Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 114 of 250
Found at i:36545986 original size:42 final size:42
Alignment explanation
Indices: 36545923--36546050 Score: 197
Period size: 42 Copynumber: 3.1 Consensus size: 42
36545913 CTAAGTTCGG
* * *
36545923 ATATAATACCCGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
36545965 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGG--AT
1 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
* *
36546005 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCTGGATAT
1 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
36546047 ATAT
1 ATAT
36546051 TATATCGAGA
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
40 38 0.48
42 41 0.52
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (42 bp):
ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
Found at i:36546050 original size:40 final size:40
Alignment explanation
Indices: 36545920--36546052 Score: 198
Period size: 40 Copynumber: 3.3 Consensus size: 40
36545910 ACTCTAAGTT
* *
36545920 CGGATATA-A-TACCCGCACTAAGCCTGCGGGATTTAACC
1 CGGATATATATTACCAGCACAAAGCCTGCGGGATTTAACC
36545958 CGGATATATATATTACCAGCACAAAGCCTGCGGGATTTAACC
1 CGG--ATATATATTACCAGCACAAAGCCTGCGGGATTTAACC
*
36546000 CGGATATATATTACCAGCACGAAGCCTGCGGGATTTAACC
1 CGGATATATATTACCAGCACAAAGCCTGCGGGATTTAACC
*
36546040 TGGATATATATTA
1 CGGATATATATTA
36546053 TATCGAGAGC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
38 3 0.03
40 53 0.61
41 1 0.01
42 30 0.34
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (40 bp):
CGGATATATATTACCAGCACAAAGCCTGCGGGATTTAACC
Found at i:36549781 original size:39 final size:39
Alignment explanation
Indices: 36549725--36549808 Score: 123
Period size: 39 Copynumber: 2.2 Consensus size: 39
36549715 TTCATGACGG
* *
36549725 TTTGGAGATGGCCTAGTTGTTAAGCTACCACAGAATTAT
1 TTTGGAGATGACCTAGTTGTTAAGATACCACAGAATTAT
* * *
36549764 TTTGGAGATGACTTAGTTGTTAGGATACCGCAGAATTAT
1 TTTGGAGATGACCTAGTTGTTAAGATACCACAGAATTAT
36549803 TTTGGA
1 TTTGGA
36549809 ATATGATAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.36
Consensus pattern (39 bp):
TTTGGAGATGACCTAGTTGTTAAGATACCACAGAATTAT
Found at i:36551555 original size:9 final size:9
Alignment explanation
Indices: 36551533--36551579 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
36551523 CTCCAACTTA
36551533 ATTTAAATTT
1 ATTTAAA-TT
36551543 ATTTAAATT
1 ATTTAAATT
*
36551552 ATTTAAAAT
1 ATTTAAATT
*
36551561 AATT-AATT
1 ATTTAAATT
*
36551569 TTTTAAATT
1 ATTTAAATT
36551578 AT
1 AT
36551580 AAATAAACTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
8 5 0.17
9 18 0.60
10 7 0.23
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
ATTTAAATT
Found at i:36551810 original size:7 final size:7
Alignment explanation
Indices: 36551800--36551825 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
36551790 TTTGAGGTTT
36551800 GGTTTTG
1 GGTTTTG
36551807 GGTTTTG
1 GGTTTTG
36551814 GGTTTTG
1 GGTTTTG
36551821 GGTTT
1 GGTTT
36551826 GGGATTCAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.42, T:0.58
Consensus pattern (7 bp):
GGTTTTG
Found at i:36551826 original size:13 final size:13
Alignment explanation
Indices: 36551790--36551828 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
36551780 AAATTTAAAG
36551790 TTTGAGGTTT-GGT
1 TTTG-GGTTTGGGT
36551803 TTTGGGTTTTGGGT
1 TTTGGG-TTTGGGT
36551817 TTTGGGTTTGGG
1 TTTGGGTTTGGG
36551829 ATTCAAGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 2 0.08
13 13 0.54
14 9 0.38
ACGTcount: A:0.03, C:0.00, G:0.44, T:0.54
Consensus pattern (13 bp):
TTTGGGTTTGGGT
Found at i:36555092 original size:24 final size:24
Alignment explanation
Indices: 36555059--36555112 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
36555049 AGCTGCCAAA
*
36555059 AAATGTAGGTTGTGGATAAACCACC
1 AAAT-TAGGTTGGGGATAAACCACC
*
36555084 AAATTAGGTTGGGGATAAACCACT
1 AAATTAGGTTGGGGATAAACCACC
36555108 AAATT
1 AAATT
36555113 TACAGATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (24 bp):
AAATTAGGTTGGGGATAAACCACC
Found at i:36556700 original size:13 final size:13
Alignment explanation
Indices: 36556682--36556708 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36556672 ACTTAAGGTG
36556682 CTTAACCATTAGA
1 CTTAACCATTAGA
36556695 CTTAACCATTAGA
1 CTTAACCATTAGA
36556708 C
1 C
36556709 CACTTCAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.26, G:0.07, T:0.30
Consensus pattern (13 bp):
CTTAACCATTAGA
Found at i:36559255 original size:95 final size:95
Alignment explanation
Indices: 36559126--36559430 Score: 377
Period size: 95 Copynumber: 3.3 Consensus size: 95
36559116 ACAACGTAAA
* * * * * *
36559126 CCCATGTTTAAA-TCCTGGCAAACTTCCCCATGTTTATTGTCCCGACAAAATTCATATGATGCCA
1 CCCATGTTTAAAGTCCTGGCAGACTACCCCATGTTTATTGTCCCGATAGACTTCATATGCTGCCA
*
36559190 TAGTCGAGCTATGGTCTTACACAATATAAC
66 TAATCGAGCTATGGTCTTACACAATATAAC
* * * * * * * *
36559220 CCCATGTTTAATGTCCTTGCAGGCTACCCCGTGTTTATTGTCCCAATGGACTCCATATGCTACCA
1 CCCATGTTTAAAGTCCTGGCAGACTACCCCATGTTTATTGTCCCGATAGACTTCATATGCTGCCA
* *
36559285 TAATCAAGATATGGTCTTACACAATATAAC
66 TAATCGAGCTATGGTCTTACACAATATAAC
* * * * *
36559315 TCCATGTTTAACGTCCTGGCAGACTATCCCATGCTCATTGTCCCGATAGACTTCATATGCTGCCA
1 CCCATGTTTAAAGTCCTGGCAGACTACCCCATGTTTATTGTCCCGATAGACTTCATATGCTGCCA
36559380 TAATCGAGCTATGGTCTTACAC---A-AAC
66 TAATCGAGCTATGGTCTTACACAATATAAC
36559406 CCCATGTTTAAAGTCCTGGCAGACT
1 CCCATGTTTAAAGTCCTGGCAGACT
36559431 TTAATAGTTT
Statistics
Matches: 177, Mismatches: 33, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
91 26 0.15
92 1 0.01
94 11 0.06
95 139 0.79
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.30
Consensus pattern (95 bp):
CCCATGTTTAAAGTCCTGGCAGACTACCCCATGTTTATTGTCCCGATAGACTTCATATGCTGCCA
TAATCGAGCTATGGTCTTACACAATATAAC
Found at i:36563015 original size:27 final size:28
Alignment explanation
Indices: 36562903--36563028 Score: 191
Period size: 28 Copynumber: 4.5 Consensus size: 28
36562893 CATGAGATTG
* * * *
36562903 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
36562932 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
36562960 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
36562988 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
36563015 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
36563029 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.26
28 50 0.54
29 18 0.20
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:36563025 original size:55 final size:57
Alignment explanation
Indices: 36562903--36563028 Score: 193
Period size: 55 Copynumber: 2.2 Consensus size: 57
36562893 CATGAGATTG
* *
36562903 GCACTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
* *
36562960 GCACTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
*
36563015 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
36563029 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
55 24 0.38
56 22 0.34
57 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
Found at i:36563039 original size:27 final size:27
Alignment explanation
Indices: 36562931--36563042 Score: 143
Period size: 28 Copynumber: 4.0 Consensus size: 27
36562921 TAAATTGTAC
*
36562931 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
36562959 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
36562987 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGATTATAT
* *
36563014 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTGAT-TATAT
36563043 TTTGAAATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
27 23 0.29
28 50 0.64
29 5 0.06
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGATTATAT
Found at i:36569520 original size:27 final size:28
Alignment explanation
Indices: 36569476--36569542 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
36569466 TTAATGTATG
36569476 TTTTAAATATGTCATAGT-TAGTACATAA
1 TTTT-AATATGTCATAGTCTAGTACATAA
* * * *
36569504 TTTTAATGTGTCTTAGTCTATTACATAT
1 TTTTAATATGTCATAGTCTAGTACATAA
36569532 TTTTAATATGT
1 TTTTAATATGT
36569543 TCTAACCGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 11 0.33
28 22 0.67
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.51
Consensus pattern (28 bp):
TTTTAATATGTCATAGTCTAGTACATAA
Found at i:36569811 original size:44 final size:44
Alignment explanation
Indices: 36569725--36569810 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 44
36569715 TGAAGACAAG
* *
36569725 CATGCATGGGACGACATTAAAGGAGCTACGGATTTCTCTTTTTC
1 CATGCATGGGACGACATGAAAGGAGCTACGGACTTCTCTTTTTC
* * * *
36569769 CATGCATGGGATGGCATGAAA-GAGCTGCTGACTTCTCTTTTT
1 CATGCATGGGACGACATGAAAGGAGCTACGGACTTCTCTTTTT
36569811 TATCAGGTGA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 18 0.50
44 18 0.50
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (44 bp):
CATGCATGGGACGACATGAAAGGAGCTACGGACTTCTCTTTTTC
Found at i:36579144 original size:38 final size:39
Alignment explanation
Indices: 36579083--36579248 Score: 158
Period size: 38 Copynumber: 4.3 Consensus size: 39
36579073 ATTTGATGTG
* *
36579083 TATCCGGGCTTAAAGACCCGTAGGCTCCATGCTGGAATTA
1 TATCCGGG-TTAAAGTCCCGTAGGCTCCATGCTGGTATTA
* * *
36579123 TATCCGGGTTAAA-TCCCGTAGGCTTCGTGCTGGTATTG
1 TATCCGGGTTAAAGTCCCGTAGGCTCCATGCTGGTATTA
* * *
36579161 TATCCGGGTTAAA-TCTCGCAGGC-CTAGTGCTGGTATTA
1 TATCCGGGTTAAAGTCCCGTAGGCTCCA-TGCTGGTATTA
* * * *
36579199 TATCTGAGTTTAAAGTCCCGTAGGCTTCATGCTGGTGTTA
1 TATCCG-GGTTAAAGTCCCGTAGGCTCCATGCTGGTATTA
* *
36579239 TGTTCGGGTT
1 TATCCGGGTT
36579249 TTATACCTCG
Statistics
Matches: 100, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
38 56 0.56
39 14 0.14
40 29 0.29
41 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.33
Consensus pattern (39 bp):
TATCCGGGTTAAAGTCCCGTAGGCTCCATGCTGGTATTA
Found at i:36581032 original size:29 final size:28
Alignment explanation
Indices: 36580999--36581099 Score: 87
Period size: 29 Copynumber: 3.5 Consensus size: 28
36580989 ATGATTAGAG
*
36580999 GCACTGTGTGTGCAAATTCTTTTAACCGA
1 GCACTATGTGTGCAAATTC-TTTAACCGA
** **
36581028 GCACTATGTGTGCGAAA-TCGGTAATTGA
1 GCACTATGTGTGC-AAATTCTTTAACCGA
* * * *
36581056 GGCACTGTGTGTGCGAGTTCTTCAACCGA
1 -GCACTATGTGTGCAAATTCTTTAACCGA
36581085 GCACTATGTGTGCAA
1 GCACTATGTGTGCAA
36581100 GATCGGTCAG
Statistics
Matches: 54, Mismatches: 15, Indels: 7
0.71 0.20 0.09
Matches are distributed among these distances:
28 19 0.35
29 32 0.59
30 3 0.06
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCAAATTCTTTAACCGA
