-GCAATGATACCAGCACTAATGCACCGGATCCCATTAGAACTCTACAATTAAG
455 ACG--G--GT-TAG--ATTATACCAGCACTAATGCACC-GATCCCATCAAAACTCCGCAGTTAAG
* * * * * * *
33280284 CGTGCTTAGGCAAGAGTAGTACTGGGACGGGTGATCTCTTGGGAATTTCTCGTGTTGCACCCCTC
512 CGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
*
33280349 CTATT
577 CCATT
* * * *
33280354 TTATATTTCATGT-A-CTTTATTTTTAAGCGTTGTTTAACTAATTAGTTATTTGCGTTTTACGAA
1 TTATATTTCATGTAATTTTTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAA
* * * ** *
33280417 ATAAATCAG-GTGAAACGTTATTCGGTTGAATTTGAATTCAAATTCAATGCGCAAGTGCGATAAG
66 ATAAATC-GCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAG
* * * * * ** * *
33280481 GGGTTGCCTTTATACAAATATAATGTACAAGAGCTGACAGGG-GCGAT-CATACAAGCACTAATG
130 GGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGAC-GGGTGCGATGC-TACCAGCACTAATG
* * * *** * **
33280544 CACCCGATCCCATCAGAACTCCGTAGTTCAGCGTGCTCCAGCTAGAGTTGTACTAGGGCGGGTGA
193 CACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGA
* * * *
33280609 CTTCTTGGGAAGTCCTCGTGTTGAAGCCCTCCTATTTTATATTTCATGTAATTTGTTTTTAAACA
258 CCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATTTCATGTAATTT-TTTTT-AACA
* * * * * *
33280674 TAGTTTAAGTAATTAGTTATTTGCATTTTACGAAATAAATTACTTGAAATGTTATTTAGTCGAAT
321 TCGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCGAAT
* * *
33280739 TTGAATTCAAATTCAAGGCGCAAGTGCGATAAGAGGTAGCCTTTATATAAATAGAATGCGCAAGA
386 TTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGA
* ** * * * * * * *
33280804 GTTGACGAGTGCGATCATACCAGTACTAATGTACTGGATCCCGTGAGAACTCCGCAGTTAAGCGT
451 GTTGACGGGTTAGATTATACCAGCACTAATGCAC-CGATCCCATCAAAACTCCGCAGTTAAGCGT
* * * * * *
33280869 TCTTGGGCTAGAGTTGTACTCGGATGGGTGA-CTTCCTGGGAAGTCCTTGGGTTGCACCCTTCCC
515 GCTTGGGCTAGAGTAGTACTAGGATGGGTGATC-TCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
33280933 ATT
579 ATT
* * *
33280936 TTATATTTCATGTAA----TTTTTTTAAACATTGTTTAACTAATTCGTTATTTGTGTTTTATGAA
1 TTATATTTCATGTAATTTTTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAA
* * ** *
33280997 TTAAATCGCTTGAAA-GTTACTTCATCGAATTTGAATTCAAATTTGAGGTGCAAGTGCGATAAGG
66 ATAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGG
* *
33281061 GGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGTTGACGTGTGCAATGATACCAGCACTA
131 GGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGAC---G--G-GTGCGATGCTACCAGCACTA
* * * * *
33281126 ATGCACCGGATCCCATTAGAACTCTAC-AA-TTAAGCGTGCTTAGGCAAGAGTAGTACTGGGACG
190 ATGCACCGGATCCCATCAGAACTC--CGAAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATG
* * * *
33281189 GGTGATCTCTTGGGAATTTCTCGTGTTGCACCCCTCCTATTTTATATTTCATGTAATTTATTTTT
253 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATTTCATGTAATTT-TTTTT
* *
33281254 AAGCATCGTTTAACTAATTTGTTATTTGCGTTTTACGAAATAAATGACTTGAAACGTTATTTGGT
317 AA-CATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGT
* * * *
33281319 TGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATATAATGTG
381 CGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCG
* * ** * * * * * * **
33281384 CAAGAGCTGACAGGTGCGGTCATACAAGCACGAATGCACCCGATCCCATTAGAACTCCATAGTTA
446 CAAGAGTTGACGGGTTAGATTATACCAGCACTAATGCA-CCGATCCCATCAAAACTCCGCAGTTA
* * * * * *
33281449 AGCATGCTTAGGCTAGAGTTGTACTAAGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACCCC
510 AGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCACCCC
*
33281514 TCCTATT
575 TCCCATT
* * * *
33281521 TTATATTTCATGTAA--TTTATTTTTAAACATAGTTTAAGTAATTAGTTATTTGCGTTTTATGAA
1 TTATATTTCATGTAATTTTTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAA
** * * * *
33281584 ATAAATTACTTGAAACTTTATTTAGTCGAATTTGAATTCAAATTCGAGGCACAAGTGCGATAAGG
66 ATAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGG
* * * * *
33281649 GGTAGCCTTTATATAAATAGAATGCGCAAGAGTTGGCGGGTGCGAT-CATACCAGTACTAATGTA
131 GGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGC-TACCAGCACTAATGCA
* * * *
33281713 CCGGATCCCATCACAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTTGTACTCGGATGGGTGACC
195 CCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACC
* * * * * *
33281778 TCTTGGGAAGTCCTCGGGTGGCACCCCTCCTATTCTATATTTCATGCAATTTTTTTAAACATCGT
260 TCCTGGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATTTCATGTAATTTTTTTTAACATCGT
* *
33281843 TTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTCAAACGTTATTTGGTCAAATTTGA
325 TTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGA
* * * **
33281908 ATTCAAATAT-GAGGCGCAAGTGTGATAAGGGGTAGCCTTGATATAAATAGAGTGCGCGGGAGTT
390 ATTCAAAT-TCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTT
* *
33281972 GACTGGTTAGATTATACCAGCACTAATGCACCGAATACCATCAAAACTCCGCAGTTAAGCGTGCT
454 GACGGGTTAGATTATACCAGCACTAATGCACCG-ATCCCATCAAAACTCCGCAGTTAAGCGTGCT
* ** * * * **
33282037 TGGGCTAGAGTAGTACTAGGATGGGTGACCTTTTGGTAAGTCCTCGAGTTGCACCACTCGTATT
518 TGGGCTAGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* ** * * *
33282101 TTATATTTCATATAA----TTTTTTTAAACATCATTTAACTAAGTAGTTATATGCGTTTTACTAA
1 TTATATTTCATGTAATTTTTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAA
* * * * **
33282162 AGAAATCACATGAATCGTTATTTTGGTCGAATTTGCTTTCAAATTTGAGGCGCAAGTGCGATAAG
66 ATAAATCGCTTGAAACGTTA-TTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAG
* * * * * * **
33282227 GGGAAGTCTTTATATAAATAGATTGCGCAAGAGTTGAAGGTTGCAAT-CATACCAGCACTAATAT
130 GGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGC-TACCAGCACTAATGC
* * * * * * *
33282291 ACCAGATCCCTTCAGAACTTC-ATAGTAAATCATG-TTGGGGTGAGAGTAGTACTAGGATGGGT-
194 ACCGGATCCCATCAGAACTCCGA-AGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGTG
* * *
33282353 AACTCCTTGGGAAGTCCTCGTGTTGCACCCCTTCC-ATTTTATATTTCATATACAGTTTTTTTAA
257 ACCTCC-TGGGAAGTCCTCGTGTTGCACCCC-TCCTATTTTATATTTCATGTA-A-TTTTTTTTA
** * * *
33282417 ACATTATTTAACTAATTAGTTATTTGCGTTTTATGAAATAAATCACTTGAAATGTTATTTGGTAG
318 ACATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCG
*
33282482 AATTTGAATTGAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCA
383 AATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCA
* * ** * * * * * * * *
33282547 AGGGTTGAGGGGTGCGATCATACCAACAATAATGCACTGGATCCCATCAGAACTCTGCAATTAAT
448 AGAGTTGACGGGTTAGATTATACCAGCACTAATGCAC-CGATCCCATCAAAACTCCGCAGTTAAG
* * * * * * * *
33282612 AGTGCTCGAGCGAGAGTAGTGCTAGGATGGGTGACCTCCT-GGAAGTCCTCATGTTGCACCCGTC
512 CGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
33282676 CCATT
577 CCATT
33282681 TT
1 TT
33282683 GTAACACCCT
Statistics
Matches: 5999, Mismatches: 892, Indels: 219
0.84 0.13 0.03
Matches are distributed among these distances:
578 64 0.01
579 323 0.05
580 604 0.10
581 230 0.04
582 800 0.13
583 1476 0.25
584 535 0.09
585 1190 0.20
586 223 0.04
587 157 0.03
588 396 0.07
589 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (581 bp):
TTATATTTCATGTAATTTTTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAA
ATAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGG
GGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGCTACCAGCACTAATGCAC
CGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCT
CCTGGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATTTCATGTAATTTTTTTTAACATCGTT
TAACTAATTAGTTATTTGCGTTTTACGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAA
TTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGA
CGGGTTAGATTATACCAGCACTAATGCACCGATCCCATCAAAACTCCGCAGTTAAGCGTGCTTGG
GCTAGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
Found at i:33277318 original size:291 final size:290
Alignment explanation
Indices: 33275103--33282682 Score: 8898
Period size: 291 Copynumber: 26.0 Consensus size: 290
33275093 AAATTACTTA
* * * *
33275103 TTAT-TTTCATGTAATTTATTTTTAAATATAGTTTAAGTAATTAGTTATTTGCATTTTACGAAAT
1 TTATATTTCATGTAATTT-TTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* *
33275167 AAATTACTTGAAACGTTATTTAGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
65 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * *
33275232 TAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATTCCAGTACTAATGTACCG
130 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCG
* * * * *
33275297 GATCTCATCAGAACTCCGCAGTTAAGCATGCTTGGGCTAGAGTTGTACTCGGATGGGTGACCTCC
195 GATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTCT
* * *
33275362 TGGGAAGTCCTCGGGTTGCACCCTTCCCCTT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33275393 TTATATTTCATGTAA-TTTTTTTAAACATTGTTTAACTAATTAGTTATTTGTGATTTATGAAATA
1 TTATATTTCATGTAATTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATA
* * * * *
33275457 AATCGCTTGAAATGTTACTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATATGGGGT
66 AATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGT
* * ** * *
33275522 AGCCTTTACATAAATGGATTGCGCAAGAGTTGACGGGTTAGATTATACCAGCACTAATGCACCGA
131 AGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGG
* * * *
33275587 ATCCCATCAAAACTCCGCAGTTAAGCATGCTTGGGCTAGAGTAGTACTAGGATGGGTGGCCTCCT
196 ATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTCTT
33275652 GGGAAGTCCTCGTGTTGCACCCCTCCCATT
261 GGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * *
33275682 ATATATTTCGTGTAATTTTTTTTGTTTTAAACATTTTTTAACTATTTAGTTATTTGCG-TTTACG
1 TTATATTTCATGTAA----TTTT-TTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACG
* * * * * **
33275746 AAATAAATCGCTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCACACGTATGATAA
61 AAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAA
* * * * *
33275811 GGGGTAGCTTTTACATAAATAGATTGCGCAAGAGTTGATGGGTGCGATGC-TACTAGAACTAATG
126 GGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGAT-CATACCAGCACTAATG
* * * * * * *
33275875 CACCAGATCCCATCAGAACTCCGAAGGTAAGCATGCTT-GGCTGAGAGTAGTATTTGTATGGGTG
190 CACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGTG
* * **
33275939 ACCTCCTAGGAAGTCCTCGTGTTGCACCCCTCTTATT
254 ACCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33275976 TTATATTTCATGTAATTTTTTTT-AACATCGTTTAACTAATTAGTTATTTGCGTTTTTCGCAATA
1 TTATATTTCATGTAATTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATA
* * *
33276040 AATCACTTGAAACGTTATTTGATCAAATTTGAATTCAAATTCGAGGCACAAGTGCGATAAGGGGT
66 AATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGT
** * * * *
33276105 AGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTTAGATTATACTAGCGCTAATGCACCAG
131 AGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGG
* * * * * *
33276170 ATCCCATCAAAACTCCGTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGATCACCT
196 ATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTCTT
*
33276235 GGGAAGTCCTCGTGTTGCACCTCTCCCATT
261 GGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * *
33276265 TTATATTTCATGTAATTTTTTTATTTTTAAACATAGTTTAATTAATTAGTTATTTGTGTTTTATG
1 TTATATTTCATGTAA----TTT-TTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACG
* * * *
33276330 AAATAAATCGCTTGAAACATTACTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAA
61 AAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAA
* * * * *
33276395 GGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACAGGTGCGATGATACTAGCTCTAATGC
126 GGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGC
* * ** **
33276460 ATCGGATCCCATTAGAACTTTGCAGTTAAATGTGCTTGGG-TGAGAGTAGTACTAGGATGGGTGA
191 ACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGTGA
* * *
33276524 CCTCCTAGGAAGTCCTCGTGTTGCACCCCTCTCATT
255 CCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33276560 TTATATTTTATGTAA-TTTTTTT-AACATCGTTTAACTAATTAGTTATTAGCGTTTTACGAAATA
1 TTATATTTCATGTAATTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATA
* * * * *
33276623 AATCACTTGAAACGTTATTTGGTTGAATGTGATTTCTAATTCGAGGCACAAGTGCGATAAGGGGT
66 AATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGT
* * ** * *
33276688 AGCTTTTATATAAATAGATTGCGCAAGAGTTGACGAGTTAGATTATACCAGCACTAATGCACCAG
131 AGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGG
* * * *
33276753 ATCCCATCAAAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGCAGTACTAGGATGGGTGATCTCTT
196 ATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTCTT
*
33276818 GGGAAGCCCTCGTGTTGCACCCCTCCCATT
261 GGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33276848 TTATATTTCATGTATTTTTTTTTGTTTGTTAAACATTGTTTAACTAATTAGTTATTTGTGTCTTA
1 TTATATTTCATGTA-----ATTT-TTT-TTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTA
* * * * * *
33276913 CGAAAAAAATCACTTGAAATGTTATTTGGTCGAAATTCAATTCAAATTTGAGGCGCAAGTGCGAA
59 CGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGAT
* * *
33276978 AAGGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGTGTGCGATGATACCAGCACTAAT
124 AAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAAT
* * * * * * *
33277043 GCACCGGATCCCATTAGAACTCCACAGTTAAGCATGCTTAGGCAAGAGTAGTACTGGGACGGGTG
189 GCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTG
* * *
33277108 ATCTCTTGGAAATTCCTCGTGTTGCACCCCTCCCATT
254 ACCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* *
33277145 TTATATTTCATGTAATTTATTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTATGAAAT
1 TTATATTTCATGTAATTT-TTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* * * * * *
33277210 AAAACACTTGAAACCTTATTTGGTTGAATTTGAATTCAAATTCGAGGCGAAAGTTCGATAAGGGA
65 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * *
33277275 TAGCCTTTATATAAATATAATGCGCAAGAGTTGACAGGTGCGATCATACAAGCACTAATGCACTC
130 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCAC-C
* * * * * * *
33277340 -GAACCCATCAGAACCCCGTAGTTAAGCGTGCCTGGGCTACAGTTGTACTAGGATGTGTGACCTC
194 GGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTC
* * * *
33277404 CTGGGAAGTTCTCATGTTGCACCCCTCCTATT
259 TTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * *
33277436 TTATATTTCATGTAATTTATTTGTAAACATAGTTTAAGTAATTACTTATTTGCGTTTTACGAAAT
1 TTATATTTCATGTAATTT-TTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* * * *
33277501 AAATTACTTGAAATGTTATTTAGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGATAAGGGG
65 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * * * * *
33277566 TAGCCTTTATATGAATAGAATGTGCGAGAGTTGATGGGTGCGATCATACCAGTACTAATGTACCG
130 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCG
* * ** * * *
33277631 AATCCCACCAGAACTCCAAAGTTAAGCGTGCTTGGGCTAGAGTTGTACTCGGATGGGTGACCTCC
195 GATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTCT
* *
33277696 TGGGAAGTCCTCGTGGTGCACCACTCCCATT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * *
33277727 TTATATTTCATGTAA-TTTTTTTAAACATCGTTTAACTAATTAGTTATTTTCATTTTACAAAATA
1 TTATATTTCATGTAATTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATA
* ** *
33277791 AATCACTTG-AACTGTTATTTGGTCAAATTTGAATTCCTATTCGAGGCGCAAATGCGATAAGGGG
66 AATCACTTGAAAC-GTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * ** *
33277855 TAGCCTTTATATAAATAGAGTGCACGAGAGTTGACGGGTTAGATTATACCAGCACTAATGCACCG
130 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCG
* ** *
33277920 AATCCCATCA-AATCTCTACAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGATGACCTC
195 GATCCCATCAGAA-CTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTC
** *
33277984 ACGGGAAGTCTTCGTGTTGCACCCCTCCCATT
259 TTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
*
33278016 ATATATTTCATGTAATTTTTTGTGTGTTTTAAACATTGTTTAACTAATTAGTTATTTGCG-TTTA
1 TTATATTTCATGTAA----TT-T-T-TTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTA
* * * *
33278080 CGAAATAAATCGCTTGAAACATTATTTGGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGTGAT
59 CGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGAT
* * * *
33278145 AAGGGGTAGCTTTTACATAAATAGATTGCGCAAGAGTTGATGGGAGCGATGC-TACCAGCACTAA
124 AAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGAT-CATACCAGCACTAA
* * * *
33278209 TGAACCGGATCCCATCAGAACTCCGAAGGTAAGCGTGCTT-GGCTGAGAGTAGTATTAGGATGGG
188 TGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGG
* * **
33278273 TGACCTCCTGGGAATTCCTCGTGTTGCACCCCTCTTATT
252 TGACCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
*
33278312 TTATATTTCATGTAA-TTTTTTT-AACATTGTTTAACTAATTAGTTATTTGCGTTTTTCGAAATA
1 TTATATTTCATGTAATTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATA
* * * *
33278375 AATCACTTGAAACGTTATTTGATCAAATTTGAATTCAAATTCGAGGCACAAGTGTGATAAGGGGT
66 AATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGT
** * * * * *
33278440 AGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTTAGATTATACTAACCCTAATGCACCAG
131 AGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGG
* * * * * * *
33278505 ATCCCATCAAAACCCCGTAGTTAAGCGTGCTTGGG-TGAGAGCAGTACTACGATGGGTGATCTCC
196 ATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGTGACCTCT
* *
33278569 TGGGAAGCCCTCGTGTTGCACCGCTCCCATT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33278600 TTATATTTCATGTAATTGTTTTACTTTTAAACATTGTTTAACTAATTAGTTTTTTGTGTTTTATG
1 TTATATTTCATGTAA---TTTT--TTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACG
** * * * *
33278665 AAATAAATCGTTTGAAACGTTACTTGGTCAAATTTGAATTCAAATTTGAGGCGCAAGCGCGATAA
61 AAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAA
* * *
33278730 GGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGATACTAGCACTAATGC
126 GGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGC
* * * **
33278795 ATCGGATCCCATTAGAACTCTGCAGTTAAATGTGCTT-GGCTGAGAGTAGTACTAGGATGGGTGA
191 ACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGTGA
* * * *
33278859 CCTCCTGGGAAGTCCTCGCGTTGCACCCCTCCTATA
255 CCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33278895 TTATATTTTATGTAA-TTTTCTT-AACATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAATA
1 TTATATTTCATGTAATTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATA
* * * * * * * **
33278958 AATCGCTTGAAATGTTATTCGGTTGAATTTGATTTCAAATTTGAGGCACAAGTGCGATAAGAAGT
66 AATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGT
* * * ** * *
33279023 AGCTTTTATATAAATAGATTGTGCAAGAGTTGACGAGTTAGATTATACCAGCACTAATGCACCAG
131 AGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGG
* * * *
33279088 ATCCCATCAAAACTCTGCAGTTAAACGTGCTTGGG-TGAGAGTAGTACTAGGAT-GGTGATCTCT
196 ATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGTGACCTCT
*
33279151 TGGGAAGTCCTCCTGTTGCACCCCTCCCATT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * *
33279182 TTATATTTCGTGTAATTTTTTTCTTTTTTGAACATTTTTTAACTAATTAGTTATTTGTGTTTTAC
1 TTATATTTCATGTAA-----TT-TTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTAC
* * * *
33279247 GAAAAAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCACAAGTGCGATA
60 GAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATA
* * * * *
33279312 AGGGGTAGCCTTTACATAAATAGATTGCGCAAAAGTTGACGTGTCCGATGATACCAGCACTAATG
125 AGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATG
* * * * * * * *
33279377 CACCGGATCCCATTC-GAACACCACAGTTAAGTGTTCTTAGGCAAGAGTAGTACTGGGACGGGTG
190 CACCGGATCCCA-TCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTG
* * * *
33279441 ATCTCTTGGGAATTCCTCGTGTTGCACCTCTCCCTTT
254 ACCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33279478 TTATATTTCATGTACTTTATTTTTAAGCGTTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
1 TTATATTTCATGTAATTT-TTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
** * * * *
33279543 AAATCAGGTGAAACGTTATTCGGTTGAATTTGAATTCAAATTCAATGCGCAAGTGCGATAAGGGG
65 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * * ** * *
33279608 TTGCCTTTATACAAATATAATGTACAAGAGCTGACAGGG-GCGATCATACAAGCACTAATGCACC
130 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGAC-GGGTGCGATCATACCAGCACTAATGCACC
* * * *** * ** *
33279672 CGATCCCATCAGAACTCCGTAGTTCAGCGTGCTCCAGCTAGAGTTGTACTAGGGCGGGTGACTTC
194 GGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTC
* * *
33279737 TTGGGAAGTCCTCGTGTTGAAGCCCTCCTATT
259 TTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33279769 TTATATTTCATGTAATTTGTTTTTAAACATAGTTTAAGTAATTAGTTATTTGCATTTTACGAAAT
1 TTATATTTCATGTAATTT-TTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* * * * *
33279834 AAATTACTTGAAATGTTATTTAGTCGAATTTGAATTCAAATTCAAGGCGCAAGTGCGATAAGAGG
65 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * * *
33279899 TAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGAGTGCGATCATACCAGTACTAATGTACTG
130 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCG
* * * * * * *
33279964 GATCCCGTGAGAACTCCGCAGTTAAGCGTTCTTGGGCTAGAGTTGTACTCGGATGGGTGACTTCC
195 GATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTCT
* * *
33280029 TGGGAAGTCCTTGGGTTGCACCCTTCCCATT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * *
33280060 TTATATTTCATGTAA-TTTTTTTAAACATTGTTTAACTAATTCGTTATTTGTGTTTTATGAATTA
1 TTATATTTCATGTAATTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATA
* * ** * *
33280124 AATCGCTTGAAA-GTTACTTCATCGAATTTGAATTCAAATTTGAGGTGCAAGTGCGATAAGGGGT
66 AATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGT
* * *
33280188 AGCCTTTACATAAATAGATTGCGCAAGAGTTGACGTTGACGTGTGCAATGATACCAGCACTAATG
131 AGCCTTTATATAAATAGATTGCGCAAGAGTTGAC---G--G-GTGCGATCATACCAGCACTAATG
* ** * * * * *
33280253 CACCGGATCCCATTAGAACTCTACAATTAAGCGTGCTTAGGCAAGAGTAGTACTGGGACGGGTGA
190 CACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGA
* * * *
33280318 TCTCTTGGGAATTTCTCGTGTTGCACCCCTCCTATT
255 CCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33280354 TTATATTTCATGTACTTTATTTTTAAGCGTTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
1 TTATATTTCATGTAATTT-TTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
** * * * *
33280419 AAATCAGGTGAAACGTTATTCGGTTGAATTTGAATTCAAATTCAATGCGCAAGTGCGATAAGGGG
65 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * * ** * *
33280484 TTGCCTTTATACAAATATAATGTACAAGAGCTGACAGGG-GCGATCATACAAGCACTAATGCACC
130 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGAC-GGGTGCGATCATACCAGCACTAATGCACC
* * * *** * ** *
33280548 CGATCCCATCAGAACTCCGTAGTTCAGCGTGCTCCAGCTAGAGTTGTACTAGGGCGGGTGACTTC
194 GGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTC
* * *
33280613 TTGGGAAGTCCTCGTGTTGAAGCCCTCCTATT
259 TTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33280645 TTATATTTCATGTAATTTGTTTTTAAACATAGTTTAAGTAATTAGTTATTTGCATTTTACGAAAT
1 TTATATTTCATGTAATTT-TTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* * * * *
33280710 AAATTACTTGAAATGTTATTTAGTCGAATTTGAATTCAAATTCAAGGCGCAAGTGCGATAAGAGG
65 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * * *
33280775 TAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGAGTGCGATCATACCAGTACTAATGTACTG
130 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCG
* * * * * * *
33280840 GATCCCGTGAGAACTCCGCAGTTAAGCGTTCTTGGGCTAGAGTTGTACTCGGATGGGTGACTTCC
195 GATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTCT
* * *
33280905 TGGGAAGTCCTTGGGTTGCACCCTTCCCATT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * *
33280936 TTATATTTCATGTAA-TTTTTTTAAACATTGTTTAACTAATTCGTTATTTGTGTTTTATGAATTA
1 TTATATTTCATGTAATTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATA
* * ** * *
33281000 AATCGCTTGAAA-GTTACTTCATCGAATTTGAATTCAAATTTGAGGTGCAAGTGCGATAAGGGGT
66 AATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGT
* * *
33281064 AGCCTTTACATAAATAGATTGCGCAAGAGTTGACGTTGACGTGTGCAATGATACCAGCACTAATG
131 AGCCTTTATATAAATAGATTGCGCAAGAGTTGAC---G--G-GTGCGATCATACCAGCACTAATG
* ** * * * * *
33281129 CACCGGATCCCATTAGAACTCTACAATTAAGCGTGCTTAGGCAAGAGTAGTACTGGGACGGGTGA
190 CACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGA
* * * *
33281194 TCTCTTGGGAATTTCTCGTGTTGCACCCCTCCTATT
255 CCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33281230 TTATATTTCATGTAATTTATTTTTAAGCATCGTTTAACTAATTTGTTATTTGCGTTTTACGAAAT
1 TTATATTTCATGTAATTT-TTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* *
33281295 AAATGACTTGAAACGTTATTTGGTTGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
65 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * * * * * * *
33281360 TAGCCTTTATATAAATATAATGTGCAAGAGCTGACAGGTGCGGTCATACAAGCACGAATGCACCC
130 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCG
* ** * * * *
33281425 GATCCCATTAGAACTCCATAGTTAAGCATGCTTAGGCTAGAGTTGTACTAAGATGGGTGACCTCT
195 GATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTCT
*
33281490 TGGGAAGTCCTCGTGTTGCACCCCTCCTATT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33281521 TTATATTTCATGTAATTTATTTTTAAACATAGTTTAAGTAATTAGTTATTTGCGTTTTATGAAAT
1 TTATATTTCATGTAATTT-TTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* * * *
33281586 AAATTACTTGAAACTTTATTTAGTCGAATTTGAATTCAAATTCGAGGCACAAGTGCGATAAGGGG
65 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * *
33281651 TAGCCTTTATATAAATAGAATGCGCAAGAGTTGGCGGGTGCGATCATACCAGTACTAATGTACCG
130 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCG
* * *
33281716 GATCCCATCACAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTTGTACTCGGATGGGTGACCTCT
195 GATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTCT
* * *
33281781 TGGGAAGTCCTCGGGTGGCACCCCTCCTATT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * *
33281812 CTATATTTCATGCAA-TTTTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAATA
1 TTATATTTCATGTAATTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATA
* * *
33281876 AATCACTTCAAACGTTATTTGGTCAAATTTGAATTCAAATAT-GAGGCGCAAGTGTGATAAGGGG
