Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 113 of 250
Found at i:36214790 original size:10 final size:10
Alignment explanation
Indices: 36214755--36214832 Score: 72
Period size: 10 Copynumber: 7.7 Consensus size: 10
36214745 GTATATAATG
36214755 TATAAAAA-A
1 TATAAAAATA
* *
36214764 AATAGAAATA
1 TATAAAAATA
36214774 -A-AAAAATA
1 TATAAAAATA
36214782 TATAAAAATA
1 TATAAAAATA
36214792 TATAAAAATAA
1 TATAAAAAT-A
*
36214803 TATAATATATAAA
1 TATAA-A-A-ATA
36214816 TATAAAAATA
1 TATAAAAATA
36214826 TATAAAA
1 TATAAAA
36214833 TATTTAGAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
8 6 0.11
9 8 0.14
10 26 0.46
11 7 0.12
12 2 0.04
13 7 0.12
14 1 0.02
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.27
Consensus pattern (10 bp):
TATAAAAATA
Found at i:36214790 original size:18 final size:18
Alignment explanation
Indices: 36214755--36214832 Score: 58
Period size: 18 Copynumber: 4.4 Consensus size: 18
36214745 GTATATAATG
36214755 TATAAAAA-AAATAGAAATA
1 TATAAAAATAAA-A-AAATA
36214774 -A-AAAAATATATAAAAATA
1 TATAAAAATA-A-AAAAATA
* *
36214792 TATAAAAATAATATAATA
1 TATAAAAATAAAAAAATA
*
36214810 TAT--AAATATAAAAATA
1 TATAAAAATAAAAAAATA
36214826 TATAAAA
1 TATAAAA
36214833 TATTTAGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 15
0.70 0.07 0.22
Matches are distributed among these distances:
16 13 0.28
17 5 0.11
18 17 0.36
19 4 0.09
20 8 0.17
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.27
Consensus pattern (18 bp):
TATAAAAATAAAAAAATA
Found at i:36214792 original size:8 final size:8
Alignment explanation
Indices: 36214776--36214835 Score: 59
Period size: 8 Copynumber: 7.0 Consensus size: 8
36214766 TAGAAATAAA
36214776 AAAATATAT
1 AAAA-ATAT
36214785 AAAAATAT
1 AAAAATAT
36214793 ATAAAA-AT
1 A-AAAATAT
36214801 AATATAATAT
1 AA-A-AATAT
*
36214811 ATAAATAT
1 AAAAATAT
36214819 AAAAATAT
1 AAAAATAT
36214827 ATAAAATAT
1 A-AAAATAT
36214836 TTAGAATATA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
7 1 0.02
8 22 0.50
9 18 0.41
10 3 0.07
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (8 bp):
AAAAATAT
Found at i:36214801 original size:28 final size:27
Alignment explanation
Indices: 36214755--36214815 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
36214745 GTATATAATG
*
36214755 TATAAAAAAAATAGAAATAAAAAAATA
1 TATAAAAAAAATAAAAATAAAAAAATA
* * *
36214782 TATAAAAATATATAAAAATAATATAATA
1 TATAAAAA-AAATAAAAATAAAAAAATA
36214810 TATAAA
1 TATAAA
36214816 TATAAAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 8 0.28
28 21 0.72
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (27 bp):
TATAAAAAAAATAAAAATAAAAAAATA
Found at i:36214810 original size:16 final size:15
Alignment explanation
Indices: 36214783--36214834 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 15
36214773 AAAAAAATAT
36214783 ATAAAAATATATAAAA
1 ATAAAAATATAT-AAA
36214799 ATAATATAATATATAAA
1 ATAA-A-AATATATAAA
36214816 TATAAAAATATATAAA
1 -ATAAAAATATATAAA
36214832 ATA
1 ATA
36214835 TTTAGAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
15 3 0.09
16 14 0.42
17 5 0.15
18 11 0.33
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAAAAATATATAAA
Found at i:36214843 original size:18 final size:18
Alignment explanation
Indices: 36214776--36214847 Score: 60
Period size: 18 Copynumber: 4.1 Consensus size: 18
36214766 TAGAAATAAA
*
36214776 AAAATATATAAAAATATAT
1 AAAATAT-TTAAAATATAT
* *
36214795 AAAA-ATAATATAATATAT
1 AAAATAT-TTAAAATATAT
*
36214813 -AAATA-TAAAAATATAT
1 AAAATATTTAAAATATAT
*
36214829 AAAATATTTAGAATATAT
1 AAAATATTTAAAATATAT
36214847 A
1 A
36214848 TATAATAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
16 8 0.19
17 8 0.19
18 22 0.52
19 4 0.10
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (18 bp):
AAAATATTTAAAATATAT
Found at i:36214844 original size:34 final size:35
Alignment explanation
Indices: 36214781--36214873 Score: 109
Period size: 34 Copynumber: 2.7 Consensus size: 35
36214771 ATAAAAAAAT
*
36214781 ATATAAAAATATATAAAA-ATAATATAATATATAA
1 ATATAAAAATATATAAAATATAATAGAATATATAA
* *
36214815 ATATAAAAATATATAAAATAT-TTAGAATATATAT
1 ATATAAAAATATATAAAATATAATAGAATATATAA
* *
36214849 ATAATAAAATAGATATAATATATAA
1 AT-ATAAAA-ATATATAAAATATAA
36214874 ATAAATTGAA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
34 30 0.61
35 8 0.16
36 11 0.22
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (35 bp):
ATATAAAAATATATAAAATATAATAGAATATATAA
Found at i:36216988 original size:44 final size:42
Alignment explanation
Indices: 36216925--36217030 Score: 106
Period size: 44 Copynumber: 2.5 Consensus size: 42
36216915 ATGTGTTTTT
* * * * *
36216925 GTGTAAGACCACGCCTGGGAAATTGGCATGGACT-TATGATTTAC
1 GTGTAAGACCATGTCTGGGAAATCGGCAT-CA-TATATAATTT-C
* *
36216969 GTGTAAGACCATGTCTGGGACATCGGCATCATATTTAATTTC
1 GTGTAAGACCATGTCTGGGAAATCGGCATCATATATAATTTC
*
36217011 GTGTAAGACCCTGTCTGGGA
1 GTGTAAGACCATGTCTGGGA
36217031 CAGTGGTATC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 21 0.40
43 7 0.13
44 25 0.47
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGAAATCGGCATCATATATAATTTC
Found at i:36217026 original size:42 final size:43
Alignment explanation
Indices: 36216963--36217074 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
36216953 TGGACTTATG
36216963 ATTTACGTGTAAGACCATGTCTGGGACA-TCGGCATC-ATATTTA
1 ATTT-CGTGTAAGACCATGTCTGGGACAGT-GGCATCAATATTTA
* * *
36217006 ATTTCGTGTAAGACCCTGTCTGGGACAGTGGTATCAATATTTG
1 ATTTCGTGTAAGACCATGTCTGGGACAGTGGCATCAATATTTA
* * * *
36217049 ATTACATGTAAGACCACGTTTGGGAC
1 ATTTCGTGTAAGACCATGTCTGGGAC
36217075 TTGGCATTGT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
ATTTCGTGTAAGACCATGTCTGGGACAGTGGCATCAATATTTA
Found at i:36217060 original size:43 final size:42
Alignment explanation
Indices: 36216965--36217074 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
36216955 GACTTATGAT
36216965 TTACGTGTAAGACCATGTCTGGGACATCGGCATCATATTTAA
1 TTACGTGTAAGACCATGTCTGGGACATCGGCATCATATTTAA
* * * *
36217007 TTTCGTGTAAGACCCTGTCTGGGACAGT-GGTATCAATATTTGA
1 TTACGTGTAAGACCATGTCTGGGACA-TCGGCATC-ATATTTAA
* * *
36217050 TTACATGTAAGACCACGTTTGGGAC
1 TTACGTGTAAGACCATGTCTGGGAC
36217075 TTGGCATTGT
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 29 0.51
43 28 0.49
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACATCGGCATCATATTTAA
Found at i:36221913 original size:20 final size:20
Alignment explanation
Indices: 36221890--36221947 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
36221880 TATAACCTAC
36221890 AGTTCATCTGTATAAACAGT
1 AGTTCATCTGTATAAACAGT
*
36221910 AGTTCATCAGTAGT-AACAGT
1 AGTTCATCTGTA-TAAACAGT
*
36221930 AATTCAT-TCGTATAAACA
1 AGTTCATCT-GTATAAACA
36221948 CATATTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.33
Consensus pattern (20 bp):
AGTTCATCTGTATAAACAGT
Found at i:36222173 original size:26 final size:26
Alignment explanation
Indices: 36222109--36222179 Score: 69
Period size: 26 Copynumber: 2.9 Consensus size: 26
36222099 CTCCGCCTAT
* *
36222109 TGAGCTGA-AAA-GGTAAGCTCTTTC
1 TGAGCTGATAAACGGTAAGCTCCTCC
* *
36222133 -GAGC-CATAATCGGTAAGCTCCTCC
1 TGAGCTGATAAACGGTAAGCTCCTCC
*
36222157 TGAGCTGATAAACGGTATGCTCC
1 TGAGCTGATAAACGGTAAGCTCC
36222180 GAATAGCTGA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
22 1 0.03
23 6 0.17
24 11 0.31
25 4 0.11
26 14 0.39
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (26 bp):
TGAGCTGATAAACGGTAAGCTCCTCC
Found at i:36222415 original size:23 final size:24
Alignment explanation
Indices: 36222384--36222429 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
36222374 TCAATTTACG
*
36222384 AAATCATATATGTACAATTCAATC
1 AAATCATATATATACAATTCAATC
*
36222408 AAAT-ATATATATACATTTCAAT
1 AAATCATATATATACAATTCAAT
36222430 ACTCAATTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.48, C:0.13, G:0.02, T:0.37
Consensus pattern (24 bp):
AAATCATATATATACAATTCAATC
Found at i:36225667 original size:46 final size:48
Alignment explanation
Indices: 36225596--36225722 Score: 161
Period size: 46 Copynumber: 2.7 Consensus size: 48
36225586 TGATATGTGT
*
36225596 GCTAGTGTAAGACATGTCTGAGACATGCATCAACCAC-AG-TA-TGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCACGAGATATTGA-A
* ** *
36225642 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCTTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCACGAGATATTGAA
* *
36225690 GCCAGTGTAAGACATGTTTGGGACATGCATCAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAA
36225723 TATTGAGATG
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 33 0.47
47 2 0.03
48 33 0.47
49 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACCACGAGATATTGAA
Found at i:36225791 original size:94 final size:94
Alignment explanation
Indices: 36225596--36225791 Score: 209
Period size: 94 Copynumber: 2.1 Consensus size: 94
36225586 TGATATGTGT
* *
36225596 GCTAGTGTAAGACATGTCTGAGACATGCATCAACCACAGTATGAGAGCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGAGACATGCATCAACCACAGTATGAGAGCTAGTGTAAGAAATATCT
* **
36225661 GGGACATGCATCAGCTTCGAGATATTTAA
66 GGGACAGGCATCAGCTTCGAGATATACAA
* * * * * *
36225690 GCCAGTGTAAGACATGTTTGGGACATGCATCAA-TATTGAG-ATGAGAGTTAGTGTAAGAAATAT
1 GCTAGTGTAAGACATGTCTGAGACATGCATCAACCA--CAGTATGAGAGCTAGTGTAAGAAATAT
* * **
36225753 TTGGGACAGGCATCGGCCTT-TTGATATACAA
64 CTGGGACAGGCATCAG-CTTCGAGATATACAA
36225784 GCTAGTGT
1 GCTAGTGT
36225792 TTGACCTATC
Statistics
Matches: 83, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
93 1 0.01
94 77 0.93
95 5 0.06
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGAGACATGCATCAACCACAGTATGAGAGCTAGTGTAAGAAATATCT
GGGACAGGCATCAGCTTCGAGATATACAA
Found at i:36232972 original size:48 final size:48
Alignment explanation
Indices: 36232916--36233011 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
36232906 TTCTACCAAA
*
36232916 CCGAAGCACTTTCTTCTATGGAGACACTTTCAAAAACACTTTGTCACT
1 CCGAAGCACTTTCTTCCATGGAGACACTTTCAAAAACACTTTGTCACT
36232964 CCGAAGCACTTTCTTCCATGGAGACACTTTCAAAAACACTTTGTCACT
1 CCGAAGCACTTTCTTCCATGGAGACACTTTCAAAAACACTTTGTCACT
36233012 GACCTCAAAC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.30
Consensus pattern (48 bp):
CCGAAGCACTTTCTTCCATGGAGACACTTTCAAAAACACTTTGTCACT
Found at i:36236704 original size:55 final size:55
Alignment explanation
Indices: 36236620--36236731 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
36236610 ACTCAACCTT
*
36236620 ACAAATTCCTGCTCGTATTCTGTGACAAACATACGGCCTTGTTTAAGCTCGAGAA
1 ACAAATTCCTGCTCGTATTCTGTGACAAACATACGACCTTGTTTAAGCTCGAGAA
36236675 ACAAATTCCTGCTCGTATTCTGTGACAAACATACGACCTTGTTTAAGCTCGAGAA
1 ACAAATTCCTGCTCGTATTCTGTGACAAACATACGACCTTGTTTAAGCTCGAGAA
36236730 AC
1 AC
36236732 TCTTTGCATT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (55 bp):
ACAAATTCCTGCTCGTATTCTGTGACAAACATACGACCTTGTTTAAGCTCGAGAA
Found at i:36237555 original size:13 final size:14
Alignment explanation
Indices: 36237529--36237557 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
36237519 TACTAATAAA
36237529 ATTCATTCATTCAC
1 ATTCATTCATTCAC
36237543 ATTCATT-ATTCAC
1 ATTCATTCATTCAC
36237556 AT
1 AT
36237558 AAAATAGAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.31, C:0.24, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTCATTCATTCAC
Found at i:36244681 original size:15 final size:15
Alignment explanation
Indices: 36244661--36244729 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
36244651 GTATCTTGGG
36244661 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
36244676 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