Found at i:36581105 original size:57 final size:58
Alignment explanation
Indices: 36580996--36581106 Score: 172
Period size: 57 Copynumber: 1.9 Consensus size: 58
36580986 CGAATGATTA
*
36580996 GAGGCACTGTGTGTGCAAATTCTTTTAACCGAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCTTTCAACCGAGCACTATGTGTGCGAAATCGGTAATT
* *
36581054 GAGGCACTGTGTGTGCGAGTTC-TTCAACCGAGCACTATGTGTGC-AAGATCGGT
1 GAGGCACTGTGTGTGCAAATTCTTTCAACCGAGCACTATGTGTGCGAA-ATCGGT
36581107 CAGTGGGCAC
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
56 2 0.04
57 27 0.55
58 20 0.41
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCTTTCAACCGAGCACTATGTGTGCGAAATCGGTAATT
Found at i:36585495 original size:40 final size:39
Alignment explanation
Indices: 36585385--36585495 Score: 100
Period size: 40 Copynumber: 2.8 Consensus size: 39
36585375 ATTTGATGTG
*
36585385 TATCCGGGCTTAAAGACCCGTAGGCTTTA-TGCTAGAATTA
1 TATCCGGG-TTAAAGTCCCGTAGGC-TTAGTGCTAGAATTA
* * * * *
36585425 TATCCGGGTTATA-TCCCGCAGGCCTAGTGCTTGTATTA
1 TATCCGGGTTAAAGTCCCGTAGGCTTAGTGCTAGAATTA
* * *
36585463 TATCTGAGTTTAAAGTCCCGTAGGCTTCGTGCT
1 TATCCG-GGTTAAAGTCCCGTAGGCTTAGTGCT
36585496 GGTGTTATGT
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
37 2 0.04
38 22 0.39
39 9 0.16
40 23 0.41
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (39 bp):
TATCCGGGTTAAAGTCCCGTAGGCTTAGTGCTAGAATTA
Found at i:36590984 original size:109 final size:110
Alignment explanation
Indices: 36590789--36591010 Score: 270
Period size: 109 Copynumber: 2.0 Consensus size: 110
36590779 TGAGGGATGA
* * * * * *
36590789 GTGAAATGGAGAACAAATGTCTCTTTATTTATACTAGTGAGGAGCTCATTGAGTTTGATATTTTT
1 GTGAAATAGAGAACAAATGCCTCTCTATTTAGACTAGTGAGGAGCCCATTGAGTTTGATAATTTT
**
36590854 AGCATGATAATCCTTTATTTTTTCTCTCATGCACGGTT-AACCCTT
66 AGCATGATAATCC-CAATTTTTTCTCTCATGCACGGTTGAACCCTT
* * * *
36590899 GTGAAATAGAGAGCGAATGCCTCTCTATTT-GACTAGTGAGGAGCCCTTTGAGTTTGCTAATTTT
1 GTGAAATAGAGAACAAATGCCTCTCTATTTAGACTAGTGAGGAGCCCATTGAGTTTGATAATTTT
* * *
36590963 AGCATGATAATCCGC-ATTTTTTCTCTCATTCATGGTTGACCCCTT
66 AGCATGATAATCC-CAATTTTTTCTCTCATGCACGGTTGAACCCTT
36591008 GTG
1 GTG
36591011 TTAAGGAAGG
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
108 20 0.21
109 51 0.53
110 25 0.26
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (110 bp):
GTGAAATAGAGAACAAATGCCTCTCTATTTAGACTAGTGAGGAGCCCATTGAGTTTGATAATTTT
AGCATGATAATCCCAATTTTTTCTCTCATGCACGGTTGAACCCTT
Found at i:36598736 original size:48 final size:48
Alignment explanation
Indices: 36598600--36598725 Score: 207
Period size: 48 Copynumber: 2.6 Consensus size: 48
36598590 TGAGAGCTAA
*
36598600 TGTAAGACCATGTTTGGGACATGGCATCGGTGTTGATATGTGTGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCAGTGTTGATATGTGTGCCAG
* *
36598648 TGTAAGACCATGTCTAGGACATGGCATCAGTGTTGATATGTGTGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCAGTGTTGATATGTGTGCCAG
* *
36598696 TGTAAGACCATATTTGGGATATGGCATCAG
1 TGTAAGACCATGTTTGGGACATGGCATCAG
36598726 CATCGGTATG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGGACATGGCATCAGTGTTGATATGTGTGCCAG
Found at i:36598810 original size:42 final size:42
Alignment explanation
Indices: 36598745--36598942 Score: 164
Period size: 42 Copynumber: 4.6 Consensus size: 42
36598735 GTAATTTCAA
* * * * * ** **
36598745 GTAAGATCATATCTGTGATATGGCATTGATATGAGATTTTGT
1 GTAAGACCATGTCTGGGACATGGCATCGATATGAGACCTCAT
36598787 GTAAGACCATGTCTGGGACATGGCATCGATATGAGACCTCAT
1 GTAAGACCATGTCTGGGACATGGCATCGATATGAGACCTCAT
* * *
36598829 GTAAGACCATGTCAGGGACATGGCATCGGCACCGACATGAGACTTCAT
1 GTAAGACCATGTCTGGGACATGGCAT------CGATATGAGACCTCAT
* * * * *
36598877 ATAAGACCATATCTAGGATATGGCATTGATATGTAGACC-CAT
1 GTAAGACCATGTCTGGGACATGGCATCGATATG-AGACCTCAT
*
36598919 GTAAGACCATGTTTGGGACATGGC
1 GTAAGACCATGTCTGGGACATGGC
36598943 TTTGGCATTT
Statistics
Matches: 124, Mismatches: 25, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
42 85 0.69
43 4 0.03
48 35 0.28
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (42 bp):
GTAAGACCATGTCTGGGACATGGCATCGATATGAGACCTCAT
Found at i:36598900 original size:48 final size:48
Alignment explanation
Indices: 36598808--36598902 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
36598798 TCTGGGACAT
* * * *
36598808 GGCATCGATATGAGACCTCATGTAAGACCATGTCAGGGACATGGCATC
1 GGCACCGACATGAGACCTCATATAAGACCATATCAGGGACATGGCATC
* *
36598856 GGCACCGACATGAGACTTCATATAAGACCATATCTA-GGATATGGCAT
1 GGCACCGACATGAGACCTCATATAAGACCATATC-AGGGACATGGCAT
36598903 TGATATGTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
48 39 0.98
49 1 0.03
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (48 bp):
GGCACCGACATGAGACCTCATATAAGACCATATCAGGGACATGGCATC
Found at i:36603884 original size:32 final size:32
Alignment explanation
Indices: 36603843--36603908 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
36603833 TAATCCTGTT
36603843 ATATGATATGTGGCTCGAGAATGTTTTCCTTG
1 ATATGATATGTGGCTCGAGAATGTTTTCCTTG
* *
36603875 ATATGATATGTGGCTTGAGAGTGTTTTCCTTG
1 ATATGATATGTGGCTCGAGAATGTTTTCCTTG
36603907 AT
1 AT
36603909 TAAGTGCCCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.21, C:0.11, G:0.26, T:0.42
Consensus pattern (32 bp):
ATATGATATGTGGCTCGAGAATGTTTTCCTTG
Found at i:36614553 original size:21 final size:20
Alignment explanation
Indices: 36614524--36614563 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
36614514 TATGAGATTT
36614524 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
36614545 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
36614564 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:36614571 original size:20 final size:21
Alignment explanation
Indices: 36614529--36614571 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
36614519 GATTTAATGA
*
36614529 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
36614550 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
36614570 TT
1 TT
36614572 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:36640650 original size:40 final size:40
Alignment explanation
Indices: 36640567--36640783 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
36640557 AAGCCAAGTA
* * * *
36640567 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
36640605 CCTTCGGGACATAGACCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36640645 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36640685 CCTTCGGGACTTAGCCCGGATATAGTAAGTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
36640725 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
36640765 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
36640784 TTATCATCCG
Statistics
Matches: 160, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
38 12 0.08
39 18 0.11
40 130 0.81
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:36642985 original size:541 final size:542
Alignment explanation
Indices: 36641962--36643045 Score: 2055
Period size: 541 Copynumber: 2.0 Consensus size: 542
36641952 TTAGTCTAGC
36641962 AACCCACCATAGCCGATTTTCTCAAAGCTCTTCCCCCTTCTTCTCTTTCTCCCATTCGGCCAAGA
1 AACCCACCATAGCCGATTTTCTCAAAGCTCTTCCCCCTTCTTCTCTTTCTCCCATTCGGCCAAGA
*
36642027 ACAACATGAGAACTTCTTTCTTTTTCTTTTTTTCAATTCACTGCAATGGGGGGGCAACCACACAC
66 ACAACATGAGAACTTCTTTCTTTTTCTTTTTTTCAATTCACGGCAATGGGGGGGCAACCACACAC
36642092 ATTTTTTTTTGTCATCATTTACCTTCCCATTATTATTTGATTGCCCATACTCCTTATTTTATTTT
131 ATTTTTTTTTGTCATCATTTACCTTCCCATTATTATTTGATTGCCCATACTCCTTATTTTATTTT
36642157 TTTCTAACATAAACCATTATCACAACATGTTTTATGACATGTTTTGCCCATCACCCTTTGTCATG
196 TTTCTAACATAAACCATTATCACAACATGTTTTATGACATGTTTTGCCCATCACCCTTTGTCATG
36642222 GCCGGCCACTAGTAATTAAATGGGGGAAATTGACATGCAAGTCCACCCCTTTGACTACATGCACT
261 GCCGGCCACTAGTAATTAAATGGGGGAAATTGACATGCAAGTCCACCCCTTTGACTACATGCACT
* *
36642287 AATAGATCCTCATAGATTAACCTATCACATTTCAAAAGTGTCACACAAAAGTCCTATTGACTAAT
326 AATAGATCCTAATAGATTAACCTATCACATTTCAAAAGTGTCACACAAAAGTCCCATTGACTAAT
36642352 TTCACATGCAATTTACTAAATCGAAGCTTAAAACTTTCACACATTCATAATCACATATTTTAGAC
391 TTCACATGCAATTTACTAAATCGAAGCTTAAAACTTTCACACATTCATAATCACATATTTTAGAC
*
36642417 AATAAATATCATATTCAAGTAATTTGGTGACTCGATTTAGCGGTCCCGAAATCGCTTTCCGACTA
456 AATAAATATCATATTCAAGTAATTTGGTGACTCGATTTAGCGGTCCCGAAACCGCTTTCCGACTA
36642482 GGGTCACTTTAGGGCTGTCACA
521 GGGTCACTTTAGGGCTGTCACA
36642504 AACCCACCATAGCCGATTTTCTCAAAGCTCTTCCCCCTTCTTCTCTTTCTCCCATTCGGCCAAGA
1 AACCCACCATAGCCGATTTTCTCAAAGCTCTTCCCCCTTCTTCTCTTTCTCCCATTCGGCCAAGA
*
36642569 ACAACATGAGAACTTCTTTC-TTTTCTTTTTTTTCAATTCACGGCAATTGGGGGGCAACCACACA
66 ACAACATGAGAACTTCTTTCTTTTTC-TTTTTTTCAATTCACGGCAATGGGGGGGCAACCACACA
*
36642633 CATTTTTTTTTGTCATCATTTACCTTCCCATTATTATTTTATTGCCCATACTCCTTATTTTA-TT
130 CATTTTTTTTTGTCATCATTTACCTTCCCATTATTATTTGATTGCCCATACTCCTTATTTTATTT
36642697 TTTTCTAACATAAACCATTATCACAACATGTTTTATGACATGTTTTGCCCATCACCCTTTGTCAT
195 TTTTCTAACATAAACCATTATCACAACATGTTTTATGACATGTTTTGCCCATCACCCTTTGTCAT
*
36642762 GGCCGGCCACTAGTAATTAAATGGGGGAAATTGACATGCAAGTCCACCCTTTTGACTACATGCAC
260 GGCCGGCCACTAGTAATTAAATGGGGGAAATTGACATGCAAGTCCACCCCTTTGACTACATGCAC
*
36642827 TAATAGATCCTAATAGATTAACCTATCACATTTCAAAAGTGTCACACATAAGTCCCATTGACTAA
325 TAATAGATCCTAATAGATTAACCTATCACATTTCAAAAGTGTCACACAAAAGTCCCATTGACTAA
36642892 TTTCACATGCAATTTACTAAATCGAAGCTTAAAACTTTCACACATTCATAATCACATATTTTAGA
390 TTTCACATGCAATTTACTAAATCGAAGCTTAAAACTTTCACACATTCATAATCACATATTTTAGA
* *
36642957 CAATAAATATCATATTCAAGTAATTTGGTGACTCGTTTTAGCGGTCCCGAAACCGCTTTTCGACT
455 CAATAAATATCATATTCAAGTAATTTGGTGACTCGATTTAGCGGTCCCGAAACCGCTTTCCGACT
36643022 AGGGTCACTTTAGGGCTGTCACA
520 AGGGTCACTTTAGGGCTGTCACA
36643045 A
1 A
36643046 GCCTCTTCTC
Statistics
Matches: 531, Mismatches: 10, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
541 349 0.66
542 182 0.34
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (542 bp):
AACCCACCATAGCCGATTTTCTCAAAGCTCTTCCCCCTTCTTCTCTTTCTCCCATTCGGCCAAGA
ACAACATGAGAACTTCTTTCTTTTTCTTTTTTTCAATTCACGGCAATGGGGGGGCAACCACACAC
ATTTTTTTTTGTCATCATTTACCTTCCCATTATTATTTGATTGCCCATACTCCTTATTTTATTTT
TTTCTAACATAAACCATTATCACAACATGTTTTATGACATGTTTTGCCCATCACCCTTTGTCATG
GCCGGCCACTAGTAATTAAATGGGGGAAATTGACATGCAAGTCCACCCCTTTGACTACATGCACT
AATAGATCCTAATAGATTAACCTATCACATTTCAAAAGTGTCACACAAAAGTCCCATTGACTAAT
TTCACATGCAATTTACTAAATCGAAGCTTAAAACTTTCACACATTCATAATCACATATTTTAGAC
AATAAATATCATATTCAAGTAATTTGGTGACTCGATTTAGCGGTCCCGAAACCGCTTTCCGACTA
GGGTCACTTTAGGGCTGTCACA
Found at i:36654082 original size:46 final size:46
Alignment explanation
Indices: 36654025--36654148 Score: 203
Period size: 46 Copynumber: 2.7 Consensus size: 46