66 AATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAAT-TCGAGGCGCAAGTGCGATAAGGGG
* * ** * ** *
33281940 TAGCCTTGATATAAATAGAGTGCGCGGGAGTTGACTGGTTAGATTATACCAGCACTAATGCACCG
130 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCG
* * * *
33282005 AATACCATCAAAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTTT
195 GATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTCT
* * * **
33282070 TGGTAAGTCCTCGAGTTGCACCACTCGTATT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* ** * * * *
33282101 TTATATTTCATATAA-TTTTTTTAAACATCATTTAACTAAGTAGTTATATGCGTTTTACTAAAGA
1 TTATATTTCATGTAATTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATA
* * ** *
33282165 AATCACATGAATCGTTATTTTGGTCGAATTTGCTTTCAAATTTGAGGCGCAAGTGCGATAAGGGG
66 AATCACTTGAAACGTTA-TTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * * * ** *
33282230 AAGTCTTTATATAAATAGATTGCGCAAGAGTTGAAGGTTGCAATCATACCAGCACTAATATACCA
130 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCG
* * ** * * * * *
33282295 GATCCCTTCAGAACTTCATAGTAAATCATG-TTGGGGTGAGAGTAGTACTAGGATGGGT-AACTC
195 GATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGTGACCT-
*
33282358 CTTGGGAAGTCCTCGTGTTGCACCCCTTCCATT
258 CTTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
* * * *
33282391 TTATATTTCATATACAGTTTTTTTAAACATTATTTAACTAATTAGTTATTTGCGTTTTATGAAAT
1 TTATATTTCATGTA-ATTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* * *
33282456 AAATCACTTGAAATGTTATTTGGTAGAATTTGAATTGAAATTCGAGGCGCAAGTGCGATAAGGGG
65 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * * *
33282521 TAGCCTTTATATAAATAGATTGCGCAAGGGTTGAGGGGTGCGATCATACCAACAATAATGCACTG
130 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCG
* * ** * * * * *
33282586 GATCCCATCAGAACTCTGCAATTAATAGTGCTCGAGCGAGAGTAGTGCTAGGATGGGTGACCTCC
195 GATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTCT
* *
33282651 T-GGAAGTCCTCATGTTGCACCCGTCCCATT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATT
33282681 TT
1 TT
33282683 GTAACACCCT
Statistics
Matches: 6200, Mismatches: 990, Indels: 200
0.84 0.13 0.03
Matches are distributed among these distances:
287 77 0.01
288 836 0.13
289 1146 0.18
290 231 0.04
291 1852 0.30
292 77 0.01
293 9 0.00
294 465 0.08
295 721 0.12
296 360 0.06
297 426 0.07
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (290 bp):
TTATATTTCATGTAATTTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATA
AATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGT
AGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGG
ATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTCTT
GGGAAGTCCTCGTGTTGCACCCCTCCCATT
Found at i:33280398 original size:876 final size:871
Alignment explanation
Indices: 33275103--33282682 Score: 8900
Period size: 876 Copynumber: 8.7 Consensus size: 871
33275093 AAATTACTTA
* * * *
33275103 TTAT-TTTCATGTAATTTATTTTTAAATATAGTTTAAGTAATTAGTTATTTGCATTTTACGAAAT
1 TTATATTTCATGTAATTTATTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* *
33275167 AAATTACTTGAAACGTTATTTAGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
66 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * *
33275232 TAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATTCCAGTACTAATGTACCG
131 TAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGGG-GCGATCATACCAGCACTAATGCACCC
* * * * * * *
33275297 GATCTCATCAGAACTCCGCAGTTAAGCATGCTTGGGCTAGAGTTGTACTCGGATGGGTGACCTCC
195 GATCCCATCAGAACTCCGTAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACTTCT
* * * *
33275362 TGGGAAGTCCTCGGGTTGCACCCTTCCCCTTTTATATTTCATGTAA-TTTTTTTAAACATTGTTT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTTTTAAACATAGTTT
* * * *
33275426 AACTAATTAGTTATTTGTGATTTATGAAATAAATCGCTTGAAATGTTACTTGGTCGAATTTGAAT
325 AACTAATTAGTTATTTGCGTTTTATGAAATAAATCACTTGAAATGTTATTTGGTCGAATTTGAAT
* * * *
33275491 TCAAATTTGAGGCGCAAGTGCGATATGGGGTAGCCTTTACATAAATGGATTGCGCAAGAGTTGAC
390 TCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGAC
* ** * * * * *
33275556 GGGTTAGATTATACCAGCACTAATGCACCGAATCCCATCAAAACTCCGCAGTTAAGCATGCTTGG
455 GAGTGCGATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGG
* *
33275621 GCTAGAGTAGTACTAGGATGGGTGGCCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTATAT
520 GCTAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTAT
* * *
33275686 ATTTCGTGTAATTTTTTTTGTTTTAAACATTTTTTAACTATTTAGTTATTTGCG-TTTACGAAAT
585 ATTTCATGTAA-----TTT-TTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* * * * **
33275750 AAATCGCTTGAAATGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCACACGTATGATAAGGGG
644 AAATCACTTGAAACGTTATTTGATCGAATTTGAATTCAAATTTGAGGCACAAGTGCGATAAGGGG
* * * * *
33275815 TAGCTTTTACATAAATAGATTGCGCAAGAGTTGA-TGG-GTGCGATGCTACTAGAACTAATGCAC
709 TAGCCTTTACATAAATAGATTGCGCAAGAGTTGACTGGTGTGCAATGATACCAGCACTAATGCAC
* ** * * * * * *
33275878 CAGATCCCATCAGAACTCCGA-AGGTAAGCATGCTT-GGCTGAGAGTAGTATTTGTATGGGTGAC
774 CGGATCCCATCAGAACTCC-ACAATTAAGCGTGCTTGGGC-AAGAGTAGTACTAGGATGGGTGAT
* * *
33275941 CTCCTAGGAAGTCCTCGTGTTGCACCCCTCTTATT
837 CTCTTGGGAAGTCCTCGTGTTGCACCCCTCCTATT
* *
33275976 TTATATTTCATGTAATTT-TTTTT-AACATCGTTTAACTAATTAGTTATTTGCGTTTTTCGCAAT
1 TTATATTTCATGTAATTTATTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* * *
33276039 AAATCACTTGAAACGTTATTTGATCAAATTTGAATTCAAATTCGAGGCACAAGTGCGATAAGGGG
66 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* ** * * * *
33276104 TAGCCTTTATATAAATAGATTGCGCAAGAGTTGACGGGTTAGATTATACTAGCGCTAATGCACCA
131 TAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGGG-GCGATCATACCAGCACTAATGCACCC
* * *
33276169 GATCCCATCAAAACTCCGTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGA-TCAC
195 GATCCCATCAGAACTCCGTAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACT-TC
* *
33276233 CTGGGAAGTCCTCGTGTTGCACCTCTCCCATTTTATATTTCATGTAATTTTTTTATTTTTAAACA
259 TTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAA----TTT-TTTTTAAACA
* * * ** *
33276298 TAGTTTAATTAATTAGTTATTTGTGTTTTATGAAATAAATCGCTTGAAACATTACTTGGTCGAAT
319 TAGTTTAACTAATTAGTTATTTGCGTTTTATGAAATAAATCACTTGAAATGTTATTTGGTCGAAT
* *
33276363 TTGAATTCAAATTTGAGGCGCAAGTGCGATAAGGGGTAGCCTTTACATAAATAGATTGCGCAAGA
384 TTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGA
* * * * ** **
33276428 GTTGAC-AGGTGCGATGATACTAGCTCTAATGCA-TCGGATCCCATTAGAACTTTGCAGTTAAAT
449 GTTGACGA-GTGCGATCATACCAGCACTAATGCACT-GGATCCCATCAGAACTCCGCAGTTAAGC
*
33276491 GTGCTTGGG-TGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCACCCCTC
512 GTGCTTGGGCT-AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
* * * *
33276555 TCATTTTATATTTTATGTAATTTTTTT-AACATCGTTTAACTAATTAGTTATTAGCGTTTTACGA
576 CCATTTTATATTTCATGTAATTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGA
* * * * * *
33276619 AATAAATCACTTGAAACGTTATTTGGTTGAATGTGATTTCTAATTCGAGGCACAAGTGCGATAAG
641 AATAAATCACTTGAAACGTTATTTGATCGAATTTGAATTCAAATTTGAGGCACAAGTGCGATAAG
* * *
33276684 GGGTAGCTTTTATATAAATAGATTGCGCAAGAGTTGAC-GAGT-T--AGATTATACCAGCACTAA
706 GGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACTG-GTGTGCA-ATGATACCAGCACTAA
* * * * * *
33276745 TGCACCAGATCCCATCAAAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGCAGTACTAGGATGGGT
769 TGCACCGGATCCCATCAGAACTCCACAATTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGT
* *
33276810 GATCTCTTGGGAAGCCCTCGTGTTGCACCCCTCCCATT
834 GATCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCTATT
* * * * *
33276848 TTATATTTCATGTATTTTTTTTTGTTTGTTAAACATTGTTTAACTAATTAGTTATTTGTGTCTTA
1 TTATATTTCATGTA-----ATTTATTT-TTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTA
* * * * * *
33276913 CGAAAAAAATCACTTGAAATGTTATTTGGTCGAAATTCAATTCAAATTTGAGGCGCAAGTGCGAA
60 CGAAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGAT
* * * *
33276978 AAGGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGTGTGCGATGATACCAGCACTAAT
125 AAGGGGTAGCCTTTATATAAATAGAATGCGCAAGAGTTGACG-GGGCGATCATACCAGCACTAAT
* * ** * * * * *
33277043 GCACCGGATCCCATTAGAACTCCACAGTTAAGCATGCTTAGGCAAGAGTAGTACTGGGACGGGTG
189 GCACCCGATCCCATCAGAACTCCGTAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTG
* *
33277108 A-TCTCTTGGAAATTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTATTTTTAAA
254 ACT-TCTTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTT-TTTTTAAA
* * ** *
33277172 CATCGTTTAACTAATTAGTTATTTGCGTTTTATGAAATAAAACACTTGAAACCTTATTTGGTTGA
317 CATAGTTTAACTAATTAGTTATTTGCGTTTTATGAAATAAATCACTTGAAATGTTATTTGGTCGA
* * * * *
33277237 ATTTGAATTCAAATTCGAGGCGAAAGTTCGATAAGGGATAGCCTTTATATAAATATAATGCGCAA
382 ATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAA
* * * * *
33277302 GAGTTGAC-AGGTGCGATCATACAAGCACTAATGCACTCGAACCCATCAGAACCCCGTAGTTAAG
447 GAGTTGACGA-GTGCGATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAG
* * * * * *
33277366 CGTGCCTGGGCTACAGTTGTACTAGGATGTGTGACCTCCTGGGAAGTTCTCATGTTGCACCCCTC
511 CGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
* * * *
33277431 CTATTTTATATTTCATGTAATTTATTTGTAAACATAGTTTAAGTAATTACTTATTTGCGTTTTAC
576 CCATTTTATATTTCATGTAATTT-TTT-TAAACATTGTTTAACTAATTAGTTATTTGCGTTTTAC
* * *
33277496 GAAATAAATTACTTGAAATGTTATTT-AGTCGAATTTGAATTCAAATTTGAGGCGCAAGTGCGAT
639 GAAATAAATCACTTGAAACGTTATTTGA-TCGAATTTGAATTCAAATTTGAGGCACAAGTGCGAT
* * * * * * * *
33277560 AAGGGGTAGCCTTTATATGAATAGAATGTGCGAGAGTTGA-TGG-GTGCGATCATACCAGTACTA
703 AAGGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACTGGTGTGCAATGATACCAGCACTA
* * * * * *
33277623 ATGTACCGAATCCCACCAGAACTCCA-AAGTTAAGCGTGCTTGGGCTAGAGTTGTACTCGGATGG
768 ATGCACCGGATCCCATCAGAACTCCACAA-TTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGG
* * * * *
33277687 GTGACCTCCTGGGAAGTCCTCGTGGTGCACCACTCCCATT
832 GTGATCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCTATT
* * *
33277727 TTATATTTCATGTAA-TT-TTTTTAAACATCGTTTAACTAATTAGTTATTTTCATTTTACAAAAT
1 TTATATTTCATGTAATTTATTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* ** *
33277790 AAATCACTTG-AACTGTTATTTGGTCAAATTTGAATTCCTATTCGAGGCGCAAATGCGATAAGGG
66 AAATCACTTGAAAC-GTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGG
* * * ** *
33277854 GTAGCCTTTATATAAATAGAGTGCACGAGAGTTGACGGGTTAGATTATACCAGCACTAATGCA-C
130 GTAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGGG-GCGATCATACCAGCACTAATGCACC
*** * *
33277918 CGAATCCCATCA-AATCTCTACAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGATGACC
194 CG-ATCCCATCAGAA-CTCCGTAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACT
** * *
33277982 TCACGGGAAGTCTTCGTGTTGCACCCCTCCCATTATATATTTCATGTAATTTTTTGTGTGTTTTA
257 TCTTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAA----TT-T-T-TTTTA
* * * **
33278047 AACATTGTTTAACTAATTAGTTATTTGCG-TTTACGAAATAAATCGCTTGAAACATTATTTGGTC
315 AACATAGTTTAACTAATTAGTTATTTGCGTTTTATGAAATAAATCACTTGAAATGTTATTTGGTC
* * * *
33278111 GAATTTGAATTCAAATTTGAGGCGCAAGTGTGATAAGGGGTAGCTTTTACATAAATAGATTGCGC
380 GAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGC
* * * * * * *
33278176 AAGAGTTGATGGGAGCGATGC-TACCAGCACTAATGAACCGGATCCCATCAGAACTCCGAAGGTA
445 AAGAGTTGACGAGTGCGAT-CATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTA
* *
33278240 AGCGTGCTT-GGCTGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAATTCCTCGTGTTGCACCC
509 AGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCC
** *
33278304 CTCTTATTTTATATTTCATGTAATTTTTTT-AACATTGTTTAACTAATTAGTTATTTGCGTTTTT
573 CTCCCATTTTATATTTCATGTAATTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTA
* * *
33278368 CGAAATAAATCACTTGAAACGTTATTTGATCAAATTTGAATTCAAATTCGAGGCACAAGTGTGAT
638 CGAAATAAATCACTTGAAACGTTATTTGATCGAATTTGAATTCAAATTTGAGGCACAAGTGCGAT
* * * * * *
33278433 AAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGAC-GG-GT-TAGATTATACTAACCCT
703 AAGGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACTGGTGTGCA-ATGATACCAGCACT
* * * ** * ** * *
33278495 AATGCACCAGATCCCATCAAAACCCCGTAGTTAAGCGTGCTTGGGTGAGAGCAGTACTACGATGG
767 AATGCACCGGATCCCATCAGAACTCCACAATTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGG
* * * *
33278560 GTGATCTCCTGGGAAGCCCTCGTGTTGCACCGCTCCCATT
832 GTGATCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCTATT
* * * * *
33278600 TTATATTTCATGTAATTGTTTTACTTTTAAACATTGTTTAACTAATTAGTTTTTTGTGTTTTATG
1 TTATATTTCATGTAA----TTTATTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTACG
** * * * *
33278665 AAATAAATCGTTTGAAACGTTACTTGGTCAAATTTGAATTCAAATTTGAGGCGCAAGCGCGATAA
62 AAATAAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAA
* * * *
33278730 GGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACGGGTGCGATGATACTAGCACTAATGC
