Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 115 of 250
Found at i:36911615 original size:44 final size:44
Alignment explanation
Indices: 36911448--36911662 Score: 279
Period size: 45 Copynumber: 4.9 Consensus size: 44
36911438 TATTATACAG
*
36911448 TACTATTCGGGCCTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
36911492 TAGTATTCGGGCCTTTGACCCTAGCAGACTATAATGCCGATGAGA
1 TACTATTCGGGCC-TTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
36911537 TATTATTCAGGCCTCTGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCT-TGAGCCTAGCAGGCTATAATGCCGGTGAGA
36911582 TACTATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * * * *
36911626 CACTATTGGGGCCTCGGGCCTAGTAGGCGA-AATGCCG
1 TACTATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCG
36911663 ATGAATAAAT
Statistics
Matches: 149, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
43 7 0.05
44 66 0.44
45 76 0.51
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (44 bp):
TACTATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:36920242 original size:27 final size:27
Alignment explanation
Indices: 36920212--36920264 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
36920202 GAAATAAACT
36920212 CGATAAAATCATAAACACAT-AATTCAA
1 CGATAAAAT-ATAAACACATAAATTCAA
* * *
36920239 CGATTAAATATAGATACATAAATTCA
1 CGATAAAATATAAACACATAAATTCA
36920265 CAACAACTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.53, C:0.15, G:0.06, T:0.26
Consensus pattern (27 bp):
CGATAAAATATAAACACATAAATTCAA
Found at i:36921088 original size:26 final size:26
Alignment explanation
Indices: 36921059--36921114 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
36921049 TGATAAAAAT
* *
36921059 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGCTAAATGTTCCA
36921085 TGATAATGGGTTAGCTAAATGTTCCA
1 TGATAATGGGTTAGCTAAATGTTCCA
36921111 TGAT
1 TGAT
36921115 GGGCATTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGCTAAATGTTCCA
Found at i:36926523 original size:26 final size:26
Alignment explanation
Indices: 36926487--36926562 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
36926477 CATATTTTTT
36926487 TCAAAATTTTACTAGGGGTAAAATCA
1 TCAAAATTTTACTAGGGGTAAAATCA
* *
36926513 TCAAAATTTTACTAGGGGTAAATTCG
1 TCAAAATTTTACTAGGGGTAAAATCA
*
36926539 TCAAAATTTTACCAGGGGTAAAAT
1 TCAAAATTTTACTAGGGGTAAAAT
36926563 AGGGATGAGA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGGTAAAATCA
Found at i:36938087 original size:39 final size:40
Alignment explanation
Indices: 36938042--36938152 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 40
36938032 CGGGGTTTAG
* * *
36938042 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
36938081 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
36938121 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
36938153 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:36938112 original size:40 final size:40
Alignment explanation
Indices: 36938065--36938209 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
36938055 CTCGCACAAG
* * * * *
36938065 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
36938105 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
36938145 GCCTTC-GGATCTTAGTCCAGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
36938186 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
36938210 CATTCGCGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 26 0.29
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:36946109 original size:39 final size:40
Alignment explanation
Indices: 36946064--36946231 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
36946054 CGGGGTTTAG
* * *
36946064 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
36946103 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
36946143 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
36946183 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
36946224 CCGGATAT
1 CCGGATAT
36946232 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:36946214 original size:41 final size:40
Alignment explanation
Indices: 36946087--36946231 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
36946077 CTCGCACAAG
* * * * *
36946087 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
36946127 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
36946167 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
36946208 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
36946232 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:36949775 original size:56 final size:56
Alignment explanation
Indices: 36949619--36949880 Score: 391
Period size: 56 Copynumber: 4.7 Consensus size: 56
36949609 GAAGTATATG
* * * *
36949619 TGGCATCGATATGTGGCTCCGATATATTTGTGCGAGTAAGTCCACGTTTAATACGT
1 TGGCATCGATATGTGACTCCGATATATGTGTACGAGTAAGACCACGTTTAATACGT
* ** *
36949675 TGGCATCGAT-TGTGACTCCGATATATATGTGTGAGTAAGTCCACGTTTAATACGT
1 TGGCATCGATATGTGACTCCGATATATGTGTACGAGTAAGACCACGTTTAATACGT
*
36949730 TGGCATCGATATGTGACTCCAATATATGTGTACGAGTAAGACCACGTTTAATACGT
1 TGGCATCGATATGTGACTCCGATATATGTGTACGAGTAAGACCACGTTTAATACGT
* **
36949786 TGGCATCGATATGTGACTCCGATATATGTGTGCGAGTAAGACCACGTTTAATATAT
1 TGGCATCGATATGTGACTCCGATATATGTGTACGAGTAAGACCACGTTTAATACGT
* *
36949842 TGGCATCGATATATGACTCTGATATATGTGTACGAGTAA
1 TGGCATCGATATGTGACTCCGATATATGTGTACGAGTAA
36949881 AACCCTGTCT
Statistics
Matches: 190, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
55 52 0.27
56 138 0.73
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33
Consensus pattern (56 bp):
TGGCATCGATATGTGACTCCGATATATGTGTACGAGTAAGACCACGTTTAATACGT
Found at i:36950173 original size:21 final size:22
Alignment explanation
Indices: 36950147--36950190 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
36950137 TATGCATATG
36950147 TAAAAGTAT-T-CATGATGAAAA
1 TAAAAGTATGTGCAT-ATGAAAA
36950168 TAAAAGTATGTGCATATGAAAA
1 TAAAAGTATGTGCATATGAAAA
36950190 T
1 T
36950191 TATAACTGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.43
22 9 0.43
23 3 0.14
ACGTcount: A:0.50, C:0.05, G:0.16, T:0.30
Consensus pattern (22 bp):
TAAAAGTATGTGCATATGAAAA
Found at i:36956005 original size:31 final size:31
Alignment explanation
Indices: 36955962--36956042 Score: 144
Period size: 31 Copynumber: 2.6 Consensus size: 31
36955952 CTCAGCATAG
*
36955962 ACTGGGCTGAAGCCTTTACATTATTCATATC
1 ACTGGGCCGAAGCCTTTACATTATTCATATC
*
36955993 ACTGGGCCGAAGCCTTTTCATTATTCATATC
1 ACTGGGCCGAAGCCTTTACATTATTCATATC
36956024 ACTGGGCCGAAGCCTTTAC
1 ACTGGGCCGAAGCCTTTAC
36956043 TGTAACAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTACATTATTCATATC
Found at i:36956295 original size:26 final size:25
Alignment explanation
Indices: 36956260--36956330 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
36956250 CTCTTTTAAT
*
36956260 AACTGGGGCAAAAGCCCTTTTTGGTA
1 AACTGGGGC-AAAGCCCTTTTCGGTA
*
36956286 AACTGAGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
36956311 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
36956331 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 33 0.80
26 8 0.20
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:36956500 original size:25 final size:25
Alignment explanation
Indices: 36956463--36956510 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
36956453 ACAATTAAAC
* *
36956463 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
36956488 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
36956511 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:36959700 original size:19 final size:17
Alignment explanation
Indices: 36959672--36959712 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
36959662 TTTTGTTCTT
36959672 TACAGAATCATAGCCTAGC
1 TACAGAATCA-A-CCTAGC
*
36959691 TACAGTATCAACCTAGC
1 TACAGAATCAACCTAGC
36959708 TACAG
1 TACAG
36959713 GATTATAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.52
18 1 0.05
19 9 0.43
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.22
Consensus pattern (17 bp):
TACAGAATCAACCTAGC
Found at i:36961000 original size:25 final size:25
Alignment explanation
Indices: 36960972--36961054 Score: 89
Period size: 25 Copynumber: 3.3 Consensus size: 25
36960962 CTGGAGGCCT
36960972 AGCCTCTTTT-AAT-AACTGGGGCAAA
1 AGCC-CTTTTCAATAAACTGGGGC-AA
**
36960997 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
* * *
36961022 AGCCCTTTTCGATAAACTAGGGCAT
1 AGCCCTTTTCAATAAACTGGGGCAA
36961047 AGCCCTTT
1 AGCCCTTT
36961055 GCACTTCCTC
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
24 5 0.10
25 37 0.73
26 9 0.18
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:36961015 original size:26 final size:25
Alignment explanation
Indices: 36960985--36961054 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
36960975 CTCTTTTAAT
*
36960985 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGC-AAAGCCCTTTTCGATA
36961011 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
36961036 AACTAGGGCATAGCCCTTT
1 AACTGGGGCAAAGCCCTTT
36961055 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 32 0.78
26 9 0.22
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:36961209 original size:25 final size:25
Alignment explanation
Indices: 36961172--36961219 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36961162 ACAATTAAAC
* * *
36961172 CCTAGGGGTAAAATGGTTATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
36961197 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
36961220 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:36963404 original size:12 final size:12
Alignment explanation
Indices: 36963389--36963413 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36963379 CATATTTAAT
36963389 TACTAATAATAA
1 TACTAATAATAA
36963401 TACTAATAATAA
1 TACTAATAATAA
36963413 T
1 T
36963414 TTCATAAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (12 bp):
TACTAATAATAA
Found at i:36965822 original size:12 final size:12
Alignment explanation
Indices: 36965805--36965829 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36965795 TGGGGCCCCG