36654015 GTTGAGCATC
* * * *
36654025 CGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCT
36654071 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCT
*
36654117 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
36654149 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCT
Found at i:36661913 original size:16 final size:16
Alignment explanation
Indices: 36661892--36661938 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
36661882 CAACCAAAAG
36661892 CTCTATTCCATTACAA
1 CTCTATTCCATTACAA
* *
36661908 CTCTATTCAATTACAG
1 CTCTATTCCATTACAA
*
36661924 CCCTATTCCATTACA
1 CTCTATTCCATTACA
36661939 GTAAACCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.30, C:0.32, G:0.02, T:0.36
Consensus pattern (16 bp):
CTCTATTCCATTACAA
Found at i:36662483 original size:25 final size:25
Alignment explanation
Indices: 36662444--36662506 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
36662434 ACAACCCAAC
*
36662444 CAGAATAGGACAGAGCAAAAC-ATAA
1 CAGAATAGAACAGAGCAAAACTA-AA
* *
36662469 CAGAATAGAATAGAGTAAAACTAAA
1 CAGAATAGAACAGAGCAAAACTAAA
36662494 CAGAACT-GAACAG
1 CAGAA-TAGAACAG
36662507 TATAGAACGG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 30 0.94
26 2 0.06
ACGTcount: A:0.56, C:0.14, G:0.19, T:0.11
Consensus pattern (25 bp):
CAGAATAGAACAGAGCAAAACTAAA
Found at i:36664974 original size:49 final size:49
Alignment explanation
Indices: 36664903--36665076 Score: 233
Period size: 49 Copynumber: 3.5 Consensus size: 49
36664893 TTGGTATGCA
* *
36664903 TAGTAGCCTAC-CTTAGTACTACACATGCGACCAATTATCCAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
* * * ** * *
36664951 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCAGTACACG
36665002 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
*
36665051 TAGTATCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
36665077 CGTGACCTCA
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
48 10 0.09
49 52 0.49
50 6 0.06
51 38 0.36
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
Found at i:36665033 original size:100 final size:99
Alignment explanation
Indices: 36664895--36665081 Score: 329
Period size: 100 Copynumber: 1.9 Consensus size: 99
36664885 AAAGCTATTT
*
36664895 GGTATGCATAGTAGCCTACCTTAGTACTACACATGCGACCAATTATCCAATACACGTAGTAGCCT
1 GGTACGCATAGTAGCCTACCTTAGTACTACACATGCGACCAATTATCCAATACACGTAGTAGCCT
36664960 GCACTTAGTACTACACACGTGATCGAAGTTATCG
66 GCACTTAGTACTACACACGTGATCGAAGTTATCG
* * *
36664994 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGTATCC
1 GGTACGCATAGTAGCCTAC-CTTAGTACTACACATGCGACCAATTATCCAATACACGTAGTAGCC
36665059 TGCACTTAGTACTACACACGTGA
65 TGCACTTAGTACTACACACGTGA
36665082 CCTCACAATA
Statistics
Matches: 83, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
99 17 0.20
100 66 0.80
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
GGTACGCATAGTAGCCTACCTTAGTACTACACATGCGACCAATTATCCAATACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATCGAAGTTATCG
Found at i:36669561 original size:47 final size:47
Alignment explanation
Indices: 36669527--36669659 Score: 203
Period size: 47 Copynumber: 2.8 Consensus size: 47
36669517 TTTTAAGAGG
* * *
36669527 AGTTACCTTAATTTGGCTACGGGCCATGGTATAGGTACTCCGGGATA
1 AGTTACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAGGAAA
*
36669574 AGTTACCTTGATTTGGCTACGGGCCGTGGTATAGGTACTCCAGGAAA
1 AGTTACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAGGAAA
* * *
36669621 AGTTACCTTGATTTGGCTACGGACTAAGGTATAGGTACT
1 AGTTACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
36669660 TCTCGATTGT
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 78 1.00
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (47 bp):
AGTTACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAGGAAA
Found at i:36685326 original size:20 final size:21
Alignment explanation
Indices: 36685294--36685341 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
36685284 ACACAGACAC
*
36685294 AAAAAAAACAAAGTC-AAT-A
1 AAAAAAAACAAAGACAAATGA
*
36685313 AAAAAACAATAAAGACAAATGA
1 AAAAAA-AACAAAGACAAATGA
36685335 AAAAAAA
1 AAAAAAA
36685342 TGCGAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 6 0.25
20 7 0.29
21 4 0.17
22 7 0.29
ACGTcount: A:0.77, C:0.08, G:0.06, T:0.08
Consensus pattern (21 bp):
AAAAAAAACAAAGACAAATGA
Found at i:36686138 original size:47 final size:47
Alignment explanation
Indices: 36686069--36686415 Score: 507
Period size: 47 Copynumber: 7.4 Consensus size: 47
36686059 CCCTTCGGGA
* * * * *
36686069 CTTATCACATTTATTCACTTTCACATCCATTACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
36686116 CTTATCTCATATATACACTTTCACATTCATCACGTTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-AGGC
* * *
36686163 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
36686210 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
36686257 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
36686304 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
36686351 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
36686398 CTTATCACATATACACAC
1 CTTATCACATATATACAC
36686416 CTTGTACATC
Statistics
Matches: 276, Mismatches: 22, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
47 275 1.00
48 1 0.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:36690401 original size:39 final size:39
Alignment explanation
Indices: 36690355--36690459 Score: 158
Period size: 39 Copynumber: 2.7 Consensus size: 39
36690345 ATTTTGTCCA
* *
36690355 AGCACGAATGC-CTTCGGGGCTTAGCCCAGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCC-GATAAATCACC
* *
36690394 AGCACGAATGCTCTTTGGGACTTAGCCCGGTAAATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGATAAATCACC
36690433 AGCACGAATGCTCTTCGGGACTTAGCC
1 AGCACGAATGCTCTTCGGGACTTAGCC
36690460 TGTGACAGCC
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
39 46 0.77
40 14 0.23
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (39 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGATAAATCACC
Found at i:36691461 original size:40 final size:40
Alignment explanation
Indices: 36691406--36691622 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
36691396 CGGATGATAA
* * * *
36691406 CCGGGCTAAGTCCCGAAGGTATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
36691446 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36691486 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36691526 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
36691566 CCGGGCTATGTCCCGAAGGCA-TTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
36691605 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36691623 TACTTGGCTT
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 127 0.81
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36691539 original size:80 final size:79
Alignment explanation
Indices: 36691406--36691622 Score: 305
Period size: 80 Copynumber: 2.7 Consensus size: 79
36691396 CGGATGATAA
* * * *
36691406 CCGGGCTAAGTCCCGAAGGTATTTGCGCTAGTGACTAGT-TCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGT-ACTA-TATCCGGGTTAAGTCCCGAAGGCATTG
36691470 GTGCGAGTTACTATAT
64 GTGCGAGTTACTATAT
* *
36691486 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TACTATATCCGGGTTAAGTCCCGAAGGCATTGG
36691551 TGCGAGTTACTATAT
65 TGCGAGTTACTATAT
* *
36691566 CCGGGCTATGTCCCGAAGGCA-TTGAGCAAGTAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTA-CTATATCCGGGTTAAGTCCCGAAGG
36691623 TACTTGGCTT
Statistics
Matches: 125, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
78 16 0.13
79 17 0.14
80 91 0.73
81 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTACTATATCCGGGTTAAGTCCCGAAGGCATTGGT
GCGAGTTACTATAT
Found at i:36693031 original size:40 final size:40
Alignment explanation
Indices: 36692975--36693265 Score: 492
Period size: 40 Copynumber: 7.3 Consensus size: 40
36692965 GGGTGTTACA
* * *
36692975 TAGCCCGGGTATATCACCAGCATGAATGCTCTTCGGGACT
1 TAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACT
*
36693015 TAGCCCGGATACATCACCAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACT
* *
36693055 TAGTCCGGATACATCACCAGCACGAATGCTCTTCGGGACC
1 TAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACT
* *
36693095 TAGTCCGGATATATCACCAGCACGAATGCTCTTCGGGACT
1 TAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACT
*
36693135 TAGCCCGGATACATCAACAGCACGAATGCTCTTCGGGACT
1 TAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACT
36693175 TAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACT
1 TAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACT
*
36693215 TAGCCCGGATACATCACCAGCACGAATGCTCTTCAGGACT
1 TAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACT
36693255 TAGCCCGGATA
1 TAGCCCGGATA
36693266 TAACATACTG
Statistics
Matches: 237, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 237 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (40 bp):
TAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACT
Found at i:36695188 original size:47 final size:47
Alignment explanation
Indices: 36695119--36695472 Score: 541
Period size: 47 Copynumber: 7.6 Consensus size: 47
36695109 CCCTTCGGGA
* * * *
36695119 CTTATCACATTTATTCACTTTCACATCCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
36695166 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
36695213 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
36695260 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
36695306 CTTATCACATATATACACTTTCACATTCATCACA-TCGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
36695352 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
36695399 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
36695446 CTTATCACATATACACACCTTGCACAT
1 CTTATCACATATATACA-CTTTCACAT
36695473 CAATTTCATC
Statistics
Matches: 286, Mismatches: 18, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
45 7 0.02
46 73 0.26
47 198 0.69
48 8 0.03
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:36695449 original size:186 final size:188
Alignment explanation
Indices: 36695119--36695472 Score: 568
Period size: 186 Copynumber: 1.9 Consensus size: 188
36695109 CCCTTCGGGA
* * * * * *
36695119 CTTATCACATTTATTCACTTTCACATCCATCACATTGGCCATTAGGTCTTATCTCATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTCGCCATTAGGCCTTATCACATATACACAC
* * *
36695184 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACGTT
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCATCACATC
* * *