36244691 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
36244706 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
36244721 TTTCTTTAT
1 TTTCTTTAT
36244730 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:36244730 original size:30 final size:30
Alignment explanation
Indices: 36244652--36244739 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
36244642 CATAGTATCG
* * * *
36244652 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
36244682 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
36244712 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
36244740 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:36248898 original size:18 final size:18
Alignment explanation
Indices: 36248875--36248910 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
36248865 GAGATGGCTG
36248875 GAGTTGATAAAAGACTAT
1 GAGTTGATAAAAGACTAT
*
36248893 GAGTTGATAATAGACTAT
1 GAGTTGATAAAAGACTAT
36248911 CACCCGAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.31
Consensus pattern (18 bp):
GAGTTGATAAAAGACTAT
Found at i:36251787 original size:46 final size:47
Alignment explanation
Indices: 36251720--36251885 Score: 151
Period size: 48 Copynumber: 3.5 Consensus size: 47
36251710 TATTTGTGCT
36251720 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-CGTA-TGAGAGAC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACACGTATTGA-AGAC
* * * * *
36251766 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGGTATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ACGTATTGAAGAC
* * * **
36251814 AGTGTAAGACATGTCAT-GGACATGTATCAGCCTCGCGATATACAAG-C
1 AGTGTAAGACATGTC-TGGGACATGCATCAGCCACACG-TATTGAAGAC
* *
36251861 TAGTGTAAGACCTGTCCGGGACATG
1 -AGTGTAAGACATGTCTGGGACATG
36251886 GGGTCAGCTT
Statistics
Matches: 100, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
46 32 0.32
47 2 0.02
48 63 0.63
49 3 0.03
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACACGTATTGAAGAC
Found at i:36263692 original size:20 final size:20
Alignment explanation
Indices: 36263669--36263725 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
36263659 ATAACCTGTG
* *
36263669 GTTCATCTGTATAAATAGTA
1 GTTCATCAGTATAAACAGTA
36263689 GTTCATCAGTA-ATAACAGTA
1 GTTCATCAGTATA-AACAGTA
* *
36263709 ATTCATCCGTATAAACA
1 GTTCATCAGTATAAACA
36263726 CATATTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 29 0.94
21 1 0.03
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (20 bp):
GTTCATCAGTATAAACAGTA
Found at i:36265751 original size:27 final size:27
Alignment explanation
Indices: 36265716--36265775 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
36265706 ACATAGGGGT
*
36265716 AAAACAGTCACCTCAACATAAAAGGGC
1 AAAACAGTCACCTCAACACAAAAGGGC
* * * *
36265743 AAAATAGTCATCTTACCACAAAAGGGC
1 AAAACAGTCACCTCAACACAAAAGGGC
36265770 AAAACA
1 AAAACA
36265776 ATCATTTTAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.50, C:0.23, G:0.13, T:0.13
Consensus pattern (27 bp):
AAAACAGTCACCTCAACACAAAAGGGC
Found at i:36265780 original size:27 final size:27
Alignment explanation
Indices: 36265737--36266003 Score: 320
Period size: 27 Copynumber: 9.9 Consensus size: 27
36265727 CTCAACATAA
* * * *
36265737 AAGGGCAAAATAGTCATCTTACCACAA
1 AAGGGCAAAACAATCATTTTACCACAT
*
36265764 AAGGGCAAAACAATCATTTTACCTCAT
1 AAGGGCAAAACAATCATTTTACCACAT
*
36265791 AAAGGG-AAAACAATCATTTTACCTCAT
1 -AAGGGCAAAACAATCATTTTACCACAT
* * * ** *
36265818 ATGGGCAAAATAGTCATTTTACCTTAA
1 AAGGGCAAAACAATCATTTTACCACAT
* *
36265845 AAAGGCAAAACAATCATTTTACCACGT
1 AAGGGCAAAACAATCATTTTACCACAT
*
36265872 AAGGGCAAAACAATCATTTTACCATAT
1 AAGGGCAAAACAATCATTTTACCACAT
* * *
36265899 AAGGGTAAAACAGTCATTTTACCATAT
1 AAGGGCAAAACAATCATTTTACCACAT
*
36265926 AAGGGCAAAACAGTCATTTTACCACAT
1 AAGGGCAAAACAATCATTTTACCACAT
*
36265953 AAGGGCAAAACAATCATTTTCCCACAT
1 AAGGGCAAAACAATCATTTTACCACAT
* *
36265980 AAGGGCAAAATAGTCATTTTACCA
1 AAGGGCAAAACAATCATTTTACCA
36266004 ATTAGGGGTC
Statistics
Matches: 208, Mismatches: 30, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 4 0.02
27 199 0.96
28 5 0.02
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (27 bp):
AAGGGCAAAACAATCATTTTACCACAT
Found at i:36265852 original size:81 final size:81
Alignment explanation
Indices: 36265737--36266003 Score: 385
Period size: 81 Copynumber: 3.3 Consensus size: 81
36265727 CTCAACATAA
* * *
36265737 AAGGGCAAAATAGTCATCTTACCACAAAAGGGCAAAACAATCATTTTACCTCATAAAGGG-AAAA
1 AAGGGCAAAATAGTCATTTTACCATAAAAGGGCAAAACAATCATTTTACCACAT-AAGGGCAAAA
36265801 CAATCATTTTACCTCAT
65 CAATCATTTTACCTCAT
* * * *
36265818 ATGGGCAAAATAGTCATTTTACCTTAAAAAGGCAAAACAATCATTTTACCACGTAAGGGCAAAAC
1 AAGGGCAAAATAGTCATTTTACCATAAAAGGGCAAAACAATCATTTTACCACATAAGGGCAAAAC
36265883 AATCATTTTACCAT-AT
66 AATCATTTTACC-TCAT
* * * *
36265899 AAGGGTAAAACAGTCATTTTACCATATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAAC
1 AAGGGCAAAATAGTCATTTTACCATAAAAGGGCAAAACAATCATTTTACCACATAAGGGCAAAAC
* *
36265964 AATCATTTTCCCACAT
66 AATCATTTTACCTCAT
36265980 AAGGGCAAAATAGTCATTTTACCA
1 AAGGGCAAAATAGTCATTTTACCA
36266004 ATTAGGGGTC
Statistics
Matches: 164, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
80 5 0.03
81 158 0.96
82 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (81 bp):
AAGGGCAAAATAGTCATTTTACCATAAAAGGGCAAAACAATCATTTTACCACATAAGGGCAAAAC
AATCATTTTACCTCAT
Found at i:36267792 original size:16 final size:16
Alignment explanation
Indices: 36267771--36267803 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36267761 TCTTTTTTTA
36267771 TATTA-TATATTATTAT
1 TATTATTAT-TTATTAT
36267787 TATTATTATTTATTAT
1 TATTATTATTTATTAT
36267803 T
1 T
36267804 TACCTGTACG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTATTATTTATTAT
Found at i:36267860 original size:21 final size:20
Alignment explanation
Indices: 36267822--36267860 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36267812 CGGGCCCGTA
*
36267822 AGCCTATTGGGCCAAATTTT
1 AGCCTATCGGGCCAAATTTT
*
36267842 AGCCTATCGAGGCCCAATT
1 AGCCTATCG-GGCCAAATT
36267861 ACCGAAGTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (20 bp):
AGCCTATCGGGCCAAATTTT
Found at i:36273785 original size:13 final size:13
Alignment explanation
Indices: 36273767--36273797 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
36273757 TCGTCCCCTG
36273767 CGGCCCGATCATA
1 CGGCCCGATCATA
36273780 CGGCCCGATCATA
1 CGGCCCGATCATA
36273793 CGGCC
1 CGGCC
36273798 TATTATCATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.42, G:0.26, T:0.13
Consensus pattern (13 bp):
CGGCCCGATCATA
Found at i:36278093 original size:21 final size:21
Alignment explanation
Indices: 36278046--36278095 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
36278036 AAATCACTTT
*
36278046 ATAAAAC-TTATTAATCTAGC
1 ATAAAACATTAATAATCTAGC
* * *
36278066 TTCAAACATTAATAATCTATC
1 ATAAAACATTAATAATCTAGC
36278087 ATAAAACAT
1 ATAAAACAT
36278096 CGAAACAATC
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (21 bp):
ATAAAACATTAATAATCTAGC
Found at i:36285447 original size:53 final size:54
Alignment explanation
Indices: 36285380--36285586 Score: 211
Period size: 53 Copynumber: 3.8 Consensus size: 54
36285370 TTCCTTTTTA
* * *
36285380 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
36285433 AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
36285487 TAGTTTATCAATGCTATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
36285542 AACTTACCAATGCCATGCCTT-AGCATAGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGA-CATGGTCTTACATGGTATCCTT
36285587 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 28, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
53 48 0.39
54 35 0.28
55 40 0.33
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:36289629 original size:42 final size:42
Alignment explanation
Indices: 36289468--36289631 Score: 163
Period size: 42 Copynumber: 3.9 Consensus size: 42
36289458 TACCATACCA
* ** *
36289468 ATGCCATATCCCAGATATGGTCTTACATGTCA-TCTCGTATCG
1 ATGCCATATCCCAGATACGGTCTTACACAT-AGTCTCATATCG
* * * * *
36289510 ATGCCAATAGCCCAGCTACAGTCTTACACAAAATCTC-TCATCG
1 ATGCC-ATATCCCAGATACGGTCTTACACATAGTCTCAT-ATCG
*
36289553 ATGCCATATCCCAGATACGATCTTACACGA-AGTCTCATATCG
1 ATGCCATATCCCAGATACGGTCTTACAC-ATAGTCTCATATCG
* *
36289595 ATGCCATATCCTAGATATGGTCTTACACATAGTCTCA
1 ATGCCATATCCCAGATACGGTCTTACACATAGTCTCA
36289632 GTAACCCTAA
Statistics
Matches: 101, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 67 0.66
43 33 0.33
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATACGGTCTTACACATAGTCTCATATCG
Found at i:36291942 original size:21 final size:21
Alignment explanation
Indices: 36291903--36291942 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
36291893 ACTTGTATAT
* *
36291903 CTATCAACAAGCATTAAAAAC
1 CTATCAACAAACATCAAAAAC
*
36291924 CTATCATCAAACATCAAAA
1 CTATCAACAAACATCAAAA
36291943 TACATGCTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.25, G:0.03, T:0.20
Consensus pattern (21 bp):
CTATCAACAAACATCAAAAAC
Found at i:36293149 original size:48 final size:48
Alignment explanation
Indices: 36293094--36293642 Score: 963
Period size: 48 Copynumber: 11.4 Consensus size: 48
36293084 GCCGAATCAC
*
36293094 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
36293142 TAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
36293190 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
36293238 TAGCCATTTGGCTTTACCACACATACATATCTCATACATATTTCACAG
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
36293286 TAGTCATTCGGCTTTACCACACATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
36293334 TAGCCTTTCGGCTTTACCACAGATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
36293382 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAG
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
36293430 TAGTCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
36293478 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
36293526 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
36293574 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
36293622 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
36293643 CACATATATA
Statistics
Matches: 478, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 478 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:36297079 original size:29 final size:29
Alignment explanation
Indices: 36297021--36297153 Score: 137
Period size: 29 Copynumber: 4.7 Consensus size: 29
36297011 CTGACTGATT
* * *
36297021 TCGCACACATAGCG-CTCGATTATAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
*
36297049 TCGCAGACATAGTGCCTCAATTAAAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
* * *
36297078 TCGCACACATAGTGCCCCAATTACCA-ATC
1 TCGCACACATAGTGCCTCAATTA-AAGAAC
* * *
36297107 TCGCACACATAGCG-CTCGATTGAAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
*
36297135 TTGCACACATAGTGCCTCA
1 TCGCACACATAGTGCCTCA
36297154 TAATTCCAGC
Statistics
Matches: 84, Mismatches: 17, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
27 1 0.01
28 31 0.37
29 51 0.61
30 1 0.01
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTAAAGAAC
Found at i:36297244 original size:40 final size:40
Alignment explanation
Indices: 36297159--36297389 Score: 340
Period size: 40 Copynumber: 5.8 Consensus size: 40
36297149 CCTCATAATT
* * * * *
36297159 CCAGCACGAATGC-CTTTGAGG-TTTAGCCCAGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGACATAACA
* * *
36297198 CTAGCACGAATACTTTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
*