36965805 AGGGCCCAATCT
1 AGGGCCCAATCT
36965817 AGGGCCCAATCT
1 AGGGCCCAATCT
36965829 A
1 A
36965830 TTAAGTCCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.32, G:0.24, T:0.16
Consensus pattern (12 bp):
AGGGCCCAATCT
Found at i:36966044 original size:32 final size:32
Alignment explanation
Indices: 36966006--36966069 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
36965996 TAGAGAATGC
36966006 CTTTTATGTCAGTAACATCTGCAATAATTCTT
1 CTTTTATGTCAGTAACATCTGCAATAATTCTT
36966038 CTTTTATGTCAGTAACATCTGCAATAATTCTT
1 CTTTTATGTCAGTAACATCTGCAATAATTCTT
36966070 ATGGCAACTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.44
Consensus pattern (32 bp):
CTTTTATGTCAGTAACATCTGCAATAATTCTT
Found at i:36977661 original size:17 final size:17
Alignment explanation
Indices: 36977639--36977673 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
36977629 AATTCCTTTG
36977639 ATTTCTATCATCACCCA
1 ATTTCTATCATCACCCA
36977656 ATTTCTATCATCACCCA
1 ATTTCTATCATCACCCA
36977673 A
1 A
36977674 GCTATAAGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (17 bp):
ATTTCTATCATCACCCA
Found at i:36982935 original size:28 final size:28
Alignment explanation
Indices: 36982893--36982970 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
36982883 AGCATGAGTG
* * *
36982893 TAAATGTGATTTGGGCTTAGTGGCCATA
1 TAAATGTGATTTGGGCCTAATGGCCACA
* *
36982921 TGAATGTGCTTTGGGCCTAATGGCCACA
1 TAAATGTGATTTGGGCCTAATGGCCACA
*
36982949 TAAATGTGA-ATGGGCCTAATGG
1 TAAATGTGATTTGGGCCTAATGG
36982971 GCCATATGAA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 12 0.29
28 30 0.71
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
TAAATGTGATTTGGGCCTAATGGCCACA
Found at i:36983003 original size:28 final size:27
Alignment explanation
Indices: 36982898--36983004 Score: 90
Period size: 28 Copynumber: 3.8 Consensus size: 27
36982888 GAGTGTAAAT
* * *
36982898 GTGATTTGGGCTTAGTGGCCATATGAAT
1 GTGA-TTGGGCCTAATGGCCATATGAAA
* *
36982926 GTGCTTTGGGCCTAATGGCCACAT-AAA
1 GTG-ATTGGGCCTAATGGCCATATGAAA
*
36982953 TGTGAATGGGCCTAATGGGCCATATGAAA
1 -GTGATTGGGCCTAAT-GGCCATATGAAA
* *
36982982 GAGATTGGGCCTAGTGGGCCATA
1 GTGATTGGGCCTAAT-GGCCATA
36983005 CGCATGTATG
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
27 12 0.19
28 49 0.77
29 3 0.05
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (27 bp):
GTGATTGGGCCTAATGGCCATATGAAA
Found at i:36987364 original size:18 final size:18
Alignment explanation
Indices: 36987341--36987381 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
36987331 AGAAAGGTTC
36987341 CTTATGCTTTAGCAGTAG
1 CTTATGCTTTAGCAGTAG
36987359 CTTATGCTTTAGCAGTAG
1 CTTATGCTTTAGCAGTAG
*
36987377 ATTAT
1 CTTAT
36987382 TTTGAGGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (18 bp):
CTTATGCTTTAGCAGTAG
Found at i:36988806 original size:38 final size:40
Alignment explanation
Indices: 36988754--36988831 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
36988744 TATTTTAGTT
36988754 TGTGTCTTTAATTA-TGTCTT-AGTTTGAACATCATTAATA
1 TGTGTCTTTAATTAGTGTCTTAAGTTTG-ACATCATTAATA
*
36988793 TGTGT-TTTAATTATGTGTCTTAATTTTGACATCATTAAT
1 TGTGTCTTTAATTA-GTGTCTTAAGTTTGACATCATTAAT
36988832 GTTTGTCTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
38 8 0.23
39 5 0.14
40 17 0.49
41 5 0.14
ACGTcount: A:0.27, C:0.09, G:0.13, T:0.51
Consensus pattern (40 bp):
TGTGTCTTTAATTAGTGTCTTAAGTTTGACATCATTAATA
Found at i:36988872 original size:23 final size:23
Alignment explanation
Indices: 36988846--36988889 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
36988836 GTCTAAGTTC
36988846 ACATTTAAACATTGCCTTAATAT
1 ACATTTAAACATTGCCTTAATAT
*
36988869 ACATTTAAACATTGTCTTAAT
1 ACATTTAAACATTGCCTTAAT
36988890 GCTGGTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.41
Consensus pattern (23 bp):
ACATTTAAACATTGCCTTAATAT
Found at i:36996692 original size:43 final size:43
Alignment explanation
Indices: 36996613--36996732 Score: 125
Period size: 43 Copynumber: 2.8 Consensus size: 43
36996603 TCTGAACTCA
* * **
36996613 TTCACTGGCATT-TTGCCTACTAGGCTTGAAGCCCGATATCAT
1 TTCACTGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATCAT
* * *
36996655 TTCACTGGCATTATAGCATGCTAGGCTCAAAGGCCGATATTAT
1 TTCACTGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATCAT
* * * * *
36996698 CTCACCGACATTATAGCCTGCTAGGCCCGAAGCCC
1 TTCACTGGCATTATAGCCTGCTAGGCTCAAAGCCC
36996733 AAATATCACA
Statistics
Matches: 63, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
42 12 0.19
43 51 0.81
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (43 bp):
TTCACTGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATCAT
Found at i:36997554 original size:14 final size:15
Alignment explanation
Indices: 36997525--36997554 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36997515 CAAAATTTAG
36997525 ACATGATACTTTCAC
1 ACATGATACTTTCAC
36997540 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
36997554 A
1 A
36997555 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:37004225 original size:27 final size:26
Alignment explanation
Indices: 37004177--37004236 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
37004167 GCGAGGCTGC
*
37004177 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
37004204 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
37004230 CAGATAT
1 CAGATAT
37004237 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:37009892 original size:57 final size:57
Alignment explanation
Indices: 37009804--37009926 Score: 246
Period size: 57 Copynumber: 2.2 Consensus size: 57
37009794 ATACGCTATG
37009804 CTCATACTCTGTAGCGACAATCCCAGAAGCATACCGGCTCAGTCTCAGATACTCAGA
1 CTCATACTCTGTAGCGACAATCCCAGAAGCATACCGGCTCAGTCTCAGATACTCAGA
37009861 CTCATACTCTGTAGCGACAATCCCAGAAGCATACCGGCTCAGTCTCAGATACTCAGA
1 CTCATACTCTGTAGCGACAATCCCAGAAGCATACCGGCTCAGTCTCAGATACTCAGA
37009918 CTCATACTC
1 CTCATACTC
37009927 AGAGCAACTC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 66 1.00
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.22
Consensus pattern (57 bp):
CTCATACTCTGTAGCGACAATCCCAGAAGCATACCGGCTCAGTCTCAGATACTCAGA
Found at i:37009893 original size:27 final size:27
Alignment explanation
Indices: 37009806--37009894 Score: 74
Period size: 27 Copynumber: 3.2 Consensus size: 27
37009796 ACGCTATGCT
37009806 CATACTCTGTAGCGACAATCCCAGAAG
1 CATACTCTGTAGCGACAATCCCAGAAG
* * * **
37009833 CATAC-CGGCTCAGTC-TCAGATACTCAGACT
1 CATACTCTG-T-AG-CGACA-AT-CCCAGAAG
37009863 CATACTCTGTAGCGACAATCCCAGAAG
1 CATACTCTGTAGCGACAATCCCAGAAG
37009890 CATAC
1 CATAC
37009895 CGGCTCAGTC
Statistics
Matches: 45, Mismatches: 10, Indels: 14
0.65 0.14 0.20
Matches are distributed among these distances:
26 2 0.04
27 16 0.36
28 7 0.16
29 7 0.16
30 11 0.24
31 2 0.04
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.20
Consensus pattern (27 bp):
CATACTCTGTAGCGACAATCCCAGAAG
Found at i:37009974 original size:12 final size:12
Alignment explanation
Indices: 37009909--37009967 Score: 68
Period size: 12 Copynumber: 4.9 Consensus size: 12
37009899 TCAGTCTCAG
37009909 ATACTCAGACTC
1 ATACTCAGACTC
*
37009921 ATACTCAGA-GC
1 ATACTCAGACTC
*
37009932 A-ACTCAGTCTC
1 ATACTCAGACTC
37009943 AGATACTCAGACTC
1 --ATACTCAGACTC
37009957 ATACTCAGACT
1 ATACTCAGACT
37009968 ACTACTCCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 6 0.15
11 3 0.08
12 20 0.51
13 1 0.03
14 9 0.23
ACGTcount: A:0.34, C:0.31, G:0.12, T:0.24
Consensus pattern (12 bp):
ATACTCAGACTC
Found at i:37013653 original size:43 final size:41
Alignment explanation
Indices: 37013605--37013714 Score: 98
Period size: 42 Copynumber: 2.6 Consensus size: 41
37013595 CAATGTCAAC
37013605 GTCTCAGACGTAGTCTTACATGTAATCAAACATCGATGCC-ACT
1 GTCTCAGAC-TAGTCTTACATGTAATCAAACA-CGATGCCGA-T
* * * *
37013648 GTCTCAGA-TAGGGTCTTACACGAAATCAGATACGATGCCGAT
1 GTCTCAGACTA--GTCTTACATGTAATCAAACACGATGCCGAT
* *
37013690 GTCCCAGACATGGTCTTACATGTAA
1 GTCTCAGAC-TAGTCTTACATGTAA
37013715 AACAGAAGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
41 2 0.04
42 26 0.48
43 25 0.46
44 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (41 bp):
GTCTCAGACTAGTCTTACATGTAATCAAACACGATGCCGAT
Found at i:37013705 original size:42 final size:42
Alignment explanation
Indices: 37013659--37013761 Score: 118
Period size: 44 Copynumber: 2.4 Consensus size: 42
37013649 TCTCAGATAG
* *
37013659 GGTCTTACACGAAATCAGATA-CGATGCCGATGTCCCAGACAT
1 GGTCTTACACGAAATCAGA-AGCGATGCCAATGCCCCAGACAT
* * **
37013701 GGTCTTACATGTAAAACAGAAGTCGATGCCAATGCCCCAGATGT
1 GGTCTTACACG-AAATCAGAAG-CGATGCCAATGCCCCAGACAT
37013745 GGTCTTACACGAAATCA
1 GGTCTTACACGAAATCA
37013762 CATAACGAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
42 11 0.22
43 12 0.24
44 27 0.54
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.22
Consensus pattern (42 bp):
GGTCTTACACGAAATCAGAAGCGATGCCAATGCCCCAGACAT
Found at i:37021935 original size:45 final size:45
Alignment explanation
Indices: 37021878--37021982 Score: 156
Period size: 45 Copynumber: 2.3 Consensus size: 45
37021868 CATTAGGCAC
*
37021878 CTCAAATGACAACATGGAAACATGTTTAACCATGTACTCCATTTG
1 CTCAAATGACAACATGGAAACATATTTAACCATGTACTCCATTTG
* *
37021923 CTCAAATGACAACATGGAAACATATTTAATCATGTACTCTATTTG
1 CTCAAATGACAACATGGAAACATATTTAACCATGTACTCCATTTG
*
37021968 GTCAAAATGAGCAAC
1 CTC-AAATGA-CAAC
37021983 TAACTTATAG
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
45 44 0.81
46 6 0.11
47 4 0.07
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (45 bp):
CTCAAATGACAACATGGAAACATATTTAACCATGTACTCCATTTG
Found at i:37022916 original size:25 final size:25
Alignment explanation
Indices: 37022887--37022968 Score: 92
Period size: 25 Copynumber: 3.3 Consensus size: 25
37022877 ATTCTCACAT
* *
37022887 GAGCTGTGAACCGGTATACTCATAC
1 GAGCTGTAAATCGGTATACTCATAC
* * * * *
37022912 AAGCTGTAAATAGGTATGCTCACAT
1 GAGCTGTAAATCGGTATACTCATAC
*
37022937 GAGCTGTAAATCAGTATACTCATAC
1 GAGCTGTAAATCGGTATACTCATAC
37022962 GAGCTGT
1 GAGCTGT
37022969 GAAAATGGGC
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
GAGCTGTAAATCGGTATACTCATAC