36695249 GGCCACTCGGCCTTATCACATATATACA-CTTTCACATTCATCACATTGGCCATTGGC
131 GGCCACTAGGCCTTATCACATATACACACCTTGCACATTCATCACATTGGCCATTGGC
*
36695306 CTTATCACATATATACACTTTCACATTCATCACA-TCGCCATTAGGCCTTATCACATATACACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTCGCCATTAGGCCTTATCACATATACACAC
36695370 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCATCACATC
*
36695435 GGCCATTAGGCCTTATCACATATACACACCTTGCACAT
131 GGCCACTAGGCCTTATCACATATACACACCTTGCACAT
36695473 CAATTTCATC
Statistics
Matches: 152, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
186 113 0.74
187 39 0.26
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATCCATCACATTCGCCATTAGGCCTTATCACATATACACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCATCACATC
GGCCACTAGGCCTTATCACATATACACACCTTGCACATTCATCACATTGGCCATTGGC
Found at i:36699561 original size:20 final size:21
Alignment explanation
Indices: 36699524--36699571 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
36699514 ATATATGTAT
*
36699524 TTAATTATTAATAGATATTTA
1 TTAATTATTAAAAGATATTTA
36699545 TTAATTA-TAAAAGATATTTA
1 TTAATTATTAAAAGATATTTA
36699565 TTAATTA
1 TTAATTA
36699572 AATAATTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (21 bp):
TTAATTATTAAAAGATATTTA
Found at i:36700517 original size:16 final size:16
Alignment explanation
Indices: 36700498--36700532 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
36700488 GTTTTGAATT
36700498 TATTGAATTA-ATATTA
1 TATTGAATTATAT-TTA
36700514 TATTGAATTATATTTA
1 TATTGAATTATATTTA
36700530 TAT
1 TAT
36700533 ATATTATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (16 bp):
TATTGAATTATATTTA
Found at i:36700942 original size:41 final size:41
Alignment explanation
Indices: 36700896--36701032 Score: 108
Period size: 41 Copynumber: 3.5 Consensus size: 41
36700886 TCGACCTCGA
*
36700896 GTCGATGAGACACTGGGTGTCACTATATTTCTTCGGA-TAG
1 GTCGATGAGACACTGGGTGTCACTATATTACTTCGGACTAG
* ** **
36700936 ATTCGATGAGGTACTGGGTACCAC--T-TTACTTC-GACTAG
1 -GTCGATGAGACACTGGGTGTCACTATATTACTTCGGACTAG
* * * *
36700974 GCCGATAAGACACTGGGTGTCACTATATTGCTTCGAACTA-
1 GTCGATGAGACACTGGGTGTCACTATATTACTTCGGACTAG
*
36701014 -TCTGATGAGGCACTGGGTG
1 GTC-GATGAGACACTGGGTG
36701033 CCATTCTGGT
Statistics
Matches: 72, Mismatches: 18, Indels: 13
0.70 0.17 0.13
Matches are distributed among these distances:
37 18 0.25
38 9 0.12
39 3 0.04
40 20 0.28
41 22 0.31
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (41 bp):
GTCGATGAGACACTGGGTGTCACTATATTACTTCGGACTAG
Found at i:36704205 original size:40 final size:40
Alignment explanation
Indices: 36704112--36704329 Score: 284
Period size: 40 Copynumber: 5.5 Consensus size: 40
36704102 AAGCCAAGTA
* * *
36704112 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
36704150 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36704190 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36704230 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36704270 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
36704311 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
36704330 TTATCATCCA
Statistics
Matches: 161, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
38 12 0.07
39 17 0.11
40 104 0.65
41 24 0.15
42 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:36709620 original size:20 final size:21
Alignment explanation
Indices: 36709583--36709630 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
36709573 ATATATGTAT
*
36709583 TTAATTATTAATAGATATTTA
1 TTAATTATTAAAAGATATTTA
36709604 TTAATTA-TAAAAGATATTTA
1 TTAATTATTAAAAGATATTTA
36709624 TTAATTA
1 TTAATTA
36709631 AATAATTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (21 bp):
TTAATTATTAAAAGATATTTA
Found at i:36710577 original size:16 final size:16
Alignment explanation
Indices: 36710558--36710592 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
36710548 GTTTTGAATT
36710558 TATTGAATTA-ATATTA
1 TATTGAATTATAT-TTA
36710574 TATTGAATTATATTTA
1 TATTGAATTATATTTA
36710590 TAT
1 TAT
36710593 ATATTATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (16 bp):
TATTGAATTATATTTA
Found at i:36711002 original size:41 final size:41
Alignment explanation
Indices: 36710956--36711092 Score: 108
Period size: 41 Copynumber: 3.5 Consensus size: 41
36710946 TCGACCTCGA
*
36710956 GTCGATGAGACACTGGGTGTCACTATATTTCTTCGGA-TAG
1 GTCGATGAGACACTGGGTGTCACTATATTACTTCGGACTAG
* ** **
36710996 ATTCGATGAGGTACTGGGTACCAC--T-TTACTTC-GACTAG
1 -GTCGATGAGACACTGGGTGTCACTATATTACTTCGGACTAG
* * * *
36711034 GCCGATAAGACACTGGGTGTCACTATATTGCTTCGAACTA-
1 GTCGATGAGACACTGGGTGTCACTATATTACTTCGGACTAG
*
36711074 -TCTGATGAGGCACTGGGTG
1 GTC-GATGAGACACTGGGTG
36711093 CCATTCTGGT
Statistics
Matches: 72, Mismatches: 18, Indels: 13
0.70 0.17 0.13
Matches are distributed among these distances:
37 18 0.25
38 9 0.12
39 3 0.04
40 20 0.28
41 22 0.31
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (41 bp):
GTCGATGAGACACTGGGTGTCACTATATTACTTCGGACTAG
Found at i:36716540 original size:9 final size:9
Alignment explanation
Indices: 36716505--36716549 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
36716495 TTCTCTCGAT
36716505 TCTCTCGAAC
1 TCTCTC-AAC
36716515 TCTCTCAAAC
1 TCTCTC-AAC
* *
36716525 CCTCTCAAG
1 TCTCTCAAC
36716534 TCTCTCAAC
1 TCTCTCAAC
36716543 TCTCTCA
1 TCTCTCA
36716550 TTTTTAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
9 16 0.53
10 14 0.47
ACGTcount: A:0.22, C:0.42, G:0.04, T:0.31
Consensus pattern (9 bp):
TCTCTCAAC
Found at i:36728182 original size:44 final size:44
Alignment explanation
Indices: 36728130--36728255 Score: 207
Period size: 44 Copynumber: 2.9 Consensus size: 44
36728120 CAGTATTCGG
*
36728130 TAGTACAAAATTAGTTGAAAGCTCCAAAAGAGCTAATAATTTGC
1 TAGTACAAAATTAGTTGAAAGCTCCAAAAGAGCTAATAATTTGA
* * *
36728174 TGGTACAAAATTAGTTGAAAGCTCTAAAAGAGCTAATTATTTGA
1 TAGTACAAAATTAGTTGAAAGCTCCAAAAGAGCTAATAATTTGA
*
36728218 TAGTACAAAATTAGTTGAAAGCTCCAGAAGAGCTAATA
1 TAGTACAAAATTAGTTGAAAGCTCCAAAAGAGCTAATA
36728256 TATCAATATC
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 74 1.00
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (44 bp):
TAGTACAAAATTAGTTGAAAGCTCCAAAAGAGCTAATAATTTGA
Found at i:36735454 original size:49 final size:49
Alignment explanation
Indices: 36735385--36735561 Score: 171
Period size: 49 Copynumber: 3.6 Consensus size: 49
36735375 TGACATGTGT
* * *
36735385 CAATGTAAGACCTGCCTGGGACGTGGCATCGACACCGATAGATGAGAGC
1 CAATGTAAGACCTGTCTGGGACATGGCATCGACACCGATATATGAGAGC
* * * * *
36735434 CATTGTAAGACCTGTTTGGGACATGGCATCGGC-CTCGATATATGAAAGT
1 CAATGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATATATGAGAGC
* * ** *
36735483 CAATGTAGGACCTGTCTGGGACATGGCAT--AGACTTATATATGTGAGC
1 CAATGTAAGACCTGTCTGGGACATGGCATCGACACCGATATATGAGAGC
* * *
36735530 CAGTGTAAGACCATGTTTGGAACATGGCATCG
1 CAATGTAAGACC-TGTCTGGGACATGGCATCG
36735562 GCATCGTACC
Statistics
Matches: 101, Mismatches: 22, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
47 19 0.19
48 17 0.17
49 65 0.64
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
CAATGTAAGACCTGTCTGGGACATGGCATCGACACCGATATATGAGAGC
Found at i:36735454 original size:93 final size:94
Alignment explanation
Indices: 36735342--36735560 Score: 237
Period size: 93 Copynumber: 2.3 Consensus size: 94
36735332 TATGCAAGCT
* * *
36735342 AGTGTAAGACCTGTCTGGGACATGGCATCAG-CTTG-ACATG-TGTCAATGTAAGACCTGCCTGG
1 AGTGTAAGACCTGTTTGGGACATGGCATCAGCCTCGAACATGAAGTCAATGTAAGACCTGCCTGG
*
36735404 GACGTGGCATCGACACCGATAGATGAGAGCC
66 GACATGGCAT--ACACCGATAGATGAGAGCC
* * * * *
36735435 ATTGTAAGACCTGTTTGGGACATGGCATCGGCCTCGATATATGAAAGTCAATGTAGGACCTGTCT
1 AGTGTAAGACCTGTTTGGGACATGGCATCAGCCTCGA-ACATG-AAGTCAATGTAAGACCTGCCT
* ** * *
36735500 GGGACATGGCATAGACTTATATATGTGAGCC
64 GGGACATGGCATACACCGATAGATGAGAGCC
*
36735531 AGTGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACC-TGTTTGGGACATGGCATC
36735561 GGCATCGTAC
Statistics
Matches: 104, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
93 28 0.27
94 3 0.03
96 28 0.27
97 17 0.16
98 28 0.27
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACCTGTTTGGGACATGGCATCAGCCTCGAACATGAAGTCAATGTAAGACCTGCCTGG
GACATGGCATACACCGATAGATGAGAGCC
Found at i:36735510 original size:98 final size:97
Alignment explanation
Indices: 36735383--36735563 Score: 247
Period size: 98 Copynumber: 1.9 Consensus size: 97
36735373 CTTGACATGT
* *
36735383 GTCAATGTAAGACCTGCCTGGGACGTGGCATCGACACCGATAGATGAGAGCCATTGTAAGACC-T
1 GTCAATGTAAGACCTGCCTGGGACATGGCAT--ACACCGATAGATGAGAGCCAGTGTAAGACCAT
*
36735447 GTTTGGGACATGGCATCGGCCTCGATATATGAAA
64 GTTTGGAACATGGCATCGGCCTCGATATATGAAA
* * * ** * *
36735481 GTCAATGTAGGACCTGTCTGGGACATGGCATAGACTTATATATGTGAGCCAGTGTAAGACCATGT
1 GTCAATGTAAGACCTGCCTGGGACATGGCATACACCGATAGATGAGAGCCAGTGTAAGACCATGT
36735546 TTGGAACATGGCATCGGC
66 TTGGAACATGGCATCGGC
36735564 ATCGTACCAT
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
96 24 0.33
97 20 0.28
98 28 0.39
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (97 bp):
GTCAATGTAAGACCTGCCTGGGACATGGCATACACCGATAGATGAGAGCCAGTGTAAGACCATGT
TTGGAACATGGCATCGGCCTCGATATATGAAA
Found at i:36739513 original size:12 final size:12
Alignment explanation
Indices: 36739496--36739550 Score: 58
Period size: 12 Copynumber: 4.2 Consensus size: 12
36739486 TGTTGAATTT
36739496 TAATTAATTTTA
1 TAATTAATTTTA
36739508 TAATTAACTGAATTT-
1 TAATTAA-T---TTTA
36739523 TAATTAATTTTA
1 TAATTAATTTTA
36739535 TAATTAATTTTGA
1 TAATTAATTTT-A
36739548 TAA
1 TAA
36739551 ATTTTGGTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
11 3 0.08
12 18 0.49
13 5 0.14
14 1 0.03
15 7 0.19
16 3 0.08
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (12 bp):
TAATTAATTTTA
Found at i:36739519 original size:27 final size:27
Alignment explanation
Indices: 36739489--36739541 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
36739479 ATGAACATGT
36739489 TGAATTTTAATTAATTTTATAATTAAC
1 TGAATTTTAATTAATTTTATAATTAAC
36739516 TGAATTTTAATTAATTTTATAATTAA
1 TGAATTTTAATTAATTTTATAATTAA
36739542 TTTTGATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (27 bp):
TGAATTTTAATTAATTTTATAATTAAC
Found at i:36739686 original size:16 final size:16
Alignment explanation
Indices: 36739660--36739693 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
36739650 GTCCAAAATT
36739660 ATATGAATTAATTCTTA
1 ATATGAATTAATT-TTA
36739677 ATAT-AATTAATTTTA
1 ATATGAATTAATTTTA
36739692 AT
1 AT
36739694 TTATATCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 8 0.47