36297238 CCAGCACGAATGCTCTTCGGGACTTAGCCCAGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
**
36297278 CCAATACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
36297318 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
36297358 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
36297390 CTATATAACT
Statistics
Matches: 173, Mismatches: 17, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 13 0.08
40 160 0.92
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
Found at i:36298160 original size:48 final size:48
Alignment explanation
Indices: 36298107--36298415 Score: 512
Period size: 48 Copynumber: 6.4 Consensus size: 48
36298097 GCCGAATCAC
*
36298107 TAGCCATTCGGCTTTACCACATATACATTTCTCATACATATTT-AGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA-CAT
* * * *
36298155 TAGCCATTCGGCTTTACCACGTACACATATCTCCTACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * * *
36298203 TAGCCATTTGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
36298251 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
36298299 TAGTCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
36298347 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
36298395 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
36298416 CACATATATA
Statistics
Matches: 245, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
48 244 1.00
49 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:36304336 original size:27 final size:27
Alignment explanation
Indices: 36304022--36304338 Score: 370
Period size: 27 Copynumber: 11.7 Consensus size: 27
36304012 TTAGTTTACC
* * *
36304022 AAATTACCAAAATA-CCCTCGATTAGCA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * * * *
36304049 AAATTACC-AAATGCCCTTGATTAGAA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36304075 AAATTACCAAAAATACCCTTGGTTTGTA
1 AAATTACC-AAAATACCCCTGGTTTGTA
*
36304103 AAATTACAAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
36304130 AAATTACTAAAATACCCCTTGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36304157 AAATTACCAAAATACCCCTTGTTTGCT-
1 AAATTACCAAAATACCCCTGGTTTG-TA
* *
36304184 AAATTACCAAAATCCCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
36304211 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
36304238 AAATTACCAAAATACCCTTGATTAGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
36304265 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
36304292 AAATTACCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36304319 AAATTACTAAAATACCCCTG
1 AAATTACCAAAATACCCCTG
36304339 TAAGGTAGAA
Statistics
Matches: 257, Mismatches: 28, Indels: 10
0.87 0.09 0.03
Matches are distributed among these distances:
26 20 0.08
27 215 0.84
28 22 0.09
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:36304350 original size:27 final size:27
Alignment explanation
Indices: 36304320--36304443 Score: 178
Period size: 27 Copynumber: 4.6 Consensus size: 27
36304310 TAATTTGTAA
* *
36304320 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTATAAGGTAG
* *
36304347 AATTAAC-GAAATACCCTTATAGGGTAG
1 AATT-ACTGAAATACCCCTATAAGGTAG
36304374 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTATAAGGTAG
*
36304401 AATTACTTAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTATAAGGTAG
*
36304428 AATTACTGAGATACCC
1 AATTACTGAAATACCC
36304444 TCATCAACCA
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 2 0.02
27 82 0.95
28 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTATAAGGTAG
Found at i:36304351 original size:54 final size:54
Alignment explanation
Indices: 36304076--36304419 Score: 261
Period size: 54 Copynumber: 6.4 Consensus size: 54
36304066 TGATTAGAAA
* ** * ** *
36304076 AATTACCAAAAATACCCTTGGTTTGTAAAATTACAAAAATACCCCTGGT-TTGTAA
1 AATTACC-AAAATACCCCTAATTTGTAAAATTACCAAAATACCCCT-GTAAGGTAG
* ** ** *
36304131 AATTACTAAAATACCCCTTGTTTGTAAAATTACCAAAATACCCCTTGTTTGCTA-
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCC-TGTAAGGTAG
* * *
36304185 AATTACCAAAATCCCCCTAGTTTGTAAAATTACCAAAATACCCC--TAATTTGT-G
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGTAA--GGTAG
* * * ** *
36304238 AAATTACCAAAATACCCTTGATTAGTAAAATTACCAAAATACCCCTGGT-TTGTAA
1 -AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCT-GTAAGGTAG
*
36304293 AATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCCTGTAAGGTAG
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGTAAGGTAG
* * * ** * ** *
36304347 AATTAACGAAATA-CCCTTATAGGGTAGAATTACTGAAATACCCCTATAAGGTAG
1 AATTACCAAAATACCCCTAAT-TTGTAAAATTACCAAAATACCCCTGTAAGGTAG
**
36304401 AATTACTTAAATACCCCTA
1 AATTACCAAAATACCCCTA
36304420 TAAGGTAGAA
Statistics
Matches: 237, Mismatches: 39, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
51 1 0.00
53 9 0.04
54 212 0.89
55 14 0.06
57 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGTAAGGTAG
Found at i:36304378 original size:81 final size:80
Alignment explanation
Indices: 36304023--36304433 Score: 310
Period size: 81 Copynumber: 5.1 Consensus size: 80
36304013 TAGTTTACCA
* * * * * * * *
36304023 AATTACCAAAATACCCTCGATTAGCAAAATTACC-AAATGCCCTTGATTAGAAAAATTACCAAAA
1 AATTACCAAAATACCCT-TATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACC-AAA
* ** *
36304087 ATACCCTTGGT-TTGTAA
64 ATACCCCT-GTAAGGTAG
* ** * **
36304104 AATTACAAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTTGTTTGTAAAATTACCAAAA
1 AATTACCAAAATA-CCCTTATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAA
** *
36304169 TACCCCTTGTTTGCTA-
65 TACCCC-TGTAAGGTAG
* * *
36304185 AATTACCAAAATCCCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACCAAAA
1 AATTACCAAAATACCCTTA-TTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAA
* * *
36304250 TACCCTTGATTA-GTAA
65 TACCCCTG-TAAGGTAG
** *
36304266 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAA
1 AATTACCAAAATA-CCCTTATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAA
36304331 TACCCCTGTAAGGTAG
65 TACCCCTGTAAGGTAG
* * ** * ** ** * **
36304347 AATTAACGAAATACCCTTATAGGGTAGAATTACTGAAATACCCCT-ATAAGGTAGAATTACTTAA
1 AATTACCAAAATACCCTTAT-TTGTAAAATTACCAAAATACCCCTAAT-TTGTAAAATTACCAAA
*
36304411 ATACCCCTATAAGGTAG
64 ATACCCCTGTAAGGTAG
36304428 AATTAC
1 AATTAC
36304434 TGAGATACCC
Statistics
Matches: 269, Mismatches: 50, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
80 16 0.06
81 222 0.83
82 31 0.12
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (80 bp):
AATTACCAAAATACCCTTATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAAT
ACCCCTGTAAGGTAG
Found at i:36314282 original size:79 final size:80
Alignment explanation
Indices: 36314119--36314343 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 80
36314109 TTGAATGATG
* * * * *
36314119 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
36314181 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
*
36314199 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
36314261 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
** * *
36314278 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
36314343 G
66 G
36314344 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 16
0.82 0.07 0.10
Matches are distributed among these distances:
78 1 0.01
79 68 0.54
80 46 0.37
81 10 0.08
82 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:36314307 original size:40 final size:40
Alignment explanation
Indices: 36314119--36314343 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
36314109 TTGAATGATG
* * * *
36314119 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
36314159 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
36314199 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
36314239 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36314278 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36314319 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36314344 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 122 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36314335 original size:119 final size:120
Alignment explanation
Indices: 36314119--36314343 Score: 289
Period size: 119 Copynumber: 1.9 Consensus size: 120
36314109 TTGAATGATG
*
36314119 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
36314184 GTGCGAGATACTAATTCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAATACCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
36314239 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
36314301 TTGTGCGAGTTACT-ATAACCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGATACTAAT-ACCGGACTAAGAT-CCGAAGGCATTTG
36314344 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
118 4 0.04
119 69 0.76
120 18 0.20
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36314365 original size:79 final size:78
Alignment explanation
Indices: 36314126--36314376 Score: 253
Period size: 79 Copynumber: 3.2 Consensus size: 78
36314116 ATGTCCGGGC
* * * *
36314126 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
*
36314189 AGATACTAATTCCGGAC
64 AGATACTAA-TCCGG-T
*
36314206 TAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
36314268 AGTTACTAAATCCGGGT
64 AGATACT-AATCC-GGT
* * **
36314285 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
36314350 -TAGCTATATCCGGT
66 ATA-CTA-ATCCGGT
* *
36314364 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
36314377 TACGTGATTT
Statistics
Matches: 146, Mismatches: 14, Indels: 23
0.80 0.08 0.13
Matches are distributed among these distances:
78 1 0.01
79 81 0.55
80 56 0.38
81 8 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
ATACTAATCCGGT
Found at i:36318651 original size:42 final size:42
Alignment explanation
Indices: 36318490--36318653 Score: 172
Period size: 42 Copynumber: 3.9 Consensus size: 42
36318480 TACCATACCA
* ** *
36318490 ATGCCATATCCCAGATATGGTCTTACATGTCA-TCTCGTATCG
1 ATGCCATATCCCAGATACGGTCTTACACAT-AGTCTCATATCG
* * * *
36318532 ATGCCAATAACCCAGCTACGGTCTTACACAAAATCTC-TCATCG
1 ATGCC-ATATCCCAGATACGGTCTTACACATAGTCTCAT-ATCG
*
36318575 ACGCCATATCCCAGATACGGTCTTACACGA-AGTCTCATATCG
1 ATGCCATATCCCAGATACGGTCTTACAC-ATAGTCTCATATCG
* *
36318617 ATGCCATATCCTAGATATGGTCTTACACATAGTCTCA
1 ATGCCATATCCCAGATACGGTCTTACACATAGTCTCA
36318654 GTAACCCTAA
Statistics
Matches: 103, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 69 0.67
43 33 0.32
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGATACGGTCTTACACATAGTCTCATATCG
Found at i:36320896 original size:140 final size:141
Alignment explanation
Indices: 36320717--36321022 Score: 560
Period size: 140 Copynumber: 2.2 Consensus size: 141
36320707 CTAAACTTTC
* *
36320717 ACATTTTTACAATTTAGTCCTTATTACATAAAATCACAAATTCATGTAAATTTCAAGACACCCAT
1 ACATTTCT-CAATTTAATCCTTATTACATAAAATCACAAATTCATGTAAATTTCAAGACACCCAT
36320782 GCTTAGCCGAATTATGAATATGCCCCTAGCAGCCCATATTTTTCATTCATCTAATTTACATTTCA
65 GCTTAGCCGAATTATGAATATGCCCCTAGCAGCCCATATTTTTCATTCATCTAATTTACATTTCA
36320847 ACC-CAATTTTA
130 ACCACAATTTTA
*
36320858 ACATTTCTCAATTTAATCCTTATTACATAAAATCACAAATTCATGTAAATTTTAAGACACCCATG
1 ACATTTCTCAATTTAATCCTTATTACATAAAATCACAAATTCATGTAAATTTCAAGACACCCATG
*
36320923 CTTAGCCGAATTATGAATATGCCCCTAGCAGCCCATATTTTTCATTCATTTAATTTACATTTCAA
66 CTTAGCCGAATTATGAATATGCCCCTAGCAGCCCATATTTTTCATTCATCTAATTTACATTTCAA
36320988 CCACAATTTTA
131 CCACAATTTTA
36320999 ACATTTCTCAATTTAATCCTTATT
1 ACATTTCTCAATTTAATCCTTATT
36321023 TTACATTTTC
Statistics
Matches: 160, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
140 121 0.76
141 39 0.24
ACGTcount: A:0.34, C:0.22, G:0.06, T:0.38
Consensus pattern (141 bp):
