Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 116 of 250
Found at i:37287368 original size:28 final size:28
Alignment explanation
Indices: 37287337--37287392 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
37287327 CACTTGAATA
37287337 TGAAATGTGATAAATTGATTTAAAATTT
1 TGAAATGTGATAAATTGATTTAAAATTT
37287365 TGAAATGTGATAAATTGATTTAAAATTT
1 TGAAATGTGATAAATTGATTTAAAATTT
37287393 ACTCGTACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (28 bp):
TGAAATGTGATAAATTGATTTAAAATTT
Found at i:37287631 original size:17 final size:17
Alignment explanation
Indices: 37287592--37287632 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
37287582 AAAGTATATC
*
37287592 TGATAAAGCCCGATTAA
1 TGATAAAGCCCGATAAA
* *
37287609 TAATAATGCCCGATAAA
1 TGATAAAGCCCGATAAA
37287626 TGATAAA
1 TGATAAA
37287633 TGTTAAAAAT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (17 bp):
TGATAAAGCCCGATAAA
Found at i:37288938 original size:33 final size:34
Alignment explanation
Indices: 37288883--37288959 Score: 95
Period size: 33 Copynumber: 2.3 Consensus size: 34
37288873 AGTGACAGTC
* *
37288883 CAGTATCAGTTAGGGCCATAGCCCATTACAGTAT
1 CAGTATCAGTTAGGGCCATAGCCCAATACAGTAA
*
37288917 CAGTATCAGTGT-GGG-CTTAGCCCAATACAGTAA
1 CAGTATCAGT-TAGGGCCATAGCCCAATACAGTAA
*
37288950 CAGTAACAGT
1 CAGTATCAGT
37288960 AATGCAAACA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
33 24 0.63
34 13 0.34
35 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (34 bp):
CAGTATCAGTTAGGGCCATAGCCCAATACAGTAA
Found at i:37298288 original size:20 final size:20
Alignment explanation
Indices: 37298265--37298313 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
37298255 AGCTCCGTCT
*
37298265 AGCTCAACTCAGCTCATTTG
1 AGCTCAACTCAACTCATTTG
*** *
37298285 AGCTCGTTTCAACTCGTTTG
1 AGCTCAACTCAACTCATTTG
37298305 AGCTCAACT
1 AGCTCAACT
37298314 GGGCTTACTT
Statistics
Matches: 21, Mismatches: 8, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (20 bp):
AGCTCAACTCAACTCATTTG
Found at i:37309435 original size:20 final size:21
Alignment explanation
Indices: 37309399--37309439 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
37309389 TGATATTTGC
37309399 AAAAATTGATTTATTTTTTTAG
1 AAAAATTGA-TTATTTTTTTAG
37309421 AAAAATTGA-TATTTTTTTA
1 AAAAATTGATTATTTTTTTA
37309440 TATTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
22 9 0.47
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (21 bp):
AAAAATTGATTATTTTTTTAG
Found at i:37309896 original size:26 final size:26
Alignment explanation
Indices: 37309839--37309898 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
37309829 ATTGTAATAT
* *
37309839 ATATTTATTATTAAAATATTAAGATAA
1 ATATTT-TTAATAAAATATTAACATAA
*
37309866 ATATTTTTAATAATATATTAACA-AA
1 ATATTTTTAATAAAATATTAACATAA
37309891 ATTATTTT
1 A-TATTTT
37309899 AAATTTAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 3 0.10
26 20 0.69
27 6 0.21
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (26 bp):
ATATTTTTAATAAAATATTAACATAA
Found at i:37309957 original size:18 final size:18
Alignment explanation
Indices: 37309919--37309954 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
37309909 TTATTATTGT
*
37309919 TAAAATTTATTATTAAAA
1 TAAAATTTAATATTAAAA
37309937 TAAAATATTAATATTAAA
1 TAAAAT-TTAATATTAAA
37309955 TAATTAAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:37321488 original size:3 final size:3
Alignment explanation
Indices: 37321482--37321517 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
37321472 CTCATAATCA
* *
37321482 TCT TCT TCT TTT TCT TAT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
37321518 ACAAAAAGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:37322702 original size:13 final size:13
Alignment explanation
Indices: 37322684--37322749 Score: 82
Period size: 13 Copynumber: 5.1 Consensus size: 13
37322674 AGTTTAGCAA
37322684 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
37322697 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
37322710 TGC-TGTGAAAAAG
1 TGCTTTTG-AAAAG
*
37322723 TACTTTT-AAGAAG
1 TGCTTTTGAA-AAG
37322736 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
37322749 T
1 T
37322750 TTGGTTTAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
12 5 0.11
13 36 0.80
14 4 0.09
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:37323544 original size:21 final size:21
Alignment explanation
Indices: 37323505--37323544 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
37323495 TATATTAATA
* * *
37323505 TAAAATTTTAATTTTAATTTT
1 TAAAATATTAATATCAATTTT
37323526 TAAAATATTAATATCAATT
1 TAAAATATTAATATCAATT
37323545 AATATAATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (21 bp):
TAAAATATTAATATCAATTTT
Found at i:37323648 original size:38 final size:38
Alignment explanation
Indices: 37323606--37323680 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
37323596 TAAATTATTA
37323606 ATATTATTTGTTATTCTATTAAACTTATTTAATAATAG
1 ATATTATTTGTTATTCTATTAAACTTATTTAATAATAG
*
37323644 ATATTATTTGTTATTTTATTAAACTTATTTAATAATA
1 ATATTATTTGTTATTCTATTAAACTTATTTAATAATA
37323681 AGTTTTAACA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (38 bp):
ATATTATTTGTTATTCTATTAAACTTATTTAATAATAG
Found at i:37323699 original size:19 final size:17
Alignment explanation
Indices: 37323675--37323709 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
37323665 AACTTATTTA
37323675 ATAATAAGTTTTAACATTG
1 ATAATAA-TTTT-ACATTG
37323694 ATAATAATTTTACATT
1 ATAATAATTTTACATT
37323710 TTAAGTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 4 0.25
19 7 0.44
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.46
Consensus pattern (17 bp):
ATAATAATTTTACATTG
Found at i:37325987 original size:53 final size:53
Alignment explanation
Indices: 37325807--37326013 Score: 207
Period size: 53 Copynumber: 3.8 Consensus size: 53
37325797 ATTAGACTTT
* * * *
37325807 AAGGATACCAAGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
37325861 AAGGAAATCATATAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
37325916 AAAGATTCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * * *
37325969 AAGGATACCACGTAAGACCGTGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
37326014 TAAAAAGGAA
Statistics
Matches: 121, Mismatches: 30, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 44 0.36
54 38 0.31
55 39 0.32
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:37328163 original size:28 final size:29
Alignment explanation
Indices: 37328106--37328163 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 29
37328096 TACAGGGGTT
37328106 TTCACACGGCCTGGCACACGCCCGTGTCC
1 TTCACACGGCCTGGCACACGCCCGTGTCC
*
37328135 TTCACACGGCCAT-G-ACATGCCCGTGTCC
1 TTCACACGGCC-TGGCACACGCCCGTGTCC
37328163 T
1 T
37328164 AGCCCGTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 14 0.52
29 12 0.44
30 1 0.04
ACGTcount: A:0.16, C:0.41, G:0.22, T:0.21
Consensus pattern (29 bp):
TTCACACGGCCTGGCACACGCCCGTGTCC
Found at i:37333378 original size:17 final size:17
Alignment explanation
Indices: 37333356--37333389 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
37333346 AATTACCCTA
37333356 AAAATTAATCTAAGTGT
1 AAAATTAATCTAAGTGT
37333373 AAAATTAATCTAAGTGT
1 AAAATTAATCTAAGTGT
37333390 GCTTACAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.35
Consensus pattern (17 bp):
AAAATTAATCTAAGTGT
Found at i:37338433 original size:26 final size:26
Alignment explanation
Indices: 37338404--37338511 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
37338394 TGGTACAAAT
37338404 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
37338430 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37338456 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
37338482 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37338508 TGAT
1 TGAT
37338512 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:37340148 original size:27 final size:26
Alignment explanation
Indices: 37340108--37340248 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 26
37340098 AGGAAGCGTC
*
37340108 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
37340135 CTGGTGGTTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
37340162 CTGGTGGCTATGCCACGATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
37340189 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
37340216 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
37340243 CTGGTG
1 CTGGTG
37340249 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.10
27 86 0.88
28 2 0.02
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:37340190 original size:54 final size:53
Alignment explanation
Indices: 37340108--37340248 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
37340098 AGGAAGCGTC
*
37340108 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGTTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
37340162 CTGGTGGCTATGCCACGATTATTTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
37340216 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
37340249 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.08
54 74 0.93
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:37340259 original size:27 final size:26
Alignment explanation
Indices: 37340108--37340266 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 26
37340098 AGGAAGCGTC
* * *
37340108 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
**
37340135 CTGGTGGTTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * * * *
37340162 CTGGTGGCTATGCCACGATTATTTGAT
1 CTGGTGACTCTGCCAC-AATATCTGTT
*
37340189 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
37340216 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
37340243 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
37340267 GCAACCTCGC
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
26 10 0.09
27 101 0.89
28 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:37342519 original size:20 final size:21
Alignment explanation
Indices: 37342496--37342542 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
37342486 GGTTCAAGTT
37342496 ATTTTCT-AGAAAATCAATCC
1 ATTTTCTCAGAAAATCAATCC
**
37342516 ATTTT-TCAGAAAATTGATCC
1 ATTTTCTCAGAAAATCAATCC
37342536 ATTTTCT
1 ATTTTCT
37342543 TAAAGTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.91
21 1 0.04
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (21 bp):
ATTTTCTCAGAAAATCAATCC
Found at i:37349228 original size:39 final size:39
Alignment explanation
Indices: 37349185--37349270 Score: 136
Period size: 39 Copynumber: 2.2 Consensus size: 39
37349175 TTTAGTTATT
* *
37349185 TTAGTTTGTGTCTTCAATTATGTCATAGTTTGAACATCA
1 TTAGTATGAGTCTTCAATTATGTCATAGTTTGAACATCA
*
37349224 TTAGTATGAGTCTTTAATTATGTCATAGTTTGAACATCA
1 TTAGTATGAGTCTTCAATTATGTCATAGTTTGAACATCA
*
37349263 TTAATATG
1 TTAGTATG
37349271 TGTTCTGCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.45
Consensus pattern (39 bp):
TTAGTATGAGTCTTCAATTATGTCATAGTTTGAACATCA
Found at i:37349407 original size:52 final size:50
Alignment explanation
Indices: 37349287--37349409 Score: 183
Period size: 50 Copynumber: 2.4 Consensus size: 50
37349277 GCATTTAGTA
*
37349287 AAGTCATGCATTATGTAACTCTCATGTAAGTTAAGTTTGCATCATAAATT
1 AAGTCATGCATTATGTAACTCCCATGTAAGTTAAGTTTGCATCATAAATT
* * *
37349337 ATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATT
1 AAGTCATGCATTATGTAACTCCCATGTAAGTT-AAGTTTGCATCA-TAAATT
*
37349389 AAGTCATGCATTAAGTAACTC
1 AAGTCATGCATTATGTAACTC
37349410 ATTTGTTCAT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
50 28 0.44
51 12 0.19
52 24 0.38
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (50 bp):
AAGTCATGCATTATGTAACTCCCATGTAAGTTAAGTTTGCATCATAAATT
Found at i:37353415 original size:76 final size:76
Alignment explanation
Indices: 37353289--37353482 Score: 219
Period size: 76 Copynumber: 2.6 Consensus size: 76
37353279 TTTGTAATTA
* * * ** * *
37353289 TGCAAATCTTCGTCGGTTTTTCTAACTAATGTTGGGCACACATTTAATATCGTTAGTTTATTC-G
1 TGCAAATCTTTGTCGGGTTATCCGACTAGTGTTGGGCACACATTTAATATCGTCAGTTTA-TCAG
* * *
37353353 ATTAGCGCTTGG
65 ACTAGCACTGGG
*
37353365 TGCAAATCTTTGTCGGGTTATCCGACTAGTGTTGGGCACATATTTAATATCGTCAGTTTATCAGA
1 TGCAAATCTTTGTCGGGTTATCCGACTAGTGTTGGGCACACATTTAATATCGTCAGTTTATCAGA
*
37353430 CTAGTACTGGG
66 CTAGCACTGGG
** * * *
37353441 CACAAATCTTTTTTGGGTTATCCGGCTAGTGTTGGGCACACA
1 TGCAAATCTTTGTCGGGTTATCCGACTAGTGTTGGGCACACA
37353483 CATTTAATTT
Statistics
Matches: 99, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
75 2 0.02
76 97 0.98
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (76 bp):
TGCAAATCTTTGTCGGGTTATCCGACTAGTGTTGGGCACACATTTAATATCGTCAGTTTATCAGA
CTAGCACTGGG
Found at i:37357613 original size:19 final size:20
Alignment explanation
Indices: 37357576--37357613 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
37357566 ATAAGGTGGT
37357576 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
37357596 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
37357614 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:37367519 original size:59 final size:60
Alignment explanation
Indices: 37367456--37367571 Score: 155
Period size: 59 Copynumber: 1.9 Consensus size: 60
37367446 GTTAGGTGAC
* * * * *
37367456 CAATTTAAAAAATTTATAGTTGAGTGA-CTAAAAAAGAAGCA-AACACATAGTTGGGTTAT
1 CAATTAAAAAAAATCATAGTTGAGTGACCAAAAAAAGAA-AATAACACATAGTTGGGTTAT
*
37367515 CAATTAAAAAAAATCATAGTTGAGTGACCAAAAAAAGAAAATAACCCATAGTTGGGT
1 CAATTAAAAAAAATCATAGTTGAGTGACCAAAAAAAGAAAATAACACATAGTTGGGT
37367572 ACCTATGGTG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 25 0.51
60 24 0.49
ACGTcount: A:0.48, C:0.10, G:0.16, T:0.25
Consensus pattern (60 bp):
CAATTAAAAAAAATCATAGTTGAGTGACCAAAAAAAGAAAATAACACATAGTTGGGTTAT
Found at i:37367555 original size:28 final size:28
Alignment explanation
Indices: 37367471--37367556 Score: 68
Period size: 28 Copynumber: 3.0 Consensus size: 28
37367461 TAAAAAATTT
*
37367471 ATAGTTGAGTGACTAAAAAAGAAGCAAACA-C
1 ATAGTTGAGTGAC-CAAAAA-AAG-AAA-ATC
* * * *
37367502 ATAGTTGGGTTATCAATTAAAA-AAAATC
1 ATAGTTGAGTGACCAA-AAAAAGAAAATC
37367530 ATAGTTGAGTGACCAAAAAAAGAAAAT
1 ATAGTTGAGTGACCAAAAAAAGAAAAT
37367557 AACCCATAGT
Statistics
Matches: 43, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
27 5 0.12
28 22 0.51
30 4 0.09
31 12 0.28
ACGTcount: A:0.51, C:0.09, G:0.17, T:0.22
Consensus pattern (28 bp):
ATAGTTGAGTGACCAAAAAAAGAAAATC
Found at i:37369818 original size:23 final size:22
Alignment explanation
Indices: 37369792--37369836 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
37369782 GGCTAATTGA
37369792 TTAATAAGTA-TATATATATTATT
1 TTAATAA-TATTATAT-TATTATT
37369815 TTAATAATATTATATTATTATT
1 TTAATAATATTATATTATTATT
37369837 AAAATACAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
TTAATAATATTATATTATTATT
Found at i:37369830 original size:19 final size:20
Alignment explanation
Indices: 37369801--37369842 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 20
37369791 ATTAATAAGT
37369801 ATATATATATTATT-TTAATA
1 ATATATATATTATTATTAA-A
37369821 ATAT-TATATTATTATTAAA
1 ATATATATATTATTATTAAA
37369840 ATA
1 ATA
37369843 CAATTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
ATATATATATTATTATTAAA
Found at i:37370358 original size:17 final size:16
Alignment explanation
Indices: 37370328--37370369 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
37370318 AATATGTGTT
*
37370328 TAAA-AATAACATATAA
1 TAAATAATAAAATAT-A
37370344 TAAATAATAAAATATA
1 TAAATAATAAAATATA
*
37370360 TTAATAATAA
1 TAAATAATAA
37370370 TACATGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAATAATAAAATATA
Found at i:37373742 original size:12 final size:12
Alignment explanation
Indices: 37373719--37373770 Score: 61
Period size: 12 Copynumber: 4.3 Consensus size: 12
37373709 AAACCCTTTT
37373719 AAAATT-TAAAA
1 AAAATTATAAAA
*
37373730 AAAATCATAAAA
1 AAAATTATAAAA
*
37373742 AAAATTATAGACA
1 AAAATTATA-AAA
*
37373755 AAATTTATAAAA
1 AAAATTATAAAA
37373767 AAAA
1 AAAA
37373771 ATTTAAAGGT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
11 5 0.15
12 18 0.55
13 10 0.30
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.23
Consensus pattern (12 bp):
AAAATTATAAAA
Found at i:37386539 original size:5 final size:5
Alignment explanation
Indices: 37386529--37386567 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