Found at i:37026379 original size:71 final size:71
Alignment explanation
Indices: 37026304--37026655 Score: 186
Period size: 71 Copynumber: 5.1 Consensus size: 71
37026294 AATCAAAGTC
*
37026304 ATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAAT
1 ATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATATCTTTTATATTTTGACTGAAAT
37026369 TAATTA
66 TAATTA
** * * *** * *
37026375 ATATAATTGTTTATTTTAATAAATTCGGTAA-AATATATACA-ATT-A-ATATTTTATA---TGA
1 ATAT-ATTAATTATATT-CT---TTCCAAAAGAATAT-TA-ATTTTCATATCTTTTATATTTTGA
* * *
37026433 ATCAAATTC--T-
59 CTGAAATTAATTA
* * * *
37026443 -TATATTAATTATATTCTTTCCAAAAGAAGATTAATTTCCATGTCTTTTATATTTTGATTGAAAT
1 ATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATATCTTTTATATTTTGACTGAAAT
37026507 TAATTA
66 TAATTA
** * * * * ** *
37026513 ATATAATTGTTTATATTAATAAATTCGATAA-AATA-T-A--TACA-AT-TAATAT-TTTTTA-T
1 ATAT-ATTAATTATATT-CT---TTCCAAAAGAATATTAATTTTCATATCTTTTATATTTTGACT
** *
37026569 GAAACAAATTC
61 GAAATTAATTA
*
37026580 ATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATATCTTTTATATTTTGACCGAAAT
1 ATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATATCTTTTATATTTTGACTGAAAT
37026645 TAATTA
66 TAATTA
37026651 ATATA
1 ATATA
37026656 ACTGTTTATA
Statistics
Matches: 194, Mismatches: 55, Indels: 64
0.62 0.18 0.20
Matches are distributed among these distances:
61 1 0.01
62 14 0.07
63 9 0.05
64 9 0.05
65 3 0.02
66 19 0.10
67 28 0.14
68 7 0.04
69 10 0.05
70 6 0.03
71 32 0.16
72 19 0.10
73 3 0.02
74 9 0.05
75 9 0.05
76 15 0.08
77 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.47
Consensus pattern (71 bp):
ATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATATCTTTTATATTTTGACTGAAAT
TAATTA
Found at i:37026419 original size:138 final size:138
Alignment explanation
Indices: 37026170--37026732 Score: 889
Period size: 138 Copynumber: 4.1 Consensus size: 138
37026160 AGTTAGAAAA
* * * *
37026170 ATTAATTATATTATTTCCAAAAGAGTATTAA-TTTCTATGTCTTTTATATATTGA-TAGGAATTA
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTC-ATGTCTTTTATATTTTGACT-GAAATTA
* * *
37026233 ATTAATATAATTATTTATATTAATAAATTCATTAAAATATATAAAATTAATATTTTGTATGAATC
64 ATTAATATAATTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATC
*
37026298 AAAGTCATAT
129 AAATTCATAT
37026308 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAAT
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAAT
* * *
37026373 TAATATAATTGTTTATTTTAATAAATTCGGTAAAATATATACAATTAATATTTTATATGAATCAA
66 TAATATAATTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAA
*
37026438 ATTCTTAT
131 ATTCATAT
* * *
37026446 ATTAATTATATTCTTTCCAAAAGAAGATTAATTTCCATGTCTTTTATATTTTGATTGAAATTAAT
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAAT
* *
37026511 TAATATAATTGTTTATATTAATAAATTC-GATAAAATATATACAATTAATATTTTTTATGAAACA
66 TAATATAATTGTTTATATTAATAAATTCAG-TAAAATATATACAATTAATATTTTGTATGAATCA
37026575 AATTCATAT
130 AATTCATAT
* *
37026584 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATATCTTTTATATTTTGACCGAAATTAAT
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAAT
* *
37026649 TAATATAACTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAACCAA
66 TAATATAATTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAA
37026714 ATTCATAT
131 ATTCATAT
37026722 ATTAATTATAT
1 ATTAATTATAT
37026733 CTATGTTCTC
Statistics
Matches: 394, Mismatches: 27, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
137 1 0.00
138 387 0.98
139 6 0.02
ACGTcount: A:0.41, C:0.07, G:0.06, T:0.46
Consensus pattern (138 bp):
ATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAAT
TAATATAATTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAA
ATTCATAT
Found at i:37026562 original size:67 final size:66
Alignment explanation
Indices: 37026353--37026703 Score: 148
Period size: 67 Copynumber: 5.1 Consensus size: 66
37026343 CATGTCTTTT
* *
37026353 ATATTTTGACTGAAATTAATTAATATAATTGTTTATTTTAATAAATTCGGTAAAATATATACAAT
1 ATATTTTGATTGAAATTAATTAATATAATTGTTTA-TTTAATAAATTCGATAAAATATATACAAT
37026418 TA
65 TA
* * * * * *** * *
37026420 ATATTTT-ATATG-AATCAAATTCTTATATTAATTATATTCTTTCCA-AAAGAAGAT-TAATTTC
1 ATATTTTGAT-TGAAAT-TAA-T-TAATA-TAATTGT-TTATTT-AATAAATTCGATAAAATAT-
* * *
37026481 CATGTC-TTTT
58 -AT-ACAATTA
37026491 ATATTTTGATTGAAATTAATTAATATAATTGTTTATATTAATAAATTCGATAAAATATATACAAT
1 ATATTTTGATTGAAATTAATTAATATAATTGTTTAT-TTAATAAATTCGATAAAATATATACAAT
37026556 TA
65 TA
* ** * * * * * *
37026558 ATATTTT-TTATGAAACAAATTCATATATTAATTATATTCTTTCCAA-AAGAAT--ATTAATTTT
1 ATATTTTGAT-TGAAATTAATT-A-ATA-TAATTGT-TTATTT--AATAA-ATTCGATAAAATAT
* *
37026619 CATATC-TTTT
58 -ATA-CAATTA
** *
37026629 ATATTTTGACCGAAATTAATTAATATAACTGTTTATATTAATAAATTC-AGTAAAATATATACAA
1 ATATTTTGATTGAAATTAATTAATATAATTGTTTAT-TTAATAAATTCGA-TAAAATATATACAA
37026693 TTA
64 TTA
37026696 ATATTTTG
1 ATATTTTG
37026704 TATGAACCAA
Statistics
Matches: 199, Mismatches: 53, Indels: 64
0.63 0.17 0.20
Matches are distributed among these distances:
66 11 0.06
67 54 0.27
68 28 0.14
69 22 0.11
70 30 0.15
71 43 0.22
72 11 0.06
ACGTcount: A:0.41, C:0.07, G:0.06, T:0.46
Consensus pattern (66 bp):
ATATTTTGATTGAAATTAATTAATATAATTGTTTATTTAATAAATTCGATAAAATATATACAATT
A
Found at i:37029244 original size:60 final size:60
Alignment explanation
Indices: 37029163--37029305 Score: 241
Period size: 60 Copynumber: 2.4 Consensus size: 60
37029153 CTAATTGATT
* * *
37029163 GGATTTATCCTGGATTGGTAATCCAGATTTGACTCTATATGGAGTTCTTTGTCATATAAA
1 GGATTTAGCCTGGACTGGTAATCCAGATTTGACTCTATAAGGAGTTCTTTGTCATATAAA
* *
37029223 GGATTTAGCATGGACTGGTAATTCAGATTTGACTCTATAAGGAGTTCTTTGTCATATAAA
1 GGATTTAGCCTGGACTGGTAATCCAGATTTGACTCTATAAGGAGTTCTTTGTCATATAAA
37029283 GGATTTAGCCTGGACTGGTAATC
1 GGATTTAGCCTGGACTGGTAATC
37029306 GACAAAGCCC
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 76 1.00
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.37
Consensus pattern (60 bp):
GGATTTAGCCTGGACTGGTAATCCAGATTTGACTCTATAAGGAGTTCTTTGTCATATAAA
Found at i:37042111 original size:60 final size:60
Alignment explanation
Indices: 37042030--37042172 Score: 241
Period size: 60 Copynumber: 2.4 Consensus size: 60
37042020 CTAATTGATT
* * *
37042030 GGATTTATCCTGGATTGGTAATCCAGATTTGACTCTATATGGAGTTCTTTGTCATATAAA
1 GGATTTAGCCTGGACTGGTAATCCAGATTTGACTCTATAAGGAGTTCTTTGTCATATAAA
* *
37042090 GGATTTAGCATGGACTGGTAATTCAGATTTGACTCTATAAGGAGTTCTTTGTCATATAAA
1 GGATTTAGCCTGGACTGGTAATCCAGATTTGACTCTATAAGGAGTTCTTTGTCATATAAA
37042150 GGATTTAGCCTGGACTGGTAATC
1 GGATTTAGCCTGGACTGGTAATC
37042173 GACAAAGCCC
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 76 1.00
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.37
Consensus pattern (60 bp):
GGATTTAGCCTGGACTGGTAATCCAGATTTGACTCTATAAGGAGTTCTTTGTCATATAAA
Found at i:37054532 original size:12 final size:12
Alignment explanation
Indices: 37054515--37054549 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
37054505 CGGCTTGTTC
37054515 ATATTAATTTTT
1 ATATTAATTTTT
37054527 ATATT-ATTTTT
1 ATATTAATTTTT
37054538 ATA-TAATTTTT
1 ATATTAATTTTT
37054549 A
1 A
37054550 CATATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 16 0.73
12 5 0.23
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:37054705 original size:30 final size:30
Alignment explanation
Indices: 37054671--37054733 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
37054661 ACTTAACAAG
*
37054671 CAAATACCTCTAAATTAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
*
37054701 CAAATACCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
37054731 CAA
1 CAA
37054734 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.16, G:0.00, T:0.25
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:37055185 original size:22 final size:20
Alignment explanation
Indices: 37055145--37055185 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
37055135 CTAACCAAAG
*
37055145 AATATATTTAAAACATATAA
1 AATAAATTTAAAACATATAA
37055165 AATAAATTGTAAACACATATA
1 AATAAATT-TAAA-ACATATA
37055186 TAACTATTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 4 0.22
22 7 0.39
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.32
Consensus pattern (20 bp):
AATAAATTTAAAACATATAA
Found at i:37064460 original size:49 final size:49
Alignment explanation
Indices: 37064388--37064663 Score: 297
Period size: 51 Copynumber: 5.5 Consensus size: 49
37064378 TTGGTACGCA
* *
37064388 TAGTAGCCTGCACTTAGTACTACAC-CTGCGACCAATAATCT-AGTACACG
1 TAGTAGCCTGCACTTAGTACTACACAC-GTGACCAATTATCTGA-TACACG
* * * * * *
37064437 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCTGATACACG
* * *
37064488 TAGTAGCCTGCACTAAGTACTACACATGTGACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACG
**
37064537 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGATACACG
* * * * *
37064587 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTT-TTTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCT-GATACACG
37064638 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
37064664 TGCGACCTCA
Statistics
Matches: 191, Mismatches: 28, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
49 70 0.37
50 49 0.26
51 71 0.37
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACACG
Found at i:37064497 original size:100 final size:100
Alignment explanation
Indices: 37064380--37064567 Score: 315
Period size: 100 Copynumber: 1.9 Consensus size: 100
37064370 GAAGCTATTT
* *
37064380 GGTACGCATAGTAGCCTGCACTTAGTACTACACCTGCGACCAATAATCTAG-TACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTAAGTACTACACATGCGACCAATAATC-AGATACACGTAGTAGC
37064444 CTGCACTTAGTACTACACACGTGATCACAGTTTTCG
65 CTGCACTTAGTACTACACACGTGATCACAGTTTTCG
* * *
37064480 GGTACGCATAGTAGCCTGCACTAAGTACTACACATGTGACCAATTATCCGATACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTAAGTACTACACATGCGACCAATAATCAGATACACGTAGTAGCC
37064545 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
37064568 CCTAACCATC
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
99 1 0.01
100 81 0.99