127 GGGGTAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGGG-GCGATCATACCAGCACTAATGC
* * * * * **
33278795 ATCGGATCCCATTAGAACTCTGCAGTTAAATGTGCTT-GGCTGAGAGTAGTACTAGGATGGGTGA
191 ACCCGATCCCATCAGAACTCCGTAGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGTGA
* * * * * * *
33278859 CCTCCTGGGAAGTCCTCGCGTTGCACCCCTCCTATATTATATTTTATGTAA-TTTTCTT-AACAT
255 CTTCTTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTTTTAAACAT
* * * * *
33278922 CGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCGCTTGAAATGTTATTCGGTTGAATT
320 AGTTTAACTAATTAGTTATTTGCGTTTTATGAAATAAATCACTTGAAATGTTATTTGGTCGAATT
* * * ** * *
33278987 TGATTTCAAATTTGAGGCACAAGTGCGATAAGAAGTAGCTTTTATATAAATAGATTGTGCAAGAG
385 TGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAG
** * ** * * *
33279052 TTGACGAGTTAGATTATACCAGCACTAATGCACCAGATCCCATCAAAACTCTGCAGTTAAACGTG
450 TTGACGAGTGCGATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAGCGTG
* * *
33279117 CTTGGG-TGAGAGTAGTACTAGGAT-GGTGATCTCTTGGGAAGTCCTCCTGTTGCACCCCTCCCA
515 CTTGGGCT-AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCA
* * * *
33279180 TTTTATATTTCGTGTAATTTTTTTCTTTTTTGAACATTTTTTAACTAATTAGTTATTTGTGTTTT
579 TTTTATATTTCATGTAA------T-TTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTT
* * *
33279245 ACGAAAAAAATCGCTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTTGAGGCACAAGTGCGA
637 ACGAAATAAATCACTTGAAACGTTATTTGATCGAATTTGAATTCAAATTTGAGGCACAAGTGCGA
* * *
33279310 TAAGGGGTAGCCTTTACATAAATAGATTGCGCAAAAGTTGAC--GTGTCCGATGATACCAGCACT
702 TAAGGGGTAGCCTTTACATAAATAGATTGCGCAAGAGTTGACTGGTGTGCAATGATACCAGCACT
* * * * * * *
33279373 AATGCACCGGATCCCATTC-GAACACCACAGTTAAGTGTTCTTAGGCAAGAGTAGTACTGGGACG
767 AATGCACCGGATCCCA-TCAGAACTCCACAATTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATG
* *
33279437 GGTGATCTCTTGGGAATTCCTCGTGTTGCACCTCTCCCT-TT
831 GGTGATCTCTTGGGAAGTCCTCGTGTTGCACCCCT-CCTATT
* * * *
33279478 TTATATTTCATGTACTTTATTTTTAAGCGTTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
1 TTATATTTCATGTAATTTATTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
** * * * *
33279543 AAATCAGGTGAAACGTTATTCGGTTGAATTTGAATTCAAATTCAATGCGCAAGTGCGATAAGGGG
66 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * ** * *
33279608 TTGCCTTTATACAAATATAATGTACAAGAGCTGACAGGGGCGATCATACAAGCACTAATGCACCC
131 TAGCCTTTATATAAATAGAATGCGCAAGAGTTGAC-GGGGCGATCATACCAGCACTAATGCACCC
* *** * **
33279673 GATCCCATCAGAACTCCGTAGTTCAGCGTGCTCCAGCTAGAGTTGTACTAGGGCGGGTGACTTCT
195 GATCCCATCAGAACTCCGTAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACTTCT
* * *
33279738 TGGGAAGTCCTCGTGTTGAAGCCCTCCTATTTTATATTTCATGTAATTTGTTTTTAAACATAGTT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTT-TTTTTAAACATAGTT
* * * * *
33279803 TAAGTAATTAGTTATTTGCATTTTACGAAATAAATTACTTGAAATGTTATTTAGTCGAATTTGAA
324 TAACTAATTAGTTATTTGCGTTTTATGAAATAAATCACTTGAAATGTTATTTGGTCGAATTTGAA
* * *
33279868 TTCAAATTCAAGGCGCAAGTGCGATAAGAGGTAGCCTTTATATAAATAGAATGCGCAAGAGTTGA
389 TTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGA
* * * * *
33279933 CGAGTGCGATCATACCAGTACTAATGTACTGGATCCCGTGAGAACTCCGCAGTTAAGCGTTCTTG
454 CGAGTGCGATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTG
* * * * * *
33279998 GGCTAGAGTTGTACTCGGATGGGTGACTTCCTGGGAAGTCCTTGGGTTGCACCCTTCCCATTTTA
519 GGCTAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTA
* * * *
33280063 TATTTCATGTAATTTTTTTAAACATTGTTTAACTAATTCGTTATTTGTGTTTTATGAATTAAATC
584 TATTTCATGTAATTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATC
* * * **
33280128 GCTTGAAA-GTTACTTCATCGAATTTGAATTCAAATTTGAGGTGCAAGTGCGATAAGGGGTAGCC
649 ACTTGAAACGTTATTTGATCGAATTTGAATTCAAATTTGAGGCACAAGTGCGATAAGGGGTAGCC
33280192 TTTACATAAATAGATTGCGCAAGAGTTGACGTTGACGTGTGCAATGATACCAGCACTAATGCACC
714 TTTACATAAATAGATTGCGCAAGAGTTGAC--TG--GTGTGCAATGATACCAGCACTAATGCACC
* * * * *
33280257 GGATCCCATTAGAACTCTACAATTAAGCGTGCTTAGGCAAGAGTAGTACTGGGACGGGTGATCTC
775 GGATCCCATCAGAACTCCACAATTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGATCTC
* *
33280322 TTGGGAATTTCTCGTGTTGCACCCCTCCTATT
840 TTGGGAAGTCCTCGTGTTGCACCCCTCCTATT
* * * *
33280354 TTATATTTCATGTACTTTATTTTTAAGCGTTGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
1 TTATATTTCATGTAATTTATTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
** * * * *
33280419 AAATCAGGTGAAACGTTATTCGGTTGAATTTGAATTCAAATTCAATGCGCAAGTGCGATAAGGGG
66 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * ** * *
33280484 TTGCCTTTATACAAATATAATGTACAAGAGCTGACAGGGGCGATCATACAAGCACTAATGCACCC
131 TAGCCTTTATATAAATAGAATGCGCAAGAGTTGAC-GGGGCGATCATACCAGCACTAATGCACCC
* *** * **
33280549 GATCCCATCAGAACTCCGTAGTTCAGCGTGCTCCAGCTAGAGTTGTACTAGGGCGGGTGACTTCT
195 GATCCCATCAGAACTCCGTAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACTTCT
* * *
33280614 TGGGAAGTCCTCGTGTTGAAGCCCTCCTATTTTATATTTCATGTAATTTGTTTTTAAACATAGTT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTT-TTTTTAAACATAGTT
* * * * *
33280679 TAAGTAATTAGTTATTTGCATTTTACGAAATAAATTACTTGAAATGTTATTTAGTCGAATTTGAA
324 TAACTAATTAGTTATTTGCGTTTTATGAAATAAATCACTTGAAATGTTATTTGGTCGAATTTGAA
* * *
33280744 TTCAAATTCAAGGCGCAAGTGCGATAAGAGGTAGCCTTTATATAAATAGAATGCGCAAGAGTTGA
389 TTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGA
* * * * *
33280809 CGAGTGCGATCATACCAGTACTAATGTACTGGATCCCGTGAGAACTCCGCAGTTAAGCGTTCTTG
454 CGAGTGCGATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTG
* * * * * *
33280874 GGCTAGAGTTGTACTCGGATGGGTGACTTCCTGGGAAGTCCTTGGGTTGCACCCTTCCCATTTTA
519 GGCTAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTA
* * * *
33280939 TATTTCATGTAATTTTTTTAAACATTGTTTAACTAATTCGTTATTTGTGTTTTATGAATTAAATC
584 TATTTCATGTAATTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATC
* * * **
33281004 GCTTGAAA-GTTACTTCATCGAATTTGAATTCAAATTTGAGGTGCAAGTGCGATAAGGGGTAGCC
649 ACTTGAAACGTTATTTGATCGAATTTGAATTCAAATTTGAGGCACAAGTGCGATAAGGGGTAGCC
33281068 TTTACATAAATAGATTGCGCAAGAGTTGACGTTGACGTGTGCAATGATACCAGCACTAATGCACC
714 TTTACATAAATAGATTGCGCAAGAGTTGAC--TG--GTGTGCAATGATACCAGCACTAATGCACC
* * * * *
33281133 GGATCCCATTAGAACTCTACAATTAAGCGTGCTTAGGCAAGAGTAGTACTGGGACGGGTGATCTC
775 GGATCCCATCAGAACTCCACAATTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGATCTC
* *
33281198 TTGGGAATTTCTCGTGTTGCACCCCTCCTATT
840 TTGGGAAGTCCTCGTGTTGCACCCCTCCTATT
* *
33281230 TTATATTTCATGTAATTTATTTTTAAGCATCGTTTAACTAATTTGTTATTTGCGTTTTACGAAAT
1 TTATATTTCATGTAATTTATTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* *
33281295 AAATGACTTGAAACGTTATTTGGTTGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
66 AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
* * * * * * *
33281360 TAGCCTTTATATAAATATAATGTGCAAGAGCTGACAGGTGCGGTCATACAAGCACGAATGCACCC
131 TAGCCTTTATATAAATAGAATGCGCAAGAGTTGAC-GGGGCGATCATACCAGCACTAATGCACCC
* * * * * * *
33281425 GATCCCATTAGAACTCCATAGTTAAGCATGCTTAGGCTAGAGTTGTACTAAGATGGGTGACCTCT
195 GATCCCATCAGAACTCCGTAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACTTCT
*
33281490 TGGGAAGTCCTCGTGTTGCACCCCTCCTATTTTATATTTCATGTAATTTATTTTTAAACATAGTT
260 TGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTT-TTTTTAAACATAGTT
* * *
33281555 TAAGTAATTAGTTATTTGCGTTTTATGAAATAAATTACTTGAAACT-TTATTTAGTCGAATTTGA
324 TAACTAATTAGTTATTTGCGTTTTATGAAATAAATCACTTGAAA-TGTTATTTGGTCGAATTTGA
* *
33281619 ATTCAAATTCGAGGCACAAGTGCGATAAGGGGTAGCCTTTATATAAATAGAATGCGCAAGAGTTG
388 ATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTG
* * * * * *
33281684 GCGGGTGCGATCATACCAGTACTAATGTACCGGATCCCATCACAACTCCGCAGTTAAGCGTGCTT
453 ACGAGTGCGATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTT
* * * * * * *
33281749 GGGCTAGAGTTGTACTCGGATGGGTGACCTCTTGGGAAGTCCTCGGGTGGCACCCCTCCTATTCT
518 GGGCTAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTT
* *
33281814 ATATTTCATGCAATTTTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAAT
583 ATATTTCATGTAATTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAAT
* * * * * *
33281879 CACTTCAAACGTTATTTGGTCAAATTTGAATTCAAATATGAGGCGCAAGTGTGATAAGGGGTAGC
648 CACTTGAAACGTTATTTGATCGAATTTGAATTCAAATTTGAGGCACAAGTGCGATAAGGGGTAGC
* * * ** * *
33281944 CTTGATATAAATAGAGTGCGCGGGAGTTGACTGGT-T--AGATTATACCAGCACTAATGCACCGA
713 CTTTACATAAATAGATTGCGCAAGAGTTGACTGGTGTGCA-ATGATACCAGCACTAATGCACCGG
* * * * * * *
33282006 ATACCATCAAAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACCTTTT
777 ATCCCATCAGAACTCCACAATTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGATCTCTT
* * * *
33282071 GGTAAGTCCTCGAGTTGCACCACTCGTATT
842 GGGAAGTCCTCGTGTTGCACCCCTCCTATT
* * * * * *
33282101 TTATATTTCATATAA-TT-TTTTTAAACATCATTTAACTAAGTAGTTATATGCGTTTTACTAAAG
1 TTATATTTCATGTAATTTATTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
* * ** *
33282164 AAATCACATGAATCGTTATTTTGGTCGAATTTGCTTTCAAATTTGAGGCGCAAGTGCGATAAGGG
66 AAATCACTTGAAACGTTA-TTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGG
* * * * * * **
33282229 GAAGTCTTTATATAAATAGATTGCGCAAGAGTTGAAGGTTGCAATCATACCAGCACTAATATACC
130 GTAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGG-GGCGATCATACCAGCACTAATGCACC
* * * * * * * * * *
33282294 AGATCCCTTCAGAACTTCATAGTAAATCATG-TTGGGGTGAGAGTAGTACTAGGATGGGTAACTC
194 CGATCCCATCAGAACTCCGTAGTTAAGCGTGCTTGGGCT-AGAGTAGTACTAGGATGGGTGACTT
* * *
33282358 CTTGGGAAGTCCTCGTGTTGCACCCCTTCCATTTTATATTTCATATACAGTTTTTTTAAACATTA
258 CTTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTA-ATTTTTTTTAAACA-TA
*
33282423 -TTTAACTAATTAGTTATTTGCGTTTTATGAAATAAATCACTTGAAATGTTATTTGGTAGAATTT
321 GTTTAACTAATTAGTTATTTGCGTTTTATGAAATAAATCACTTGAAATGTTATTTGGTCGAATTT
* *
33282487 GAATTGAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGGGT
386 GAATTCAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGT
* * * * * * **
33282552 TGAGGGGTGCGATCATACCAACAATAATGCACTGGATCCCATCAGAACTCTGCAATTAATAGTGC
451 TGACGAGTGCGATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAGCGTGC
* * * * * *
33282617 TCGAGCGAGAGTAGTGCTAGGATGGGTGACCTCCT-GGAAGTCCTCATGTTGCACCCGTCCCATT
516 TTGGGCTAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATT
33282681 TT
581 TT
33282683 GTAACACCCT
Statistics
Matches: 5894, Mismatches: 708, Indels: 214
0.86 0.10 0.03
Matches are distributed among these distances:
869 87 0.01
870 557 0.09
871 597 0.10
872 467 0.08
873 258 0.04
874 253 0.04
875 23 0.00
876 2057 0.35
877 318 0.05
878 552 0.09
879 474 0.08
880 250 0.04
881 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (871 bp):
TTATATTTCATGTAATTTATTTTTAAACATCGTTTAACTAATTAGTTATTTGCGTTTTACGAAAT
AAATCACTTGAAACGTTATTTGGTCGAATTTGAATTCAAATTCGAGGCGCAAGTGCGATAAGGGG
TAGCCTTTATATAAATAGAATGCGCAAGAGTTGACGGGGCGATCATACCAGCACTAATGCACCCG
ATCCCATCAGAACTCCGTAGTTAAGCGTGCTTGGGCTAGAGTAGTACTAGGATGGGTGACTTCTT
GGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATATTTCATGTAATTTTTTTTAAACATAGTTTA
ACTAATTAGTTATTTGCGTTTTATGAAATAAATCACTTGAAATGTTATTTGGTCGAATTTGAATT
CAAATTCGAGGCGCAAGTGCGATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGACG
AGTGCGATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGG
CTAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATA
TTTCATGTAATTTTTTTAAACATTGTTTAACTAATTAGTTATTTGCGTTTTACGAAATAAATCAC
TTGAAACGTTATTTGATCGAATTTGAATTCAAATTTGAGGCACAAGTGCGATAAGGGGTAGCCTT
TACATAAATAGATTGCGCAAGAGTTGACTGGTGTGCAATGATACCAGCACTAATGCACCGGATCC
CATCAGAACTCCACAATTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGATCTCTTGGGA
AGTCCTCGTGTTGCACCCCTCCTATT
Found at i:33283716 original size:27 final size:27
Alignment explanation
Indices: 33283630--33283717 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
33283620 CTCGATTTAC
33283630 AAAATTATCGAAATACCCTTGTAGGGT
1 AAAATTATCGAAATACCCTTGTAGGGT
* *
33283657 AGAAA-TATCGAAATACCCCTGTAAGGT
1 A-AAATTATCGAAATACCCTTGTAGGGT
* *
33283684 AGAATTATCGAGATACCCTTGTAGGGT
1 AAAATTATCGAAATACCCTTGTAGGGT
33283711 AAAATTA
1 AAAATTA
33283718 CCATTTTGCC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.04
27 47 0.90
28 3 0.06
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTTGTAGGGT
Found at i:33284205 original size:22 final size:22
Alignment explanation
Indices: 33284153--33284217 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
33284143 GCCAATTATT
* *
33284153 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
33284175 CT-ACATATGGATCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
33284197 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
33284218 ACATATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:33284456 original size:27 final size:26
Alignment explanation
Indices: 33284376--33284483 Score: 90
Period size: 27 Copynumber: 4.0 Consensus size: 26