37386519 GTCAAAGATG
* *
37386529 TGAAT TGAAT TGAAT TGAAT ATGAAT TGTAT TCAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
37386568 TGTTAAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (5 bp):
TGAAT
Found at i:37387223 original size:25 final size:25
Alignment explanation
Indices: 37387135--37387225 Score: 71
Period size: 25 Copynumber: 3.7 Consensus size: 25
37387125 TACCCATTAT
* * *
37387135 TGGCTCACATGAGCTTCCTG-AATA
1 TGGCTCACATGAGCTTCCCGTTACA
**
37387159 TGGCTCTTATGAGCTTCCCGTTATACA
1 TGGCTCACATGAGCTTCCCG-T-TACA
* * *
37387186 -GTC-CAGATAAGCTTCCCGTTACA
1 TGGCTCACATGAGCTTCCCGTTACA
37387209 TGGCTCACATGAGCTTC
1 TGGCTCACATGAGCTTC
37387226 TTGTTATATA
Statistics
Matches: 50, Mismatches: 12, Indels: 9
0.70 0.17 0.13
Matches are distributed among these distances:
23 4 0.08
24 20 0.40
25 22 0.44
26 2 0.04
27 2 0.04
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (25 bp):
TGGCTCACATGAGCTTCCCGTTACA
Found at i:37392822 original size:42 final size:42
Alignment explanation
Indices: 37392773--37392866 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
37392763 AGACTATATG
* * *
37392773 TAAGACCATATATGGGAAATGGCATCTATATGAGACTTTGTA
1 TAAGACCATATATGGGAAATGACATCAATATGAGACTTCGTA
* * * *
37392815 TAAGACCATATCTGGGATATGACATCAATATGGGACTTCGTG
1 TAAGACCATATATGGGAAATGACATCAATATGAGACTTCGTA
37392857 TAAGACCATA
1 TAAGACCATA
37392867 GCTAGGCTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (42 bp):
TAAGACCATATATGGGAAATGACATCAATATGAGACTTCGTA
Found at i:37396012 original size:20 final size:20
Alignment explanation
Indices: 37395975--37396012 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37395965 TGATGGGGAG
*
37395975 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
37395995 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
37396013 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:37397962 original size:46 final size:46
Alignment explanation
Indices: 37397910--37398229 Score: 507
Period size: 46 Copynumber: 7.0 Consensus size: 46
37397900 AGTGTGCTCT
37397910 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
37397956 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
37398002 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
37398048 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
37398094 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
37398140 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
37398186 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
37398230 TCATGTCAAA
Statistics
Matches: 256, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.00
46 255 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:37400426 original size:40 final size:40
Alignment explanation
Indices: 37400327--37400455 Score: 150
Period size: 41 Copynumber: 3.2 Consensus size: 40
37400317 AACACTTCTT
* * * * *
37400327 TTTCATTCGTTATCCTTTTTGAATAACATCCTTTTTAACA
1 TTTCATTTGTTATCCTTTTCGGATAACTTCCTTTTCAACA
* *
37400367 TTTTCATTTGTTATTCTTTTCGGATAACTTCCTTGTCAACA
1 -TTTCATTTGTTATCCTTTTCGGATAACTTCCTTTTCAACA
* * *
37400408 TTTCATTTGTTATCCTTTTCGGATCACTTTCTTTTCAAGCT
1 TTTCATTTGTTATCCTTTTCGGATAACTTCCTTTTCAA-CA
37400449 TTTCATT
1 TTTCATT
37400456 GATTTAGAAA
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
40 34 0.45
41 41 0.55
ACGTcount: A:0.19, C:0.20, G:0.08, T:0.53
Consensus pattern (40 bp):
TTTCATTTGTTATCCTTTTCGGATAACTTCCTTTTCAACA
Found at i:37402088 original size:68 final size:69
Alignment explanation
Indices: 37401969--37402100 Score: 164
Period size: 68 Copynumber: 1.9 Consensus size: 69
37401959 TAAATTAAAA
* *
37401969 AATACATTTAATTCATTCATATTTTTATATATAAAAATATTTATAGATAATAT-AATGTAGTGCA
1 AATACATTTAATTAATTCATATTTTTATATATAAAAATATTTATACATAATATAAAT-TAGTGCA
37402033 CATAT
65 CATAT
* * *
37402038 AATA-ATTTAATTAATTTATATTTTTATCTAT-AAAATATTT-TACCCTTAATATAAATTAGTGC
1 AATACATTTAATTAATTCATATTTTTATATATAAAAATATTTATA--CATAATATAAATTAGTGC
37402100 A
64 A
37402101 TTGGATTAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
66 2 0.04
67 9 0.16
68 37 0.67
69 7 0.13
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (69 bp):
AATACATTTAATTAATTCATATTTTTATATATAAAAATATTTATACATAATATAAATTAGTGCAC
ATAT
Found at i:37403038 original size:21 final size:21
Alignment explanation
Indices: 37403012--37403067 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
37403002 AATGATTTAT
*
37403012 TAGGTTCAAGTGGTAAGACCC
1 TAGGTTCAAGTGGTAAAACCC
* *
37403033 TAGGTTCAAGAGGTAAAACTC
1 TAGGTTCAAGTGGTAAAACCC
37403054 TAAGG-TCAAGTGGT
1 T-AGGTTCAAGTGGT
37403068 TTTAGAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 27 0.90
22 3 0.10
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (21 bp):
TAGGTTCAAGTGGTAAAACCC
Found at i:37403765 original size:30 final size:30
Alignment explanation
Indices: 37403729--37403788 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
37403719 GGCTGTAATG
37403729 AATGCCATGAATATTCAGCTAGCATGAGTT
1 AATGCCATGAATATTCAGCTAGCATGAGTT
*
37403759 AATGCCATGAATATTCAGTTAGCATGAGTT
1 AATGCCATGAATATTCAGCTAGCATGAGTT
37403789 TGCATTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (30 bp):
AATGCCATGAATATTCAGCTAGCATGAGTT
Found at i:37407219 original size:20 final size:20
Alignment explanation
Indices: 37407189--37407233 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
37407179 CTTTTTTGTT
*
37407189 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTATATTAAA
* *
37407208 ATGGGCCCAACTATGTTAAT
1 ATGGGCCCAACTATATTAAA
37407228 ATGGGC
1 ATGGGC
37407234 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTATATTAAA
Found at i:37409650 original size:18 final size:18
Alignment explanation
Indices: 37409584--37409657 Score: 69
Period size: 18 Copynumber: 4.1 Consensus size: 18
37409574 AACTTGAAAG
37409584 ATTGACTGTTACTGAATA
1 ATTGACTGTTACTGAATA
* * *
37409602 ATTTAATTGTTACTGTAT-
1 A-TTGACTGTTACTGAATA
* *
37409620 ATCTGATTTTTACTGAATA
1 AT-TGACTGTTACTGAATA
*
37409639 ATTGACTGTTACTGGATA
1 ATTGACTGTTACTGAATA
37409657 A
1 A
37409658 CCGATCAATT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
17 1 0.02
18 28 0.64
19 15 0.34
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (18 bp):
ATTGACTGTTACTGAATA
Found at i:37409700 original size:18 final size:18
Alignment explanation
Indices: 37409679--37409723 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
37409669 ATTGATACTC
**
37409679 AATAACTGATTATTATTG
1 AATAACTGATTATTACCG
* *
37409697 AATAATTGATTGTTACCG
1 AATAACTGATTATTACCG
37409715 AATAACTGA
1 AATAACTGA
37409724 CTGCTACTGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (18 bp):
AATAACTGATTATTACCG
Found at i:37409735 original size:18 final size:18
Alignment explanation
Indices: 37409695--37409737 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
37409685 TGATTATTAT
* * *
37409695 TGAATAATTGATTGTTAC
1 TGAATAACTGACTGCTAC
*
37409713 CGAATAACTGACTGCTAC
1 TGAATAACTGACTGCTAC
37409731 TGAATAA
1 TGAATAA
37409738 ATAATTGTTC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (18 bp):
TGAATAACTGACTGCTAC
Found at i:37409735 original size:36 final size:36
Alignment explanation
Indices: 37409664--37409746 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 36
37409654 ATAACCGATC
* * * *
37409664 AATTGATTGATACTCAATAACTGATTATTATTGAAT
1 AATTGATTGTTACTCAATAACTGACTACTACTGAAT
*
37409700 AATTGATTGTTAC-CGAATAACTGACTGCTACTGAAT
1 AATTGATTGTTACTC-AATAACTGACTACTACTGAAT
* *
37409736 AAATAATTGTT
1 AATTGATTGTT
37409747 CTGATTGACT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
35 1 0.03
36 38 0.97
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (36 bp):
AATTGATTGTTACTCAATAACTGACTACTACTGAAT
Found at i:37416427 original size:46 final size:46
Alignment explanation
Indices: 37416367--37416542 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
37416357 TATTTGGGCA
*
37416367 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
37416413 TCTGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
37416458 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
37416506 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37416543 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 64 0.57