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTAAGTACTACACATGCGACCAATAATCAGATACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:37064658 original size:150 final size:149
Alignment explanation
Indices: 37064388--37064670 Score: 471
Period size: 150 Copynumber: 1.9 Consensus size: 149
37064378 TTGGTACGCA
*
37064388 TAGTAGCCTGCACTTAGTACTACACCTGCGACCAATAATCTAGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACCTGCGACCAACAATCTAGTACACGTAGTAGCCTGCACTTA
*
37064453 GTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTAAGTACTACACATGTG
66 GTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTAAGTACTACACATGCG
37064518 ACCAATTATCCGATACACG
131 ACCAATTATCCGATACACG
* *
37064537 TAGTAGCCTGCACTTAGTACTACACAC-GTGACCTAACCATCT-GATACACGTAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACAC-CTGCGACC-AACAATCTAG-TACACGTAGTAGCCTGCAC
* *
37064600 TTAGTACTACACACGTGATCACAGTTTTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACAT
63 TTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTAAGTACTACACAT
37064665 GCGACC
128 GCGACC
37064671 TCACAATAGA
Statistics
Matches: 125, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
149 31 0.25
150 94 0.75
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (149 bp):
TAGTAGCCTGCACTTAGTACTACACCTGCGACCAACAATCTAGTACACGTAGTAGCCTGCACTTA
GTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTAAGTACTACACATGCG
ACCAATTATCCGATACACG
Found at i:37064671 original size:101 final size:99
Alignment explanation
Indices: 37064388--37064671 Score: 268
Period size: 100 Copynumber: 2.8 Consensus size: 99
37064378 TTGGTACGCA
* * * * *
37064388 TAGTAGCCTGCACTTAGTACTACAC-CTGCGACCAATAAT-CTAGTACACGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTAAGTACTACACAC-GTGACCAATTATCCGA-TACACATAGTAGCCTGCACT
* **** * * * *
37064451 TAGTACTACACACGTGATCAC-AGTTTTCGGGTACGCA
64 TAGTACTACACACGCGA-C-CTAACCATCTGATACACG
* *
37064488 TAGTAGCCTGCACTAAGTACTACACATGTGACCAATTATCCGATACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTAAGTACTACACACGTGACCAATTATCCGATACACATAGTAGCCTGCACTTA
*
37064553 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * ** * *
37064587 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTTGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTAAGTACTACACACGTGA-C-CAATTATCCGATACACATAGTAGCCTGCACT
*
37064652 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
37064672 CACAATAGAT
Statistics
Matches: 155, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
98 1 0.01
99 38 0.25
100 72 0.46
101 44 0.28
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTAAGTACTACACACGTGACCAATTATCCGATACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:37069223 original size:32 final size:32
Alignment explanation
Indices: 37069163--37069234 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
37069153 CGTGTGAGCT
***
37069163 ACACGGGCTAGACTAAGTTGGGTGTGTGGGCC
1 ACACGGGCTAGACTAAGTTGGACATGTGGGCC
* * *
37069195 ACATGGGCTAGGCTAAGTTGGACATGTGGGCT
1 ACACGGGCTAGACTAAGTTGGACATGTGGGCC
37069227 ACACGGGC
1 ACACGGGC
37069235 GTGCCACACA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.21, C:0.19, G:0.39, T:0.21
Consensus pattern (32 bp):
ACACGGGCTAGACTAAGTTGGACATGTGGGCC
Found at i:37075712 original size:18 final size:19
Alignment explanation
Indices: 37075689--37075727 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
37075679 TTTTTCTGTG
37075689 TTTTCTT-TT-CTCTTTTCC
1 TTTTCTTCTTGCT-TTTTCC
37075707 TTTTCTTCTTGCTTTTTCC
1 TTTTCTTCTTGCTTTTTCC
37075726 TT
1 TT
37075728 GTTTTAGGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
19 10 0.53
20 2 0.11
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.72
Consensus pattern (19 bp):
TTTTCTTCTTGCTTTTTCC
Found at i:37078669 original size:7 final size:7
Alignment explanation
Indices: 37078657--37078682 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
37078647 AGGGGGAAAT
37078657 TAAAACA
1 TAAAACA
37078664 TAAAACA
1 TAAAACA
37078671 TAAAACA
1 TAAAACA
37078678 TAAAA
1 TAAAA
37078683 TGAAATTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAAACA
Found at i:37078782 original size:3 final size:3
Alignment explanation
Indices: 37078774--37078815 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
37078764 GAGTTTTGAG
37078774 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
37078816 GGAAAGGTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:37085875 original size:22 final size:20
Alignment explanation
Indices: 37085835--37085876 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
37085825 GTATGTTTAA
37085835 TAAGCATTAAATTATATGTG
1 TAAGCATTAAATTATATGTG
*
37085855 TAAGCATTAAATTATATATG
1 TAAGCATTAAATTATATGTG
37085875 TA
1 TA
37085877 CAAATGCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.12, T:0.40
Consensus pattern (20 bp):
TAAGCATTAAATTATATGTG
Found at i:37086103 original size:42 final size:42
Alignment explanation
Indices: 37086045--37086160 Score: 146
Period size: 42 Copynumber: 2.8 Consensus size: 42
37086035 TAGGGTTATT
* *
37086045 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAT
1 GAGATTACATGTAAGACCATATCTGGGATATGGCATCGATAC
* * *
37086087 GAGACTT-CATGTAAGACCATAGCTGTGCTATTGGCATCGATAC
1 GAGA-TTACATGTAAGACCATATCTGGGATA-TGGCATCGATAC
*
37086130 GAGATTACAT-TAATACCATATCTGGGATATG
1 GAGATTACATGTAAGACCATATCTGGGATATG
37086161 ACATTGGTAC
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.03
42 40 0.65
43 20 0.32
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.29
Consensus pattern (42 bp):
GAGATTACATGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:37089820 original size:43 final size:42
Alignment explanation
Indices: 37089783--37089957 Score: 147
Period size: 43 Copynumber: 4.1 Consensus size: 42
37089773 TAAGAAAATG
* *
37089783 TCTGGGACATTGGCAT-TGTATTGTGATTATGTGTAAGACCATA
1 TCTGGGACATTGGCATCT-TA-TATGATTACGTGTAAGACCATA
*
37089826 TCTGGGACATTGACATCTTATATGATTACGTGTAAGACCATA
1 TCTGGGACATTGGCATCTTATATGATTACGTGTAAGACCATA
* ** * *
37089868 TCTGGGACATTTGCATCGTTA-ATCGATTTTGTGTAAGACCCTG
1 TCTGGGACATTGGCATC-TTATAT-GATTACGTGTAAGACCATA
* * * * * * * *
37089911 TGTGGGATAGTGGTATCGATATGTGATAACATGTAAGACCATA
1 TCTGGGACATTGGCATC-TTATATGATTACGTGTAAGACCATA
37089954 TCTG
1 TCTG
37089958 AGATATGGCA
Statistics
Matches: 105, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
42 37 0.35
43 66 0.63
44 2 0.02
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (42 bp):
TCTGGGACATTGGCATCTTATATGATTACGTGTAAGACCATA
Found at i:37089863 original size:42 final size:43
Alignment explanation
Indices: 37089783--37089878 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 43
37089773 TAAGAAAATG
* * *
37089783 TCTGGGACATTGGCATTGTATTGTGATTATGTGTAAGACCATA
1 TCTGGGACATTGACATTGTATTATGATTACGTGTAAGACCATA
37089826 TCTGGGACATTGACATCT-TA-TATGATTACGTGTAAGACCATA
1 TCTGGGACATTGACAT-TGTATTATGATTACGTGTAAGACCATA
37089868 TCTGGGACATT
1 TCTGGGACATT
37089879 TGCATCGTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
42 31 0.63
43 17 0.35
44 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (43 bp):
TCTGGGACATTGACATTGTATTATGATTACGTGTAAGACCATA
Found at i:37093379 original size:18 final size:19
Alignment explanation
Indices: 37093356--37093391 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
37093346 AACTTGGCAC
*
37093356 CATAA-TCATTTAATTTAA
1 CATAATTCAATTAATTTAA
37093374 CATAATTCAATTAATTTA
1 CATAATTCAATTAATTTA
37093392 CTAAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (19 bp):
CATAATTCAATTAATTTAA
Found at i:37098930 original size:30 final size:29
Alignment explanation
Indices: 37098892--37098949 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
37098882 TCTGAGCCTT
37098892 GGGGAAAAGTGTAAATATGTAAAAGTTTA
1 GGGGAAAAGTGTAAATATGTAAAAGTTTA
* * *
37098921 GGGGCAAAAGTGTAATTTTGTCAAAGTTT
1 GGGG-AAAAGTGTAAATATGTAAAAGTTT
37098950 GAGTTAAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.38, C:0.03, G:0.28, T:0.31
Consensus pattern (29 bp):
GGGGAAAAGTGTAAATATGTAAAAGTTTA
Found at i:37099368 original size:55 final size:54
Alignment explanation
Indices: 37099286--37099540 Score: 233
Period size: 55 Copynumber: 4.8 Consensus size: 54
37099276 ATTAGGGTTT
*
37099286 AAGGATACCATGTAAGACCACGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
37099341 AAGGATACCATGTAAGTCCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * *
37099396 AAAGG-TCCCATGGAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*** * *
37099449 AAGGATACCATGTAAGACCATGTTGAGACATTG-AAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * * *
37099498 AAGGATACCACGTAAGACCATGACAAGTCATGG-AAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
37099541 GTAACCGCGT
Statistics
Matches: 165, Mismatches: 28, Indels: 20
0.77 0.13 0.09
Matches are distributed among these distances:
49 37 0.22
52 7 0.04
53 37 0.22
54 11 0.07
55 69 0.42
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:37099492 original size:108 final size:110
Alignment explanation
Indices: 37099293--37099493 Score: 273
Period size: 108 Copynumber: 1.8 Consensus size: 110
37099283 TTTAAGGATA
* *
37099293 CCATGTAAGACCACGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGT
1 CCATGGAAGACCACGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
37099358 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
* * *
37099403 CCATGGAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGGAAGACCACGCCAAGACATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
** * *
37099465 ACCATGTTGAGACATTGAAATGGTAAGTT
65 ACCATGTCAAGACATGGAAATGATAAGTT
37099494 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGGAAGACCACGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:37099739 original size:16 final size:16
Alignment explanation
Indices: 37099718--37099748 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37099708 ATAAATTTGG
37099718 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
37099734 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
37099749 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:37106609 original size:30 final size:30