ACATTTCTCAATTTAATCCTTATTACATAAAATCACAAATTCATGTAAATTTCAAGACACCCATG
CTTAGCCGAATTATGAATATGCCCCTAGCAGCCCATATTTTTCATTCATCTAATTTACATTTCAA
CCACAATTTTA
Found at i:36321087 original size:21 final size:20
Alignment explanation
Indices: 36321063--36321102 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
36321053 ACTTGTATAT
*
36321063 CTATCAACAAGCATTCAAAAC
1 CTATCAACAAACA-TCAAAAC
*
36321084 CTATCATCAAACATCAAAA
1 CTATCAACAAACATCAAAA
36321103 TACATGCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.50, C:0.28, G:0.03, T:0.20
Consensus pattern (20 bp):
CTATCAACAAACATCAAAAC
Found at i:36325294 original size:27 final size:27
Alignment explanation
Indices: 36325259--36325545 Score: 250
Period size: 27 Copynumber: 10.6 Consensus size: 27
36325249 TTAGTTTACC
* * *
36325259 AAATTACCAAAATACCGTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
36325286 AAATTACC-AAATGCCCTTGATTAGCA
1 AAATTACCAAAATACCCTCGATTTGTA
*
36325312 AAATTACCAAAAATACCC-CTGGTTTGTA
1 AAATTACC-AAAATACCCTC-GATTTGTA
* *
36325340 AAATTACTAAAATACCCCTTG-TTTGTA
1 AAATTACCAAAATA-CCCTCGATTTGTA
*
36325367 AAATTACCAAAATACCCCTTG-TTTGCT-
1 AAATTACCAAAATA-CCCTCGATTTG-TA
* *
36325394 AAATTACCAAAAT-CCCCCTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
36325421 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
36325448 AAATTACCAAAATACCCTCAATTAGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
36325475 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
*
36325502 AAATTACCAAAATACCC-CTAATTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
*
36325529 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
36325546 CTTTAAGGCA
Statistics
Matches: 223, Mismatches: 24, Indels: 26
0.82 0.09 0.10
Matches are distributed among these distances:
25 3 0.01
26 25 0.11
27 166 0.74
28 29 0.13
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:36325343 original size:54 final size:54
Alignment explanation
Indices: 36325259--36325547 Score: 325
Period size: 54 Copynumber: 5.4 Consensus size: 54
36325249 TTAGTTTACC
* * * * * * * *
36325259 AAATTACCAAAATA-CCGTCGATTAGCAAAATTACC-AAATGCCCTTGATTAGCA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCTTAATTTGTA
* *
36325312 AAATTACCAAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTT-GTTTGTA
1 AAATTACC-AAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCCTTAATTTGTA
* * * *
36325367 AAATTACCAAAATACCCCTTGTTTGCT-AAATTACCAAAATCCCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTG-TAAAATTACCAAAATACCCTTAATTTGTA
** * * *
36325421 AAATTACCAAAATACCCCTAATTTGTGAAATTACCAAAATACCCTCAATTAGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAATTTGTA
*
36325475 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAATTTGTA
*
36325529 AAATTACTAAAATACCCCT
1 AAATTACCAAAATACCCCT
36325548 TTAAGGCAGA
Statistics
Matches: 202, Mismatches: 27, Indels: 13
0.83 0.11 0.05
Matches are distributed among these distances:
53 13 0.06
54 164 0.81
55 20 0.10
56 5 0.02
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAATTTGTA
Found at i:36325406 original size:81 final size:81
Alignment explanation
Indices: 36325259--36325548 Score: 356
Period size: 81 Copynumber: 3.6 Consensus size: 81
36325249 TTAGTTTACC
* * * * * *
36325259 AAATTACCAAAATA-CCGTCGATTAGCAAAATTACC-AAAT-GCCCTTGATTAGCAAAATTACCA
1 AAATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTTG-TTAGCTAAATTACC-
36325321 AAAATACCCCTGGTTTGTA
63 AAAATACCCCTGGTTTGTA
* ** *
36325340 AAATTACTAAAATACCCCTTGTTTGTAAAATTACCAAAATACCCCTTGTTTGCTAAATTACCAAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTTGTTAGCTAAATTACCAAA
* *
36325405 ATCCCCCTAGTTTGTA
66 ATACCCCTGGTTTGTA
* **
36325421 AAATTACCAAAATACCCCTAATTTGTGAAATTACCAAAATA-CCCTCAATTAG-TAAAATTACCA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCT-TGTTAGCT-AAATTACCA
36325484 AAATACCCCTGGTTTGTA
64 AAATACCCCTGGTTTGTA
*
36325502 AAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCCTT
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTT
36325549 TAAGGCAGAA
Statistics
Matches: 180, Mismatches: 23, Indels: 12
0.84 0.11 0.06
Matches are distributed among these distances:
80 5 0.03
81 146 0.81
82 23 0.13
83 6 0.03
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTTGTTAGCTAAATTACCAAA
ATACCCCTGGTTTGTA
Found at i:36325546 original size:27 final size:27
Alignment explanation
Indices: 36325311--36325547 Score: 325
Period size: 27 Copynumber: 8.7 Consensus size: 27
36325301 CTTGATTAGC
*
36325311 AAAATTACCAAAAATACCCCTGGTTTGT
1 AAAATTACC-AAAATACCCCTAGTTTGT
* *
36325339 AAAATTACTAAAATACCCCTTGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
36325366 AAAATTACCAAAATACCCCTTGTTTGCT
1 AAAATTACCAAAATACCCCTAGTTTG-T
*
36325394 -AAATTACCAAAATCCCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
36325420 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * *
36325447 GAAATTACCAAAATA-CCCTCAATTAGT
1 AAAATTACCAAAATACCCCT-AGTTTGT
*
36325474 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
36325501 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
36325528 AAAATTACTAAAATACCCCT
1 AAAATTACCAAAATACCCCT
36325548 TTAAGGCAGA
Statistics
Matches: 189, Mismatches: 16, Indels: 9
0.88 0.07 0.04
Matches are distributed among these distances:
26 5 0.03
27 171 0.90
28 13 0.07
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:36325588 original size:81 final size:80
Alignment explanation
Indices: 36325337--36325672 Score: 247
Period size: 81 Copynumber: 4.2 Consensus size: 80
36325327 CCCCTGGTTT
* ** * ** * *
36325337 GTAAAATTACTAAAATACCCCTTGTTTGTAAAATTACCAAAATACCCCTTGTTTGCTA-AATTAC
1 GTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCCTT-TAAGGTAGAATTAA
* * **
36325401 CAAAAT-CCCCCTAGTTT
65 CGAAATACCCTC-A-TGG
* * * *
36325418 GTAAAATTACCAAAATACCCCTAATTTGTGAAATTACCAAAATACCCTCAATT-A-GTAAAATTA
1 GTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCC-C-TTTAAGGTAGAATTA
* *
36325481 CCAAAATACCC-C-TGG
64 ACGAAATACCCTCATGG
*
36325496 TTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCCTTTAAGGCAGAATT
1 ---GTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCCTTTAAGGTAGAATT
*
36325561 AACGAAATACCCTTATAGG
63 AACGAAATACCCTCAT-GG
* ** ** * * *
36325580 GTAGAATTACTGAAATACCCCT-ATAAGGTAGAATTACTTAAATACCCCTATAAGGTAGAATT-A
1 GTAAAATTACCAAAATACCCCTAAT-TTGTAAAATTACTAAAATACCCCTTTAAGGTAGAATTAA
*
36325643 CTGAGATACCCTCATGGG
65 C-GAAATACCCTCAT-GG
36325661 GTAAAATTACCA
1 GTAAAATTACCA
36325673 TTTTGCCCCT
Statistics
Matches: 209, Mismatches: 32, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
78 1 0.00
79 2 0.01
80 8 0.04
81 189 0.90
82 5 0.02
83 2 0.01
84 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (80 bp):
GTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCCTTTAAGGTAGAATTAAC
GAAATACCCTCATGG
Found at i:36325669 original size:54 final size:54
Alignment explanation
Indices: 36325499--36325670 Score: 152
Period size: 54 Copynumber: 3.2 Consensus size: 54
36325489 CCCCTGGTTT
** ** * * *
36325499 GTAAAATTACCAAAATACCCCTA-ATTTGTAAAATTACTAAAATACCCCTTTAAG
1 GTAAAATTACTTAAATACCCCTATA-AGGTAGAATTACTGAAATACCCCTATAAG
* * * * *
36325553 GCAGAATTAAC-GAAATACCCTTATAGGGTAGAATTACTGAAATACCCCTATAAG
1 GTAAAATT-ACTTAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTATAAG
* * **
36325607 GTAGAATTACTTAAATACCCCTATAAGGTAGAATTACTGAGATA-CCCTCATGGG
1 GTAAAATTACTTAAATACCCCTATAAGGTAGAATTACTGAAATACCCCT-ATAAG
36325661 GTAAAATTAC
1 GTAAAATTAC
36325671 CATTTTGCCC
Statistics
Matches: 97, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
53 6 0.06
54 88 0.91
55 3 0.03
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (54 bp):
GTAAAATTACTTAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTATAAG
Found at i:36325670 original size:27 final size:27
Alignment explanation
Indices: 36325530--36325653 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
36325520 TAATTTGTAA
* * *
36325530 AATTACTAAAATACCCCTTTAAGGCAG
1 AATTACTGAAATACCCCTATAAGGTAG
* *
36325557 AATTAAC-GAAATACCCTTATAGGGTAG
1 AATT-ACTGAAATACCCCTATAAGGTAG
36325584 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTATAAGGTAG
*
36325611 AATTACTTAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTATAAGGTAG
*
36325638 AATTACTGAGATACCC
1 AATTACTGAAATACCC
36325654 TCATGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 2 0.02
27 81 0.95
28 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTATAAGGTAG
Found at i:36326340 original size:27 final size:26
Alignment explanation
Indices: 36326296--36326347 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36326286 CTCGCTGCAA
*
36326296 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
36326323 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
36326348 GCAGCCTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:36329466 original size:42 final size:42
Alignment explanation
Indices: 36329306--36329468 Score: 170
Period size: 42 Copynumber: 3.9 Consensus size: 42
36329296 TACCATACCA
* * *
36329306 ATGCCATATCCCATATATGGTCTTACATATCA-TCTCATATCA
1 ATGCCATATCCCAAATATGGTCTTACACAT-AGTCTCATATCG
* * * * *
36329348 ATGCCAATAGCCCAAA-ATGTTCTTACACAAAATCTCACATCG
1 ATGCC-ATATCCCAAATATGGTCTTACACATAGTCTCATATCG
* * * *
36329390 ATGCCATATCCCAGATACGGTCTTACACGA-AGTCTCATTTGG
1 ATGCCATATCCCAAATATGGTCTTACAC-ATAGTCTCATATCG
36329432 ATGCCATATCCCAAATATGGTCTTACACATAGTCTCA
1 ATGCCATATCCCAAATATGGTCTTACACATAGTCTCA
36329469 GTAACCCTAA
Statistics
Matches: 99, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 10 0.10
42 80 0.81
43 9 0.09
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTACACATAGTCTCATATCG
Found at i:36337060 original size:42 final size:42
Alignment explanation
Indices: 36336899--36337062 Score: 172
Period size: 42 Copynumber: 3.9 Consensus size: 42
36336889 TACCATACCA
* ** *
36336899 ATGCCATATCCCAGATATGGTCTTACATGTTA-TCTCGTATCG
1 ATGCCATATCCCAGATACGGTCTTACA-CATAGTCTCATATCG
* * * * *
36336941 ATGCCAATAGCCCAGCTACGATCTTACACAAAATCTC-TCATCG
1 ATGCC-ATATCCCAGATACGGTCTTACACATAGTCTCAT-ATCG
36336984 ATGCCATATCCCAGATACGGTCTTACACGA-AGTCTCATATCG
1 ATGCCATATCCCAGATACGGTCTTACAC-ATAGTCTCATATCG
* *
36337026 ATGCCATATCCTAGATATGGTCTTACACATAGTCTCA
1 ATGCCATATCCCAGATACGGTCTTACACATAGTCTCA
36337063 GTAACCCTAA
Statistics
Matches: 103, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 69 0.67
43 33 0.32
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATACGGTCTTACACATAGTCTCATATCG
Found at i:36339374 original size:20 final size:21
Alignment explanation
Indices: 36339333--36339375 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
36339323 AAACTTGTAT
*
36339333 ATCTATCAACAAGCATTCAAA
1 ATCTATCAACAAACATTCAAA
*
36339354 ATCTATCATCAAACA-TCAAA
1 ATCTATCAACAAACATTCAAA
36339374 AT
1 AT
36339376 ACATGCTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.49, C:0.23, G:0.02, T:0.26
Consensus pattern (21 bp):
ATCTATCAACAAACATTCAAA
Found at i:36344657 original size:39 final size:39
Alignment explanation
Indices: 36344614--36344740 Score: 166
Period size: 39 Copynumber: 3.3 Consensus size: 39
36344604 GGTCTTTAAC
**
36344614 CCGGATATTTTTCCAGCACGTAGCCTGCAGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCAGACCTCAAGT
* * * *
36344653 CCGGATATATTTCTAGCATATAGCCTGCAGATCTC-ATT
1 CCGGATATTTTTCCAGCATATAGCCTGCAGACCTCAAGT
* *
36344691 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCAGACCTCAAGT
*
36344730 CCGAATATTTT
1 CCGGATATTTT
36344741 CAATCTCATA
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
38 33 0.45
39 41 0.55