47 28 0.25
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:37416474 original size:93 final size:93
Alignment explanation
Indices: 37416363--37416535 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
37416353 CGGATATTTG
* *
37416363 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
37416428 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* * *
37416456 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
37416521 TTGAGTCCGAGTTCA
66 TTGAGTCCGAGTTCA
37416536 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:37420516 original size:103 final size:102
Alignment explanation
Indices: 37420355--37420574 Score: 338
Period size: 103 Copynumber: 2.2 Consensus size: 102
37420345 TGTATATAAA
** * *
37420355 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
37420420 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTA--TGCTGATTCCCCCG
* *
37420459 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGT-GTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
37420522 TTGAAATGTGAAAGGGGGTTGCTATGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGCTGATTCCCCCG
37420560 AGGGG-TGCTAAGTGC
1 AGGGGTTGCTAAGTGC
37420575 GATATCCATT
Statistics
Matches: 109, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
100 10 0.09
101 19 0.17
103 48 0.44
104 32 0.29
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (102 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGCTGATTCCCCCG
Found at i:37420576 original size:69 final size:66
Alignment explanation
Indices: 37420459--37420641 Score: 197
Period size: 69 Copynumber: 2.6 Consensus size: 66
37420449 GATTCCCCCG
* *
37420459 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGTGCTAAGTGCGATATCCACCATATCTTT
1 AGGGGTTGCT-AGTGCTGATTCCCC-G---A--GGGGTGCTAAGTGCGATATCCACCATATATTT
37420524 GAAATGTGAA
59 GAAA--TGAA
***
37420534 AGGGGGTTGCTA-TGCTGATTCCCCCGAGGGGTGCTAAGTGCGATATCCATTGTATATTTGAAAT
1 A-GGGGTTGCTAGTGCTGATT-CCCCGAGGGGTGCTAAGTGCGATATCCACCATATATTTGAAAT
37420598 GAA
64 GAA
37420601 AGGGGTTGCTATGTGCTGATTCCCCGAGGGGTTGCTAAGTG
1 AGGGGTTGCTA-GTGCTGATTCCCCGAGGGG-TGCTAAGTG
37420642 ATGATTCCCC
Statistics
Matches: 98, Mismatches: 5, Indels: 17
0.82 0.04 0.14
Matches are distributed among these distances:
66 10 0.10
67 15 0.15
68 17 0.17
69 31 0.32
71 1 0.01
74 9 0.09
75 6 0.06
76 9 0.09
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (66 bp):
AGGGGTTGCTAGTGCTGATTCCCCGAGGGGTGCTAAGTGCGATATCCACCATATATTTGAAATGA
A
Found at i:37420637 original size:26 final size:26
Alignment explanation
Indices: 37420601--37420653 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
37420591 TTGAAATGAA
* *
37420601 AGGGGTTGCTATGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGATGATTCCCCG
37420627 AGGGGTTGCTAAGTGATGATTCCCCG
1 AGGGGTTGCTAAGTGATGATTCCCCG
37420653 A
1 A
37420654 TTCAGTGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.17, C:0.21, G:0.34, T:0.28
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGATGATTCCCCG
Found at i:37424371 original size:27 final size:27
Alignment explanation
Indices: 37424329--37424380 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
37424319 GAAATGTGAA
*
37424329 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
37424356 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
37424381 GGTTCATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:37424393 original size:103 final size:103
Alignment explanation
Indices: 37424253--37424474 Score: 374
Period size: 103 Copynumber: 2.2 Consensus size: 103
37424243 TGTATATAAA
** * *
37424253 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
37424317 TTGAAATGTGAAAGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGTTGCTATGTGCTGATTCCCCCG
* *
37424356 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
37424421 TGAAATGTGAAAGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGTTGCTATGTGCTGATTCCCCCG
37424459 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
37424475 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
103 111 0.99
104 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.32
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:37424495 original size:71 final size:71
Alignment explanation
Indices: 37424394--37424544 Score: 241
Period size: 71 Copynumber: 2.1 Consensus size: 71
37424384 TCATTGGTGG
* *
37424394 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAA-GGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
37424458 GAGGGGT
65 GAGGGGT
***
37424465 TGCTAAGTGCGATATCCATTGTATATTTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
37424530 AGGGGT
66 AGGGGT
37424536 TGCTAAGTG
1 TGCTAAGTG
37424545 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 3 0.04
71 71 0.96
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (71 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
AGGGGT
Found at i:37428309 original size:23 final size:23
Alignment explanation
Indices: 37428278--37428323 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
37428268 TATATTTTGA
* * *
37428278 GTTCGTATATAGCTAGTCAATAT
1 GTTCATATATAACTAGTAAATAT
37428301 GTTCATATATAACTAGTAAATAT
1 GTTCATATATAACTAGTAAATAT
37428324 CTAATATCCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (23 bp):
GTTCATATATAACTAGTAAATAT
Found at i:37428508 original size:13 final size:13
Alignment explanation
Indices: 37428490--37428519 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
37428480 AACATAGGGA
*
37428490 TTAAGCTTGGATG
1 TTAAGCTTAGATG
37428503 TTAAGCTTAGATG
1 TTAAGCTTAGATG
37428516 TTAA
1 TTAA
37428520 ATAGTTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (13 bp):
TTAAGCTTAGATG
Found at i:37431193 original size:21 final size:20
Alignment explanation
Indices: 37431161--37431201 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
37431151 TTACATGAGT
37431161 ATTTTGATGTTTGATGATAG
1 ATTTTGATGTTTGATGATAG
37431181 ATTTTGAATGTTTGATGATAG
1 ATTTTG-ATGTTTGATGATAG
37431202 TTATACAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (20 bp):
ATTTTGATGTTTGATGATAG
Found at i:37448252 original size:48 final size:48
Alignment explanation
Indices: 37448181--37448357 Score: 230
Period size: 48 Copynumber: 3.7 Consensus size: 48
37448171 AGGGTAAATT
* * * * **
37448181 GTAGATGCCATGTCTCAGACATGGTCTTACATTGGCTCACAT-GTCAAG
1 GTAGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
*
37448229 GTAGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTG
1 GTAGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
** *
37448277 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GTAGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
* *
37448325 GTCGATGTCATGTCCCAGACATGGTCTTACACT
1 GTAGATGCCATGTCCCAGACATGGTCTTACACT
37448358 AGCACACATA
Statistics
Matches: 114, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
48 113 0.99
49 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.29
Consensus pattern (48 bp):
GTAGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
Found at i:37448348 original size:96 final size:96
Alignment explanation
Indices: 37448184--37448360 Score: 259
Period size: 96 Copynumber: 1.8 Consensus size: 96
37448174 GTAAATTGTA
* *
37448184 GATGCCATGTCTCAGACATGGTCTTACATTGGCTCACATGTCAAGGTAGATGCCATGTCCCAGAC
1 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCACATATCAAGGTAGATGCCATGTCCCAGAC
37448249 ATGGTCTTACACTAGCTCTCATAATGTGGCC
66 ATGGTCTTACACTAGCTCTCATAATGTGGCC
* ** * *
37448280 GATGCCATGTC-CTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGTCGATGTCATGTCCCAG
1 GATGCCATGTCTC-AGACATGGTCTTACACTGGCTCACAT-ATCAAGGTAGATGCCATGTCCCAG
37448343 ACATGGTCTTACACTAGC
64 ACATGGTCTTACACTAGC
37448361 ACACATATCA
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
95 1 0.01
96 70 0.97
97 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (96 bp):
GATGCCATGTCTCAGACATGGTCTTACACTGGCTCACATATCAAGGTAGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTCATAATGTGGCC
Found at i:37452803 original size:40 final size:40
Alignment explanation
Indices: 37452735--37452812 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
37452725 AAGTTCCATA