17 4 0.24
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (16 bp):
ATATGAATTAATTTTA
Found at i:36747923 original size:25 final size:25
Alignment explanation
Indices: 36747870--36747923 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
36747860 AATTTTATTC
* *
36747870 AATTATCTAATTTTTCAATTTATTG
1 AATTATCTAATTTTTCAATTAATTA
36747895 AATTAT-TAATATTTT-ATATTAATTA
1 AATTATCTAAT-TTTTCA-ATTAATTA
36747920 AATT
1 AATT
36747924 TTTGAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.56
Consensus pattern (25 bp):
AATTATCTAATTTTTCAATTAATTA
Found at i:36750377 original size:19 final size:19
Alignment explanation
Indices: 36750353--36750460 Score: 163
Period size: 19 Copynumber: 5.9 Consensus size: 19
36750343 AATCATATCT
*
36750353 TCTAAGATTGCATATTATA
1 TCTAAGATTGCATATCATA
36750372 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
36750390 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
36750407 TCTAAGAGTG--TATCATA
1 TCTAAGATTGCATATCATA
36750424 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
36750443 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
36750461 TGAAGATTAT
Statistics
Matches: 83, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
17 31 0.37
18 15 0.18
19 37 0.45
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:36750468 original size:17 final size:19
Alignment explanation
Indices: 36750356--36750468 Score: 114
Period size: 17 Copynumber: 6.3 Consensus size: 19
36750346 CATATCTTCT
* *
36750356 AAGATTGCATATTATATCT
1 AAGATTGCATATCATATCG
*
36750375 AAGATTGCA-ATCATATCT
1 AAGATTGCATATCATATCG
*
36750393 AAGATTG--TATCATATCT
1 AAGATTGCATATCATATCG
* *
36750410 AAGAGTG--TATCATATCT
1 AAGATTGCATATCATATCG
*
36750427 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
36750446 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
36750463 AAGATT
1 AAGATT
36750469 ATATTTCCAT
Statistics
Matches: 87, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
17 37 0.43
18 16 0.18
19 34 0.39
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.37
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:36750866 original size:45 final size:45
Alignment explanation
Indices: 36750811--36751084 Score: 288
Period size: 45 Copynumber: 6.1 Consensus size: 45
36750801 GGAAGGCGAT
* *
36750811 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
36750856 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
36750901 ATCTGCT-TCTTCAATCTGCTCCCTGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
36750945 ATCTGTTATC-TCTGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTC-GATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * ** *
36750990 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTTAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAA
* *
36751035 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
36751082 ATC
1 ATC
36751085 ATCTTGGATC
Statistics
Matches: 188, Mismatches: 30, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
43 6 0.03
44 47 0.25
45 104 0.55
46 2 0.01
47 18 0.10
48 5 0.03
49 6 0.03
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:36750932 original size:89 final size:89
Alignment explanation
Indices: 36750811--36751084 Score: 311
Period size: 89 Copynumber: 3.0 Consensus size: 89
36750801 GGAAGGCGAT
* *
36750811 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCT-TCTTCGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
*
36750876 TCCCCGTCTAATACAGAGACGCCAA
65 TCCCCGTCTAATACAGAGATGCCAA
* * *
36750901 ATCTGCTTCTTCAATCTGCTCCCTGTCTAATACAGAGATGCCAAATCTGTTATC-TCTGATTTGC
1 ATCTGCTTCTTCGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTTATCTTC-GATCTGC
36750965 TCCCCGTCTAATACAGAGATGCCAA
65 TCCCCGTCTAATACAGAGATGCCAA
* * ** * * * ** * *
36750990 ATCTGTCATCTTGGATCTGCTTCGATGT-AAACACATGA-AGGTTAGATCTGCTATGTCTTCGAT
1 ATCTG-CTTCTTCGATCTGC-TCCCTGTCTAATACA-GAGACGCCAAATCTG-T-TATCTTCGAT
36751053 CTGCTCCCCGTCTAATACAGAGATGCCAA
61 CTGCTCCCCGTCTAATACAGAGATGCCAA
36751082 ATC
1 ATC
36751085 ATCTTGGATC
Statistics
Matches: 158, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
88 2 0.01
89 78 0.49
90 31 0.20
91 8 0.05
92 37 0.23
93 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (89 bp):
ATCTGCTTCTTCGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCT
CCCCGTCTAATACAGAGATGCCAA
Found at i:36751153 original size:78 final size:78
Alignment explanation
Indices: 36751024--36751239 Score: 344
Period size: 78 Copynumber: 2.8 Consensus size: 78
36751014 ATGTAAACAC
*
36751024 ATGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
36751089 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
36751102 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
36751166 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * * *
36751180 ATGAAGGTCAGATCTGCTATTTCTTCGATCTGCTCTCTGTCGAATATAGAGATGCCAAAT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
36751240 TTGTTTCTTC
Statistics
Matches: 126, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
77 2 0.02
78 123 0.98
79 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:36751262 original size:44 final size:43
Alignment explanation
Indices: 36751199--36751282 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 43
36751189 AGATCTGCTA
* *
36751199 TTTCTTCGATCTGCTCTCTGTCGAATATAGAGATGCCAAATTTG
1 TTTCTTCGATCTGCTCTCTGAC-AATACAGAGATGCCAAATTTG
* * *
36751243 TTTCTTCGATTTGTTCTCTGACAGTACAGAGATGCCAAAT
1 TTTCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAAT
36751283 CATCTTAGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
43 16 0.46
44 19 0.54
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (43 bp):
TTTCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATTTG
Found at i:36751592 original size:221 final size:220
Alignment explanation
Indices: 36751181--36751596 Score: 602
Period size: 221 Copynumber: 1.9 Consensus size: 220
36751171 TCTGCTTCAA
* * * *
36751181 TGAAGGTCAGATCTGCTATTTCTTCGATCTGCTCTCTGTCGAATATAGAGATGCCAAATTTGTTT
1 TGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATAGAGATGCCAAATCTGTTT
* * * ** * *
36751246 CTTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAATAC
66 CTTCGATATGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATCTGCTTCAACGTAAACAC
* * * * * *
36751311 GTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTAAATGCAAGGATACCAAATCATCTT
131 ATGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCAAATACAAGGAGACCAAATCATCTT
36751376 GGATCTACTTCGATGTGAAAACATC
196 GGATCTACTTCGATGTGAAAACATC
* *
36751401 TGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTA
1 TGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATAGAGATGCCAAATCTGTT-
*
36751466 TCTTCGATATGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAACGTAAACA
65 TCTTCGATATGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATCTGCTTCAACGTAAACA
*
36751531 CATGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATAC-A-GAGACGTCAAATCAT
130 CATGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCAAATACAAGGAGAC--CAAATCAT
36751594 CTT
193 CTT
36751597 AGATTTGCTT
Statistics
Matches: 172, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
219 4 0.02
220 59 0.34
221 109 0.63
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.31
Consensus pattern (220 bp):
TGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATAGAGATGCCAAATCTGTTT
CTTCGATATGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATCTGCTTCAACGTAAACAC
ATGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCAAATACAAGGAGACCAAATCATCTT
GGATCTACTTCGATGTGAAAACATC
Found at i:36751612 original size:87 final size:87
Alignment explanation
Indices: 36751466--36751851 Score: 621
Period size: 87 Copynumber: 4.4 Consensus size: 87
36751456 AAATCTGTTA
* * * *
36751466 TCTTCGATATGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
36751531 CATGAAAGCCAAATCAGCTATG
66 CATGAAAGCCAAATCAGCTATG
*
36751553 TCTTCGATCTGCTCCCTGCCAATACAGAGACGTCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
* *
36751618 CGTGAAAACCAAATCAGCTATG
66 CATGAAAGCCAAATCAGCTATG
* *
36751640 TCCTCGATCTGCTCCCTGCCAATATAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
36751705 -ATTGAAAGCCAATTCAGCTATG
66 CA-TGAAAGCCAAATCAGCTATG
*
36751727 TCTTCGATCTGCTCCCTGCCAATACAGAGACACCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
* *
36751792 CGTGAAAGCCAAATTAGCTATG
66 CATGAAAGCCAAATCAGCTATG
* *
36751814 TCCTCGATCTGCTCACTGCCAATACAGAGACGCCAAAT
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAAT
36751852 TTGCTGTCTT
Statistics
Matches: 275, Mismatches: 22, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
87 275 1.00
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (87 bp):
TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
CATGAAAGCCAAATCAGCTATG
Found at i:36751868 original size:44 final size:44
Alignment explanation
Indices: 36751817--36752115 Score: 277
Period size: 44 Copynumber: 6.8 Consensus size: 44
36751807 AGCTATGTCC
* * *
36751817 TCGATCTGCTCACTGCCAATACAGAGACGCCAAATTTGCTGTCT
1 TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCT
* *
36751861 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTATCT
1 TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCT
* * * *
36751905 TCGATCTTCTCTCTGTCAATATAGAGATGCCAAATCTGCTATCT
1 TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCT
* * *
36751949 TTGATCTGCTCTCTGACAATACAAAGACGCCAAA--T-C-ATCT
1 TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCT
* * ** * * * * *
36751989 TGGATTTGCT-TCAACGTAA-ACACGTGAAAGCCAAATCAGTTATGTCT
1 TCGATCTGCTCTCTGC-CAATACA-GAG-ACGCCAAATCTGCTA--TCT
* * * *
36752036 TCGATCTTCTCCCTGCCAATACAGAGATGCCAAATCTGTTATCT
1 TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCT
*
36752080 TCGATCTGCTCTCTACCAATACAGAGACGCCAAATC
1 TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATC
36752116 ATCTTGGATC
Statistics
Matches: 204, Mismatches: 40, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
39 5 0.02
40 15 0.07
41 8 0.04
42 1 0.00
44 142 0.70
45 1 0.00
46 13 0.06
47 14 0.07
48 5 0.02
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (44 bp):
TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCT
Found at i:36752139 original size:131 final size:129
Alignment explanation
Indices: 36751889--36752130 Score: 378
Period size: 131 Copynumber: 1.9 Consensus size: 129
36751879 ATACAGAGAT
* * * * *