Alignment explanation
Indices: 37106568--37106626 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
37106558 TCTGAGCCTT
*
37106568 GGGGAAAAAGTGTAAATATGTAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* * *
37106598 GGGGCAAAAGTGTAATTTTGCAAAAGTTT
1 GGGGAAAAAGTGTAAATATGCAAAAGTTT
37106627 GAGTCAACGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.27, T:0.29
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:37107050 original size:55 final size:53
Alignment explanation
Indices: 37106962--37107216 Score: 261
Period size: 55 Copynumber: 4.8 Consensus size: 53
37106952 ATTAGGGTTT
*
37106962 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA-TTGGTAA-GTTTCTAAGGC
* * * * *
37107017 AAGGATACCATGCAAGACCATGTCAAGATATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * *
37107072 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
*** *
37107125 AAGGATACCATGTAAGACCATGTTGAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * * *
37107174 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
37107217 GTAACCGAGT
Statistics
Matches: 168, Mismatches: 26, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
49 38 0.23
52 7 0.04
53 40 0.24
54 10 0.06
55 69 0.41
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:37107168 original size:108 final size:110
Alignment explanation
Indices: 37106969--37107169 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
37106959 TTTAAGGATA
37106969 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGCAAGGATACCATGCAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGCAAGGATACCATGCAAGA
* *
37107034 CCATGTCAAGATATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
37107079 CCATGTAAGACCATGCCAAGGCATGGCA-TTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTC-TAAGGCAAGGATACCATGCAAG
** *
37107141 ACCATGTTGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
37107170 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.55
109 6 0.07
110 28 0.34
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGCAAGGATACCATGCAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:37107417 original size:16 final size:16
Alignment explanation
Indices: 37107396--37107426 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37107386 ATAAATTTGA
37107396 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
37107412 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
37107427 AGTGCAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:37110254 original size:42 final size:43
Alignment explanation
Indices: 37110192--37110284 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 43
37110182 TTAGGGTTAC
* *
37110192 TGAGATTATGTGTAAGACCATATCTGGGATA-TGGCATCGATA
1 TGAGATTATGTGTAACACCATAGCTGGGATATTGGCATCGATA
*
37110234 TGAGACTT-TGTGTAACACCATAGCTGGGCTATTGGCATCGATA
1 TGAGA-TTATGTGTAACACCATAGCTGGGATATTGGCATCGATA
*
37110277 CGAGATTA
1 TGAGATTA
37110285 CATTCTGACT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
42 27 0.61
43 17 0.39
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (43 bp):
TGAGATTATGTGTAACACCATAGCTGGGATATTGGCATCGATA
Found at i:37123953 original size:16 final size:15
Alignment explanation
Indices: 37123926--37123959 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
37123916 ATAACTAGTA
*
37123926 TATAATTATATTTAT
1 TATAATTATATTAAT
37123941 TATAATATATATTAAT
1 TATAAT-TATATTAAT
37123957 TAT
1 TAT
37123960 TATCAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:37124705 original size:26 final size:25
Alignment explanation
Indices: 37124651--37124712 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
37124641 AAGTTTTCTT
* * *
37124651 TTAAATTTTAATTTGTTTTAATTAT
1 TTAAATTTTAATTTATTTTAACTAG
37124676 TTAAATTTTCAATTTATTTTGAACT-G
1 TTAAATTTT-AATTTATTTT-AACTAG
37124702 TTAACATTTTA
1 TTAA-ATTTTA
37124713 TACTAATTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 9 0.29
26 14 0.45
27 8 0.26
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (25 bp):
TTAAATTTTAATTTATTTTAACTAG
Found at i:37134826 original size:40 final size:40
Alignment explanation
Indices: 37134614--37134819 Score: 353
Period size: 40 Copynumber: 5.2 Consensus size: 40
37134604 AACCCAAGTA
* *
37134614 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
37134653 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
37134693 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
37134733 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
37134773 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
37134813 CCTTCGG
1 CCTTCGG
37134820 ATCTTAGTCC
Statistics
Matches: 159, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
39 13 0.08
40 145 0.91
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:37140660 original size:23 final size:24
Alignment explanation
Indices: 37140642--37140688 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
37140632 CCCTGTACAT
*
37140642 GTATGCTCACATGAGCTGTGAATAA
1 GTATGCTCACATAAGCTGTGAAT-A
37140667 GTATGCTCACATAAGCTGTGAA
1 GTATGCTCACATAAGCTGTGAA
37140689 AATGGGTCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (24 bp):
GTATGCTCACATAAGCTGTGAATA
Found at i:37146691 original size:16 final size:17
Alignment explanation
Indices: 37146661--37146694 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
37146651 TGTTCTTGCC
*
37146661 GAAACATAAATAAGAAA
1 GAAACATAAAAAAGAAA
37146678 GAAA-ATAAAAAAGAAA
1 GAAACATAAAAAAGAAA
37146694 G
1 G
37146695 CTAGGGTTCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.74, C:0.03, G:0.15, T:0.09
Consensus pattern (17 bp):
GAAACATAAAAAAGAAA
Found at i:37151256 original size:29 final size:29
Alignment explanation
Indices: 37151171--37151269 Score: 153
Period size: 29 Copynumber: 3.4 Consensus size: 29
37151161 TGTGTATACC
*
37151171 ATGTGAAAAGGGATAGCTTTTGCTATCGA
1 ATGTGAAAAGGGATAGCTTTGGCTATCGA
* *
37151200 ATGTAAAAAGGGGATAGCTTAGGCTATCGA
1 ATGTGAAAA-GGGATAGCTTTGGCTATCGA
*
37151230 ATGTGAAAAGGGATAGCTTTGGGTATCGA
1 ATGTGAAAAGGGATAGCTTTGGCTATCGA
37151259 ATGTGAAAAGG
1 ATGTGAAAAGG
37151270 TTAGGTATAC
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
29 37 0.59
30 26 0.41
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.26
Consensus pattern (29 bp):
ATGTGAAAAGGGATAGCTTTGGCTATCGA
Found at i:37151304 original size:33 final size:33
Alignment explanation
Indices: 37151262--37151421 Score: 180
Period size: 32 Copynumber: 4.9 Consensus size: 33
37151252 GTATCGAATG
*
37151262 TGAAAAGGTTAGGTATACTTTCTGTATACCACA
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACA
* * * *
37151295 TGAAAAGGTTATGTACACTTTGTGTGTA-CACT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACA
* * *
37151327 TGAAAAGGTTATGTACACTTTGTGTATA-CACT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACA
** *
37151359 TGAAAAGGAAAGGTATACTTTGTGTATACCATA
1 TGAAAAGGTTAGGTATACTTTGTGTATACCACA
** *
37151392 TGAAAAGGAAAGGTATACTTTGTGTGTACC
1 TGAAAAGGTTAGGTATACTTTGTGTATACC
37151422 CCTCAGAAAG
Statistics
Matches: 113, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 58 0.51
33 55 0.49
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (33 bp):
TGAAAAGGTTAGGTATACTTTGTGTATACCACA
Found at i:37151441 original size:97 final size:97
Alignment explanation
Indices: 37151262--37151441 Score: 209
Period size: 97 Copynumber: 1.9 Consensus size: 97
37151252 GTATCGAATG
** ** * *
37151262 TGAAAAGGTTAGGTATACTTTCTGTATACCACATGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGAAAGGTATACTTTCTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACC
* ** **
37151327 TGAAAAGGTTATGTACACTTTGTGTATACACT
66 TCAAAAGGAAACATACACTTTGTGTATACACT
* * * *
37151359 TGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTGTACCCC
1 TGAAAAGGAAAGGTATACTTTCTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACC
37151424 TCAGAAA-GAAACATACAC
66 TCA-AAAGGAAACATACAC
37151442 CTCGAGTGTA
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
97 64 0.96
98 3 0.04
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (97 bp):
TGAAAAGGAAAGGTATACTTTCTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACC
TCAAAAGGAAACATACACTTTGTGTATACACT
Found at i:37151629 original size:54 final size:54
Alignment explanation
Indices: 37151547--37151654 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
37151537 AACTTATCTA
37151547 TACTTAGTTGATACTAATATGATGCATATGATTGTCCTGTTTGCATGAGTGGTT
1 TACTTAGTTGATACTAATATGATGCATATGATTGTCCTGTTTGCATGAGTGGTT
37151601 TACTTAGTTGATACTAATATGATGCATATGATTGTCCTGTTTGCATGAGTGGTT
1 TACTTAGTTGATACTAATATGATGCATATGATTGTCCTGTTTGCATGAGTGGTT
37151655 GTGCTAAGAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.24, C:0.11, G:0.22, T:0.43
Consensus pattern (54 bp):
TACTTAGTTGATACTAATATGATGCATATGATTGTCCTGTTTGCATGAGTGGTT
Found at i:37153098 original size:30 final size:31
Alignment explanation
Indices: 37153039--37153098 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
37153029 AGGACTCGGG
* *
37153039 CATGTCCCAATCCACATGGACTTGTGTGACCA
1 CATGGCCCAATCCACACGGAC-TGTGTGACCA
*
37153071 CATGGCCCAATCCACACGGGC-GTGTGAC
1 CATGGCCCAATCCACACGGACTGTGTGAC
37153099 TCTCCGAAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 7 0.28
32 18 0.72
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.20
Consensus pattern (31 bp):
CATGGCCCAATCCACACGGACTGTGTGACCA
Found at i:37154562 original size:43 final size:43
Alignment explanation
Indices: 37154417--37154573 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
37154407 TGTGTTATCG
** * *
37154417 TGTAAGACCATGTCTGGGACGTTGGCATCAACT-TATGATTTACA
1 TGTAAGACCACATCTAGGACGTTGGCATCAA-TATTTGA-TTACA
* * * ** * *
37154461 TGTAAGACCATATCTGGGACATTGGCAT-TGTATTTGATTTCG
1 TGTAAGACCACATCTAGGACGTTGGCATCAATATTTGATTACA
37154503 TGTAAGACC-CTATCTAGGACAG-TGGCATCAATATTTGATTACA
1 TGTAAGACCAC-ATCTAGGAC-GTTGGCATCAATATTTGATTACA
*
37154546 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACATCTAGGACGTTGGCAT
37154574 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
42 28 0.30
43 37 0.40
44 27 0.29