**
37452735 TATATAGCCAAAGCTATTCCAATTCGCACACCAAGTGCTT
1 TATATAGCCAAAGCTATTCCAAAACGCACACCAAGTGCTT
*
37452775 TATATAGCCAAAGCTA-TCTCAAAACGCACACTAAGTGC
1 TATATAGCCAAAGCTATTC-CAAAACGCACACCAAGTGC
37452813 CAAACATAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 2 0.06
40 32 0.94
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (40 bp):
TATATAGCCAAAGCTATTCCAAAACGCACACCAAGTGCTT
Found at i:37453273 original size:28 final size:29
Alignment explanation
Indices: 37453232--37453288 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
37453222 ATTTTACAAT
*
37453232 TTAACCCCTCAATTTACACTTTTCTCAAA
1 TTAACCCCTCAATTGACACTTTTCTCAAA
* * *
37453261 TTAATCCCT-AATTGACATTTTTGTCAAA
1 TTAACCCCTCAATTGACACTTTTCTCAAA
37453289 AATCACTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.32, C:0.25, G:0.04, T:0.40
Consensus pattern (29 bp):
TTAACCCCTCAATTGACACTTTTCTCAAA
Found at i:37455950 original size:9 final size:9
Alignment explanation
Indices: 37455936--37455960 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37455926 TTATACGAGG
37455936 TGGTTATAC
1 TGGTTATAC
37455945 TGGTTATAC
1 TGGTTATAC
37455954 TGGTTAT
1 TGGTTAT
37455961 CACGGGTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.08, G:0.24, T:0.48
Consensus pattern (9 bp):
TGGTTATAC
Found at i:37457887 original size:21 final size:20
Alignment explanation
Indices: 37457855--37457895 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
37457845 ATACATGAGT
37457855 ATTTTGATGTTTGATGATAG
1 ATTTTGATGTTTGATGATAG
37457875 ATTTTGAATGTTTGATGATAG
1 ATTTTG-ATGTTTGATGATAG
37457896 TTATACAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (20 bp):
ATTTTGATGTTTGATGATAG
Found at i:37463869 original size:13 final size:13
Alignment explanation
Indices: 37463851--37463880 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
37463841 TCAAAACTAT
*
37463851 TTAACATCTAAGC
1 TTAACATCCAAGC
37463864 TTAACATCCAAGC
1 TTAACATCCAAGC
37463877 TTAA
1 TTAA
37463881 TCCCTATGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (13 bp):
TTAACATCCAAGC
Found at i:37464073 original size:23 final size:23
Alignment explanation
Indices: 37464047--37464092 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
37464037 GGGATATTAG
* * *
37464047 ATATTTACTAGTTATATATGAAC
1 ATATTGACTAGCTATATACGAAC
37464070 ATATTGACTAGCTATATACGAAC
1 ATATTGACTAGCTATATACGAAC
37464093 TCAAAATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37
Consensus pattern (23 bp):
ATATTGACTAGCTATATACGAAC
Found at i:37468024 original size:104 final size:105
Alignment explanation
Indices: 37467902--37468126 Score: 373
Period size: 105 Copynumber: 2.2 Consensus size: 105
37467892 AATGGATATC
37467902 GCACTTAGCAACCCCTC-GGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGG
1 GCACTTAGCAACCCCTCGGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGG
* *
37467966 TGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 TGGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
37468006 GCACTTAGCAACCCCTCGGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGG
1 GCACTTAGCAACCCCTCGGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGG
* *
37468071 TGGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 TGGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
37468111 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
37468127 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 17 0.15
105 95 0.84
106 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.20, T:0.18
Consensus pattern (105 bp):
GCACTTAGCAACCCCTCGGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGG
TGGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:37468488 original size:29 final size:29
Alignment explanation
Indices: 37468455--37468518 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
37468445 TAATCCACCA
37468455 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
37468484 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
37468514 CCCAA
1 CCCAA
37468519 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:37468492 original size:30 final size:30
Alignment explanation
Indices: 37468462--37468518 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
37468452 CCACCCAACT
37468462 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
37468491 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
37468519 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:37474975 original size:29 final size:29
Alignment explanation
Indices: 37474933--37474992 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
37474923 AATTTCATGC
37474933 ATACATATGAATGAGTAGAGCCGGGATCA
1 ATACATATGAATGAGTAGAGCCGGGATCA
37474962 ATACATATGAATGAGTAGAGCCGGGATCA
1 ATACATATGAATGAGTAGAGCCGGGATCA
37474991 AT
1 AT
37474993 CAAAGCAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (29 bp):
ATACATATGAATGAGTAGAGCCGGGATCA
Found at i:37477903 original size:26 final size:26
Alignment explanation
Indices: 37477873--37477923 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
37477863 ACCAATGAAC
*
37477873 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
37477899 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
37477924 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:37477963 original size:103 final size:104
Alignment explanation
Indices: 37477779--37478001 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
37477769 AATGGATATC
37477779 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
37477844 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
37477883 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
37477947 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
37477986 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
37478002 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 94 0.84
104 18 0.16
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:37478361 original size:29 final size:29
Alignment explanation
Indices: 37478328--37478391 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
37478318 TAATCCACCA
37478328 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
37478357 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
37478387 CCCAA
1 CCCAA
37478392 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:37478365 original size:30 final size:30
Alignment explanation
Indices: 37478335--37478391 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
37478325 CCACCCAACT
37478335 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
37478364 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
37478392 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:37480211 original size:35 final size:35
Alignment explanation
Indices: 37480067--37480228 Score: 132
Period size: 35 Copynumber: 4.7 Consensus size: 35
37480057 TCTTTCGAGA
*
37480067 TGACACCATGAT-GATGGTATATAGGTCCTTCAGGG
1 TGACACCAT-ATAAATGGTATATAGGTCCTTCAGGG
* ** * * * **
37480102 CGACACTGTGTAAACGGCATATAGGT-CTTTTGAGG
1 TGACACCATATAAATGGTATATAGGTCCTTCAG-GG
* * * * * *
37480137 TGACACCGTGTAAATGG-ATGTAAGTCTTTCATGG
1 TGACACCATATAAATGGTATATAGGTCCTTCAGGG
37480171 TGACACCATATAAATGGTATATAGGTCCTTCAGGG
1 TGACACCATATAAATGGTATATAGGTCCTTCAGGG
* *
37480206 TGACACCCTATAAATGATATATA
1 TGACACCATATAAATGGTATATA
37480229 ATTCCTACGG
Statistics
Matches: 97, Mismatches: 26, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
34 28 0.29
35 69 0.71
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (35 bp):
TGACACCATATAAATGGTATATAGGTCCTTCAGGG
Found at i:37482508 original size:14 final size:14
Alignment explanation
Indices: 37482489--37482523 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
37482479 AGGAATAAAA
37482489 AAATAAATAACAAG
1 AAATAAATAACAAG
37482503 AAATAAATAACAAG
1 AAATAAATAACAAG
37482517 AAATAAA
1 AAATAAA
37482524 CAAATGAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.74, C:0.06, G:0.06, T:0.14
Consensus pattern (14 bp):
AAATAAATAACAAG
Found at i:37492484 original size:21 final size:21
Alignment explanation
Indices: 37492445--37492485 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37492435 TCGATGACAG
* **
37492445 TGGTGGCTATTGGTTGTCCAA
1 TGGTGGCTAGTGGAGGTCCAA