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCAGACCTCAAGT
Found at i:36344741 original size:38 final size:38
Alignment explanation
Indices: 36344614--36344741 Score: 159
Period size: 38 Copynumber: 3.3 Consensus size: 38
36344604 GGTCTTTAAC
** *
36344614 CCGGATATTTTTCCAGCACGTAGCCTGCAGACCTCAAGT
1 CCGGATA-TTTTCCAGCATATAGCCTGCAGACCTCATGT
* *
36344653 CCGGATATATTTCTAGCATATAGCCTGCAGATCTCAT-T
1 CCGGATAT-TTTCCAGCATATAGCCTGCAGACCTCATGT
*
36344691 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATA-TTTTCCAGCATATAGCCTGCAGACCTCATGT
*
36344730 CCGAATATTTTC
1 CCGGATATTTTC
36344742 AATCTCATAC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 39 0.51
39 38 0.49
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.31
Consensus pattern (38 bp):
CCGGATATTTTCCAGCATATAGCCTGCAGACCTCATGT
Found at i:36350380 original size:40 final size:39
Alignment explanation
Indices: 36350336--36350440 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
36350326 AGTGACCATA
*
36350336 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
36350376 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
36350414 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
36350441 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36350397 original size:39 final size:40
Alignment explanation
Indices: 36350299--36350440 Score: 141
Period size: 40 Copynumber: 3.6 Consensus size: 40
36350289 AATGATGTCT
* * * *
36350299 GGGCTAAGTCCCAAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACC
* *
36350339 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACC
*
36350379 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
*
36350418 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
36350441 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
39 34 0.39
40 42 0.48
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
Found at i:36350447 original size:40 final size:39
Alignment explanation
Indices: 36350349--36350440 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
36350339 GGACTAAGAT
* *
36350349 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGC
*
36350388 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-C
36350428 CCGAAGGCATTTG
1 CCGAAGGCATTTG
36350441 AACGAGTAGC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
38 2 0.04
39 32 0.67
40 14 0.29
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGC
Found at i:36350734 original size:47 final size:47
Alignment explanation
Indices: 36350665--36350973 Score: 519
Period size: 47 Copynumber: 6.6 Consensus size: 47
36350655 AAGGGTTGGT
36350665 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36350712 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36350759 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36350806 AATGTGAAAGTGCATTTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36350853 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
36350900 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
36350947 GATGTGAATGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
36350974 TCCCGAAGGG
Statistics
Matches: 247, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 247 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:36357960 original size:40 final size:40
Alignment explanation
Indices: 36357916--36358009 Score: 125
Period size: 40 Copynumber: 2.4 Consensus size: 40
36357906 CGATATCTTG
* *
36357916 CACACTAAGTGTCGTACATAGCCGAAGCTATCTCAAATCA
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCA
* * * *
36357956 CACACTAAGTGCCATATATAGCCGGAGCTATGTCAAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCA
*
36357996 CAAACTAAGTGCCA
1 CACACTAAGTGCCA
36358010 CAAATAGCTG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCA
Found at i:36362510 original size:56 final size:58
Alignment explanation
Indices: 36362423--36362563 Score: 153
Period size: 56 Copynumber: 2.5 Consensus size: 58
36362413 CATATAACAA
* *** * *
36362423 GATTACCAGTCCAGGCTAAATCCTTTTTGTAAAATATGCTAGA-AGAGCTCAGT-T-AG
1 GATTATCAGTCCAGGCTAAATCCTAACTGTAAAATACGCTAGAGAGAGATCA-TATCAG
* * * * *
36362479 GATTATTAGTCCAGGCTAAATCCTAACTGTAACATACGCTCGAGAGGGATTATATCAG
1 GATTATCAGTCCAGGCTAAATCCTAACTGTAAAATACGCTAGAGAGAGATCATATCAG
36362537 GATTATCAGTCCAGGCTAAATCCTAAC
1 GATTATCAGTCCAGGCTAAATCCTAAC
36362564 AACAACAGTG
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
56 36 0.51
57 6 0.09
58 28 0.40
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (58 bp):
GATTATCAGTCCAGGCTAAATCCTAACTGTAAAATACGCTAGAGAGAGATCATATCAG
Found at i:36367261 original size:46 final size:46
Alignment explanation
Indices: 36367202--36367369 Score: 182
Period size: 46 Copynumber: 3.6 Consensus size: 46
36367192 ATAACCGTGC
36367202 CGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAGGT
* * * *
36367248 CGATGCATGTCCCAAACATGTCTTACACTAGCACT-TGTCTCGATGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTATGTCTCGAGGT
* * * * *
36367294 TGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAT-T-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ATGTCTCGAGGT
36367342 CGATGCATGT-CCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
36367370 AGCTCACACA
Statistics
Matches: 101, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
45 9 0.09
46 52 0.51
47 19 0.19
48 18 0.18
49 1 0.01
50 2 0.02
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAGGT
Found at i:36367314 original size:93 final size:92
Alignment explanation
Indices: 36367203--36367372 Score: 238
Period size: 93 Copynumber: 1.8 Consensus size: 92
36367193 TAACCGTGCC
* *
36367203 GATGCATGTCCCAGACAT-GTCTTACACTGGCT-T-ATGTCTCGAGGTCGATGCATGTCCCAAAC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT-T-GAGGCCGATGCATGT-CCAAAC
36367265 ATGTCTTACACTAGCACTTGTCTCGATGTT
63 ATGTCTTACACTAGCACTTGTCTCGATGTT
* * *
36367295 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATATTGTGGCCGATGCATGTCCAGACAT
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCATATTGAGGCCGATGCATGTCCAAACAT
36367360 GTCTTACACTAGC
65 GTCTTACACTAGC
36367373 TCACACAAGT
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
92 4 0.06
93 34 0.49
94 26 0.38
95 2 0.03
96 3 0.04
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTGAGGCCGATGCATGTCCAAACATG
TCTTACACTAGCACTTGTCTCGATGTT
Found at i:36369081 original size:32 final size:32
Alignment explanation
Indices: 36369045--36369109 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
36369035 TGTCAATTTG
36369045 AGGTGGCCTTCAAGCAGTCACGAATTACTCTA
1 AGGTGGCCTTCAAGCAGTCACGAATTACTCTA
*
36369077 AGGTGGCCTTCAAGCAGTCACGTATTACTCTA
1 AGGTGGCCTTCAAGCAGTCACGAATTACTCTA
36369109 A
1 A
36369110 CTTTCTCTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (32 bp):
AGGTGGCCTTCAAGCAGTCACGAATTACTCTA
Found at i:36375600 original size:42 final size:42
Alignment explanation
Indices: 36375541--36375703 Score: 152
Period size: 42 Copynumber: 3.9 Consensus size: 42
36375531 TAAGGTTACC
*
36375541 GAGACTATGTGTAAGACCATATCTAGGATATGGCATC-ATTAT
1 GAGACTTTGTGTAAGACCATATCTAGGATATGGCATCGA-TAT
*
36375583 GAGACTTTGTGTAAGACCATATCTGGGATATGGCATCGATAT
1 GAGACTTTGTGTAAGACCATATCTAGGATATGGCATCGATAT
* * * * * * * *
36375625 GAGATTTTATGTAAGGCCATAGCTGGGCTATTGGTATCGATAC
1 GAGACTTTGTGTAAGACCATATCTAGGATA-TGGCATCGATAT
***
36375668 GAGA-TCCCATGTAAGACCATATCT-GGAATATGGCAT
1 GAGACT-TTGTGTAAGACCATATCTAGG-ATATGGCAT
36375704 TGATGTGGTA
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
42 71 0.70
43 31 0.30
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
GAGACTTTGTGTAAGACCATATCTAGGATATGGCATCGATAT
Found at i:36399243 original size:25 final size:25
Alignment explanation
Indices: 36399200--36399261 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
36399190 TTGGGTGTTT
* *
36399200 TCAGTAAGT-CTATCTATAGTAGTC
1 TCAGTATGTACTACCTATAGTAGTC
*
36399224 TCAGTATGTACTACCTATAGTAGTT
1 TCAGTATGTACTACCTATAGTAGTC
* *
36399249 TCAGGATATACTA
1 TCAGTATGTACTA
36399262 TCAATAACAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 8 0.25
25 24 0.75
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (25 bp):
TCAGTATGTACTACCTATAGTAGTC
Found at i:36404419 original size:19 final size:20
Alignment explanation
Indices: 36404369--36404416 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
36404359 TAAATTTTTG
36404369 TTATAAAATATTTTAATGATT
1 TTATAAAAT-TTTTAATGATT
**
36404390 TTATCTAATTTTTAAT-ATT
1 TTATAAAATTTTTAATGATT
36404409 CTTATAAA
1 -TTATAAA
36404417 TTTAAGTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 3 0.14
20 12 0.55
21 7 0.32
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (20 bp):
TTATAAAATTTTTAATGATT
Found at i:36406977 original size:18 final size:18
Alignment explanation
Indices: 36406954--36406988 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
36406944 CGTCACTATC
36406954 ACATATACATT-ATCATAA
1 ACATATA-ATTCATCATAA
36406972 ACATATAATTCATCATA
1 ACATATAATTCATCATA
36406989 GCCAAATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (18 bp):
ACATATAATTCATCATAA
Found at i:36407716 original size:12 final size:12
Alignment explanation
Indices: 36407699--36407724 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36407689 ATGGAGAAAT
36407699 TTTGTCTTTTAG
1 TTTGTCTTTTAG
36407711 TTTGTCTTTTAG
1 TTTGTCTTTTAG
36407723 TT
1 TT
36407725 CATTTAACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.15, T:0.69
Consensus pattern (12 bp):
TTTGTCTTTTAG
Found at i:36419573 original size:40 final size:40
Alignment explanation
Indices: 36419430--36419616 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
36419420 TTCGAATGAT
* * *
36419430 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAA
* *
36419471 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAA
* * *
36419511 TTTCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAA
* *
36419550 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-A
*
36419591 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
36419617 AGCGAGTAGC
Statistics
Matches: 125, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 33 0.26
40 63 0.50
41 28 0.22
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAA
Found at i:36419647 original size:79 final size:80
Alignment explanation
Indices: 36419432--36419649 Score: 241
Period size: 79 Copynumber: 2.7 Consensus size: 80
36419422 CGAATGATAT
* *
36419432 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACTATATCCGGACTAAGA-TCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTAG-CTATATCCGGATTAA-ATTCCGAAGGCAT
*
36419495 TTGTGCGAGTTACTAATT
63 TTGTGCGAGTTACTAATA
* * * * * *
36419513 TCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGATTAAATTCCGAAGGCATTT
36419576 GTGCGAGTTACT-ATAA
65 GTGCGAGTTACTAAT-A
* * *
36419592 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGTAGCTATATCC-GATTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGATTAAATTCCGAAGG
36419650 TATGTGATTC
Statistics
Matches: 113, Mismatches: 18, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
78 2 0.02
79 62 0.55
80 40 0.35
81 9 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGATTAAATTCCGAAGGCATTTG
TGCGAGTTACTAATA
Found at i:36426738 original size:47 final size:47
Alignment explanation
Indices: 36426672--36426781 Score: 193
Period size: 47 Copynumber: 2.3 Consensus size: 47
36426662 ATGTCCTTCG
** *
36426672 GGCCTTATCACATATATACACTTTCACATTCATCACATTTGCCATTC
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
36426719 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
36426766 GGCCTTATCACATATA