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACATCTAGGACGTTGGCATCAATATTTGATTACA
Found at i:37154577 original size:85 final size:86
Alignment explanation
Indices: 37154414--37154577 Score: 217
Period size: 85 Copynumber: 1.9 Consensus size: 86
37154404 ATATGTGTTA
* * * *
37154414 TCGTGTAAGACCATGTCTGGGACGTTGGCATCAACTTATGATTTACATGTAAGACCATATCTGGG
1 TCGTGTAAGACCATATCTAGGACGTTGGCATCAACTTATGATTTACATGTAAGACCACATCTAGG
37154479 ACATTGGCATTGTATTTGATT
66 ACATTGGCATTGTATTTGATT
* * *
37154500 TCGTGTAAGACCCTATCTAGGACAG-TGGCATCAA-TATTTGA-TTACATGTAAGACCACGTCTA
1 TCGTGTAAGACCATATCTAGGAC-GTTGGCATCAACT-TATGATTTACATGTAAGACCACATCTA
*
37154562 GGACGTTGGCATTGTA
64 GGACATTGGCATTGTA
37154578 CGAGCTTTTC
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 34 0.50
86 33 0.49
87 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (86 bp):
TCGTGTAAGACCATATCTAGGACGTTGGCATCAACTTATGATTTACATGTAAGACCACATCTAGG
ACATTGGCATTGTATTTGATT
Found at i:37155138 original size:23 final size:22
Alignment explanation
Indices: 37155097--37155141 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
37155087 TATTTAGCCA
*
37155097 TGTGATATGGCTTGGTTTTGGT
1 TGTGATATGGCTTGATTTTGGT
*
37155119 TGTGATTATGGTTTGATTTTGGT
1 TGTGA-TATGGCTTGATTTTGGT
37155142 ATATGAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.11, C:0.02, G:0.33, T:0.53
Consensus pattern (22 bp):
TGTGATATGGCTTGATTTTGGT
Found at i:37163445 original size:26 final size:26
Alignment explanation
Indices: 37163410--37163460 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
37163400 ATGTGAAAAG
*
37163410 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
37163436 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
37163461 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:37163506 original size:104 final size:105
Alignment explanation
Indices: 37163226--37163597 Score: 633
Period size: 104 Copynumber: 3.6 Consensus size: 105
37163216 TTGTATATAA
** *
37163226 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
37163291 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
37163331 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
37163396 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATT-CCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
37163435 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
37163499 TTGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
37163539 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
37163598 ATAACGGTTA
Statistics
Matches: 256, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
103 24 0.09
104 135 0.53
105 97 0.38
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:37170483 original size:105 final size:105
Alignment explanation
Indices: 37170347--37170554 Score: 389
Period size: 105 Copynumber: 2.0 Consensus size: 105
37170337 TTGTATATAA
**
37170347 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
37170412 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
37170452 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
37170517 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCC
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCC
37170555 TATGTGCGTG
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 100 1.00
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.32
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:37170589 original size:62 final size:62
Alignment explanation
Indices: 37170492--37170616 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
37170482 ATTGGTGGTG
37170492 CTATGTGCGTGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCC
1 CTATGTGCGTGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCC
37170554 CTATGTGCGTGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCC
1 CTATGTGCGTGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCC
37170616 C
1 C
37170617 CGAGGGGTTG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (62 bp):
CTATGTGCGTGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCC
Found at i:37170676 original size:167 final size:166
Alignment explanation
Indices: 37170387--37170720 Score: 634
Period size: 167 Copynumber: 2.0 Consensus size: 166
37170377 ATTGGTGGTG
37170387 CTATGTGCGTGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
1 CTATGTGCGTGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
37170452 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
66 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
37170517 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCC
131 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCC
37170554 CTATGTGCGTGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
1 CTATGTGCGTGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
37170619 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
66 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
37170683 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCC
130 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCC
37170720 C
1 C
37170721 CGAGGGGTTG
Statistics
Matches: 165, Mismatches: 1, Indels: 3
0.98 0.01 0.02
Matches are distributed among these distances:
166 28 0.17
167 136 0.82
168 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.31
Consensus pattern (166 bp):
CTATGTGCGTGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCC
Found at i:37170739 original size:104 final size:105
Alignment explanation
Indices: 37170558--37170781 Score: 396
Period size: 104 Copynumber: 2.1 Consensus size: 105
37170548 ATTCCCCTAT
*
37170558 GTGCGTGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGG
1 GTGCGAGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGG
* **
37170623 GTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAA
66 GTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAA
*
37170663 GTGCGATATCCACCATATCTTTGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGG
1 GTGCGAGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGG
37170727 GTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAA
66 GTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAA
37170767 GTGCGAGATCCACCA
1 GTGCGAGATCCACCA
37170782 ATAACGGTTA
Statistics
Matches: 113, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
104 85 0.75
105 28 0.25
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (105 bp):
GTGCGAGATCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGG
GTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAA
Found at i:37224901 original size:47 final size:47
Alignment explanation
Indices: 37224848--37225251 Score: 655
Period size: 47 Copynumber: 8.6 Consensus size: 47
37224838 TATTTGAATA
*
37224848 AATGTGAAAGTGTATATATGTTATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37224895 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37224942 AATGTGAAAGTGTATATATATGTGGTAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37224991 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37225038 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37225085 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37225132 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
37225179 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
37225226 GATGAGAAAGTGTATAAATGTGATAA
1 AATGTGAAAGTGTATATATGTGATAA
37225252 ATCCCGAAGG
Statistics
Matches: 337, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 293 0.87
49 44 0.13
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:37226875 original size:119 final size:120
Alignment explanation
Indices: 37226664--37226974 Score: 507
Period size: 119 Copynumber: 2.6 Consensus size: 120
37226654 GAGAATTGAG
37226664 AGTGATGTATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
*
37226729 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAG-TCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
37226783 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCG
1 AGTGATGTATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
37226848 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * ** * * * *
37226903 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATGTATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
37226968 AAGAGCA
66 AAGAGCA
37226975 ATTATGCTGG
Statistics
Matches: 177, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
119 96 0.54
120 81 0.46
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (120 bp):
AGTGATGTATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:37226986 original size:40 final size:40
Alignment explanation
Indices: 37226664--37226974 Score: 498
Period size: 40 Copynumber: 7.8 Consensus size: 40
37226654 GAGAATTGAG
*
37226664 AGTGATGTATCCGAGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
37226704 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
37226744 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
37226783 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
37226823 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
37226863 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
37226903 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
37226943 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
37226975 ATTATGCTGG
Statistics
Matches: 253, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 39 0.15
40 214 0.85
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:37230069 original size:47 final size:47
Alignment explanation
Indices: 37230015--37230419 Score: 657
Period size: 47 Copynumber: 8.6 Consensus size: 47
37230005 TATTTGAATA
37230015 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37230062 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37230109 AATGTGAAAATGTATATATATGTGGTAAGGCCTAATGGCCGATGTGATG
1 AATGTG-AAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37230158 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37230205 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTTATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37230252 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37230299 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