36751889 GCCAAATCTGTTATCTTCGATCTTCTCTCTGTCAATATAGAGATGCCAAATCTGCTATCTTTGAT
1 GCCAAATCAGTTATCTTCGATCTTCTCCCTGCCAATACAGAGATGCCAAATCTGCTATCTTCGAT
*
36751954 CTGCTCTCTGACAATACAAAGACGCCAAATCATCTTGGATTTGCTTCAACGTAAACACGTGAAA
66 CTGCTCTCTGACAATACAAAGACGCCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
*
36752018 GCCAAATCAGTTATGTCTTCGATCTTCTCCCTGCCAATACAGAGATGCCAAATCTGTTATCTTCG
1 GCCAAATCAGTTA--TCTTCGATCTTCTCCCTGCCAATACAGAGATGCCAAATCTGCTATCTTCG
*
36752083 ATCTGCTCTCT-ACCAATACAGAGACGCCAAATCATCTTGGATCTGCTT
64 ATCTGCTCTCTGA-CAATACAAAGACGCCAAATCATCTTGGATCTGCTT
36752131 TAGTGTAAAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
129 12 0.12
130 1 0.01
131 89 0.87
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (129 bp):
GCCAAATCAGTTATCTTCGATCTTCTCCCTGCCAATACAGAGATGCCAAATCTGCTATCTTCGAT
CTGCTCTCTGACAATACAAAGACGCCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAA
Found at i:36752413 original size:16 final size:16
Alignment explanation
Indices: 36752392--36752425 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
36752382 TCATCCTTAT
36752392 TTCTCTCAAAATATCA
1 TTCTCTCAAAATATCA
*
36752408 TTCTCTCGAAATATCA
1 TTCTCTCAAAATATCA
36752424 TT
1 TT
36752426 TCCAGAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.24, G:0.03, T:0.41
Consensus pattern (16 bp):
TTCTCTCAAAATATCA
Found at i:36752910 original size:7 final size:7
Alignment explanation
Indices: 36752894--36752955 Score: 67
Period size: 7 Copynumber: 9.0 Consensus size: 7
36752884 TCTCCATTTC
*
36752894 TTCTTGT
1 TTCTTTT
36752901 TTCTTTT
1 TTCTTTT
36752908 TTCTTTT
1 TTCTTTT
36752915 TTCTTTT
1 TTCTTTT
36752922 TT-TTCTT
1 TTCTT-TT
*
36752929 TT-TCTT
1 TTCTTTT
36752935 TTCTTTT
1 TTCTTTT
36752942 TTCCTTTT
1 TT-CTTTT
36752950 TT-TTTT
1 TTCTTTT
36752956 GAAATAGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
6 10 0.20
7 32 0.65
8 7 0.14
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.84
Consensus pattern (7 bp):
TTCTTTT
Found at i:36758667 original size:22 final size:21
Alignment explanation
Indices: 36758632--36758707 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
36758622 AAAAGGTATC
* *
36758632 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
36758653 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
36758676 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
36758695 TGC-AATCATATCT
1 TACAAATCATATCT
36758708 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:36758692 original size:19 final size:19
Alignment explanation
Indices: 36758668--36758775 Score: 154
Period size: 19 Copynumber: 5.9 Consensus size: 19
36758658 AATCATATCT
36758668 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
36758687 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
36758705 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
* *
36758722 TCCAAGAGTG--TATCATA
1 TCTAAGATTGCATATCATA
36758739 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
36758758 TCTAATATTGCATATCAT
1 TCTAAGATTGCATATCAT
36758776 TGAAGATTAT
Statistics
Matches: 81, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 29 0.36
18 16 0.20
19 36 0.44
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:36761258 original size:25 final size:25
Alignment explanation
Indices: 36761215--36761262 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36761205 TTATAATACG
**
36761215 AAAAATGACTGTTTCACCCCTAGGT
1 AAAAATGACCATTTCACCCCTAGGT
*
36761240 AAAAATGACCATTTTACCCCTAG
1 AAAAATGACCATTTCACCCCTAG
36761263 AGTTTAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.27
Consensus pattern (25 bp):
AAAAATGACCATTTCACCCCTAGGT
Found at i:36763372 original size:16 final size:16
Alignment explanation
Indices: 36763346--36763379 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
36763336 GTCCAAAATT
36763346 ATATGAATTAATTTGTA
1 ATATGAATTAATTT-TA
36763363 ATAT-AATTAATTTTA
1 ATATGAATTAATTTTA
36763378 AT
1 AT
36763380 TTATATCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 9 0.53
17 4 0.24
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (16 bp):
ATATGAATTAATTTTA
Found at i:36774266 original size:21 final size:21
Alignment explanation
Indices: 36774241--36774304 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
36774231 GTGAAGGGTA
36774241 GCACACGGCCGTGTGACAG-AG
1 GCACACGGCCGTGTGA-AGCAG
36774262 GCACAC-GCTCGTGTGAAGCAG
1 GCACACGGC-CGTGTGAAGCAG
* *
36774283 GGACACGGCCATGTGAA-CAG
1 GCACACGGCCGTGTGAAGCAG
36774303 GC
1 GC
36774305 CGTGTAACTC
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
20 8 0.22
21 27 0.73
22 2 0.05
ACGTcount: A:0.25, C:0.28, G:0.36, T:0.11
Consensus pattern (21 bp):
GCACACGGCCGTGTGAAGCAG
Found at i:36777369 original size:38 final size:38
Alignment explanation
Indices: 36777327--36777402 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
36777317 CAATATAAAC
36777327 AAATTCATGCAAATGAATATGTTCAATTTATAGTCTAA
1 AAATTCATGCAAATGAATATGTTCAATTTATAGTCTAA
*
36777365 AAATTCATGCAAATGCATATGTTCAATTTATAGTCTAA
1 AAATTCATGCAAATGAATATGTTCAATTTATAGTCTAA
36777403 CTTATGCCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.37
Consensus pattern (38 bp):
AAATTCATGCAAATGAATATGTTCAATTTATAGTCTAA
Found at i:36780938 original size:17 final size:17
Alignment explanation
Indices: 36780916--36780951 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
36780906 ATTAAATAAG
36780916 TAAATTTTGATATTATA
1 TAAATTTTGATATTATA
36780933 TAAATTTTGATATTATA
1 TAAATTTTGATATTATA
36780950 TA
1 TA
36780952 GATTGAGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (17 bp):
TAAATTTTGATATTATA
Found at i:36783993 original size:37 final size:37
Alignment explanation
Indices: 36783952--36784236 Score: 316
Period size: 37 Copynumber: 7.8 Consensus size: 37
36783942 ATGTGGTATG
* * *
36783952 TGTAAGACCATTGCTGGGCTATGGCATCGTAATAGCG
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGATAGCA
* *
36783989 TGTAAGACCATAGCTGGGCTTTGGTATCGTGAT-GACA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGATAG-CA
* * *
36784026 TGTAAAACCATAGCTGGGCTATGGCATTGTGATA-CG
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGATAGCA
* * *
36784062 TGTAATACCATAGTTGGACTATGGCATCGTGAT-GACA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGATAG-CA
* *
36784099 TGTAAGACCATAGCTGGGCTATGGCATTGTGATA-CG
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGATAGCA
* *
36784135 TGTAAAACCATAGCTGGGCTACGGCATCGTGAT-GACA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGATAG-CA
*
36784172 TGTAAGACCATAGCTGGGCTATGGCATTGTGATA-CA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGATAGCA
*
36784208 TGTAACACCAT-GCCTGGGAC-ATGGCATCG
1 TGTAAGACCATAG-CTGGG-CTATGGCATCG
36784237 ATATGAGATC
Statistics
Matches: 209, Mismatches: 29, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
35 1 0.00
36 87 0.42
37 121 0.58
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (37 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGTGATAGCA
Found at i:36784097 original size:73 final size:73
Alignment explanation
Indices: 36783952--36784236 Score: 412
Period size: 73 Copynumber: 3.9 Consensus size: 73
36783942 ATGTGGTATG
* * * * * *
36783952 TGTAAGACCATTGCTGGGCTATGGCATCGTAATAGCGTGTAAGACCATAGCTGGGCTTTGGTATC
1 TGTAAGACCATAGCTGGGCTATGGCATTGTGATA-CGTGTAAAACCATAGCTGGGCTATGGCATC
36784017 GTGATGACA
65 GTGATGACA
* * * *
36784026 TGTAAAACCATAGCTGGGCTATGGCATTGTGATACGTGTAATACCATAGTTGGACTATGGCATCG
1 TGTAAGACCATAGCTGGGCTATGGCATTGTGATACGTGTAAAACCATAGCTGGGCTATGGCATCG
36784091 TGATGACA
66 TGATGACA
*
36784099 TGTAAGACCATAGCTGGGCTATGGCATTGTGATACGTGTAAAACCATAGCTGGGCTACGGCATCG
1 TGTAAGACCATAGCTGGGCTATGGCATTGTGATACGTGTAAAACCATAGCTGGGCTATGGCATCG
36784164 TGATGACA
66 TGATGACA
* *
36784172 TGTAAGACCATAGCTGGGCTATGGCATTGTGATACATGTAACACCAT-GCCTGGGAC-ATGGCAT
1 TGTAAGACCATAGCTGGGCTATGGCATTGTGATACGTGTAAAACCATAG-CTGGG-CTATGGCAT
36784235 CG
64 CG
36784237 ATATGAGATC
Statistics
Matches: 192, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
72 1 0.01
73 160 0.83
74 31 0.16
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (73 bp):
TGTAAGACCATAGCTGGGCTATGGCATTGTGATACGTGTAAAACCATAGCTGGGCTATGGCATCG
TGATGACA
Found at i:36784302 original size:48 final size:48
Alignment explanation
Indices: 36784231--36784366 Score: 184
Period size: 48 Copynumber: 2.8 Consensus size: 48
36784221 CTGGGACATG
* * *
36784231 GCATCGATATGAGATCCTGTGTAAGACCATATTTGGGATATGGCATCA
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATACGGCATCA
*
36784279 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATACGGCATCG
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATACGGCATCA
* * * *
36784327 GTATCGGTATGAGAT-TATATGTAAGATCATATCTGGGATA
1 GCATCGATATGAGATCT-TGTGTAAGACCATATCTGGGATA
36784367 AGGCTTCGGT
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
47 1 0.01
48 78 0.99
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (48 bp):
GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATACGGCATCA
Found at i:36785539 original size:14 final size:14
Alignment explanation
Indices: 36785520--36785548 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
36785510 TGGTATGGTA
36785520 ATGAATTTTTGTGT
1 ATGAATTTTTGTGT
36785534 ATGAATTTTTGTGT
1 ATGAATTTTTGTGT
36785548 A
1 A
36785549 ATCACGAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (14 bp):
ATGAATTTTTGTGT
Found at i:36788072 original size:40 final size:40
Alignment explanation
Indices: 36788026--36788101 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
36788016 GCTAAAAAAA
*
36788026 TGGCACTTAGTGTGCGGTTCAAAATAGCTTCGGCTAAATG
1 TGGCACTTAGTGTGCGATTCAAAATAGCTTCGGCTAAATG
* ** *
36788066 TGGCACTTGGTGTGCGATTGGAGATAGCTTCGGCTA
1 TGGCACTTAGTGTGCGATTCAAAATAGCTTCGGCTA
36788102 TATATGTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCAAAATAGCTTCGGCTAAATG
Found at i:36792922 original size:3 final size:3
Alignment explanation
Indices: 36792914--36792958 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
36792904 GATCATGATC
36792914 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
36792959 CTTCTTCTTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:36793878 original size:91 final size:91
Alignment explanation
Indices: 36793723--36793905 Score: 357
Period size: 91 Copynumber: 2.0 Consensus size: 91
36793713 AATTTCTATA
*
36793723 ATAACTTTTTTATGCAAAATTTTACGCTAGTGTATCTAATTCTAGCTTTGAAATGCATAGAAGCA
1 ATAACTTTTTTATGCAAAATCTTACGCTAGTGTATCTAATTCTAGCTTTGAAATGCATAGAAGCA