1 GGCCTTATCACATATA
36426782 CATATCTTGT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 60 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
Found at i:36428647 original size:13 final size:13
Alignment explanation
Indices: 36428629--36428653 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36428619 TACTAAATTT
36428629 TCATGGATTCAAA
1 TCATGGATTCAAA
36428642 TCATGGATTCAA
1 TCATGGATTCAA
36428654 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:36430879 original size:58 final size:54
Alignment explanation
Indices: 36430817--36430927 Score: 132
Period size: 58 Copynumber: 2.0 Consensus size: 54
36430807 CTCATAGTAC
* *
36430817 TCGGTTAAAGAAATTCACACACACAGTGCCTCAATTATCGATCTCACCCACATAGTGT
1 TCGGTTAAAGAAATTCACACACACAATGCCTCAA--ATC-AT-TCACACACATAGTGT
* ** *
36430875 TCGGTTAAAGGAATTTGCAGACACAATGCCTCAAATCATTCACACACATAGTG
1 TCGGTTAAAGAAATTCACACACACAATGCCTCAAATCATTCACACACATAGTG
36430928 CCCTTATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 13 0.28
55 2 0.04
56 3 0.06
58 29 0.62
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.25
Consensus pattern (54 bp):
TCGGTTAAAGAAATTCACACACACAATGCCTCAAATCATTCACACACATAGTGT
Found at i:36431124 original size:43 final size:43
Alignment explanation
Indices: 36431077--36431160 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
36431067 GCATTAAGCT
* * *
36431077 TGCTAGGCATGAAAG-CCTGAATACATATCACCAGCACGAATCC
1 TGCTAGGCACG-AAGCCCCGAATACACATCACCAGCACGAATCC
*
36431120 TGCTAGGCACGAAGCCCCGAATACACATCACCGGCACGAAT
1 TGCTAGGCACGAAGCCCCGAATACACATCACCAGCACGAAT
36431161 GCTCTTCGGG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 3 0.08
43 33 0.92
ACGTcount: A:0.33, C:0.31, G:0.20, T:0.15
Consensus pattern (43 bp):
TGCTAGGCACGAAGCCCCGAATACACATCACCAGCACGAATCC
Found at i:36431227 original size:40 final size:40
Alignment explanation
Indices: 36431148--36431388 Score: 302
Period size: 40 Copynumber: 6.0 Consensus size: 40
36431138 GAATACACAT
* * *
36431148 CACCGGCACGAATGCTCTTCGGGACTTAGCTCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAA
* * * *
36431188 CACTAGCATGAATGCTCTTCGGGTCTTAACCCGGGTATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAA
* *
36431228 CACCAGCACGAATGCTCTTCGGGACTTAACTCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAA
* * ** *
36431268 CACTAGCACGAATGCTCTTCGAGTTTTAACCCGGGTATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAA
*
36431308 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAG
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAA
* * * * *
36431348 CATCGGCACAAATGCCCTTCGGGACTTAACCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAA
36431388 C
1 C
36431389 TCACTAAACT
Statistics
Matches: 169, Mismatches: 32, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 169 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAA
Found at i:36431286 original size:80 final size:80
Alignment explanation
Indices: 36431148--36431388 Score: 340
Period size: 80 Copynumber: 3.0 Consensus size: 80
36431138 GAATACACAT
* * *
36431148 CACCGGCACGAATGCTCTTCGGGACTTAGCTCGGATATAACACTAGCATGAATGCTCTTCGGGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACTCGGATATAACACTAGCACGAATGCTCTTCGGGTC
36431213 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
* * *
36431228 CACCAGCACGAATGCTCTTCGGGACTTAACTCAGATATAACACTAGCACGAATGCTCTTCGAGTT
1 CACCAGCACGAATGCTCTTCGGGACTTAACTCGGATATAACACTAGCACGAATGCTCTTCGGGTC
36431293 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
* * * * * *
36431308 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAGCA-TCGGCACAAATGCCCTTCGGGA
1 CACCAGCACGAATGCTCTTCGGGACTTAACTCGGATATAACACT-AGCACGAATGCTCTTCGGGT
* *
36431372 CTTAACCCAGATATAA
65 CTTAACCCGGGTATAA
36431388 C
1 C
36431389 TCACTAAACT
Statistics
Matches: 143, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
79 1 0.01
80 142 0.99
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
CACCAGCACGAATGCTCTTCGGGACTTAACTCGGATATAACACTAGCACGAATGCTCTTCGGGTC
TTAACCCGGGTATAA
Found at i:36433311 original size:47 final size:47
Alignment explanation
Indices: 36433237--36433390 Score: 272
Period size: 47 Copynumber: 3.3 Consensus size: 47
36433227 TCCTTCGGGA
*
36433237 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
36433284 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36433331 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36433378 CTTATCACATATA
1 CTTATCACATATA
36433391 CATATCTTGT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36435259 original size:13 final size:13
Alignment explanation
Indices: 36435241--36435265 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36435231 TACTAAATTT
36435241 TCATGGATTCAAA
1 TCATGGATTCAAA
36435254 TCATGGATTCAA
1 TCATGGATTCAA
36435266 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:36437807 original size:39 final size:40
Alignment explanation
Indices: 36437702--36437909 Score: 244
Period size: 40 Copynumber: 5.2 Consensus size: 40
36437692 TATTCGAATG
* * *
36437702 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
* *
36437743 ATATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
36437783 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
36437822 AAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
36437862 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
36437902 ATATCCGG
1 ATATCCGG
36437910 TTAAATTCCG
Statistics
Matches: 143, Mismatches: 18, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
39 36 0.25
40 79 0.55
41 27 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:36437842 original size:79 final size:80
Alignment explanation
Indices: 36437702--36437897 Score: 254
Period size: 79 Copynumber: 2.5 Consensus size: 80
36437692 TATTCGAATG
* * *
36437702 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCTGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAATCTGGACTAAGATCCGAAGGC
36437767 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * **
36437783 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCTGGGTTAAG-TCCCGAAGG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCTGGACTAAGAT-CCGAAGG
36437845 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
* * *
36437862 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
36437898 AGCTATATCC
Statistics
Matches: 100, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 51 0.51
80 36 0.36
81 12 0.12
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCTGGACTAAGATCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:36437912 original size:79 final size:78
Alignment explanation
Indices: 36437706--36437923 Score: 228
Period size: 79 Copynumber: 2.7 Consensus size: 78
36437696 CGAATGATAT
* * * *
36437706 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACTATATCTGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
36437770 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* * *
36437787 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCTGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATC-CGGTTAAGT-CCGAAGGCATTT
36437850 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* * *
36437866 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
36437924 TATGTGATTC
Statistics
Matches: 116, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
78 3 0.03
79 58 0.50
80 45 0.39
81 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:36439919 original size:27 final size:26
Alignment explanation
Indices: 36439836--36439943 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 26
36439826 AGCATGGCTG
*
36439836 CCAGAACAGATATTGTGACAGAGTCC-
1 CCAGAACAGATATTGTGGCAGAG-CCA
*
36439862 CCAAATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
36439889 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* * *
36439916 CCAGAATTAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAGAGCCA
36439943 C
1 C
36439944 TTAACAGAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 13 0.18
27 53 0.75
28 5 0.07
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:36440127 original size:22 final size:22
Alignment explanation
Indices: 36440102--36440159 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
36440092 TAAATACGTT
36440102 TGGCACAAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * *
36440124 TGGCACAAAGCCATATTTAGGA
1 TGGCACAAAGCCATAGTCAAGA
*
36440146 TGGCACAGAGCCAT
1 TGGCACAAAGCCAT
36440160 TGATAATGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.17
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:36440203 original size:20 final size:20
Alignment explanation
Indices: 36440178--36440223 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
36440168 GGTCTATAAT
36440178 CGGCACGAAGCCCACAGTAA
1 CGGCACGAAGCCCACAGTAA
36440198 CGGCACGAAGCCCACAGTAA
1 CGGCACGAAGCCCACAGTAA
36440218 CGGCAC
1 CGGCAC
36440224 ACAACCTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.33, C:0.37, G:0.26, T:0.04
Consensus pattern (20 bp):
CGGCACGAAGCCCACAGTAA
Found at i:36441080 original size:27 final size:27
Alignment explanation
Indices: 36440507--36441073 Score: 794
Period size: 27 Copynumber: 21.0 Consensus size: 27
36440497 GGGGAAAAAT
* * *
36440507 GGTAATTTTACCCCACAAGGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
* *
36440534 GGTAATTCCACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36440561 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36440588 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36440615 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
36440642 GGTAATTCTACCTTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36440669 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36440696 GGTAATTTTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36440723 AGTAATTCTACCCTACAGGGGTAATTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
36440750 GATAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
36440777 AGTTATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36440804 GGTAATTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36440831 GGTAATTCTACCCTAGAGGGGTATGTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36440858 GTTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36440885 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36440912 GGTAATTCTACCTTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36440939 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36440966 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
36440993 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36441020 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36441047 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
36441074 AATAATTTGG
Statistics
Matches: 473, Mismatches: 66, Indels: 2
0.87 0.12 0.00
Matches are distributed among these distances:
26 2 0.00
27 471 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:36455870 original size:46 final size:44
Alignment explanation
Indices: 36455760--36455936 Score: 150
Period size: 46 Copynumber: 3.9 Consensus size: 44
36455750 CCAGCTCTCA
*
36455760 CACATC-CGT-GCCGATGCATGTCCCAGG-CATGTCTTACACTAG
1 CACATCTCGTAGCCGATGCATGTCCC-GGACATGTCTTACACTGG
** *
36455802 CACATCTCGTAGTAGATGCATGTCCCGGACATGTCTTATACTGG
1 CACATCTCGTAGCCGATGCATGTCCCGGACATGTCTTACACTGG
* * *
36455846 TTGACATCTCG-AGGCCGATGCATGTCCCAGACATATCTTACACTGG
1 --CACATCTCGTA-GCCGATGCATGTCCCGGACATGTCTTACACTGG
*
36455892 CAC-TCGTC-TCAATGCCGATGCCATGTCCCAGACATGGTCTTACAC
1 CACATC-TCGT--A-GCCGATG-CATGTCCCGGACAT-GTCTTACAC