37492466 TGGTGGCTAGTGGAGGTCCA
1 TGGTGGCTAGTGGAGGTCCA
37492486 GCGGTGGTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.15, G:0.39, T:0.32
Consensus pattern (21 bp):
TGGTGGCTAGTGGAGGTCCAA
Found at i:37501220 original size:46 final size:45
Alignment explanation
Indices: 37501151--37501319 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 45
37501141 CATGTCTCAG
* *
37501151 GCATGTCCTAGACATGTCTTACACTAGCTTACGTCTCGAGGCCGAA
1 GCATGTCCCAGACATGTCTTACACTAGCTT-CGTCTCGAGGCCGAT
* * * * *
37501197 GTATGTCCCAGACATGTTTTACACTAGCACTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-TTCGTCTCGAGGCCGAT
* * * *
37501243 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTAAT-GTGGCCGAT
1 G-CATGTCCCAGACAT-GTCTTACACTAGCT-TCGT-CTCGAGGCCGAT
37501291 GCATGTCCCAGACATGTCTTACACTAGCT
1 GCATGTCCCAGACATGTCTTACACTAGCT
37501320 CATAATAATC
Statistics
Matches: 101, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
46 51 0.50
47 28 0.28
48 21 0.21
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTACACTAGCTTCGTCTCGAGGCCGAT
Found at i:37503946 original size:46 final size:44
Alignment explanation
Indices: 37503896--37504068 Score: 168
Period size: 46 Copynumber: 3.8 Consensus size: 44
37503886 TTGGGCATCT
* *
37503896 GAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-GTCC
*** * *
37503942 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAGTCC
* *
37503989 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-GTCC
* *
37504035 CAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37504069 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.61
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (44 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAGTCC
Found at i:37504048 original size:93 final size:93
Alignment explanation
Indices: 37503889--37504060 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
37503879 AGGATATTTG
* * * **
37503889 GGCATCTGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCCAACTCGTTGAG
37503954 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
37503982 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCCAGCTCGTTGAG
1 GGCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCCAACTCGTTGAG
37504047 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
37504061 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:37507061 original size:15 final size:15
Alignment explanation
Indices: 37507022--37507104 Score: 82
Period size: 15 Copynumber: 5.7 Consensus size: 15
37507012 GTATATTGGG
* *
37507022 TTTCTTTATCCTAGA
1 TTTCTTTATTCTGGA
*
37507037 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
37507052 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
37507067 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
37507082 TTTCTTTATTC-GG-
1 TTTCTTTATTCTGGA
*
37507095 TTTTTTTATT
1 TTTCTTTATT
37507105 ATCTTTGTTC
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
13 9 0.16
14 4 0.07
15 42 0.74
16 2 0.04
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:37507088 original size:45 final size:43
Alignment explanation
Indices: 37507018--37507104 Score: 111
Period size: 45 Copynumber: 2.0 Consensus size: 43
37507008 TATCGTATAT
*
37507018 TGGGTTTCTTTATCCTAGATCTCTTTATTCTGGATTTCTTTATTC
1 TGGGTTTCTCTATCCTAGATCTCTTTATTC-GG-TTTCTTTATTC
* * * *
37507063 TGGGTTTCTCTATCTTGGATTTCTTTATTCGGTTTTTTTATT
1 TGGGTTTCTCTATCCTAGATCTCTTTATTCGGTTTCTTTATT
37507105 ATCTTTGTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 9 0.24
44 2 0.05
45 26 0.70
ACGTcount: A:0.11, C:0.15, G:0.15, T:0.59
Consensus pattern (43 bp):
TGGGTTTCTCTATCCTAGATCTCTTTATTCGGTTTCTTTATTC
Found at i:37509505 original size:46 final size:44
Alignment explanation
Indices: 37509452--37509627 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 44
37509442 TATTTGGGCA
37509452 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* *** * *
37509498 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAG
* *
37509545 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* * *
37509591 CCCCAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37509628 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:37509607 original size:93 final size:93
Alignment explanation
Indices: 37509448--37509619 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
37509438 AGGATATTTG
* * * *
37509448 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCCAACTCGTTGAG
*
37509513 TTGAGTTCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
37509541 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTGAACGCCCCAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCCAACTCGTTGAG
37509606 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
37509620 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:37518613 original size:15 final size:14
Alignment explanation
Indices: 37518586--37518619 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
37518576 CCCCCCCCCC
37518586 AAAA-AAAAAAAAA
1 AAAAGAAAAAAAAA
37518599 AAAAGAAAAAGAAAA
1 AAAAGAAAAA-AAAA
37518614 AAAAGA
1 AAAAGA
37518620 GGCAGACAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.21
14 5 0.26
15 10 0.53
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAAAAA
Found at i:37530695 original size:42 final size:43
Alignment explanation
Indices: 37530636--37530731 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 43
37530626 TGAGATTTAT
* * *
37530636 GTGTAAGACCATGTCTGGGACATTGGCATC-ATATCTG-ATTTC
1 GTGTAAGACCATATCTGGGACAGTGGCATCGATA-CTGAATTAC
*
37530678 GTGTAAGACCCTATCTGGGACAGTGGCATCGATACTGAATTAC
1 GTGTAAGACCATATCTGGGACAGTGGCATCGATACTGAATTAC
*
37530721 ATGTAAGACCA
1 GTGTAAGACCA
37530732 CGTCCGGGAC
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 30 0.65
43 16 0.35
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATATCTGGGACAGTGGCATCGATACTGAATTAC
Found at i:37530741 original size:43 final size:42
Alignment explanation
Indices: 37530637--37530749 Score: 115
Period size: 42 Copynumber: 2.7 Consensus size: 42
37530627 GAGATTTATG
* * * *
37530637 TGTAAGACCATGTCTGGGACATTGGCATCATATCTGATTTCG
1 TGTAAGACCACGTCTGGGACAGTGGCATCATATCTGATTACA
*
37530679 TGTAAGACC-CTATCTGGGACAGTGGCATCGATA-CTGAATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATC-ATATCTG-ATTACA
*
37530722 TGTAAGACCACGTCCGGGAC-GTTGGCAT
1 TGTAAGACCACGTCTGGGACAG-TGGCAT
37530750 TGTACGCGTT
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
42 29 0.49
43 29 0.49
44 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCATATCTGATTACA
Found at i:37537939 original size:29 final size:29
Alignment explanation
Indices: 37537873--37537963 Score: 116
Period size: 29 Copynumber: 3.2 Consensus size: 29
37537863 AAGTCTACAT
* *
37537873 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
37537901 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
37537930 ACATTCATATGGCCTATCTA-GCCCAAATC
1 ACATTCATATGGCCCAT-TAGGCCCAAATC
37537959 A-ATTC
1 ACATTC
37537964 CAAGCCATGT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
28 25 0.45
29 29 0.52
30 2 0.04
ACGTcount: A:0.30, C:0.32, G:0.13, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:37542068 original size:43 final size:42
Alignment explanation
Indices: 37542016--37542174 Score: 139
Period size: 43 Copynumber: 3.8 Consensus size: 42
37542006 ATATGTTTTC
* *
37542016 TCGTGTAAGATCACGTCTGGGACGTTAGCATTGGTATGTGAT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATTGGTATGTGAT
* * * *
37542058 TACGTGTAAGACCATGTCTGGGACATCT-GCA-TCGTATTTGAT
1 T-CGTGTAAGACCACGTCTGGGACGT-TGGCATTGGTATGTGAT
* *
37542100 TCGTGTAAGACCCAAC--CTGGGACAG-TGGCATCGATATGTGAT
1 TCGTGTAAGA-CC-ACGTCTGGGAC-GTTGGCATTGGTATGTGAT
* *
37542142 TGCATGTAAGACCACGTCTGGAACGTTGGCATT
1 T-CGTGTAAGACCACGTCTGGGACGTTGGCATT
37542175 ATACGATATG
Statistics
Matches: 92, Mismatches: 14, Indels: 21
0.72 0.11 0.17
Matches are distributed among these distances:
40 1 0.01
41 21 0.23
42 24 0.26
43 45 0.49
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATTGGTATGTGAT
Found at i:37542120 original size:41 final size:43
Alignment explanation
Indices: 37542049--37542154 Score: 112
Period size: 41 Copynumber: 2.5 Consensus size: 43