33284366 ATTCTGTTAA
* * *
33284376 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTACCACAATATCTG-TTCTG
* * * * *
33284403 GCGGCTATGCCATAAATATTTGTTCTG
1 GTGGCTCTACCA-CAATATCTGTTCTG
33284430 GTGGCTCTACCACAATATCTGTATCTG
1 GTGGCTCTACCACAATATCTGT-TCTG
** *
33284457 GTGATTCTATCACAATATCTGTTCTG
1 GTGGCTCTACCACAATATCTGTTCTG
33284483 G
1 G
33284484 CAGCCATGCT
Statistics
Matches: 66, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
26 13 0.20
27 47 0.71
28 6 0.09
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.39
Consensus pattern (26 bp):
GTGGCTCTACCACAATATCTGTTCTG
Found at i:33284610 original size:6 final size:6
Alignment explanation
Indices: 33284601--33284698 Score: 67
Period size: 6 Copynumber: 15.8 Consensus size: 6
33284591 TTGCATTCAC
* * *
33284601 ATTCTG ATTCTG ATTCTG -TTACCTG GTACTG ATTCTG ATTCTG -TCATCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
33284651 ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
33284699 AGATCTAATA
Statistics
Matches: 72, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 56 0.78
7 9 0.12
8 3 0.04
ACGTcount: A:0.17, C:0.20, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:33284654 original size:19 final size:19
Alignment explanation
Indices: 33284632--33284681 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
33284622 CCTGGTACTG
*
33284632 ATTCTGATTCTGTCATCTA
1 ATTCTGATTCTGTCACCTA
*
33284651 ATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGTCACCTA
33284670 ATTCTGATTCTG
1 ATTCTGATTCTG
33284682 ATTCTCATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.46
Consensus pattern (19 bp):
ATTCTGATTCTGTCACCTA
Found at i:33284679 original size:25 final size:24
Alignment explanation
Indices: 33284601--33284686 Score: 92
Period size: 25 Copynumber: 3.7 Consensus size: 24
33284591 TTGCATTCAC
33284601 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTG-TACCTG
* *
33284626 GTACTGATTCTGATTCTGT--C--
1 ATTCTGATTCTGATTCTGTACCTG
*
33284646 A-TCTAATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGT-ACCTG
33284670 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
33284687 CATTTTGATT
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
19 15 0.31
22 2 0.04
24 2 0.04
25 30 0.61
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (24 bp):
ATTCTGATTCTGATTCTGTACCTG
Found at i:33286147 original size:269 final size:276
Alignment explanation
Indices: 33285352--33287102 Score: 1034
Period size: 293 Copynumber: 6.1 Consensus size: 276
33285342 GGGTGTTACA
* * * *
33285352 CATTTTATATTTCATATAA-TT-TTTTTTGAACATCGTTTAACTAATTCGTTATTT-TCGTTTTA
1 CATTTTATATTTCAAAAAATTTATTTTTTAAACATCGTTTAACTAATTAGTTATTTGT-GTTTT-
* * * * *
33285414 G-GAATTAAATCACTTTAAATTTTATTTGGTCGAATTTGCATTCAAATTTGAGGCGCAAGTGCGA
64 GCGAAATAAATCACTTGAAATGTTATTTTGTCGAATTTTCATTCAAA-TT----CG--AG-GCGA
* * * * *
33285478 TAA-GGAGTAGCCTTTTTATGAATAGATTG-ACAAGATTTGACAGGTGCGATCTTACTAGCACTA
121 TAACAG-GTAGCC------T-AATAGATTGCACAAGAGTTGACGGGTGTGATCATACTAGCACTA
** * * * * * * *
33285541 ATGCACCGGATCCCATCAGAATTCCACACTTAAGCATGCTTGGGCGATAGTAGTAGTAGGATGGG
178 ATGCAATGGATCCCATCAGAACTCCGCAGTTGAGCGTGCTTGGGC-AGAGTAGTACTAGGATGGG
* * *
33285606 TGA---CC-------TCCTCGTGTTGCACCCCTTC
242 TGACCTCCTGGGAAGTCCTCATGTTGCACCTCTCC
* * ** * *
33285631 CATTTTATATTTCATATAA-TT-TTTTTTAAACATAATTTAACTAATTAGTCATTT-TCATTTTT
1 CATTTTATATTTCAAAAAATTTATTTTTTAAACATCGTTTAACTAATTAGTTATTTGT--GTTTT
** * *
33285693 TTGAAATAAATCACTTGAAATGTTATCTGGTCGAATTTGT-ATTCAAATTCAAGGCGCAAGTGCG
64 GCGAAATAAATCACTTGAAATGTTATTTTGTCGAATTT-TCATTCAAATT-----CG--AG-GCG
** * * *
33285757 ATAAGGGGTAGCCTTTATATAAGTAAATTGCGCAAGAGTTGACGGGTGTGATCATTCCAGCACTA
120 ATAACAGGTAGCC--TA-AT-AG---ATTGCACAAGAGTTGACGGGTGTGATCATACTAGCACTA
* * * * *
33285822 TTGCATTGGATCCCATCAGAACTCCGCAGTTGGGCGTGCTTGGGCTGAGTAGTACTAGGATGGCT
178 ATGCAATGGATCCCATCAGAACTCCGCAGTTGAGCGTGCTTGGGCAGAGTAGTACTAGGATGGGT
*
33285887 GACCTCCTGGGAAGTCGTCATGTTGCACCTCTCC
243 GACCTCCTGGGAAGTCCTCATGTTGCACCTCTCC
* *
33285921 CATTTTATATTTCAAAAAAATTATTTTTTAAACATCGTTTAACTAATTCGTTATTTGTGTTTTGC
1 CATTTTATATTTCAAAAAATTTATTTTTTAAACATCGTTTAACTAATTAGTTATTTGTGTTTTGC
* *
33285986 AAAATAAATAACTTGAAATGTTATTTTGTCGAATTTTCATTCAAATTCGAGGCG-T-A-A-GT-G
66 GAAATAAATCACTTGAAATGTTATTTTGTCGAATTTTCATTCAAATTCGAGGCGATAACAGGTAG
* ** * *
33286046 -C-GATAGATTGTGCTAGAGTTGACGGGTATGATCATACTAGCACTAATGCAATGGATCCCATCA
131 CCTAATAGATTGCACAAGAGTTGACGGGTGTGATCATACTAGCACTAATGCAATGGATCCCATCA
* ** * * *
33286109 GAATTCCATAGTTAAGTGTGATT-GGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC
196 GAACTCCGCAGTTGAGCGTGCTTGGGC-AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC
* *
33286173 TCATGTTGCACCCCTTC
260 TCATGTTGCACCTCTCC
* * * * * *
33286190 CATTTTATATTTCATATAATTTCTTTTTTTTAATCATCGTTTAACTAATTAGTTCTTTGTGTTCT
1 CATTTTATATTTCA-AAAAATT-TATTTTTTAAACATCGTTTAACTAATTAGTTATTTGTGTTTT
* * * * * * *
33286255 ACGAAATAAGTCACTTGAAATGTTATTTGGTCAAATTTTTATTCGAATTTGAGGTACAAGTGCGA
64 GCGAAATAAATCACTTGAAATGTTATTTTGTCGAATTTTCATTC-AA----A--TTCGAG-GCGA
* * * *
33286320 TAACAGGTAGCCTTTATATAAATAGATTGCACAAGAGTTGACGGGCGCGATCATAGTAGAACTAA
121 TAACAGGTAGCC------T-AATAGATTGCACAAGAGTTGACGGGTGTGATCATACTAGCACTAA
** * *
33286385 TGCACCGGATCCCATCTGAACTCCGCAGTTGAGCCTGCTTGGGCGAGAGTAGTACTAGGATGGGT
179 TGCAATGGATCCCATCAGAACTCCGCAGTTGAGCGTGCTTGGGC-AGAGTAGTACTAGGATGGGT
* * *
33286450 GACCTCCAGGGAATTCCTCGTGTTGCACCTCTCC
243 GACCTCCTGGGAAGTCCTCATGTTGCACCTCTCC
* * * * *
33286484 CATTTTATATTTCATATAATTTCTTTTTGTAAACATTGTTTAACTAATTAGTTATTTGGGTTTTG
1 CATTTTATATTTCAAAAAATTTATTTTT-TAAACATCGTTTAACTAATTAGTTATTTGTGTTTTG
* ** *
33286549 TGAAATAAATCACTTGAAACATT-TTTTGGTCGAATTTGCATTCAAATTCGAGGTGCAACTACGA
65 CGAAATAAATCACTTGAAATGTTATTTT-GTCGAATTTTCATTCAAATTCGA-G-G------CGA
* *
33286613 TAA-AGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGACAGGTGTGATCATACCT-GCACT
121 TAACA-GGTAGCC------T-AATAGATTGCACAAGAGTTGACGGGTGTGATCATA-CTAGCACT
** * * * * *
33286676 AATGCGCTGGATCCCATCAGAAATTCGCAG-TGAGGCGTGCTTGGGTGAGAGTAGTACAAGGATA
177 AATGCAATGGATCCCATCAGAACTCCGCAGTTGA-GCGTGCTTGGG-CAGAGTAGTACTAGGATG
* * * *
33286740 GGTGACCTACTTGGAAGTGCTCGTGTTGCACC-CATCC
240 GGTGACCTCCTGGGAAGTCCTCATGTTGCACCTC-TCC
* * * * * *
33286777 CA-TTT-TATTTCATATAATTT-TTTGTTAAACATCATTTAACTAATTAATTATTTTTGTTTTGC
1 CATTTTATATTTCAAAAAATTTATTTTTTAAACATCGTTTAACTAATTAGTTATTTGTGTTTTGC
* * *
33286839 AAAATAAATCATTTGAAACT-TT-TTTTGGTCGAATTTGCATTCAAATTCATGGCGCAAGTGCGA
66 GAAATAAATCACTTGAAA-TGTTATTTT-GTCGAATTTTCATTCAAA-T--T--CG--AG-GCGA
* * * * ** *
33286902 TAA-GGGTAGCTTTTATATAAATAAATTGCTCAAGAGTTGACGGGTGCAATCATACAAGCACTAA
121 TAACAGGTAGC------CT-AATAGATTGCACAAGAGTTGACGGGTGTGATCATACTAGCACTAA
** * * * *** * * * *
33286966 TGCACCGGATTCTATCAGAGCTCTATAGCT-AACTGTGCTTGGGCGAAAGTAGTACTAGGATGGC
179 TGCAATGGATCCCATCAGAACTCCGCAGTTGAGC-GTGCTTGGGC-AGAGTAGTACTAGGATGGG
*
33287030 TGTCCTCCTGGGAAGTCCTCATGTTGCACC-CATCC
242 TGACCTCCTGGGAAGTCCTCATGTTGCACCTC-TCC
* * *
33287065 CATTTT-T-TTTCATATAATTT-TTTGTTAAACATCGTTTA
1 CATTTTATATTTCAAAAAATTTATTTTTTAAACATCGTTTA
33287103 TATTAGAAAT
Statistics
Matches: 1192, Mismatches: 196, Indels: 159
0.77 0.13 0.10
Matches are distributed among these distances:
268 3 0.00
269 129 0.11
270 4 0.00
271 74 0.06
272 4 0.00
273 2 0.00
275 1 0.00
276 5 0.00
277 3 0.00
278 5 0.00
279 57 0.05
280 89 0.07
281 67 0.06
282 2 0.00
283 7 0.01
284 3 0.00
285 1 0.00
286 5 0.00
287 5 0.00
288 151 0.13
289 83 0.07
290 39 0.03
291 62 0.05
292 49 0.04
293 269 0.23
294 69 0.06
295 3 0.00
296 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (276 bp):
CATTTTATATTTCAAAAAATTTATTTTTTAAACATCGTTTAACTAATTAGTTATTTGTGTTTTGC
GAAATAAATCACTTGAAATGTTATTTTGTCGAATTTTCATTCAAATTCGAGGCGATAACAGGTAG
CCTAATAGATTGCACAAGAGTTGACGGGTGTGATCATACTAGCACTAATGCAATGGATCCCATCA
GAACTCCGCAGTTGAGCGTGCTTGGGCAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCT
CATGTTGCACCTCTCC
Found at i:33286579 original size:293 final size:288
Alignment explanation
Indices: 33286060--33287102 Score: 1164
Period size: 293 Copynumber: 3.6 Consensus size: 288
33286050 AGATTGTGCT
** ** * * *
33286060 AGAGTTGACGGGTATGATCATACTAGCACTAATGCAATGGATCCCATCAGAATTCCATAGTTAAG
1 AGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCGGATCCCATCAGAACTCCACAGTTGAG
* * * * *
33286125 TGTGATT-GGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCCTT
66 CGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCATC
* * * *
33286189 CCATTTTATATTTCATATAATTTCTTTTTTTTAATCATCGTTTAACTAATTAGTTCTTTGTGTTC
131 CCATTTT-TATTTCATATAA--T-TTTTTGTTAAACATCGTTTAACTAATTAGTTATTTGTGTTT
* * ** * * ** *
33286254 TACGAAATAAGTCACTTGAAATGTTATTTGGTCAAATTTTTATTCGAATTTGAGGTACAAGTGCG
192 TGCGAAATAAATCACTTGAAACATTTTTTGGTCGAATTTGCATTC-AATTTGAGGTGCAAGTGCG
33286319 ATAACAGGTAGCCTTTATATAAATAGATTGCACA
256 ATAA-AGGTAGCCTTTATATAAATAGATTGCACA
* * * * *
33286353 AGAGTTGACGGGCGCGATCATAGTAGAACTAATGCACCGGATCCCATCTGAACTCCGCAGTTGAG
1 AGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCGGATCCCATCAGAACTCCACAGTTGAG
* * * *
33286418 CCTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCAGGGAATTCCTCGTGTTGCACCTC-T
66 CGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCATGTTGCACC-CAT
* * *
33286482 CCCATTTTATATTTCATATAATTTCTTTTTGTAAACATTGTTTAACTAATTAGTTATTTGGGTTT
130 CCCATTTT-TATTTCATATAATTT-TTTGT-TAAACATCGTTTAACTAATTAGTTATTTGTGTTT
* * * *
33286547 TGTGAAATAAATCACTTGAAACATTTTTTGGTCGAATTTGCATTCAAATTCGAGGTGCAACTACG
192 TGCGAAATAAATCACTTGAAACATTTTTTGGTCGAATTTGCATTC-AATTTGAGGTGCAAGTGCG
*
33286612 ATAAAGGGTAGCCTTTATATAAATAGATTGCGCA
256 ATAAA-GGTAGCCTTTATATAAATAGATTGCACA
* * * * * * *
33286646 AGAGTTGACAGGTGTGATCATACCT-GCACTAATGCGCTGGATCCCATCAGAAATTCGCAG-TGA
1 AGAGTTGACGGGTGCGATCATA-CTAGCACTAATGCACCGGATCCCATCAGAACTCCACAGTTGA
* * * * * * *
33286709 GGCGTGCTTGGGTGAGAGTAGTACAAGGATAGGTGACCTACTTGGAAGTGCTCGTGTTGCACCCA
65 -GCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCA
* * *
33286774 TCCCA-TTTTATTTCATATAATTTTTTGTTAAACATCATTTAACTAATTAATTATTTTTGTTTTG
129 TCCCATTTTTATTTCATATAATTTTTTGTTAAACATCGTTTAACTAATTAGTTATTTGTGTTTTG
* * * * * *
33286838 CAAAATAAATCATTTGAAACTTTTTTTGGTCGAATTTGCATTCAAATTCATGGCGCAAGTGCGAT
194 CGAAATAAATCACTTGAAACATTTTTTGGTCGAATTTGCATTCAATTTGA-GGTGCAAGTGCGAT
* * * *
33286903 AAGGGTAGCTTTTATATAAATAAATTGCTCA
258 AAAGGTAGCCTTTATATAAATAGATTGCACA
* * * * * * * * *
33286934 AGAGTTGACGGGTGCAATCATACAAGCACTAATGCACCGGATTCTATCAGAGCTCTATAGCT-AA
1 AGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCGGATCCCATCAGAACTCCACAGTTGAG
* * *
33286998 CTGTGCTTGGGCGAAAGTAGTACTAGGATGGCTGTCCTCCTGGGAAGTCCTCATGTTGCACCCAT
66 C-GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCAT
33287063 CCCATTTTT-TTTCATATAATTTTTTGTTAAACATCGTTTA
130 CCCATTTTTATTTCATATAATTTTTTGTTAAACATCGTTTA
33287103 TATTAGAAAT
Statistics
Matches: 632, Mismatches: 105, Indels: 31
0.82 0.14 0.04
Matches are distributed among these distances:
287 2 0.00
288 161 0.25
289 88 0.14
290 4 0.01
291 17 0.03
292 14 0.02
293 274 0.43
294 71 0.11
295 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (288 bp):
AGAGTTGACGGGTGCGATCATACTAGCACTAATGCACCGGATCCCATCAGAACTCCACAGTTGAG
CGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCATC
CCATTTTTATTTCATATAATTTTTTGTTAAACATCGTTTAACTAATTAGTTATTTGTGTTTTGCG
AAATAAATCACTTGAAACATTTTTTGGTCGAATTTGCATTCAATTTGAGGTGCAAGTGCGATAAA
GGTAGCCTTTATATAAATAGATTGCACA
Found at i:33287074 original size:855 final size:824
Alignment explanation
Indices: 33285369--33287074 Score: 1839
Period size: 855 Copynumber: 2.0 Consensus size: 824
33285359 TATTTCATAT
* * * * *
33285369 AATTTTTTTTGAACATCGTTTAACTAATTCGTTATTTTCGTTTTAGGAATTAAATCACTTTAAAT
1 AATTTTTTTTGAACATCGTTTAACTAATTAGTTATTTTCGTTCTACGAAATAAATCACTTGAAAT
* * * * * *
33285434 TTTATTTGGTCGAATTTGCATTCAAATTTGAGGCGCAAGTGCGATAAGGAGTAGCCTTTTTATGA
66 GTTATTTGGTCAAATTTGCATTCAAATTTGAGGCACAAGTGCGATAAAGAGTAGCCTTTATATAA
* * * * *
33285499 ATAGATTGACAAGATTTGACAGGTGCGATCTTACTAGCACTAATGCACCGGATCCCATCAGAATT
131 ATAGATTGACAAGAGTTGACAGGCGCGATCATACTAGAACTAATGCACCGGATCCCATCAGAACT
* *
33285564 CCACACTTAAGCATGCTTGGGCGATAGTAGTAGTAGGATGGGTGACCTCCTCGTGTTGCACCCCT
196 CCACACTTAAGCATGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTCGTGTTGCACCCCT
* * *
33285629 TCCATTTTATATTTCATATAATTTTTTTTAAACATAATTTAACTAATTAGTCATTTTCATTTTTT
261 CCCATTTTATATTTCATATAATTTTTTTTAAACATAATTTAACTAATTAGTCATTTTCAGTTTTG
** * * *
33285694 TGAAATAAATCACTTGAAATGTTATCTGGTCGAATTTGTATTCAAATTCAAGGCGCAAGTGCGAT
326 TGAAATAAATCACTTGAAACATTATCTGGTCGAATTTGCATTCAAATTCAAGGCGCAACTACGAT
* * * * *