37230346 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37230393 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
37230420 TCCCGAAGGG
Statistics
Matches: 336, Mismatches: 20, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 290 0.86
48 6 0.02
49 40 0.12
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:37232854 original size:40 final size:41
Alignment explanation
Indices: 37232799--37232967 Score: 229
Period size: 40 Copynumber: 4.2 Consensus size: 41
37232789 CGGATATAGT
*
37232799 CCGGATATAGTC-GCTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCAGCTAGCACAAATGCCTTCGGGACTTAGC
*
37232839 CCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGTCAGCTAGCACAAATGCCTTCGGGACTTAGC
* * *
37232879 CCGGATATAG-CAACTAGCACGAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTCAGCTAGCACAAATGCCTTCGGGA-CTTAGC
* * *
37232919 CCGGTTATAGTCACCTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAGCTAGCACAAATGCCTTCGGGACTTAGC
37232960 CCGGATAT
1 CCGGATAT
37232968 CATTCGAATA
Statistics
Matches: 113, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.69
41 29 0.26
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (41 bp):
CCGGATATAGTCAGCTAGCACAAATGCCTTCGGGACTTAGC
Found at i:37240940 original size:37 final size:38
Alignment explanation
Indices: 37240890--37241055 Score: 124
Period size: 40 Copynumber: 4.2 Consensus size: 38
37240880 CGGATATAGT
*
37240890 CCGGATATAGTCGCT-ATAAATGCCGTCGGGACTTAGC
1 CCGGATATAGTCGCTAACAAATGCCGTCGGGACTTAGC
* *
37240927 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGTCGCTA--ACAAATGCCGTCGGGACTTAGC
* * *
37240967 CCGGATATAGCAACTCGC--ACGAATGCCTTC-GGATCTTAGT
1 CCGGATATAG----TCGCTAACAAATGCCGTCGGGA-CTTAGC
* * * *
37241007 CCGGTTATAGTCACCTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTC-GCTA--ACAAATGCCGTCGGGACTTAGC
37241048 CCGGATAT
1 CCGGATAT
37241056 CATTCGAATA
Statistics
Matches: 103, Mismatches: 12, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
36 2 0.02
37 16 0.16
39 2 0.02
40 54 0.52
41 22 0.21
42 3 0.03
44 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (38 bp):
CCGGATATAGTCGCTAACAAATGCCGTCGGGACTTAGC
Found at i:37241046 original size:41 final size:41
Alignment explanation
Indices: 37240907--37241055 Score: 187
Period size: 40 Copynumber: 3.7 Consensus size: 41
37240897 TAGTCGCTAT
* *
37240907 AAATGCCGTCGGGACTTAGCCCGGATATAGTC-GCTAGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAGTCAACTAGCAC
* *
37240947 AAATGCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAGTCAACTAGCAC
* * * *
37240987 GAATGCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCAC
1 AAATGCCTTCGGGA-CTTAGCCCGGATATAGTCAACTAGCAC
*
37241028 AAAAGCCTTCGGGACTTAGCCCGGATAT
1 AAATGCCTTCGGGACTTAGCCCGGATAT
37241056 CATTCGAATA
Statistics
Matches: 91, Mismatches: 14, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 57 0.63
41 28 0.31
42 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (41 bp):
AAATGCCTTCGGGACTTAGCCCGGATATAGTCAACTAGCAC
Found at i:37244028 original size:129 final size:130
Alignment explanation
Indices: 37243858--37244110 Score: 384
Period size: 129 Copynumber: 2.0 Consensus size: 130
37243848 AAAAATTTTC
* * *
37243858 TTTAAAACGAAGGCAACGTTCGATGTTTGGTAACTCAGGGAATCGTGCCCTATCGTGCTGAGTTG
1 TTTAAAACGAAGGCAACGTTCGATGTTTGGCAACTCAGGGAATCGTGCCCTATCATACTGAGTTG
*
37243923 CAATTTCCTGTTTGTTCAAAATAATAGAATAAT-CCTTTAGAATTTCACTCATG-TCTTTAAAAA
66 CAATTTCCCGTTTGTTCAAAATAATAGAAT-ATCCCTTTAGAATTTCACTCATGTTCTTTAAAAA
37243986 T
130 T
* * ** *
37243987 TTTAAAACGAAGGTAATGTTCGATGTTTGGCAACTTGGGGAATCGTGCCCTATCATACTGGGTTG
1 TTTAAAACGAAGGCAACGTTCGATGTTTGGCAACTCAGGGAATCGTGCCCTATCATACTGAGTTG
* *
37244052 CAATTTCCCGTTTGTTCAAAATGATCGAATATCCCTTTAGAATTTCACTCATGTTCTTT
66 CAATTTCCCGTTTGTTCAAAATAATAGAATATCCCTTTAGAATTTCACTCATGTTCTTT
37244111 GAATTCTAAA
Statistics
Matches: 111, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
128 2 0.02
129 104 0.94
130 5 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (130 bp):
TTTAAAACGAAGGCAACGTTCGATGTTTGGCAACTCAGGGAATCGTGCCCTATCATACTGAGTTG
CAATTTCCCGTTTGTTCAAAATAATAGAATATCCCTTTAGAATTTCACTCATGTTCTTTAAAAAT
Found at i:37247217 original size:28 final size:28
Alignment explanation
Indices: 37247197--37247274 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
37247187 GTGACAGAGT
* **
37247197 CACCAAATACAGTTATTTGTGGCAGTCC
1 CACCAAATACAGATATTTGTGGCAGAAC
37247225 CACCAGAAT-CAGATATTTGTGGCAGAAC
1 CACCA-AATACAGATATTTGTGGCAGAAC
*
37247253 CACCAAAAACAGATATTTGTGG
1 CACCAAATACAGATATTTGTGG
37247275 TATAGCCACC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
27 2 0.05
28 39 0.89
29 3 0.07
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (28 bp):
CACCAAATACAGATATTTGTGGCAGAAC
Found at i:37247283 original size:28 final size:28
Alignment explanation
Indices: 37247197--37247285 Score: 90
Period size: 28 Copynumber: 3.2 Consensus size: 28
37247187 GTGACAGAGT
* * *
37247197 CACCAAATACAGTTATTTGTGGCAGT-CC
1 CACCAAAAACAGATATTTGTGGCA-TAAC
* * *
37247225 CACCAGAATCAGATATTTGTGGCAGAAC
1 CACCAAAAACAGATATTTGTGGCATAAC
* *
37247253 CACCAAAAACAGATATTTGTGGTATAGC
1 CACCAAAAACAGATATTTGTGGCATAAC
37247281 CACCA
1 CACCA
37247286 GAACGCTTCC
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.24
Consensus pattern (28 bp):
CACCAAAAACAGATATTTGTGGCATAAC
Found at i:37255009 original size:28 final size:27
Alignment explanation
Indices: 37254960--37255074 Score: 160
Period size: 28 Copynumber: 4.2 Consensus size: 27
37254950 AACATGGCTT
* *
37254960 CCAGAACAGATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
37254986 CCAGATACAGATATTTGTGGCAGAGCCA
1 CCAGA-ACAGATATTTGTGGCAGAGCCA
*
37255014 CCAGAATCAGATATTTGTGGCAGAACCA
1 CCAGAA-CAGATATTTGTGGCAGAGCCA
*
37255042 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATATTTGTGGCAGAGCCA
37255070 CCAGA
1 CCAGA
37255075 GCGCTTCCTC
Statistics
Matches: 80, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
26 5 0.06
27 9 0.11
28 64 0.80
29 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:37257562 original size:27 final size:27
Alignment explanation
Indices: 37257524--37257676 Score: 225
Period size: 27 Copynumber: 5.7 Consensus size: 27
37257514 TACCTGAACT
*
37257524 CTCATGTGATAAAATGACGATTTTGCC
1 CTCATGTGATAAAATGACGATTTTACC
37257551 CTCATGTGATAAAATGACGATTTTACC
1 CTCATGTGATAAAATGACGATTTTACC
* * *
37257578 CTTATGTGATAAAATGATGATTTTGCC
1 CTCATGTGATAAAATGACGATTTTACC
*
37257605 CTCATGTGATAAAATGATGATTTTACC
1 CTCATGTGATAAAATGACGATTTTACC
* * *
37257632 CTCATGTGATAAAATAATGATTTTTCC
1 CTCATGTGATAAAATGACGATTTTACC
*
37257659 TTCATGTGATAAAATGAC
1 CTCATGTGATAAAATGAC
37257677 CAAAATACCC
Statistics
Matches: 115, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.37
Consensus pattern (27 bp):
CTCATGTGATAAAATGACGATTTTACC
Found at i:37257686 original size:54 final size:54
Alignment explanation
Indices: 37257524--37257676 Score: 252
Period size: 54 Copynumber: 2.8 Consensus size: 54
37257514 TACCTGAACT
*
37257524 CTCATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGACGATTTTACC
1 CTCATGTGATAAAATGATGATTTTGCCCTCATGTGATAAAATGACGATTTTACC
* *
37257578 CTTATGTGATAAAATGATGATTTTGCCCTCATGTGATAAAATGATGATTTTACC
1 CTCATGTGATAAAATGATGATTTTGCCCTCATGTGATAAAATGACGATTTTACC
* * *
37257632 CTCATGTGATAAAATAATGATTTTTCCTTCATGTGATAAAATGAC
1 CTCATGTGATAAAATGATGATTTTGCCCTCATGTGATAAAATGAC
37257677 CAAAATACCC
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.37
Consensus pattern (54 bp):
CTCATGTGATAAAATGATGATTTTGCCCTCATGTGATAAAATGACGATTTTACC
Found at i:37257698 original size:27 final size:27
Alignment explanation
Indices: 37257668--37257781 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
37257658 CTTCATGTGA
* *
37257668 TAAAATGACCAAAATACCCCCACAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* *
37257695 TAAAATGACTGAAAGACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* *
37257722 TAAAATGATCGAAATACCCCTATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * * * *
37257749 TAAAATGACTGTAATACCACGATAAGG
1 TAAAATGACCGAAATACCCCCATAGGG
37257776 TAAAAT
1 TAAAAT
37257782 CATAGATTTT
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCCATAGGG
Found at i:37257699 original size:81 final size:81
Alignment explanation
Indices: 37257529--37257703 Score: 192
Period size: 81 Copynumber: 2.2 Consensus size: 81
37257519 GAACTCTCAT
* *
37257529 GTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGACGATTTTACCCTTATGTGATAAAATG
1 GTGATAAAATGACGATTTTACCCTCATGTGATAAAATAACGATTTTACCCTTATGTGATAAAATG
** *** * * *
37257594 ATGATTTTGCCCTCAT
66 ACCAAAATACCCCCAA
* * *
37257610 GTGATAAAATGATGATTTTACCCTCATGTGATAAAATAATGATTTT-TCCTTCATGTGATAAAAT
1 GTGATAAAATGACGATTTTACCCTCATGTGATAAAATAACGATTTTACCCTT-ATGTGATAAAAT
37257674 GACCAAAATACCCCCACA
65 GACCAAAATACCCCCA-A
*
37257692 G-GGTAAAATGAC
1 GTGATAAAATGAC
37257704 TGAAAGACCC
Statistics
Matches: 77, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
80 4 0.05
81 72 0.94
82 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.33
Consensus pattern (81 bp):
GTGATAAAATGACGATTTTACCCTCATGTGATAAAATAACGATTTTACCCTTATGTGATAAAATG
ACCAAAATACCCCCAA
Found at i:37257778 original size:54 final size:54
Alignment explanation
Indices: 37257668--37257781 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
37257658 CTTCATGTGA
* *
37257668 TAAAATGACCAAAATACCCCCACAGGGTAAAATGACTGAAAGACCCCCATAGGG
1 TAAAATGACCAAAATACCCCCACAGGGTAAAATGACTGAAAGACCACCATAAGG
* * * * * * *
37257722 TAAAATGATCGAAATACCCCTATAGGGTAAAATGACTGTAATACCACGATAAGG
1 TAAAATGACCAAAATACCCCCACAGGGTAAAATGACTGAAAGACCACCATAAGG
37257776 TAAAAT
1 TAAAAT
37257782 CATAGATTTT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (54 bp):
TAAAATGACCAAAATACCCCCACAGGGTAAAATGACTGAAAGACCACCATAAGG
Found at i:37258152 original size:18 final size:19
Alignment explanation