37542039 GTTAGCATTG
** *
37542049 GTATGTGATTACGTGTAAGA-CCATGTCTGGGACA-TCTGCATC
1 GTATGTGATTACGTGTAAGACCCATACCTGGGACAGT-GGCATC
*
37542091 GTATTTGATT-CGTGTAAGACCCA-ACCTGGGACAGTGGCATC
1 GTATGTGATTACGTGTAAGACCCATACCTGGGACAGTGGCATC
* *
37542132 GATATGTGATTGCATGTAAGACC
1 G-TATGTGATTACGTGTAAGACC
37542155 ACGTCTGGAA
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
41 23 0.43
42 21 0.39
43 10 0.19
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (43 bp):
GTATGTGATTACGTGTAAGACCCATACCTGGGACAGTGGCATC
Found at i:37546854 original size:48 final size:49
Alignment explanation
Indices: 37546797--37546974 Score: 188
Period size: 48 Copynumber: 3.7 Consensus size: 49
37546787 TACGAGATGT
*
37546797 GTCAGTGTAAGACTATGTCTGGGACATGGCATCGGCACGT-G-TAGAGATA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-C-TCGATAGAGATA
* ***
37546846 -TCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGATA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAGAGATA
* * **
37546894 GTCAGTGTAAGACCATGTTTGGGACATGGCATC-GACTTAAT-G-GATAA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAGAGAT-A
* *
37546941 GCCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCG
37546975 ACATTACACC
Statistics
Matches: 110, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
46 4 0.04
47 33 0.30
48 43 0.39
49 30 0.27
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (49 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAGAGATA
Found at i:37546966 original size:47 final size:48
Alignment explanation
Indices: 37546658--37546976 Score: 180
Period size: 47 Copynumber: 6.8 Consensus size: 48
37546648 ACATTATGAA
* * * * * * * *
37546658 AGCCATTGTAAGACCATGTTTGGGACATGACATTGGCTTTGAGA-CGAG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TCGATATCGAT
* *
37546706 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG-TGAT-G-T
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAT-ATCGAT
** * * * *
37546751 AAGCCAACGTAAGA-CATGCCTGGGACAT-ACATCGATTACGAGAT-G-T
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGATATCGAT
* * * * * **
37546797 -GTCAGTGTAAGACTATGTCTGGGACATGGCATCGGCACGTGTAGAGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCG-ATATCGAT
* * * *
37546845 A-TCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGATATCGAT
* * * *
37546893 AGTCAGTGTAAGACCATGTTTGGGACATGGCATCGACT-TA-ATGGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATATCGAT
*
37546939 AAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGAC
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
37546977 ATTACACCCT
Statistics
Matches: 210, Mismatches: 46, Indels: 31
0.73 0.16 0.11
Matches are distributed among these distances:
44 9 0.04
45 16 0.08
46 50 0.24
47 51 0.24
48 50 0.24
49 34 0.16
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATATCGAT
Found at i:37549563 original size:23 final size:22
Alignment explanation
Indices: 37549511--37549563 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
37549501 TCCACGTCTT
*
37549511 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
37549533 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
37549556 TTTCTTTT
1 TTTCTTTT
37549564 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:37552362 original size:36 final size:36
Alignment explanation
Indices: 37552322--37552393 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
37552312 ATAATTACCC
*
37552322 TAAATTTTCTTTCTCTCCATGCTTATTTGTACTTTA
1 TAAATTTTCTTTCTCTCCACGCTTATTTGTACTTTA
* *
37552358 TAAATTTTCTTTCTCTCTACGCTTATTTGTGCTTTA
1 TAAATTTTCTTTCTCTCCACGCTTATTTGTACTTTA
37552394 CTCGGACACT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.18, C:0.19, G:0.07, T:0.56
Consensus pattern (36 bp):
TAAATTTTCTTTCTCTCCACGCTTATTTGTACTTTA
Found at i:37563835 original size:93 final size:93
Alignment explanation
Indices: 37563676--37563847 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
37563666 CGCCCATAAG
* * *
37563676 CGAACTCGAACTCAACTCTACGAGCTCAGGCGTTCGCATCCATGAGTGAACTCAGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
37563741 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
37563769 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGAACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCAGACTCAACTC
37563833 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
37563848 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:37563837 original size:46 final size:46
Alignment explanation
Indices: 37563669--37563844 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
37563659 TGTAACCCGC
* * * * *
37563669 CCATAAGCGAACTCGAACTCAACTCTACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCAT
* * * * *
37563715 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
37563765 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
37563808 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
37563845 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 57 0.54
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:37563863 original size:46 final size:45
Alignment explanation
Indices: 37563720--37563863 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 45
37563710 CGCATCCATG
*
37563720 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * *
37563767 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
37563813 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
37563859 AGTGA
1 AGTGA
37563864 CATGTCACTT
Statistics
Matches: 78, Mismatches: 9, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 33 0.42
47 30 0.38
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:37575341 original size:29 final size:29
Alignment explanation
Indices: 37575308--37575381 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
37575298 GTTGTGAGAT
* *
37575308 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
37575337 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
37575366 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37575382 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:37583349 original size:29 final size:29
Alignment explanation
Indices: 37583316--37583389 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
37583306 GTTGTGAGAT
* *
37583316 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
37583345 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
37583374 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37583390 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:37585668 original size:39 final size:40
Alignment explanation
Indices: 37585606--37585683 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 40
37585596 CTGAGCCAAC
*
37585606 TGAAATACGCCAAATAGAAGCTCATAAGAGCTGGTCCACA
1 TGAAACACGCCAAATAGAAGCTCATAAGAGCTGGTCCACA
37585646 TGAAACACGCC-AATAGAAGCTCATAAGAGCTGGTCCAC
1 TGAAACACGCCAAATAGAAGCTCATAAGAGCTGGTCCAC
37585684 CCGAATCACA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 27 0.73
40 10 0.27
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (40 bp):
TGAAACACGCCAAATAGAAGCTCATAAGAGCTGGTCCACA
Found at i:37588656 original size:38 final size:38
Alignment explanation
Indices: 37588605--37588685 Score: 126
Period size: 38 Copynumber: 2.1 Consensus size: 38
37588595 ATATTTGATG
* * *
37588605 TATATCCGGGTTAAATCCCGAAGGCTTCGTGCTGGTAT
1 TATATCCAGGTTAAATCCCGAAGGCCTAGTGCTGGTAT
*
37588643 TATATCCAGGTTAAATCCCGTAGGCCTAGTGCTGGTAT
1 TATATCCAGGTTAAATCCCGAAGGCCTAGTGCTGGTAT
37588681 TATAT
1 TATAT
37588686 TCGGGCCTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.33
Consensus pattern (38 bp):
TATATCCAGGTTAAATCCCGAAGGCCTAGTGCTGGTAT
Found at i:37592179 original size:40 final size:40
Alignment explanation
Indices: 37592124--37592337 Score: 394
Period size: 40 Copynumber: 5.4 Consensus size: 40
37592114 CGGGTGTAAC
*
37592124 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
37592164 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
37592204 AACCCGCATGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
37592244 AA-CCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
37592283 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
37592323 AACCCGCACGAATGC
1 AACCCGCACGAATGC