36793788 ATTTCACTTGGGTTACATCAAACAAC
66 ATTTCACTTGGGTTACATCAAACAAC
36793814 ATAACTTTTTTATGCAAAATCTTACGCTAGTGTATCTAATTCTAGCTTTGAAATGCATAGAAGCA
1 ATAACTTTTTTATGCAAAATCTTACGCTAGTGTATCTAATTCTAGCTTTGAAATGCATAGAAGCA
36793879 ATTTCACTTGGGTTACATCAAACAAC
66 ATTTCACTTGGGTTACATCAAACAAC
36793905 A
1 A
36793906 ATCTTTATGG
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (91 bp):
ATAACTTTTTTATGCAAAATCTTACGCTAGTGTATCTAATTCTAGCTTTGAAATGCATAGAAGCA
ATTTCACTTGGGTTACATCAAACAAC
Found at i:36797739 original size:74 final size:74
Alignment explanation
Indices: 36797613--36797755 Score: 207
Period size: 74 Copynumber: 1.9 Consensus size: 74
36797603 CAGTTGGCTG
** * *
36797613 TATAAACATTGTTTCTGAAATTTGAAATGTCAAGTTTCCTGTTAAAAACATCATTTTAT-TCGAA
1 TATAAACATTGTTAATGAAATTTGAAATGTCAAGGTTCCTGTTAAAAACATCATTTGATGT-GAA
36797677 GTAAAGGCCA
65 GTAAAGGCCA
* * *
36797687 TATAGACATTGTTAATGGAATTTGAAATGTCAAGGTTCCTTTTAAAAACATCATTTGATGTGAAG
1 TATAAACATTGTTAATGAAATTTGAAATGTCAAGGTTCCTGTTAAAAACATCATTTGATGTGAAG
36797752 TAAA
66 TAAA
36797756 TATGTTGCAT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
74 60 0.98
75 1 0.02
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (74 bp):
TATAAACATTGTTAATGAAATTTGAAATGTCAAGGTTCCTGTTAAAAACATCATTTGATGTGAAG
TAAAGGCCA
Found at i:36798566 original size:60 final size:59
Alignment explanation
Indices: 36798463--36798679 Score: 249
Period size: 60 Copynumber: 3.7 Consensus size: 59
36798453 AAACATACTC
* * * * *
36798463 AATTATACAAATTATTACAACTATGGTAATGTTTTGTATAATTACACAAAACATTACCT
1 AATTACACAAATTATTACAAATATCGTAATGTTTTGTGTAATTACACAAAACATTGCCT
* * *
36798522 AATTGCACAAATTGTTACAAATATTCGTAATGTATTGTGTAATTACACAAAACATTGCCT
1 AATTACACAAATTATTACAAATA-TCGTAATGTTTTGTGTAATTACACAAAACATTGCCT
* * * *
36798582 AATTACACAAATTATTACAGATCTCATAAAGTTTTGTGTAATTACAC--AACATTGCCT
1 AATTACACAAATTATTACAAATATCGTAATGTTTTGTGTAATTACACAAAACATTGCCT
* * * ** *
36798639 TATTACACAAATTGTTACAAATCTAATAAAGTTTTGTGTAA
1 AATTACACAAATTATTACAAATATCGTAATGTTTTGTGTAA
36798680 CACAAATTGC
Statistics
Matches: 138, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
57 47 0.34
59 40 0.29
60 51 0.37
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.36
Consensus pattern (59 bp):
AATTACACAAATTATTACAAATATCGTAATGTTTTGTGTAATTACACAAAACATTGCCT
Found at i:36798645 original size:57 final size:58
Alignment explanation
Indices: 36798493--36798679 Score: 241
Period size: 57 Copynumber: 3.2 Consensus size: 58
36798483 CTATGGTAAT
* * * * * *
36798493 GTTTTGTATAATTACACAAAACATTACCTAATTGCACAAATTGTTACAAATATTCGTAAT
1 GTTTTGTGTAATTACAC-AAACATTGCCTAATTACACAAATTGTTACAAAT-CTCATAAA
* * *
36798553 GTATTGTGTAATTACACAAAACATTGCCTAATTACACAAATTATTACAGATCTCATAAA
1 GTTTTGTGTAATTACAC-AAACATTGCCTAATTACACAAATTGTTACAAATCTCATAAA
* *
36798612 GTTTTGTGTAATTACAC-AACATTGCCTTATTACACAAATTGTTACAAATCTAATAAA
1 GTTTTGTGTAATTACACAAACATTGCCTAATTACACAAATTGTTACAAATCTCATAAA
36798669 GTTTTGTGTAA
1 GTTTTGTGTAA
36798680 CACAAATTGC
Statistics
Matches: 113, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
57 47 0.42
59 21 0.19
60 45 0.40
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (58 bp):
GTTTTGTGTAATTACACAAACATTGCCTAATTACACAAATTGTTACAAATCTCATAAA
Found at i:36801338 original size:17 final size:18
Alignment explanation
Indices: 36801316--36801349 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
36801306 GATTGAGGAT
*
36801316 GGTTGTTGG-GGAATGGA
1 GGTTGTGGGAGGAATGGA
36801333 GGTTGTGGGAGGAATGG
1 GGTTGTGGGAGGAATGG
36801350 TTGACTTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.18, C:0.00, G:0.56, T:0.26
Consensus pattern (18 bp):
GGTTGTGGGAGGAATGGA
Found at i:36805969 original size:22 final size:22
Alignment explanation
Indices: 36805944--36805988 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
36805934 TTTTAATAAA
36805944 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
36805966 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
36805988 A
1 A
36805989 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:36809715 original size:22 final size:22
Alignment explanation
Indices: 36809689--36809733 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
36809679 TTTTAATAAA
36809689 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
36809711 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
36809733 A
1 A
36809734 CATTATCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:36816836 original size:39 final size:39
Alignment explanation
Indices: 36816752--36816873 Score: 165
Period size: 39 Copynumber: 3.1 Consensus size: 39
36816742 CAAATCCAAT
* *
36816752 CACCACCACAAAGCATGCGGGACTTTAAGCCCGGATATAA
1 CACCAGCACAAAGCCTGCGGGACTTT-AGCCCGGATATAA
*
36816792 TACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
1 CACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
* * *
36816831 CACCAGCACGAATGCCTTCGGGAC-CTAGCCCGGATATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAA
36816870 CACC
1 CACC
36816874 CGGATATAAC
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 39 0.53
40 35 0.47
ACGTcount: A:0.31, C:0.32, G:0.21, T:0.16
Consensus pattern (39 bp):
CACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
Found at i:36816877 original size:13 final size:13
Alignment explanation
Indices: 36816859--36816886 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
36816849 CGGGACCTAG
36816859 CCCGGATATAACA
1 CCCGGATATAACA
36816872 CCCGGATATAACA
1 CCCGGATATAACA
36816885 CC
1 CC
36816887 AGCACGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.36, G:0.14, T:0.14
Consensus pattern (13 bp):
CCCGGATATAACA
Found at i:36816898 original size:52 final size:52
Alignment explanation
Indices: 36816820--36816925 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 52
36816810 GGGACTTTAG
36816820 CCCGGATATAACACCAGCACGAATGCCTTCGGGACCTAGCCCGGATATAACA
1 CCCGGATATAACACCAGCACGAATGCCTTCGGGACCTAGCCCGGATATAACA
* *
36816872 CCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGTCCGGATATAACA
1 CCCGGATATAACACCAGCACGAATGCCTTCGGGACCTAGCCCGGATATAACA
36816924 CC
1 CC
36816926 AGCACGAATG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.30, C:0.32, G:0.21, T:0.17
Consensus pattern (52 bp):
CCCGGATATAACACCAGCACGAATGCCTTCGGGACCTAGCCCGGATATAACA
Found at i:36816927 original size:39 final size:39
Alignment explanation
Indices: 36816872--36816960 Score: 169
Period size: 39 Copynumber: 2.3 Consensus size: 39
36816862 GGATATAACA
36816872 CCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAG
1 CCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAG
*
36816911 TCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAG
1 CCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAG
36816950 CCCGGATATAA
1 CCCGGATATAA
36816961 TTCTCCATTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (39 bp):
CCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAG
Found at i:36816936 original size:91 final size:91
Alignment explanation
Indices: 36816781--36816960 Score: 299
Period size: 91 Copynumber: 2.0 Consensus size: 91
36816771 GGACTTTAAG
*
36816781 CCCGGATATAATACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACACCAGCACGAATGC
1 CCCGGATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACACCAGCACGAATGC
36816846 CTTCGGGACCTAGCCCGGATATAACA
66 CTTCGGGACCTAGCCCGGATATAACA
* * *
36816872 CCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TTAGTCCGGATATAACACCAGCACGAATG
1 CCCGGATATAACACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAACACCAGCACGAATG
*
36816936 CCTTCGGGACTTAGCCCGGATATAA
65 CCTTCGGGACCTAGCCCGGATATAA
36816961 TTCTCCATTA
Statistics
Matches: 83, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
91 71 0.86
92 12 0.14
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (91 bp):
CCCGGATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACACCAGCACGAATGC
CTTCGGGACCTAGCCCGGATATAACA
Found at i:36825668 original size:43 final size:43
Alignment explanation
Indices: 36825587--36825669 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
36825577 GAGATATGTG
*
36825587 GCATCCGAGCTCGTTAAGAGGTCCGAGTTCATTATGGATGCAA
1 GCATCCGAGCTCGTTAAGAGGTCCGAGTTCATGATGGATGCAA
* * * *
36825630 GCATCTGAGCTCGTTGAGAGGTCTGAGTTCATGGTGGATG
1 GCATCCGAGCTCGTTAAGAGGTCCGAGTTCATGATGGATG
36825670 TGATTCATGT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.28
Consensus pattern (43 bp):
GCATCCGAGCTCGTTAAGAGGTCCGAGTTCATGATGGATGCAA
Found at i:36830793 original size:12 final size:12
Alignment explanation
Indices: 36830778--36830802 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36830768 CATTGATGAC
36830778 GACATTGGTGTT
1 GACATTGGTGTT
36830790 GACATTGGTGTT
1 GACATTGGTGTT
36830802 G
1 G
36830803 GTACAAGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.36, T:0.40
Consensus pattern (12 bp):
GACATTGGTGTT
Found at i:36835088 original size:47 final size:47
Alignment explanation
Indices: 36834716--36835054 Score: 507
Period size: 47 Copynumber: 7.2 Consensus size: 47
36834706 TTAGGATTTT
* ** * * * **
36834716 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36834763 ATGTGATGAATGTGAACATGCATTTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36834810 ATGTGATGAATGTGAACATGTACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36834857 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36834904 ATGTGATGAATATGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36834951 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36834998 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
36835045 ATGTGATGAA
1 ATGTGATGAA
36835055 CGTGGAAGTG
Statistics
Matches: 267, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 267 1.00
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:36835121 original size:46 final size:46
Alignment explanation
Indices: 36835068--36835158 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
36835058 GGAAGTGTAT
* * *
36835068 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
36835114 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
36835159 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.07, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:36838354 original size:46 final size:46
Alignment explanation
Indices: 36838267--36838392 Score: 137
Period size: 46 Copynumber: 2.7 Consensus size: 46
36838257 TAATCTCGTA
* * * * * *
36838267 GCCGATGCATGTCTCAAACATGTCTGAAACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTAAACTGCCCTACGTCTCAAG
* *
36838313 GCCGATGCATGTCCCAGACATGTCTTATACTAGCCCT-CGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTAAACT-GCCCTACGTCTCAAG
*
36838359 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTAAACTG
36838393 GCTCTAATAA
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
46 41 0.60
47 18 0.26
48 9 0.13
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTAAACTGCCCTACGTCTCAAG
Found at i:36839021 original size:27 final size:27
Alignment explanation
Indices: 36838990--36839049 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
36838980 TTTCATGCTA
*
36838990 ACACCTTTCACAAAAGTTGTTTATAAG
1 ACACCCTTCACAAAAGTTGTTTATAAG
36839017 ACACCCTTCACAAAAGTTGTTTATAAG
1 ACACCCTTCACAAAAGTTGTTTATAAG
36839044 ACACCC
1 ACACCC
36839050 AAGACTCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (27 bp):
ACACCCTTCACAAAAGTTGTTTATAAG
Found at i:36839800 original size:29 final size:29
Alignment explanation
Indices: 36839768--36839852 Score: 80
Period size: 29 Copynumber: 2.9 Consensus size: 29
36839758 CTTAGATCAC
* *
36839768 CACAACGGGATCCTTTTAACAGAGATCGT
1 CACAAAGGCATCCTTTTAACAGAGATCGT
* * * *
36839797 CACAAATGCTTTCTTTTAACAGAGATCGC
1 CACAAAGGCATCCTTTTAACAGAGATCGT
* * * *
36839826 CATAAATGCTTTCTTTTAACAGAGATC
1 CACAAAGGCATCCTTTTAACAGAGATC
36839853 ACTATAAAGA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (29 bp):
CACAAAGGCATCCTTTTAACAGAGATCGT
Found at i:36839859 original size:29 final size:28
Alignment explanation
Indices: 36839780--36839870 Score: 112
Period size: 29 Copynumber: 3.1 Consensus size: 28
36839770 CAACGGGATC
* *
36839780 CTTTTAACAGAGATCGTCACAAATGCTTT
1 CTTTTAACAGAGATCCT-ATAAATGCTTT
*
36839809 CTTTTAACAGAGATCGCCATAAATGCTTT
1 CTTTTAACAGAGATC-CTATAAATGCTTT
36839838 CTTTTAACAGAGATCACTATAAA-GACTTT
1 CTTTTAACAGAGATC-CTATAAATG-CTTT
36839867 CTTT
1 CTTT
36839871 CAGAAATAAC
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
28 1 0.02
29 54 0.98
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (28 bp):
CTTTTAACAGAGATCCTATAAATGCTTT
Found at i:36842075 original size:26 final size:26
Alignment explanation
Indices: 36842015--36842075 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 26
36842005 ACATATGTAT
*
36842015 AATAATATATAAGAATATTTAAGTAA
1 AATAATATATAAGAATATTTAAATAA
*
36842041 AATATTATATGAA-AAT-TTTAAAATAA
1 AATAATATAT-AAGAATATTT-AAATAA
*
36842067 TATAATATA
1 AATAATATA
36842076 AAAAAGCCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 3 0.10
26 24 0.83
27 2 0.07
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (26 bp):
AATAATATATAAGAATATTTAAATAA
Found at i:36849984 original size:44 final size:44
Alignment explanation
Indices: 36849935--36850024 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
36849925 AGGGAAATAC
36849935 ATTCAATGCCAACCCATTGTCTATCAAGACTCCCGGAAATGTGT
1 ATTCAATGCCAACCCATTGTCTATCAAGACTCCCGGAAATGTGT
36849979 ATTCAATGCCAACCCATTGTCTATCAAGACTCCCGGAAATGTGT
1 ATTCAATGCCAACCCATTGTCTATCAAGACTCCCGGAAATGTGT
36850023 AT
1 AT
36850025 CCTTTGCATC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (44 bp):
ATTCAATGCCAACCCATTGTCTATCAAGACTCCCGGAAATGTGT
Found at i:36850025 original size:22 final size:22
Alignment explanation
Indices: 36849956--36850025 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
36849946 ACCCATTGTC
36849956 TATCAAGACTCCCGGAAATGTG
1 TATCAAGACTCCCGGAAATGTG
* * * *
36849978 TATTCAATGCCAACCC---ATTGTC
1 TA-TCAA-GAC-TCCCGGAAATGTG
36850000 TATCAAGACTCCCGGAAATGTG
1 TATCAAGACTCCCGGAAATGTG
36850022 TATC
1 TATC
36850026 CTTTGCATCT
Statistics
Matches: 34, Mismatches: 8, Indels: 12
0.63 0.15 0.22
Matches are distributed among these distances:
19 3 0.09
20 2 0.06
21 4 0.12
22 16 0.47
23 4 0.12
24 2 0.06
25 3 0.09
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (22 bp):
TATCAAGACTCCCGGAAATGTG
Found at i:36854240 original size:14 final size:14
Alignment explanation
Indices: 36854221--36854248 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36854211 TTAAGGCGAA
36854221 GATAGCGACCCTCT
1 GATAGCGACCCTCT
36854235 GATAGCGACCCTCT
1 GATAGCGACCCTCT
36854249 TCCTTTCATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (14 bp):
GATAGCGACCCTCT
Found at i:36860244 original size:17 final size:17
Alignment explanation
Indices: 36860224--36860268 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
36860214 ACCTATTTCT
*
36860224 ATTTACAAAA-TAAAATA
1 ATTTA-AAAATTAAAAAA
36860241 ATTTAAAAATTAAAAAA
1 ATTTAAAAATTAAAAAA
36860258 A-TT-AAAATTAA
1 ATTTAAAAATTAA
36860269 CTTAATTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 8 0.31
16 6 0.23
17 12 0.46
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (17 bp):
ATTTAAAAATTAAAAAA
Found at i:36860490 original size:18 final size:18
Alignment explanation
Indices: 36860463--36860497 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36860453 AAACAAAATT
36860463 TGAGAAAATTAAGAGAGG
1 TGAGAAAATTAAGAGAGG
* *
36860481 TGAGAGAATTGAGAGAG
1 TGAGAAAATTAAGAGAG
36860498 TTGGATTTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.37, T:0.17
Consensus pattern (18 bp):
TGAGAAAATTAAGAGAGG
Found at i:36874472 original size:33 final size:33
Alignment explanation
Indices: 36874434--36874501 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
36874424 ATTGACCTAA
36874434 ATTGAGAGTAACAAAACAAACCCTTCATCAATC
1 ATTGAGAGTAACAAAACAAACCCTTCATCAATC
36874467 ATTGAGAGTAACAAAACAAACCCTTCATCAATC
1 ATTGAGAGTAACAAAACAAACCCTTCATCAATC
36874500 AT
1 AT
36874502 ATTAAGGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.46, C:0.24, G:0.09, T:0.22
Consensus pattern (33 bp):
ATTGAGAGTAACAAAACAAACCCTTCATCAATC
Found at i:36875232 original size:3 final size:3
Alignment explanation
Indices: 36875224--36875263 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
36875214 AATTTGCATG
36875224 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
36875264 GCTTTACGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:36875882 original size:19 final size:18
Alignment explanation
Indices: 36875840--36875875 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
36875830 ACCATATTCT
36875840 GCTAAAAATCAATATTTC
1 GCTAAAAATCAATATTTC
*
36875858 GCTAAAAATTAATATTTC
1 GCTAAAAATCAATATTTC
36875876 ATGTAAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (18 bp):
GCTAAAAATCAATATTTC
Found at i:36884528 original size:10 final size:10
Alignment explanation
Indices: 36884499--36884546 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
36884489 CTTCTCCCAA
36884499 TTTTCTTTGAT
1 TTTTCTTTG-T
*
36884510 TTTTATTTGT
1 TTTTCTTTGT
*
36884520 ATTTCTTTGT
1 TTTTCTTTGT
36884530 TTTTC-TTGT
1 TTTTCTTTGT
*
36884539 TTCTCTTT
1 TTTTCTTT
36884547 TTGGTTCTCC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
9 8 0.26
10 15 0.48
11 8 0.26
ACGTcount: A:0.06, C:0.10, G:0.08, T:0.75
Consensus pattern (10 bp):
TTTTCTTTGT
Found at i:36885341 original size:21 final size:21
Alignment explanation
Indices: 36885294--36885343 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
36885284 CTGTGTCCCT
* * *
36885294 CTGTCACATGGGTGTGTGTCT
1 CTGTCACATGGCTGTGTATCC
* *
36885315 CAGTCAGATGGCTGTGTATCC
1 CTGTCACATGGCTGTGTATCC
36885336 CTGTCACA
1 CTGTCACA
36885344 CGATCTGAGC
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.24, G:0.28, T:0.32
Consensus pattern (21 bp):
CTGTCACATGGCTGTGTATCC
Found at i:36886562 original size:35 final size:36
Alignment explanation
Indices: 36886499--36886569 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
36886489 CAATGATATG
*
36886499 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATATTAGATATGATA
36886535 CAATCTTAGATATGAT-TGCAATATTAGATATGATA
1 CAATCTTAGATATGATATGCAATATTAGATATGATA
36886570 TGTAATCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 18 0.53
36 16 0.47
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATATTAGATATGATA
Found at i:36886587 original size:22 final size:23
Alignment explanation
Indices: 36886560--36886604 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
36886550 TTGCAATATT
36886560 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
36886582 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
36886605 GATTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:36886588 original size:17 final size:19
Alignment explanation
Indices: 36886491--36886581 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
36886481 ATAATCTTCA
36886491 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
36886510 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
36886529 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
36886546 ATGAT-TGCAATATTAGAT
1 ATGATATGCAATCTTAGAT
*
36886564 ATGATATGTAATCTTAGA
1 ATGATATGCAATCTTAGA
36886582 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.23
19 35 0.53
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:36886614 original size:22 final size:23
Alignment explanation
Indices: 36886570--36886614 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
36886560 AGATATGATA
*
36886570 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
36886593 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
36886615 GTAGATACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:36886896 original size:18 final size:17
Alignment explanation
Indices: 36886873--36886906 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
36886863 TTTCCCGAAT
*
36886873 TTTTTTTATATATTTTAA
1 TTTTTTCATA-ATTTTAA
36886891 TTTTTTCATAATTTTA
1 TTTTTTCATAATTTTA
36886907 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTCATAATTTTAA
Found at i:36900616 original size:26 final size:26
Alignment explanation
Indices: 36900583--36900635 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
36900573 CATGATTTAG
36900583 ATATGGATGTATGCTAATTACTCGAT
1 ATATGGATGTATGCTAATTACTCGAT
36900609 ATATGGATGTATGCTAATTACTCGAT
1 ATATGGATGTATGCTAATTACTCGAT
36900635 A
1 A
36900636 AGTTTACTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (26 bp):
ATATGGATGTATGCTAATTACTCGAT
Found at i:36904836 original size:19 final size:20
Alignment explanation
Indices: 36904801--36904838 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
36904791 ATAAGGTGGT
36904801 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
36904821 AAGAT-ATGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
36904839 TGGAGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Done.