Indices: 37258125--37258175 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
37258115 TATTTGCATT
37258125 CTGCACTGATTACT-ATTA
1 CTGCACTGATTACTGATTA
* * *
37258143 CTGCATTGATCA-TGGTTA
1 CTGCACTGATTACTGATTA
37258161 CTGCACTGATTACTG
1 CTGCACTGATTACTG
37258176 CAACTGCCAC
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 1 0.04
18 23 0.88
19 2 0.08
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.37
Consensus pattern (19 bp):
CTGCACTGATTACTGATTA
Found at i:37266887 original size:12 final size:12
Alignment explanation
Indices: 37266872--37266897 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37266862 ATTTAACCTA
37266872 GGGTTTATATTT
1 GGGTTTATATTT
37266884 GGGTTTATATTT
1 GGGTTTATATTT
37266896 GG
1 GG
37266898 AAAAATACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (12 bp):
GGGTTTATATTT
Found at i:37267779 original size:93 final size:93
Alignment explanation
Indices: 37267620--37267790 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
37267610 GGATGGTTGA
* * *
37267620 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
37267685 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
37267713 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
*
37267778 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
37267791 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37267793 original size:46 final size:46
Alignment explanation
Indices: 37267624--37267795 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
37267614 GGTTGAGCAT
* * *
37267624 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
37267670 CTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
37267715 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
37267763 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37267796 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 58 0.56
47 27 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:37270795 original size:182 final size:182
Alignment explanation
Indices: 37270479--37270854 Score: 508
Period size: 182 Copynumber: 2.1 Consensus size: 182
37270469 GAATCAAAAT
* * * * *
37270479 AGGGACACACGATTGTGTCCCAACCCGTGTCCTCACCCGTGTAACTCACTAAGTAGGGTCACAAT
1 AGGGACACACGATCGTGTCCCAACCCATGTCCTCACCAGTGTAACTCACTAAATAGGGTCACAAG
* * * *
37270544 GTCATGCCATTCGCCCATGTGCCAGGCTGTGTAACTCTCGAAATAGCCCCACACGCCTGTGCTCC
66 GCCATGCCATTCGCCCATGTGCCAGGCTGTGTAACTCTCGAAATAACCCCACAAGCCTATGC-CC
* *
37270609 AGGCCATGTGTTAGGCCATGTAACTGCCTGACTTGTGTGCAATAAAACCTACA
130 AGGCCATGTGTTAGGCCATGTAACTACCTGACTTGTATGCAATAAAACCTACA
*** *
37270662 AGGGACACACGATCGTGTCCCAACCCATGTCCTCA-CAGTGTAACTCACTAAATAGGGTTGTACG
1 AGGGACACACGATCGTGTCCCAACCCATGTCCTCACCAGTGTAACTCACTAAATAGGGTCACAAG
* *
37270726 GCCATGTCTCA-T-GCCCGTGTGCCAGGCTGTGTAACTCTTGAAATAACCCCACAAGCCCATATG
66 GCCATG-C-CATTCGCCCATGTGCCAGGCTGTGTAACTCTCGAAATAACCCCACAAG-CC-TATG
* *
37270789 -CCAGGCCATGTGTTAGGCCATGTTACTACCTGACTTGTATGCAATAAGACCTACA
127 CCCAGGCCATGTGTTAGGCCATGTAACTACCTGACTTGTATGCAATAAAACCTACA
37270844 AGGGACACACG
1 AGGGACACACG
37270855 GCTGAGTCAC
Statistics
Matches: 170, Mismatches: 19, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
182 128 0.75
183 37 0.22
184 5 0.03
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (182 bp):
AGGGACACACGATCGTGTCCCAACCCATGTCCTCACCAGTGTAACTCACTAAATAGGGTCACAAG
GCCATGCCATTCGCCCATGTGCCAGGCTGTGTAACTCTCGAAATAACCCCACAAGCCTATGCCCA
GGCCATGTGTTAGGCCATGTAACTACCTGACTTGTATGCAATAAAACCTACA
Found at i:37272747 original size:11 final size:11
Alignment explanation
Indices: 37272731--37272756 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37272721 TAGAAGAGAC
37272731 GAAACAGGGGA
1 GAAACAGGGGA
37272742 GAAACAGGGGA
1 GAAACAGGGGA
37272753 GAAA
1 GAAA
37272757 GAAGAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.08, G:0.42, T:0.00
Consensus pattern (11 bp):
GAAACAGGGGA
Found at i:37273440 original size:18 final size:18
Alignment explanation
Indices: 37273417--37273465 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
37273407 ATGTGAGGTA
*
37273417 AGTATTAATATTAGTATT
1 AGTATTATTATTAGTATT
37273435 AGTATTATTATTAGTATT
1 AGTATTATTATTAGTATT
*
37273453 ATTATTATTATTA
1 AGTATTATTATTA
37273466 TGAGTGGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (18 bp):
AGTATTATTATTAGTATT
Found at i:37273445 original size:3 final size:3
Alignment explanation
Indices: 37273419--37273466 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
37273409 GTGAGGTAAG
* * * *
37273419 TAT TAA TAT TAG TAT TAG TAT TAT TAT TAG TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
37273467 GAGTGGGAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:37273466 original size:12 final size:12
Alignment explanation
Indices: 37273419--37273466 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
37273409 GTGAGGTAAG
* *
37273419 TATTAATATTAG
1 TATTAGTATTAT
37273431 TATTAGTATTAT
1 TATTAGTATTAT
37273443 TATTAGTATTAT
1 TATTAGTATTAT
*
37273455 TATTATTATTAT
1 TATTAGTATTAT
37273467 GAGTGGGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (12 bp):
TATTAGTATTAT
Found at i:37273660 original size:24 final size:24
Alignment explanation
Indices: 37273606--37273677 Score: 67
Period size: 24 Copynumber: 2.9 Consensus size: 24
37273596 TGTGTGAAGT
*
37273606 TGTGAAATAATTATTG-ATTG-AAA
1 TGTGAAA-AATGATTGAATTGAAAA
*
37273629 GGTGGAAAAATGATTGAATTGAAAA
1 TGT-GAAAAATGATTGAATTGAAAA
37273654 TGTGAAAAATTGTAATTGAATTGA
1 TGTGAAAAA-TG--ATTGAATTGA
37273678 GAATATATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
23 9 0.22
24 14 0.35
25 7 0.17
27 10 0.25
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (24 bp):
TGTGAAAAATGATTGAATTGAAAA
Found at i:37273880 original size:37 final size:39
Alignment explanation
Indices: 37273821--37273916 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
37273811 CGGATAGATT
* * * *
37273821 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
37273858 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
37273897 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
37273917 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:37274571 original size:13 final size:13
Alignment explanation
Indices: 37274555--37274583 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
37274545 GTGAATGTGA
37274555 AATGAATTGGTTG
1 AATGAATTGGTTG
37274568 AATGAATTGGTTG
1 AATGAATTGGTTG
37274581 AAT
1 AAT
37274584 TGGATATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.28, T:0.38
Consensus pattern (13 bp):
AATGAATTGGTTG
Found at i:37280440 original size:11 final size:11
Alignment explanation
Indices: 37280424--37280449 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37280414 TAGAAGAGAC
37280424 GAAACAGGGGA
1 GAAACAGGGGA
37280435 GAAACAGGGGA
1 GAAACAGGGGA
37280446 GAAA
1 GAAA
37280450 GAAGAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.08, G:0.42, T:0.00
Consensus pattern (11 bp):
GAAACAGGGGA
Found at i:37281135 original size:18 final size:18
Alignment explanation
Indices: 37281112--37281160 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
37281102 ATGTGAGATA
*
37281112 AGTATTAATATTAGTATT
1 AGTATTATTATTAGTATT
37281130 AGTATTATTATTAGTATT
1 AGTATTATTATTAGTATT
*
37281148 ATTATTATTATTA
1 AGTATTATTATTA
37281161 TTATGAGTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (18 bp):
AGTATTATTATTAGTATT
Found at i:37281140 original size:3 final size:3
Alignment explanation
Indices: 37281114--37281164 Score: 66
Period size: 3 Copynumber: 17.0 Consensus size: 3
37281104 GTGAGATAAG
* * * *
37281114 TAT TAA TAT TAG TAT TAG TAT TAT TAT TAG TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
37281162 TAT
1 TAT
37281165 GAGTGGGAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:37281161 original size:12 final size:12
Alignment explanation
Indices: 37281114--37281164 Score: 75
Period size: 12 Copynumber: 4.2 Consensus size: 12
37281104 GTGAGATAAG
* *
37281114 TATTAATATTAG
1 TATTAGTATTAT
37281126 TATTAGTATTAT
1 TATTAGTATTAT
37281138 TATTAGTATTAT
1 TATTAGTATTAT
*
37281150 TATTATTATTAT
1 TATTAGTATTAT
37281162 TAT
1 TAT
37281165 GAGTGGGAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (12 bp):
TATTAGTATTAT
Found at i:37281359 original size:24 final size:24
Alignment explanation
Indices: 37281305--37281376 Score: 67
Period size: 24 Copynumber: 2.9 Consensus size: 24
37281295 TGTGTGAAGT
*
37281305 TGTGAAATAATTATTG-ATTG-AAA
1 TGTGAAA-AATGATTGAATTGAAAA
*
37281328 GGTGGAAAAATGATTGAATTGAAAA
1 TGT-GAAAAATGATTGAATTGAAAA
37281353 TGTGAAAAATTGTAATTGAATTGA
1 TGTGAAAAA-TG--ATTGAATTGA
37281377 GAATATATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
23 9 0.22
24 14 0.35
25 7 0.17
27 10 0.25
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (24 bp):
TGTGAAAAATGATTGAATTGAAAA
Found at i:37281579 original size:37 final size:39
Alignment explanation
Indices: 37281520--37281615 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
37281510 CGGATAGATT
* * * *
37281520 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
37281557 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
37281596 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
37281616 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:37284289 original size:43 final size:43
Alignment explanation
Indices: 37284240--37284390 Score: 160
Period size: 43 Copynumber: 3.5 Consensus size: 43
37284230 GGTTATCGAG
* * *
37284240 ATGTGATTACAAGTAAGACCATGTCTGGGTCATTGGCATTG-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAATGTT
* *
37284282 ATTGTGATTACATGTAAGACTATGCCTGGGACATTGGCAATGTT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAATGTT
* * * * ** *
37284326 ATATGATTTCATGTAAGACCCTGTCTGGGACAGTGGCACCGAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAATGTT
* *
37284369 ATGTGGTAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
37284391 ATCTAAGATA
Statistics
Matches: 88, Mismatches: 19, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
42 1 0.01
43 85 0.97
44 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAATGTT
Done.