36455937 AGGCTTTCAT
Statistics
Matches: 110, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 6 0.05
43 7 0.06
44 30 0.27
45 1 0.01
46 44 0.40
47 14 0.13
48 8 0.07
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.26
Consensus pattern (44 bp):
CACATCTCGTAGCCGATGCATGTCCCGGACATGTCTTACACTGG
Found at i:36458578 original size:30 final size:30
Alignment explanation
Indices: 36458544--36458600 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
36458534 ATCCATAACG
* *
36458544 AAGAAATCCAGAATATA-AAAATCCAATATA
1 AAGAAATCCAAAACA-AGAAAATCCAATATA
36458574 AAGAAATCCAAAACAAGAAAATCCAAT
1 AAGAAATCCAAAACAAGAAAATCCAAT
36458601 CACGATACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.61, C:0.16, G:0.07, T:0.16
Consensus pattern (30 bp):
AAGAAATCCAAAACAAGAAAATCCAATATA
Found at i:36458580 original size:15 final size:15
Alignment explanation
Indices: 36458544--36458599 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
36458534 ATCCATAACG
36458544 AAGAAATCCAGAATAT
1 AAGAAATCCA-AATAT
36458560 AA-AAATCC-AATAT
1 AAGAAATCCAAATAT
*
36458573 AAAGAAATCCAAA-AC
1 -AAGAAATCCAAATAT
36458588 AAGAAAATCCAA
1 AAG-AAATCCAA
36458600 TCACGATACC
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
13 5 0.14
14 5 0.14
15 21 0.60
16 4 0.11
ACGTcount: A:0.62, C:0.16, G:0.07, T:0.14
Consensus pattern (15 bp):
AAGAAATCCAAATAT
Found at i:36461173 original size:29 final size:29
Alignment explanation
Indices: 36461114--36461271 Score: 230
Period size: 29 Copynumber: 5.5 Consensus size: 29
36461104 ATAGTAAGTC
* *
36461114 CGCACACTTAGTG-TTATATAATAAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
36461142 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
36461171 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
36461200 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
36461229 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
36461258 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36461272 CAATCTCATG
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
28 13 0.11
29 104 0.87
30 3 0.03
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:36474093 original size:50 final size:50
Alignment explanation
Indices: 36473929--36474169 Score: 364
Period size: 48 Copynumber: 4.9 Consensus size: 50
36473919 TTGATGCATA
*
36473929 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
36473977 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATG
* *
36474029 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
36474079 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
36474127 AGATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
36474170 GTAGGCGGTG
Statistics
Matches: 177, Mismatches: 10, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
48 80 0.45
49 4 0.02
50 48 0.27
51 3 0.02
52 42 0.24
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.32
Consensus pattern (50 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:36474420 original size:37 final size:37
Alignment explanation
Indices: 36474319--36474427 Score: 200
Period size: 38 Copynumber: 2.9 Consensus size: 37
36474309 GGAAATATAT
*
36474319 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
36474356 TCCGGGTAAGACCACGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACC-CGATGACTACGTGTGGAGATTATG
36474394 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
36474428 TCATCTGAGC
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
37 34 0.49
38 36 0.51
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36475741 original size:40 final size:40
Alignment explanation
Indices: 36475684--36476082 Score: 564
Period size: 40 Copynumber: 10.0 Consensus size: 40
36475674 GAGAGTTATA
* *
36475684 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
36475724 TGTATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
36475764 TACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
36475804 TGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
36475844 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
36475884 TATATCCGGGCTAAGTCACGAAGAGCATTCATGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
36475924 TGTATCCGGGCTAAGTCCCGAAGAGCATTTGTCCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * * *
36475964 TATATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
36476004 TATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
36476044 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
36476083 ATGTGTATTC
Statistics
Matches: 314, Mismatches: 45, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 314 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:36476296 original size:25 final size:25
Alignment explanation
Indices: 36476246--36476296 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
36476236 TGTGTAACAA
* *
36476246 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
36476271 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
36476296 C
1 C
36476297 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:36479675 original size:50 final size:50
Alignment explanation
Indices: 36479511--36479751 Score: 373
Period size: 48 Copynumber: 4.9 Consensus size: 50
36479501 TTGATGCATA
*
36479511 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
36479559 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGAGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATG
* *
36479611 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
36479661 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
36479709 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
36479752 GTAGGCGATG
Statistics
Matches: 178, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
48 81 0.46
49 4 0.02
50 48 0.27
51 3 0.02
52 42 0.24
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (50 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:36480046 original size:37 final size:37
Alignment explanation
Indices: 36479901--36480045 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
36479891 GGAAATATAT
*
36479901 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
36479938 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
36479975 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
36480012 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
36480046 TCATCTGAGC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36483677 original size:43 final size:42
Alignment explanation
Indices: 36483530--36483686 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 42
36483520 TGTGAAATCG
* * *
36483530 TGTAAGACCACGTCTGGGACATTGCCATCGAT-TTTGTTTTTA-T
1 TGTAAGACCACGTCTGGGACAGTGGCATC-ATATTTG--ATTACT
* * * * *
36483573 GTGTAAGACCACGTCTGGGACATTCGCTTCATATTTGATTTCG
1 -TGTAAGACCACGTCTGGGACAGTGGCATCATATTTGATTACT
* *
36483616 TGTAAGGCC-CTGTTTGGGACAGTGGCATCAATATTTGATTACT
1 TGTAAGACCAC-GTCTGGGACAGTGGCATC-ATATTTGATTACT
*
36483659 TGTAAGACCACATCTGGGAC-GTTGGCAT
1 TGTAAGACCACGTCTGGGACAG-TGGCAT
36483687 TGTATGAGAT
Statistics
Matches: 91, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 34 0.37
44 31 0.34
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.34
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCATATTTGATTACT
Found at i:36488534 original size:46 final size:45
Alignment explanation
Indices: 36488478--36488653 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
36488468 TATTTGGGCA
*
36488478 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * * *
36488524 TCCGATCTCGTTGAGTTGAATCCGAGTTCGAGAGATGTAACTGGGCA-
1 TCCGATCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGCGAAG
* * *
36488571 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTGTGGATGCGAACG
1 TCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
36488617 CCCGATCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 TCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36488654 GCGGGTTTCA
Statistics
Matches: 101, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
44 4 0.04
45 1 0.01
46 61 0.60
47 30 0.30
48 1 0.01
49 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:36488631 original size:93 final size:93
Alignment explanation
Indices: 36488472--36488646 Score: 287
Period size: 93 Copynumber: 1.9 Consensus size: 93
36488462 CTAGGATATT
* *
36488472 TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGATCTCGTTG
1 TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGATCTCGTTG
*
36488537 AGTTGAATCCGAGTTCGAGAGATGTAAC
66 AGTTGAATCCAAGTTCGAGAGATGTAAC
* * *
36488565 TGGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTGTGGATGCGAACGCCCGATCTCGTTG
1 TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGATCTCGTTG
*
36488630 AGTTGAGTCCAAGTTCG
66 AGTTGAATCCAAGTTCG
36488647 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGATCTCGTTG
AGTTGAATCCAAGTTCGAGAGATGTAAC
Found at i:36494897 original size:93 final size:93
Alignment explanation
Indices: 36494784--36494955 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36494774 CGCCCATAAG
* *
36494784 CGAACTCGGACTCAACTCAACGAGGTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGGTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36494849 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
36494877 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGGTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36494942 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
36494956 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGGTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:36494952 original size:46 final size:46
Alignment explanation
Indices: 36494777--36494952 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
36494767 TGTAACCCGC
* * *
36494777 CCATAAGCGAACTCGGACTCAACTCAACGAGGTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
36494823 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
36494873 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
36494916 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
36494953 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:36503268 original size:21 final size:22
Alignment explanation
Indices: 36503244--36503288 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
36503234 AAAACGTAAA
*
36503244 AATCA-TTAAAACGGGGCTTGG
1 AATCACTTAAAACGGAGCTTGG
* *
36503265 AATCACTTAATATGGAGCTTGG
1 AATCACTTAAAACGGAGCTTGG
36503287 AA
1 AA
36503289 GCTTGAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (22 bp):
AATCACTTAAAACGGAGCTTGG
Found at i:36504359 original size:27 final size:26
Alignment explanation
Indices: 36504329--36504558 Score: 273
Period size: 27 Copynumber: 8.5 Consensus size: 26
36504319 ACCCCAAAAA
*
36504329 GGTATCTCTGTAATTCTACCCTACAGG
1 GGTATTTC-GTAATTCTACCCTACAGG
36504356 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTC-GTAATTCTACCCTACAGG
* * *
36504383 GGTATTTCGGTATTTCTACCTTACAAG
1 GGTATTTC-GTAATTCTACCCTACAGG
36504410 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCG-TAATTCTACCCTACAGG
*
36504437 GGTATTTTAGTAATTCTACCCTAC-GG
1 GGTA-TTTCGTAATTCTACCCTACAGG
*
36504463 GGTATTTCGATATTTCTACCCTACAGG
1 GGTATTTCG-TAATTCTACCCTACAGG
* *
36504490 GGTATTTCGATATTTCTACCCTACAAG
1 GGTATTTCG-TAATTCTACCCTACAGG
* * *
36504517 GGTATTTCGGCATTTCTACCCTACAAG
1 GGTATTTC-GTAATTCTACCCTACAGG
36504544 GGTATTTCGGTAATT
1 GGTATTTC-GTAATT
36504559 TTATAAATCG
Statistics
Matches: 182, Mismatches: 16, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
25 4 0.02
26 20 0.11
27 153 0.84
28 5 0.03
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (26 bp):