33285759 AAGGGGTAGCCTTTATATAAGTAAATTGCGCAAGAGTTGACGGGTGTGATCATTCCAGCACTATT
391 AAAGGGTAGCCTTTATATAAATAAATTGCGCAAGAGTTGACAGGTGTGATCATACCAGCACTAAT
* * *
33285824 GCATTGGATCCCATCAGAACTCCGCAGTTGGGCGTGCTTGGGCTGAGTAGTACTAGGATGGCTGA
456 GCACTGGATCCCATCAGAAATCCGCAGTTGGGCGTGCTTGGGCTGAGTAGTACAAGGATGGCTGA
*
33285889 CCTCCTGGGAAGTCGTCATGTTGCACCTCTCCCATTTTATATTTCAAAAAAATTATTTTTTAAAC
521 CCTACTGGGAAGTCGTCATGTTGCACCTCTCCCATTTTATATTTCAAAAAAATTATTTTTTAAAC
* **
33285954 ATCGTTTAACTAATTCGTTATTTGTGTTTTGCAAAATAAATAACTTGAAATGTTATTTTGTCGAA
586 ATCATTTAACTAATTAATTATTTGTGTTTTGCAAAATAAATAACTTGAAATGTTATTTTGTCGAA
* * ** *
33286019 TTTTCATTCAAATTCGAGGCGTAAGTGCGATAGATTGTGCTAGAGTTGACGGGTATGATCATACT
651 TTTGCATTCAAATTCGAGGCGCAAGTGCGATAGATTGTGCTAGAGTTGACGGGTACAATCATACA
* * * *
33286084 AGCACTAATGCAATGGATCCCATCAGAATTCCATAGTTAAGTGTGATTGGCAAGAGTAGTACTAG
716 AGCACTAATGCAACGGATCCCATCAGAACTCCATAGCTAACTGTGATTGGCAAGAGTAGTACTAG
* *
33286149 GATGGGTGACCTCCTGGGAAGTCCTCATGTTGCACCCCTTCCATTTTATATTTC
781 GATGGCTGACCTCCTGGGAAGTCCTCATGTTGCACCCCATCC----------TC
* * *
33286203 ATATAATTTCTTTTTTTTAATCATCGTTTAACTAATTAGTTCTTTGT-GTTCTACGAAATAAGTC
1 ----AA--T-TTTTTTTGAA-CATCGTTTAACTAATTAGTTATTT-TCGTTCTACGAAATAAATC
** * *
33286267 ACTTGAAATGTTATTTGGTCAAATTTTTATTCGAATTTGAGGTACAAGTGCGATAACAG-GTAGC
57 ACTTGAAATGTTATTTGGTCAAATTTGCATTCAAATTTGAGGCACAAGTGCGATAA-AGAGTAGC
* *
33286331 CTTTATATAAATAGATTGCACAAGAGTTGACGGGCGCGATCATAGTAGAACTAATGCACCGGATC
121 CTTTATATAAATAGATTG-ACAAGAGTTGACAGGCGCGATCATACTAGAACTAATGCACCGGATC
* * * * *
33286396 CCATCTGAACTCCGCAGTTGAGCCTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCAGGG
185 CCATCAGAACTCCACACTTAAGCATGCTTGGGCGAGAGTAGTACTAGGATGGGTGA---CC----
* **
33286461 AATTCCTCGTGTTGCACCTCTCCCATTTTATATTTCATATAATTTCTTTTTGTAAACATTGTTTA
243 ---TCCTCGTGTTGCACCCCTCCCATTTTATATTTCATATAA-TT-TTTTT-TAAACATAATTTA
* ** * *
33286526 ACTAATTAGTTA-TTTGGGTTTTGTGAAATAAATCACTTGAAACATTTTTTGGTCGAATTTGCAT
302 ACTAATTAGTCATTTTCAGTTTTGTGAAATAAATCACTTGAAACATTATCTGGTCGAATTTGCAT
* * *
33286590 TCAAATTCGAGGTGCAACTACGATAAAGGGTAGCCTTTATATAAATAGATTGCGCAAGAGTTGAC
367 TCAAATTCAAGGCGCAACTACGATAAAGGGTAGCCTTTATATAAATAAATTGCGCAAGAGTTGAC
* * *
33286655 AGGTGTGATCATACCTGCACTAATGCGCTGGATCCCATCAGAAATTCGCAG-TGAGGCGTGCTTG
432 AGGTGTGATCATACCAGCACTAATGCACTGGATCCCATCAGAAATCCGCAGTTG-GGCGTGCTTG
* *
33286719 GG-TGAGAGTAGTACAAGGATAGG-TGACCTACTTGGAAGT-GCTCGTGTTGCACC-CATCCCA-
496 GGCT--GAGTAGTACAAGGAT-GGCTGACCTACTGGGAAGTCG-TCATGTTGCACCTC-TCCCAT
* * *
33286779 TTT-TATTTC-ATATAATT-TTTTGTTAAACATCATTTAACTAATTAATTATTTTTGTTTTGCAA
556 TTTATATTTCAAAAAAATTATTTT-TTAAACATCATTTAACTAATTAATTATTTGTGTTTTGCAA
* *
33286841 AATAAATCATTTGAAACT-TT-TTTTGGTCGAATTTGCATTCAAATTC-ATGGCGCAAGTGCGAT
620 AATAAATAACTTGAAA-TGTTATTTT-GTCGAATTTGCATTCAAATTCGA-GGCGCAAGTGCG--
* *
33286903 AAGGGTAGCTTTTATATAAATAAATTGCTCAAGAGTTGACGGGTGCAATCATACAAGCACTAATG
680 -A---TAG-------AT---T---GTGCT--AGAGTTGACGGGTACAATCATACAAGCACTAATG
* * * * * *
33286968 CACCGGATTCTATCAGAGCTCTATAGCTAACTGTGCTTGGGCGAA-AGTAGTACTAGGATGGCTG
726 CAACGGATCCCATCAGAACTCCATAGCTAACTGTGATT-GGC-AAGAGTAGTACTAGGATGGCTG
*
33287032 TCCTCCTGGGAAGTCCTCATGTTGCA-CCCATCC-C
789 ACCTCCTGGGAAGTCCTCATGTTGCACCCCATCCTC
33287066 -ATTTTTTTT
1 AATTTTTTTT
33287075 CATATAATTT
Statistics
Matches: 722, Mismatches: 93, Indels: 89
0.80 0.10 0.10
Matches are distributed among these distances:
838 2 0.00
840 1 0.00
841 9 0.01
842 104 0.14
843 90 0.12
846 2 0.00
852 9 0.01
853 126 0.17
854 12 0.02
855 173 0.24
856 68 0.09
857 2 0.00
858 1 0.00
859 3 0.00
863 1 0.00
866 2 0.00
869 1 0.00
872 4 0.01
874 64 0.09
875 46 0.06
876 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (824 bp):
AATTTTTTTTGAACATCGTTTAACTAATTAGTTATTTTCGTTCTACGAAATAAATCACTTGAAAT
GTTATTTGGTCAAATTTGCATTCAAATTTGAGGCACAAGTGCGATAAAGAGTAGCCTTTATATAA
ATAGATTGACAAGAGTTGACAGGCGCGATCATACTAGAACTAATGCACCGGATCCCATCAGAACT
CCACACTTAAGCATGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTCGTGTTGCACCCCT
CCCATTTTATATTTCATATAATTTTTTTTAAACATAATTTAACTAATTAGTCATTTTCAGTTTTG
TGAAATAAATCACTTGAAACATTATCTGGTCGAATTTGCATTCAAATTCAAGGCGCAACTACGAT
AAAGGGTAGCCTTTATATAAATAAATTGCGCAAGAGTTGACAGGTGTGATCATACCAGCACTAAT
GCACTGGATCCCATCAGAAATCCGCAGTTGGGCGTGCTTGGGCTGAGTAGTACAAGGATGGCTGA
CCTACTGGGAAGTCGTCATGTTGCACCTCTCCCATTTTATATTTCAAAAAAATTATTTTTTAAAC
ATCATTTAACTAATTAATTATTTGTGTTTTGCAAAATAAATAACTTGAAATGTTATTTTGTCGAA
TTTGCATTCAAATTCGAGGCGCAAGTGCGATAGATTGTGCTAGAGTTGACGGGTACAATCATACA
AGCACTAATGCAACGGATCCCATCAGAACTCCATAGCTAACTGTGATTGGCAAGAGTAGTACTAG
GATGGCTGACCTCCTGGGAAGTCCTCATGTTGCACCCCATCCTC
Found at i:33299958 original size:34 final size:34
Alignment explanation
Indices: 33299915--33299982 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
33299905 TCGGACATAT
33299915 TTCTGTGCTGATATTGCTAAAATCACATTAGGTA
1 TTCTGTGCTGATATTGCTAAAATCACATTAGGTA
33299949 TTCTGTGCTGATATTGCTAAAATCACATTAGGTA
1 TTCTGTGCTGATATTGCTAAAATCACATTAGGTA
33299983 ATCCATTGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (34 bp):
TTCTGTGCTGATATTGCTAAAATCACATTAGGTA
Found at i:33305644 original size:287 final size:287
Alignment explanation
Indices: 33304646--33306153 Score: 1834
Period size: 288 Copynumber: 5.3 Consensus size: 287
33304636 ATTTTTTATA
* *
33304646 GTTTAACTAATTAATTATTTACATTTTGCAAAATAAATCATTTGAAACGTTATTTAGTCGAATTT
1 GTTTAACTAATTAGTTATTTACATTTTGCAAAATAAATCATTTGAAACGTTATTTGGTCGAATTT
* * * * * *
33304711 ACATTCAGATTCGAGGTGCAAGTGCAATAAGGGGTAGCCTTTATATAAATAAATTGTGCAAGAGT
66 GCATTCAAATTCAAGGCGCAAGTGCAATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGT
* ** ** * * *
33304776 TGACGGCTGCGATCATACC-GACAGAAATGTGCTGGATCCCATCAGAACACTGCAGTGAAGCGTG
131 TGACGGGTGCGATCATACCAG-CACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAGCGTG
* * *
33304840 CTTGGGCGAGAGTAGTACTAGAATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCA-CCC-CCC-T
195 CTTGGGCGAGAGTAGTACTAGGATGGGTGACCTTCTAGGAAGTTCTCGTGTTGCACCCCTCCCAT
*
33304902 TTTATTTCATATAAGTTTTTTAAACATC
260 TTTATTTCATATAATTTTTTTAAACATC
* * * * *
33304930 ATTTAACTAATTAATTATTTACATTTTGTAAAATAAATCATTTGAAACATTATTTGGTCAAATTT
1 GTTTAACTAATTAGTTATTTACATTTTGCAAAATAAATCATTTGAAACGTTATTTGGTCGAATTT
* * *
33304995 GCATTCAAATTCAAAGCGCACGTGCAATAAGGGGTAGCCTTTATATAAATAGAATGCGCAAGAGT
66 GCATTCAAATTCAAGGCGCAAGTGCAATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGT
* * * * * * *
33305060 TGACGGGTGCGATCATACCAACACTAATACACCGGATCCAATTAGAACTCCGCAGCTAAGCATGC
131 TGACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAGCGTGC
* * * * * *
33305125 -TCGGCTAGGAGTAGTACTAAGATAGGTGACC-TCTTGGGAAGTTCTCATGTTGCACCCCTCCCA
196 TTGGGCGA-GAGTAGTACTAGGATGGGTGACCTTC-TAGGAAGTTCTCGTGTTGCACCCCTCCCA
* *
33305188 TTTCATTTGATATAATTTTTTTAAAACATC
259 TTTTATTTCATATAATTTTTTT-AAACATC
* * * *
33305218 GTTTAACTAATTTGTTATTTGCATTTTGCAAAATAAATCATTTGAAATGTTATTTGGTCAAATTT
1 GTTTAACTAATTAGTTATTTACATTTTGCAAAATAAATCATTTGAAACGTTATTTGGTCGAATTT
* * * *
33305283 GCATTCAAATAT-GAGGCGCAAGTGCGATAATGGGTAGCCTTTATATAAATAGCTTGCGCAAGAG
66 GCATTCAAAT-TCAAGGCGCAAGTGCAATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAG
* * * * * *
33305347 TTGCCGGGTGCGATCATACCATCACTAATGCATTAGATCCCATCAGAACTCCACAGTTAAGTGTG
130 TTGACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAGCGTG
* * * *
33305412 CTTGGGCGAGAGCAGTACTAGGATGGGTGACCTTGTGGGAAGTTCTCGTGTTGAACCCCTCCCAT
195 CTTGGGCGAGAGTAGTACTAGGATGGGTGACCTTCTAGGAAGTTCTCGTGTTGCACCCCTCCCAT
*
33305477 TTTATTTCATACAATTTTTTTAAACA-C
260 TTTATTTCATATAATTTTTTTAAACATC
* * * * * *
33305504 TGTTTCAA-TAATTAGTTATTTTCGTTTTGCGAAATAAATCATTTAAAACGTTATTTAGTCCAAT
1 -GTTT-AACTAATTAGTTATTTACATTTTGCAAAATAAATCATTTGAAACGTTATTTGGTCGAAT
*
33305568 TTGCATTCAAATTCAAGGCGCAAGTGCAATAAGGGGTAGCCTTTATATAAATAGATTGTGCAAGA
64 TTGCATTCAAATTCAAGGCGCAAGTGCAATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGA
* * **
33305633 GTTGACGGGTGCGATCGTACCAGCACTAATGTACTGGATCCCATCAGAACTCCGCAACTAAGCGT
129 GTTGACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAGCGT
* * * * *
33305698 GCTTGGGAGAGAGTTGTACTAGGATGGGTGACCTTTTAGGAAGTCCTCGTGTTGTACCCCTCCCA
194 GCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTTCTAGGAAGTTCTCGTGTTGCACCCCTCCCA
*
33305763 TTTTATTTCATATAATCATTTTTAAACATC
259 TTTTATTTCATATAAT-TTTTTTAAACATC
*** * * * * *
33305793 GTTTAACTAATTAGTTATTTTTGTTTTGCGAAATAAATTATTTGAAACATTATTTTGTTGAATTT
1 GTTTAACTAATTAGTTATTTACATTTTGCAAAATAAATCATTTGAAACGTTATTTGGTCGAATTT
*** *
33305858 GCATTCAAATTCAAGGAAAAAGTGCAATAAGGGGTAGCCTTTATATAAATAAATTGCGCAAGAGT
66 GCATTCAAATTCAAGGCGCAAGTGCAATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGT
* * * * * * * *
33305923 TAATGAGTGCAATTATACCAGCGCTAATGC-GTGGGATCCCATCAGAACTCCGCAGTCAAGCGTG
131 TGACGGGTGCGATCATACCAGCACTAATGCACT-GGATCCCATCAGAACTCCGCAGTTAAGCGTG
* * *
33305987 CTTGGGTGAGAGTAGTACTAGGATGGGTGTCCTCCTAGGAAG-TCATCGTGTTGCACCCCTCCCA
195 CTTGGGCGAGAGTAGTACTAGGATGGGTGACCTTCTAGGAAGTTC-TCGTGTTGCACCCCTCCCA
* *
33306051 TTTTATTTCATATAATTTTTTTAAATATT
259 TTTTATTTCATATAATTTTTTTAAACATC
* * * * * * *
33306080 GTTTAGCTAATTAGTTATTTGCGCTTTT-CGAAATAAATAATTTGAAACGCTCTTTGGTCGAATT
1 GTTTAACTAATTAGTTATTTAC-ATTTTGCAAAATAAATCATTTGAAACGTTATTTGGTCGAATT
33306144 TGCATTCAAA
65 TGCATTCAAA
33306154 CTCGAGGTAC
Statistics
Matches: 1051, Mismatches: 154, Indels: 35
0.85 0.12 0.03
Matches are distributed among these distances:
283 6 0.01
284 202 0.19
285 3 0.00
286 5 0.00
287 335 0.32
288 492 0.47
289 8 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Consensus pattern (287 bp):
GTTTAACTAATTAGTTATTTACATTTTGCAAAATAAATCATTTGAAACGTTATTTGGTCGAATTT
GCATTCAAATTCAAGGCGCAAGTGCAATAAGGGGTAGCCTTTATATAAATAGATTGCGCAAGAGT
TGACGGGTGCGATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGTTAAGCGTGC
TTGGGCGAGAGTAGTACTAGGATGGGTGACCTTCTAGGAAGTTCTCGTGTTGCACCCCTCCCATT
TTATTTCATATAATTTTTTTAAACATC
Found at i:33305778 original size:575 final size:572
Alignment explanation
Indices: 33304646--33306153 Score: 1925
Period size: 575 Copynumber: 2.6 Consensus size: 572
33304636 ATTTTTTATA
*
33304646 GTTTAACTAATTAATTATTTACATTTTGCAAAATAAATCATTTGAAACGTTATTTAGTCGAATTT
1 GTTTAACTAATTAGTTATTTACATTTTGCAAAATAAATCATTTGAAACGTTATTTAGTCGAATTT
* * * *
33304711 ACATTCAGATTCGAGGTGCAAGTGCAATAAGGGGTAGCCTTTATATAAATAAATTGTGCAAGAGT
66 GCATTCAAATTCGAGGAGCAAGTGCAATAAGGGGTAGCCTTTATATAAATAAATTGCGCAAGAGT
* ** * * * * *
33304776 TGACGGCTGCGATCATACCGACAGAAATGTGCTGGATCCCATCAGAACACTGCAGTGAAGCGTGC
131 TGACGGGTGCGATCATACC-ACACTAATGCGTTGGATCCCATCAGAACTCCGCAGTCAAGCGTGC
* *
33304841 TTGGGCGAGAGTAGTACTAGAATGGGTGACCTCCTAGGAAGTCCTCGTGTTGCA-CCC-CCC-TT
195 TTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTTCTCGTGTTGCACCCCTCCCATT
* * * * **
33304903 TTATTTCATATAAGTTTTTTAAACATCATTTAACTAATTAATTATTTACATTTTGTAAAATAAAT
260 TTATTTCATATAATTTTTTTAAACAT-GTTTAA-TAATTAGTTATTTACGTTTTGCGAAATAAAT
* *
33304968 CATTTGAAACATTATTTGGTCAAATTTGCATTCAAATTCAAAGCGCACGTGCAATAAGGGGTAGC
323 CATTTGAAACGTTATTTGGTCAAATTTGCATTCAAATTCAAAGCGCAAGTGCAATAAGGGGTAGC
33305033 CTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAACACTAATACACCGGATC
388 CTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAACACTAATACACCGGATC
* * * *
33305098 CAATTAGAACTCCGCAGCTAAGCATGCTCGGCTAGGAGTAGTACTAAGATAGGTGACCTCTTGGG
453 CAATCAGAACTCCGCAACTAAGCATGCTCGGCGAGGAGTAGTACTAAGATAGGTGACCTCTTAGG
* * *
33305163 AAGTTCTCATGTTGCACCCCTCCCATTTCATTTGATATAAT-TTTTTTAAAACATC
518 AAGTCCTCATGTTGCACCCCTCCCATTTCATTTCATATAATCATTTTT-AAACATC
* * * * *
33305218 GTTTAACTAATTTGTTATTTGCATTTTGCAAAATAAATCATTTGAAATGTTATTTGGTCAAATTT
1 GTTTAACTAATTAGTTATTTACATTTTGCAAAATAAATCATTTGAAACGTTATTTAGTCGAATTT
* * * **
33305283 GCATTCAAATAT-GAGGCGCAAGTGCGATAATGGGTAGCCTTTATATAAATAGCTTGCGCAAGAG
66 GCATTCAAAT-TCGAGGAGCAAGTGCAATAAGGGGTAGCCTTTATATAAATAAATTGCGCAAGAG
* * * * * *
33305347 TTGCCGGGTGCGATCATACCATCACTAATGCATTAGATCCCATCAGAACTCCACAGTTAAGTGTG
130 TTGACGGGTGCGATCATACCA-CACTAATGCGTTGGATCCCATCAGAACTCCGCAGTCAAGCGTG
* ** * *
33305412 CTTGGGCGAGAGCAGTACTAGGATGGGTGACCTTGTGGGAAGTTCTCGTGTTGAACCCCTCCCAT
194 CTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTTCTCGTGTTGCACCCCTCCCAT
* *
33305477 TTTATTTCATACAATTTTTTTAAACACTGTTTCAATAATTAGTTATTTTCGTTTTGCGAAATAAA
259 TTTATTTCATATAATTTTTTTAAACA-TGTTT-AATAATTAGTTATTTACGTTTTGCGAAATAAA
* * * *
33305542 TCATTTAAAACGTTATTTAGTCCAATTTGCATTCAAATTCAAGGCGCAAGTGCAATAAGGGGTAG
322 TCATTTGAAACGTTATTTGGTCAAATTTGCATTCAAATTCAAAGCGCAAGTGCAATAAGGGGTAG
* * * * ** *
33305607 CCTTTATATAAATAGATTGTGCAAGAGTTGACGGGTGCGATCGTACCAGCACTAATGTACTGGAT
387 CCTTTATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAACACTAATACACCGGAT
* * * * * * *
33305672 CCCATCAGAACTCCGCAACTAAGCGTGCTTGG-GAGAGAGTTGTACTAGGATGGGTGACCTTTTA
452 CCAATCAGAACTCCGCAACTAAGCATGCTCGGCGAG-GAGTAGTACTAAGATAGGTGACCTCTTA
* * *
33305736 GGAAGTCCTCGTGTTGTACCCCTCCCATTTTATTTCATATAATCATTTTTAAACATC
516 GGAAGTCCTCATGTTGCACCCCTCCCATTTCATTTCATATAATCATTTTTAAACATC
*** * * * * *
33305793 GTTTAACTAATTAGTTATTTTTGTTTTGCGAAATAAATTATTTGAAACATTATTTTGTTGAATTT
1 GTTTAACTAATTAGTTATTTACATTTTGCAAAATAAATCATTTGAAACGTTATTTAGTCGAATTT
* **
33305858 GCATTCAAATTCAAGGAAAAAGTGCAATAAGGGGTAGCCTTTATATAAATAAATTGCGCAAGAGT
66 GCATTCAAATTCGAGGAGCAAGTGCAATAAGGGGTAGCCTTTATATAAATAAATTGCGCAAGAGT
* * * * * * *
33305923 TAATGAGTGCAATTATACCAGCGCTAATGCGTGGGATCCCATCAGAACTCCGCAGTCAAGCGTGC
131 TGACGGGTGCGATCATACCA-CACTAATGCGTTGGATCCCATCAGAACTCCGCAGTCAAGCGTGC
* *
33305988 TTGGGTGAGAGTAGTACTAGGATGGGTGTCCTCCTAGGAAG-TCATCGTGTTGCACCCCTCCCAT
195 TTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTTC-TCGTGTTGCACCCCTCCCAT
* * *
33306052 TTTATTTCATATAATTTTTTTAAATATTGTTTAGCTAATTAGTTATTTGCGCTTTT-CGAAATAA
259 TTTATTTCATATAATTTTTTTAAACA-TGTTTA-ATAATTAGTTATTTACG-TTTTGCGAAATAA
* * * *
33306116 ATAATTTGAAACGCTCTTTGGTCGAATTTGCATTCAAA
321 ATCATTTGAAACGTTATTTGGTCAAATTTGCATTCAAA
33306154 CTCGAGGTAC
Statistics
Matches: 800, Mismatches: 123, Indels: 23
0.85 0.13 0.02
Matches are distributed among these distances:
571 1 0.00
572 211 0.26
573 4 0.00
574 9 0.01
575 563 0.70
576 12 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Consensus pattern (572 bp):
GTTTAACTAATTAGTTATTTACATTTTGCAAAATAAATCATTTGAAACGTTATTTAGTCGAATTT
GCATTCAAATTCGAGGAGCAAGTGCAATAAGGGGTAGCCTTTATATAAATAAATTGCGCAAGAGT
TGACGGGTGCGATCATACCACACTAATGCGTTGGATCCCATCAGAACTCCGCAGTCAAGCGTGCT
TGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTAGGAAGTTCTCGTGTTGCACCCCTCCCATTT
TATTTCATATAATTTTTTTAAACATGTTTAATAATTAGTTATTTACGTTTTGCGAAATAAATCAT
TTGAAACGTTATTTGGTCAAATTTGCATTCAAATTCAAAGCGCAAGTGCAATAAGGGGTAGCCTT
TATATAAATAGAATGCGCAAGAGTTGACGGGTGCGATCATACCAACACTAATACACCGGATCCAA
TCAGAACTCCGCAACTAAGCATGCTCGGCGAGGAGTAGTACTAAGATAGGTGACCTCTTAGGAAG
TCCTCATGTTGCACCCCTCCCATTTCATTTCATATAATCATTTTTAAACATC
Found at i:33308823 original size:12 final size:11
Alignment explanation
Indices: 33308796--33308823 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
33308786 AAATAGACTC
33308796 ATTTTTGTACA
1 ATTTTTGTACA
33308807 ATTTTTGTACA
1 ATTTTTGTACA
33308818 ATTTTT
1 ATTTTT
33308824 AATTATTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.61
Consensus pattern (11 bp):
ATTTTTGTACA
Found at i:33309356 original size:51 final size:51
Alignment explanation
Indices: 33309218--33309359 Score: 164
Period size: 51 Copynumber: 2.8 Consensus size: 51
33309208 CGGATGCCCG
* * *
33309218 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCGACCTTCTTCACAAA
1 GTGGCCTGCACATAGTACCACACTTGTGA-TCAAAGCTATCTTCTTCACAAA
* **
33309269 GTGGCCTTCACATAGTACCACACTTGTGA-CAAAAGCTATCTT-TTACACAGC
1 GTGGCCTGCACATAGTACCACACTTGTGATC-AAAGCTATCTTCTT-CACAAA
* *
33309320 GTGGCCTGCACTTAGTACCACACATGTGATCAAAGCTATC
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTATC
33309360 GGGTACGCAT
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
50 3 0.04
51 73 0.94
52 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTATCTTCTTCACAAA
Found at i:33317748 original size:19 final size:20
Alignment explanation
Indices: 33317703--33317749 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 20
33317693 GAGCATAGGA
33317703 GGGCAAAAAAAGAGAGAAAC
1 GGGCAAAAAAAGAGAGAAAC
* **
33317723 GATGCAAAAATGGAGA-AAAC
1 G-GGCAAAAAAAGAGAGAAAC
33317743 GGGCAAA
1 GGGCAAA
33317750 CGTGGGAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 5 0.23
20 6 0.27
21 11 0.50
ACGTcount: A:0.55, C:0.11, G:0.30, T:0.04
Consensus pattern (20 bp):
GGGCAAAAAAAGAGAGAAAC
Found at i:33330110 original size:56 final size:56
Alignment explanation
Indices: 33330050--33330297 Score: 370
Period size: 56 Copynumber: 4.4 Consensus size: 56
33330040 TCCTAGATAG
** * * *
33330050 GGTCTTACTCATAAACACATATCGGAATCACATATCGATGCCAATGTATTAAATGT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGT
** *
33330106 GGTCTTACTCGCACACACATATCAAAATCACATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGT
* * *
33330162 GGTCTTACTTGCACACACATATCGGAATCACATATTGATGCCAACGTATTAAGCGT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGT
* * *
33330218 GGTCTTACTTGCACACACATATCGGAATCACATATTGATGCCAACATATTAAACGT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGT
33330274 GGTCTTACTCGCACACACATATCG
1 GGTCTTACTCGCACACACATATCG
33330298 TACAATGCCA
Statistics
Matches: 175, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 175 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:33330409 original size:41 final size:43
Alignment explanation
Indices: 33330302--33330505 Score: 193
Period size: 41 Copynumber: 4.8 Consensus size: 43
33330292 ATATCGTACA
* * * * *
33330302 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATATCG
* * * * *
33330345 ATGCTACTGTCCCAGATAGGGTCTTACATG-AATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATATCG
* * * *
33330386 ATGCTAATGTCCTAGACATGGTCTTACACGTAATCACATATCT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATATCG
* * *
33330429 ATGCCAACGTCCCTA-ACGTGGTCTTACAC-AAATCAAATA-CG
1 ATGCCAATGTCCC-AGACATGGTCTTACACGTAATCAAATATCG
* *
33330470 ATGCCGATGTCCCAGACATGGCCTTACACGTAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
33330506 CATGTCGAAA
Statistics
Matches: 129, Mismatches: 27, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
40 1 0.01
41 51 0.40
42 29 0.22
43 47 0.36
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATATCG
Found at i:33330427 original size:84 final size:84
Alignment explanation
Indices: 33330302--33330513 Score: 250
Period size: 84 Copynumber: 2.5 Consensus size: 84
33330292 ATATCGTACA
* * * * *
33330302 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATATCGATG-CTACTGTCCC-AGATAG-
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAAC-GTCCCTA-A-AGT
**
33330364 GGTCTTACATGAATCAAATACG
63 GGTCTTACACAAATCAAATACG
* * * *
33330386 ATGCTAATGTCCTAGACATGGTCTTACACGTAATCACATATCTATGCCAACGTCCCTAACGTGGT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACGTCCCTAAAGTGGT
33330451 CTTACACAAATCAAATACG
66 CTTACACAAATCAAATACG
* * *
33330470 ATGCCGATGTCCCAGACATGGCCTTACACGTAATCACATGTCGA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGA
33330514 AAATACTATG
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
83 1 0.01
84 103 0.95
85 4 0.04
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (84 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACGTCCCTAAAGTGGT
CTTACACAAATCAAATACG
Found at i:33333374 original size:45 final size:45
Alignment explanation
Indices: 33333306--33333395 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
33333296 TAGAGAGTGA
*
33333306 ATGTACCAGTAATAACATTTGGGGTTGAAGCCTCCTCGCAAGCAC
1 ATGTACCAGTAATAACATCTGGGGTTGAAGCCTCCTCGCAAGCAC
*
33333351 ATGTACCAGTAATAATATCTGGGGTTGAAGCCTCCTCGCAAGCAC
1 ATGTACCAGTAATAACATCTGGGGTTGAAGCCTCCTCGCAAGCAC
33333396 GAATAGCATA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (45 bp):
ATGTACCAGTAATAACATCTGGGGTTGAAGCCTCCTCGCAAGCAC
Found at i:33333869 original size:10 final size:10
Alignment explanation
Indices: 33333854--33333884 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
33333844 TCGAAATTAG
33333854 CTTTTGTTTT
1 CTTTTGTTTT
33333864 CTTTTGTTTT
1 CTTTTGTTTT
*
33333874 CTTTTCTTTT
1 CTTTTGTTTT
33333884 C
1 C
33333885 GTATAACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.16, G:0.06, T:0.77
Consensus pattern (10 bp):
CTTTTGTTTT
Found at i:33336361 original size:56 final size:56
Alignment explanation
Indices: 33336275--33336520 Score: 381
Period size: 56 Copynumber: 4.4 Consensus size: 56
33336265 TCCCAAACAA
* * *
33336275 GGTCTTACTCGTA-ACCACATATCGAAATCACATATCGATGCCAACATATTAAACGT
1 GGTCTTACTCGCACA-CACATATCGGAATCACATATCGATGCCAACGTATTAAACGT
*
33336331 GGTCTTACTCGCACACACATATCGGAATCACATATCAATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGT
* * * *
33336387 GGTCTTACTTGCACACACTTATCAGAATCACATATCGATGCCAACGCATTAAACGT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGT
*
33336443 GGTCTTACTCG--CACACATATCGGAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGT
33336497 GGTCTTACTCGCACACACATATCG
1 GGTCTTACTCGCACACACATATCG
33336521 TCCAACCCCA
Statistics
Matches: 173, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
54 50 0.29
56 122 0.71
57 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (56 bp):
GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:33336511 original size:110 final size:111
Alignment explanation
Indices: 33336275--33336520 Score: 381
Period size: 110 Copynumber: 2.2 Consensus size: 111
33336265 TCCCAAACAA
* *
33336275 GGTCTTACTCGTA-ACCACATATCGAAATCACATATCGATGCCAACATATTAAACGTGGTCTTAC
1 GGTCTTACTCGCACA-CACATATCGAAATCACATATCGATGCCAACACATTAAACGTGGTCTTAC
33336339 TCGCACACACATATCGGAATCACATATCAATGCCAACGTATTAAACGT
65 TCG-ACACACATATCGGAATCACATATCAATGCCAACGTATTAAACGT
* * *
33336387 GGTCTTACTTGCACACACTTATC-AGAATCACATATCGATGCCAACGCATTAAACGTGGTCTTAC
1 GGTCTTACTCGCACACACATATCGA-AATCACATATCGATGCCAACACATTAAACGTGGTCTTAC
* *
33336451 TCG-CACACATATCGGAATCACATATCGATGCCAACGTATTAAATGT
65 TCGACACACATATCGGAATCACATATCAATGCCAACGTATTAAACGT
33336497 GGTCTTACTCGCACACACATATCG
1 GGTCTTACTCGCACACACATATCG
33336521 TCCAACCCCA
Statistics
Matches: 122, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
110 62 0.51
111 1 0.01
112 58 0.48
113 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (111 bp):
GGTCTTACTCGCACACACATATCGAAATCACATATCGATGCCAACACATTAAACGTGGTCTTACT
CGACACACATATCGGAATCACATATCAATGCCAACGTATTAAACGT
Found at i:33336593 original size:43 final size:43
Alignment explanation
Indices: 33336545--33336736 Score: 266
Period size: 41 Copynumber: 4.6 Consensus size: 43
33336535 CCCAGACGTT
* * * *
33336545 GTCTTACATGTAATCACATATTGATGCCGATGTCCCAGACAAG
1 GTCTTACACGTAATCACATATCGATGCCGATGTCCCAAACATG
*
33336588 GTCTTACACG-AATCAAATAT-GATGCCGATGTCCCAAACATG
1 GTCTTACACGTAATCACATATCGATGCCGATGTCCCAAACATG
* * *
33336629 GTCTTACACGTAATCACATATCGATGCTGACGTCCCAGACATG
1 GTCTTACACGTAATCACATATCGATGCCGATGTCCCAAACATG
*
33336672 GTCTTACACG-AATCAAATA-CGATGCCGATGTCCCAAACATG
1 GTCTTACACGTAATCACATATCGATGCCGATGTCCCAAACATG
*
33336713 GTCTTAAACGTAATCACATATCGA
1 GTCTTACACGTAATCACATATCGA
33336737 AAATCCTATG
Statistics
Matches: 131, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
41 57 0.44
42 34 0.26
43 40 0.31
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
GTCTTACACGTAATCACATATCGATGCCGATGTCCCAAACATG
Found at i:33336648 original size:84 final size:84
Alignment explanation
Indices: 33336545--33336736 Score: 321
Period size: 84 Copynumber: 2.3 Consensus size: 84
33336535 CCCAGACGTT
* * * *
33336545 GTCTTACATGTAATCACATATTGATGCCGATGTCCCAGACAAGGTCTTACACGAATCAAATATGA
1 GTCTTACACGTAATCACATATCGATGCCGACGTCCCAGACAAGGTCTTACACGAATCAAATACGA
33336610 TGCCGATGTCCCAAACATG
66 TGCCGATGTCCCAAACATG
* *
33336629 GTCTTACACGTAATCACATATCGATGCTGACGTCCCAGACATGGTCTTACACGAATCAAATACGA
1 GTCTTACACGTAATCACATATCGATGCCGACGTCCCAGACAAGGTCTTACACGAATCAAATACGA
33336694 TGCCGATGTCCCAAACATG
66 TGCCGATGTCCCAAACATG
*
33336713 GTCTTAAACGTAATCACATATCGA
1 GTCTTACACGTAATCACATATCGA
33336737 AAATCCTATG
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 101 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (84 bp):
GTCTTACACGTAATCACATATCGATGCCGACGTCCCAGACAAGGTCTTACACGAATCAAATACGA
TGCCGATGTCCCAAACATG
Found at i:33339256 original size:46 final size:45
Alignment explanation
Indices: 33339084--33339259 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 45
33339074 TGAAACCCGC
* * *
33339084 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGTAT
1 CCATAA-CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
* * *
33339130 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGTTGCCTAGTT-ACAT
1 CCATAA-CGAACTCGGACTCAACTCAACGAGTTC-G--GAC-A-TTCGCAT
* *
33339180 -C-TCACGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
33339223 CCATAACTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAC-GAACTCGGACTCAACTCAACGAGTTCGGA
33339260 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 5 0.05
46 59 0.55
47 26 0.24
48 2 0.02
49 3 0.03
50 2 0.02
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:33340692 original size:17 final size:17
Alignment explanation
Indices: 33340670--33340714 Score: 90
Period size: 17 Copynumber: 2.6 Consensus size: 17