GGTATTTCGTAATTCTACCCTACAGG
Found at i:36504504 original size:107 final size:108
Alignment explanation
Indices: 36504338--36504550 Score: 340
Period size: 107 Copynumber: 2.0 Consensus size: 108
36504328 AGGTATCTCT
*
36504338 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACC
* * *
36504403 TTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTA
66 CTACAAGGGTATTTCGACAATTCTACCCTACAAGGGTATTTTA
*
36504446 GTAATTCTACCCTAC-GGGGTATTTC-GATATTTCTACCCTACAGGGGTATTTCGATATTTCTAC
1 GTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCGATATTTCTAC
* *
36504509 CCTACAAGGGTATTTCGGCATTTCTACCCTACAAGGGTATTT
65 CCTACAAGGGTATTTCGACAATTCTACCCTACAAGGGTATTT
36504551 CGGTAATTTT
Statistics
Matches: 97, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
106 1 0.01
107 81 0.84
108 15 0.15
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (108 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACC
CTACAAGGGTATTTCGACAATTCTACCCTACAAGGGTATTTTA
Found at i:36504572 original size:27 final size:27
Alignment explanation
Indices: 36504542--36504748 Score: 159
Period size: 27 Copynumber: 7.7 Consensus size: 27
36504532 CTACCCTACA
* *
36504542 AGGGTATTTCGGTAATTTTATAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
*** * * *
36504569 AGGGTAAAATGGTAATTCTATAAATCA
1 AGGGTATTTTGGTAATTTTACAAATCG
* * * *
36504596 ATGGTACTTTGGTAACTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
*** **
36504623 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* * *
36504650 AGGGTATTTTAGTAATTTCACAAAT-T
1 AGGGTATTTTGGTAATTTTACAAATCG
*
36504676 AGGGATATTTTGGTAATTTTACAAA-CT
1 AGGG-TATTTTGGTAATTTTACAAATCG
* *
36504703 AGGGGTATTTTGATAATTTTACAAA-CC
1 A-GGGTATTTTGGTAATTTTACAAATCG
36504730 AGGGGTATTTTGGTAATTT
1 A-GGGTATTTTGGTAATTT
36504749 GGTAAACTAA
Statistics
Matches: 144, Mismatches: 33, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
26 4 0.03
27 137 0.95
28 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:36504584 original size:134 final size:132
Alignment explanation
Indices: 36504342--36504588 Score: 327
Period size: 134 Copynumber: 1.8 Consensus size: 132
36504332 ATCTCTGTAA
* * *
36504342 TTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCTTAC
1 TTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGCATTTCTACCCTAC
* ***
36504407 AAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACGGGGTATTTCG
66 AAGGGTATTTCGATAATTCTA--CTAAAGGGGTAAAATAGTAATTCTACCCTACGGGGTATTTCG
36504472 ATAT
129 ATAT
*
36504476 TTCTACCCTACAGGGGTATTTC-GATATTTCTACCCTACAAGGGTATTTCGGCATTTCTACCCTA
1 TTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTACAAGGGTATTTCGGCATTTCTACCCTA
* * *
36504540 CAAGGGTATTTCGGTAATTTTA-TAAATCGAGGGTAAAATGGTAATTCTA
65 CAAGGGTATTTCGATAATTCTACTAAA--G-GGGTAAAATAGTAATTCTA
36504589 TAAATCAATG
Statistics
Matches: 98, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
131 3 0.03
133 2 0.02
134 93 0.95
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (132 bp):
TTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGCATTTCTACCCTAC
AAGGGTATTTCGATAATTCTACTAAAGGGGTAAAATAGTAATTCTACCCTACGGGGTATTTCGAT
AT
Found at i:36510142 original size:50 final size:50
Alignment explanation
Indices: 36510083--36510369 Score: 266
Period size: 50 Copynumber: 5.9 Consensus size: 50
36510073 TGCTAGGGAT
*
36510083 ATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGAG
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
* * *
36510133 ATATGAGAGCTAGTGTAAAACCATGTCTGGGACATGGCATGGGCCTTGAG
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
* * * * *
36510183 ACATGAGAGCTAATGTAAGACCATGTTTGGGACATGGCAT-GGGCT--TG
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
* * * * * *
36510230 ATATGTG-TC-AGTGTATGACCATGTCTGGGACATGGGATCGACCTCGAT
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
* * * * **
36510278 ATACGAGA-TTCAGTGTAAGACTATGTCTGGGACATGGCATC-GACT-TTG
1 ATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
* * * * **
36510326 ATGTGTGAGCCAGTGTAAGACCATATCCAGGACATGGCATCGGC
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
36510370 ACCTTACCCT
Statistics
Matches: 187, Mismatches: 42, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
45 25 0.13
46 4 0.02
47 6 0.03
48 36 0.19
49 7 0.04
50 109 0.58
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (50 bp):
ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
Found at i:36510295 original size:95 final size:99
Alignment explanation
Indices: 36510087--36510319 Score: 260
Period size: 95 Copynumber: 2.4 Consensus size: 99
36510077 AGGGATATAT
36510087 GAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGAGATATGAGAGCTAGTGTAAA
1 GAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC-AGATATGAGAGCTAGTGTAAA
* * * *
36510152 ACCATGTCTGGGACATGGCATGGGCCTTGAGACAT
65 ACCATGTCTGGGACATGGCATCGACCTCGAGACAC
* * * * * **
36510187 GAGAGCTAATGTAAGACCATGTTTGGGACATGGCAT-GGGCT-TGATATGTG-TC-AGTGTATGA
1 GAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAGATATGAGAGCTAGTGTAAAA
* * *
36510248 CCATGTCTGGGACATGGGATCGACCTCGATATAC
66 CCATGTCTGGGACATGGCATCGACCTCGAGACAC
* * *
36510282 GAGA-TTCAGTGTAAGACTATGTCTGGGACATGGCATCG
1 GAGAGCT-AGTGTAAGACCATGTTTGGGACATGGCATCG
36510320 ACTTTGATGT
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
94 1 0.01
95 64 0.57
96 2 0.02
97 7 0.06
99 4 0.04
100 35 0.31
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.25
Consensus pattern (99 bp):
GAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAGATATGAGAGCTAGTGTAAAA
CCATGTCTGGGACATGGCATCGACCTCGAGACAC
Found at i:36515826 original size:53 final size:54
Alignment explanation
Indices: 36515741--36515969 Score: 196
Period size: 53 Copynumber: 4.3 Consensus size: 54
36515731 ATTAGGGTGT
* * * *
36515741 AAGGATACCGA-GTAAGACCATGCCAAGGCATGGTATTGGTAAGTTTTACAAGGC
1 AAGGATACC-ATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTTATAAGGC
* * * * * **
36515795 AAGGA-AACATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTTTATAAGGC
* * * * * *
36515849 AAAGATCCCATGTAAGACCATGCCAAGGCATGACAATGGTGAG-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTTATAAGGC
* * * * * *
36515902 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTTTAAAAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTTATAAGGC
36515956 AAGG-TACCCATGTA
1 AAGGATA-CCATGTA
36515970 TCCTTAGTAT
Statistics
Matches: 136, Mismatches: 34, Indels: 10
0.76 0.19 0.06
Matches are distributed among these distances:
52 1 0.01
53 71 0.52
54 37 0.27
55 27 0.20
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTTATAAGGC
Found at i:36525269 original size:55 final size:53
Alignment explanation
Indices: 36525206--36525347 Score: 142
Period size: 53 Copynumber: 2.6 Consensus size: 53
36525196 GCAAGTAAAT
* *
36525206 CATGTAAGACCATGTCAAGACATGGC-ATTGATAAACTACTATAAGGCAAAGATCC
1 CATGTAAGACCATGTCAAGACATGGCAATAG-T-AACTAC-ATAAGGCAAAGATAC
* * * * * *
36525261 CATGTAAGACCATGCCAAGGCATGGCAATAGTGAGTTCATAAGGCAAGGATAC
1 CATGTAAGACCATGTCAAGACATGGCAATAGTAACTACATAAGGCAAAGATAC
** * *
36525314 CACATAAGACCATGTCAAGACATGGAAATGGTAA
1 CATGTAAGACCATGTCAAGACATGGCAATAGTAA
36525348 GTTTAAAAGG
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
53 40 0.56
54 3 0.04
55 25 0.35
56 3 0.04
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.20
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCAATAGTAACTACATAAGGCAAAGATAC
Found at i:36529547 original size:53 final size:52
Alignment explanation
Indices: 36529415--36529606 Score: 203
Period size: 53 Copynumber: 3.7 Consensus size: 52
36529405 ACACGAGTAC
* * * * *
36529415 CTTACCATTTCCATGACTTGTCATGGTCTTACATGGTA--T-CCTTTTGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTGCCTTATGAAA
*
36529464 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTGGCCTTATG-AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTA-CCT-GCCTTATGAAA
* * * * *
36529517 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACC--TGCCTTAT-GAAA
*
36529572 CTTAACAATGCCATGTCTTGACATGGTCTTACATG
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATG
36529607 ATTTCTTTGC
Statistics
Matches: 121, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
49 35 0.29
52 3 0.02
53 42 0.35
54 8 0.07
55 33 0.27
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (52 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTGCCTTATGAAA
Found at i:36529615 original size:55 final size:53
Alignment explanation
Indices: 36529415--36529669 Score: 202
Period size: 55 Copynumber: 4.8 Consensus size: 53
36529405 ACACGAGTAC
* * * * *
36529415 CTTACCATTTCCATGACTTGTCATGGTCTTACATGGTA----T-CCTTTTGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTATG-AA
* *
36529464 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCC-TGGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATGAA
* * * *
36529517 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTAT-G-AA
* * **
36529572 CTTAACAATGCCATGTCTTGACATGGTCTTACATGATTTCTTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTATG-AA
* * * *
36529625 CCTTACTAATTTCCATG-CATTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGTC-TTGACATGGTCTTACATGGTA-CCTT
36529670 AAACCCTAAT
Statistics
Matches: 166, Mismatches: 28, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
49 35 0.21
52 2 0.01
53 46 0.28
54 14 0.08
55 66 0.40
56 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTATGAA
Found at i:36529619 original size:108 final size:110
Alignment explanation
Indices: 36529462--36529659 Score: 267
Period size: 108 Copynumber: 1.8 Consensus size: 110
36529452 ATCCTTTTGA
* * *
36529462 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTGGCCTTATG-AA-CTCACCAA
1 AACTTAACAATGCCATGTCTTGACATGGTCTTACATGATAGCCTGGCCTTA-GAAACCTCACCAA
*
36529525 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCATTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
** * * * *
36529570 AACTTAACAATGCCATGTCTTGACATGGTCTTACATGATTTCTTTGCCTTAGAAACCTTACTAAT
1 AACTTAACAATGCCATGTCTTGACATGGTCTTACATGATAGCCTGGCCTTAGAAACCTCACCAAT
*
36529635 TTCCATGCATTGGCATGGTCTTACA
66 TGCCATGCATTGGCATGGTCTTACA
36529660 CGGTATCCTT
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 1 0.01
108 46 0.61
109 6 0.08
110 23 0.30
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTAACAATGCCATGTCTTGACATGGTCTTACATGATAGCCTGGCCTTAGAAACCTCACCAAT
TGCCATGCATTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:36542635 original size:46 final size:44
Alignment explanation
Indices: 36542458--36542671 Score: 133
Period size: 46 Copynumber: 4.6 Consensus size: 44
36542448 ATTGTGAGCT
* * * * * * *
36542458 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATAAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCTGCCTC--GAGACGTGCC
* * * * * *
36542504 AGTGTAAGACCTTGTCTGGGACATAACATCGGCATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCTGCCTCGAGAC--GTGCC
* *
36542552 AGTATAAGACATGTCTAGGACATGCATCTGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCTGCCTCGAGACGT--GCC
* * * * *
36542598 AGTGTAAGACGTGTCTGGGACATGTAT-TGGCTACGAGAGGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCTGCCT-CGAGACGTGCC
*
36542642 AGTGTAAGACCATGTCTGGGATATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
36542672 GACACAGATA
Statistics
Matches: 131, Mismatches: 27, Indels: 19
0.74 0.15 0.11
Matches are distributed among these distances:
44 13 0.10
45 16 0.12
46 58 0.44
47 25 0.19
48 19 0.15
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCTGCCTCGAGACGTGCC
Done.