33340660 GCTTTTTCCA
33340670 CAACACTTTTACAAGTT
1 CAACACTTTTACAAGTT
33340687 CAACACTTTTACAAGTT
1 CAACACTTTTACAAGTT
33340704 CAACACTTTTA
1 CAACACTTTTA
33340715 TTTCTTAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.36
Consensus pattern (17 bp):
CAACACTTTTACAAGTT
Found at i:33346754 original size:45 final size:46
Alignment explanation
Indices: 33346590--33346763 Score: 207
Period size: 45 Copynumber: 3.8 Consensus size: 46
33346580 ATGTAACCCG
* * *
33346590 CCATAAG-GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
33346635 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
33346685 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
33346727 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
33346764 TGCTCACATC
Statistics
Matches: 109, Mismatches: 9, Indels: 21
0.78 0.06 0.15
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 2 0.02
44 2 0.02
45 33 0.30
46 31 0.28
47 26 0.24
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:33346755 original size:92 final size:93
Alignment explanation
Indices: 33346597--33346766 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
33346587 CCGCCATAAG
* *
33346597 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33346662 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
33346690 GAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
33346754 CGAGTTCGGATGC
66 CGAGTTCGGATGC
33346767 TCACATCCTA
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 49 0.66
93 25 0.34
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:33348556 original size:68 final size:67
Alignment explanation
Indices: 33348468--33348623 Score: 260
Period size: 67 Copynumber: 2.3 Consensus size: 67
33348458 ATACTATATA
* *
33348468 GTAGCTAGGT-ACATGTGTGATACGGGATGTATCCCATGTAGAGAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTA-CCCATGTAGACAAAAGAGCTACGTGAGAGATA
33348532 AAT
65 AAT
33348535 GTAGCTAGGTCACATGTGTGATACGGGATGTACCCATGTAGACAAAAGAGCTACGTGAGAGATAA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTACCCATGTAGACAAAAGAGCTACGTGAGAGATAA
33348600 AT
66 AT
* *
33348602 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
33348624 TCCAAGTGAA
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
67 63 0.75
68 21 0.25
ACGTcount: A:0.32, C:0.13, G:0.31, T:0.24
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTACCCATGTAGACAAAAGAGCTACGTGAGAGATAA
AT
Found at i:33348664 original size:67 final size:64
Alignment explanation
Indices: 33348468--33348687 Score: 187
Period size: 67 Copynumber: 3.3 Consensus size: 64
33348458 ATACTATATA
* * * * * *
33348468 GTAGCTAGGT-ACATGTGTGATACGGGATGTATCCCATGTAGAGAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCGCATGAGTGATAAGGGAAGGA-CCCATGTAGACAAGAGAGCTAC--G-GAGATA
33348532 AAT
62 AAT
* * * * * *
33348535 GTAGCTAGGTCACATGTGTGATACGGGATGTACCCATGTAGACAAAAGAGCTACGTGAGAGATAA
1 GTAGCTAGGTCGCATGAGTGATAAGGGAAGGACCCATGTAGACAAGAGAGCTAC--G-GAGATAA
33348600 AT
63 AT
*
33348602 GTAGCTAGGTCGCATGAGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTAC-GAGATA
1 GTAGCTAGGTCGCATGAGTGA-T--AAGGGAAGGAC-CCATGTAGACAAGAGAGCTACGGAGATA
33348666 AAT
62 AAT
33348669 CG--GCTAGGTCGCATGAGTG
1 -GTAGCTAGGTCGCATGAGTG
33348688 GACAAGTGTT
Statistics
Matches: 138, Mismatches: 9, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
66 17 0.12
67 71 0.51
68 23 0.17
70 7 0.05
71 20 0.14
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (64 bp):
GTAGCTAGGTCGCATGAGTGATAAGGGAAGGACCCATGTAGACAAGAGAGCTACGGAGATAAAT
Found at i:33356277 original size:20 final size:21
Alignment explanation
Indices: 33356240--33356279 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
33356230 CGTACTTCAG
*
33356240 AAAAATGGGCCTCGATGGGCC
1 AAAAATGGGCCTCAATGGGCC
*
33356261 AAAACTGGGCC-CAATGGGC
1 AAAAATGGGCCTCAATGGGC
33356280 TTACGGACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.30, C:0.25, G:0.33, T:0.12
Consensus pattern (21 bp):
AAAAATGGGCCTCAATGGGCC
Found at i:33363269 original size:79 final size:81
Alignment explanation
Indices: 33363127--33363309 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
33363117 TACTCATTCA
* * *
33363127 AATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
33363191 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
**
33363207 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
33363269 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
33363286 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
33363310 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:33363309 original size:40 final size:40
Alignment explanation
Indices: 33363125--33363309 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
33363115 GCTACTCATT
* * *
33363125 CAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
33363165 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
33363205 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
33363244 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
33363285 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33363310 CATCATTCGA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 79 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:33368039 original size:40 final size:40
Alignment explanation
Indices: 33367965--33368186 Score: 315
Period size: 40 Copynumber: 5.6 Consensus size: 40
33367955 AACCCAAGTA
* *
33367965 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * *
33368004 CCTTCAGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
33368044 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
33368084 CCTTCGGGACTTAGCCCAGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
33368124 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
33368164 CCTTCGAGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
33368187 CATTCGAATA
Statistics
Matches: 164, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 14 0.09
40 144 0.88
41 6 0.04
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:33368097 original size:80 final size:80
Alignment explanation
Indices: 33367965--33368186 Score: 356
Period size: 80 Copynumber: 2.8 Consensus size: 80
33367955 AACCCAAGTA
* * *
33367965 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCAGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
33368029 TCAATAGCACAAAAG
66 TCAATAGCACAAAAG
*
33368044 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
33368109 TCAATAGCACAAATG
66 TCAATAGCACAAAAG
** * *
33368124 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATGCCTTCGAGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
33368187 CATTCGAATA
Statistics
Matches: 132, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 13 0.10
80 119 0.90
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAAAG
Found at i:33393913 original size:25 final size:25
Alignment explanation
Indices: 33393885--33393937 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
33393875 GTTCTGACCC
* *
33393885 ACAGCTCATGTGAGCATACCGACTT
1 ACAGCTCATATAAGCATACCGACTT
*
33393910 ACAGCTCATATAAGCATATCGACTT
1 ACAGCTCATATAAGCATACCGACTT
33393935 ACA
1 ACA
33393938 ACTTGTGAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (25 bp):
ACAGCTCATATAAGCATACCGACTT
Found at i:33400693 original size:21 final size:21
Alignment explanation
Indices: 33400667--33400706 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
33400657 CACTTGACAT
33400667 AGGGGCACACGCCCATGTGAA
1 AGGGGCACACGCCCATGTGAA
*
33400688 AGGGGCACACGCCCGTGTG
1 AGGGGCACACGCCCATGTG
33400707 GCCAATTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.30, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGAA
Found at i:33401922 original size:47 final size:48
Alignment explanation
Indices: 33401871--33401980 Score: 138
Period size: 47 Copynumber: 2.4 Consensus size: 48
33401861 TCTTGGATAC
* *
33401871 GGTCTTATACTGGCTCAT-ATCTC-AAGTCGATGCCATGTCCCAGACAT
1 GGTCTTACACTGGCTCATCATCTCGAAGCCGATG-CATGTCCCAGACAT
* *
33401918 GGTCTTACACTGACT-ATCATCTCGTAGCCGATGCATGTCCCAGACAT
1 GGTCTTACACTGGCTCATCATCTCGAAGCCGATGCATGTCCCAGACAT
*
33401965 -GTCTTACACTAGCTCA
1 GGTCTTACACTGGCTCA
33401981 CACACGAATG
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
46 14 0.26
47 33 0.61
48 7 0.13
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
GGTCTTACACTGGCTCATCATCTCGAAGCCGATGCATGTCCCAGACAT
Found at i:33409452 original size:47 final size:49
Alignment explanation
Indices: 33409379--33409515 Score: 174
Period size: 48 Copynumber: 2.9 Consensus size: 49
33409369 AGGGTAAGGT
* * * *
33409379 GCCGATGCCATGTCCTAGACACGGTCTTATACTGGCTCAT-ATCTC-AA
1 GCCGATGCCATGTCCCACACATGGTCTTACACTGGCTCATCATCTCGAA
* * *
33409426 GTCGATGCCATGTCCCACACATGGTCTTACACTGACT-ATCATCTCGTA
1 GCCGATGCCATGTCCCACACATGGTCTTACACTGGCTCATCATCTCGAA
*
33409474 GCCAATGCCATGTCCCACACATGGTCTTACACTGGCTC-TCAT
1 GCCGATGCCATGTCCCACACATGGTCTTACACTGGCTCATCAT
33409516 AATGTGGTTG
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
46 2 0.03
47 36 0.47
48 39 0.51
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCACACATGGTCTTACACTGGCTCATCATCTCGAA
Found at i:33412278 original size:96 final size:96
Alignment explanation
Indices: 33412094--33412287 Score: 264
Period size: 96 Copynumber: 2.0 Consensus size: 96
33412084 TCGCTTCTTT
*
33412094 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAACTTCTTGGGCTCCTT
1 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAACTTCTTGGGCTCCGT
* * ** * *
33412159 GTCTGCTCCATTGTTTCCTTCGAT-GACAGAC
66 ATCTACTCCATCATTCCCATCGATAG-CAGAC
* * * *
33412190 TTGCTCCTCTTTGCCCTCTTGGCTTCGGCTTTTCCCTTGCTTGAACCAAGCTTCTTGGGCTCCGT
1 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAACTTCTTGGGCTCCGT
*
33412255 ATCTACTCGATCATTCCCATCGATAGCAGAC
66 ATCTACTCCATCATTCCCATCGATAGCAGAC
33412286 TT
1 TT
33412288 CCTCAGACAC
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
96 84 0.99
97 1 0.01
ACGTcount: A:0.13, C:0.33, G:0.18, T:0.37
Consensus pattern (96 bp):
TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAACTTCTTGGGCTCCGT
ATCTACTCCATCATTCCCATCGATAGCAGAC
Found at i:33413602 original size:28 final size:28
Alignment explanation
Indices: 33413567--33413639 Score: 146
Period size: 28 Copynumber: 2.6 Consensus size: 28
33413557 TCGAACCAAC
33413567 AGCTCGGATACCACTTGGTTCGAACCCT
1 AGCTCGGATACCACTTGGTTCGAACCCT
33413595 AGCTCGGATACCACTTGGTTCGAACCCT
1 AGCTCGGATACCACTTGGTTCGAACCCT
33413623 AGCTCGGATACCACTTG
1 AGCTCGGATACCACTTG
33413640 TCATGGGGCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.25
Consensus pattern (28 bp):
AGCTCGGATACCACTTGGTTCGAACCCT
Found at i:33415409 original size:27 final size:28
Alignment explanation
Indices: 33415325--33415422 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
33415315 CATGAGATTG
* * * *
33415325 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
33415354 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
33415382 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
33415409 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
33415423 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:33415433 original size:27 final size:27
Alignment explanation
Indices: 33415353--33415435 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
33415343 TAAATTGTAC
* *
33415353 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
33415381 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
33415408 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
33415435 A
1 A
33415436 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:33415436 original size:29 final size:27
Alignment explanation
Indices: 33415325--33415436 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
33415315 CATGAGATTG
** * *
33415325 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
33415354 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
33415382 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
33415409 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
33415437 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:33423284 original size:27 final size:28
Alignment explanation
Indices: 33423200--33423297 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
33423190 CATGAGATTG
* * * *
33423200 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
33423229 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
33423257 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
33423284 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
33423298 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Done.