37592338 TATGCACATA
Statistics
Matches: 170, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
39 38 0.22
40 132 0.78
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:37592282 original size:79 final size:79
Alignment explanation
Indices: 37592124--37592337 Score: 392
Period size: 79 Copynumber: 2.7 Consensus size: 79
37592114 CGGGTGTAAC
*
37592124 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCAGCACGAATGCCTTCGGGACT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACC-GCACGAATGCCTTCGGGACT
37592189 TAACCCGGTTATAAT
65 TAACCCGGTTATAAT
*
37592204 AACCCGCATGAATGCCTTCGGGACTTAACCCGGTTATAATAACCGCACGAATGCCTTCGGGACTT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCGCACGAATGCCTTCGGGACTT
37592269 AACCCGGTTATAAT
66 AACCCGGTTATAAT
37592283 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAATGC
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAA-CCGCACGAATGC
37592338 TATGCACATA
Statistics
Matches: 130, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
79 76 0.58
80 54 0.42
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (79 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCGCACGAATGCCTTCGGGACTT
AACCCGGTTATAAT
Found at i:37595519 original size:42 final size:42
Alignment explanation
Indices: 37595398--37595519 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
37595388 TATCGTACTA
* * * *
37595398 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATACCCCAGATATGGTCTTACACGTAATCTCATATCG
* * *
37595440 ATCCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATACCCCAGATATGGTCTTACACGTAA-TCTCATATCG
* *
37595483 ATGCCATACCCCAGATATAGTCTTGCACGTAATCTCA
1 ATGCCATACCCCAGATATGGTCTTACACGTAATCTCA
37595520 GTAACCCTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 31 0.47
43 35 0.53
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATACCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:37608638 original size:28 final size:28
Alignment explanation
Indices: 37608607--37608702 Score: 97
Period size: 28 Copynumber: 3.4 Consensus size: 28
37608597 TATAGTCTCT
*
37608607 TTTATTTTATTTCATTATTATTCATT-TC
1 TTTATTTTATTT-ATTATTATTTATTATC
* * *
37608635 TTTATTTTCTTTATT-TCATTTATTAGC
1 TTTATTTTATTTATTATTATTTATTATC
* *
37608662 TTTTATTTTTTTTATTTATTATTTATTCTC
1 -TTTATTTTATTTA-TTATTATTTATTATC
37608692 TTTATTTTATT
1 TTTATTTTATT
37608703 CTCAGTTTAC
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
26 7 0.13
27 4 0.07
28 23 0.42
29 12 0.22
30 9 0.16
ACGTcount: A:0.19, C:0.08, G:0.01, T:0.72
Consensus pattern (28 bp):
TTTATTTTATTTATTATTATTTATTATC
Found at i:37608639 original size:15 final size:13
Alignment explanation
Indices: 37608607--37608702 Score: 59
Period size: 15 Copynumber: 6.8 Consensus size: 13
37608597 TATAGTCTCT
37608607 TTTATTTTATTTC
1 TTTATTTTATTTC
*
37608620 ATTATTATTCATTTC
1 TTTATT-TT-ATTTC
* *
37608635 TTTATTTTCTTTA
1 TTTATTTTATTTC
*
37608648 TTTCA-TTTATTAGC
1 TTT-ATTTTATT-TC
* *
37608662 TTTTATTTTTTTTA
1 -TTTATTTTATTTC
37608676 TTTATTATTTATTCTC
1 TTTA-T-TTTATT-TC
37608692 TTTATTTTATT
1 TTTATTTTATT
37608703 CTCAGTTTAC
Statistics
Matches: 62, Mismatches: 12, Indels: 17
0.68 0.13 0.19
Matches are distributed among these distances:
13 20 0.32
14 13 0.21
15 24 0.39
16 5 0.08
ACGTcount: A:0.19, C:0.08, G:0.01, T:0.72
Consensus pattern (13 bp):
TTTATTTTATTTC
Found at i:37608645 original size:9 final size:9
Alignment explanation
Indices: 37608631--37608699 Score: 50
Period size: 9 Copynumber: 7.3 Consensus size: 9
37608621 TTATTATTCA
37608631 TTTCTTTAT
1 TTTCTTTAT
37608640 TTTCTTTA-
1 TTTCTTTAT
37608648 TTTCATTTAT
1 TTTC-TTTAT
**
37608658 TAGCTTTTAT
1 TTTC-TTTAT
*
37608668 TTTTTTTATT
1 TTTCTTTA-T
*
37608678 TATTATTTAT
1 T-TTCTTTAT
*
37608688 TCTCTTTAT
1 TTTCTTTAT
37608697 TTT
1 TTT
37608700 ATTCTCAGTT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
8 4 0.09
9 24 0.52
10 12 0.26
11 6 0.13
ACGTcount: A:0.16, C:0.09, G:0.01, T:0.74
Consensus pattern (9 bp):
TTTCTTTAT
Found at i:37608680 original size:32 final size:33
Alignment explanation
Indices: 37608606--37608688 Score: 84
Period size: 32 Copynumber: 2.6 Consensus size: 33
37608596 TTATAGTCTC
* *
37608606 TTTTATTTTATTTCA-TTATTATTCATTTCTTTA
1 TTTTA-TTTATTTCATTTATTATGCATTTATTTA
* * *
37608639 TTTTCTTTATTTCATTTATTA-GCTTTTATTTT
1 TTTTATTTATTTCATTTATTATGCATTTATTTA
37608671 TTTTATTTA-TT-ATTTATT
1 TTTTATTTATTTCATTTATT
37608689 CTCTTTATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
30 7 0.16
31 2 0.05
32 24 0.56
33 10 0.23
ACGTcount: A:0.19, C:0.07, G:0.01, T:0.72
Consensus pattern (33 bp):
TTTTATTTATTTCATTTATTATGCATTTATTTA
Found at i:37610351 original size:6 final size:6
Alignment explanation
Indices: 37610305--37610332 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
37610295 CTTTGAGTCC
37610305 TTTTTA TTTTTA TTTTTA TTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTT
37610333 AAAATCTGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:37611854 original size:20 final size:20
Alignment explanation
Indices: 37611829--37611896 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
37611819 AGAAGAATTT
37611829 ATTTTGATTGTGAGTTGAGG
1 ATTTTGATTGTGAGTTGAGG
* * * ** **
37611849 ATTTTGCTTGAGGGCAGAATTT
1 ATTTTGATTGTGAGTTG-A-GG
37611871 ATTTTGATTGTGAGTTGAGG
1 ATTTTGATTGTGAGTTGAGG
37611891 ATTTTG
1 ATTTTG
37611897 CTTAAGGACA
Statistics
Matches: 32, Mismatches: 14, Indels: 4
0.64 0.28 0.08
Matches are distributed among these distances:
20 18 0.56
21 2 0.06
22 12 0.38
ACGTcount: A:0.21, C:0.03, G:0.31, T:0.46
Consensus pattern (20 bp):
ATTTTGATTGTGAGTTGAGG
Found at i:37615722 original size:46 final size:46
Alignment explanation
Indices: 37615669--37615797 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 46
37615659 TATTTGGGCA
*
37615669 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
37615715 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
37615761 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37615798 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
45 4 0.05
46 73 0.95
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:37618765 original size:50 final size:50
Alignment explanation
Indices: 37618690--37618973 Score: 239
Period size: 50 Copynumber: 5.6 Consensus size: 50
37618680 TTGGTATGCA
* * * *
37618690 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACTCG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* ** * * ** *
37618740 TAGTAGCCTGCACTTAGCACTACACACGTGATCGAAGTTAA-CGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGGTACACG
* * * * * * *
37618791 TATTAGCCTACACTTAGTCCTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* ** * * * *
37618841 TAGTATCCTGCACTTAGTACTACACACGTGATCGAAGTTAAT-GGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGGTACACG
***
37618892 TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* *
37618942 AAGTAGCCTACACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
37618974 TCACAACGGA
Statistics
Matches: 175, Mismatches: 53, Indels: 12
0.73 0.22 0.05
Matches are distributed among these distances:
49 5 0.03
50 97 0.55
51 68 0.39
52 5 0.03
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
Found at i:37618806 original size:51 final size:51
Alignment explanation
Indices: 37618740--37618917 Score: 182
Period size: 51 Copynumber: 3.5 Consensus size: 51
37618730 CTAGTACTCG
*
37618740 TAGTAGCCTGCACTTAGCACTACACACGTGATCGAAGTTAACGGGTATGCA
1 TAGTAGCCTGCACTTAGCACTACACACGTGATCGAAGTTAACGGGTACGCA
* * * ** * * * * *
37618791 TATTAGCCTACACTTAGTC-CTACACACGTGA-CTTAA-CCATCTGATACACG
1 TAGTAGCCTGCACTTAG-CACTACACACGTGATC-GAAGTTAACGGGTACGCA
* * *
37618841 TAGTATCCTGCACTTAGTACTACACACGTGATCGAAGTTAATGGGTACGCA
1 TAGTAGCCTGCACTTAGCACTACACACGTGATCGAAGTTAACGGGTACGCA
*
37618892 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGCACTACACA
37618918 TACGACCTAT
Statistics
Matches: 97, Mismatches: 25, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
50 35 0.36
51 61 0.63
52 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACTTAGCACTACACACGTGATCGAAGTTAACGGGTACGCA
Found at i:37618851 original size:101 final size:101
Alignment explanation
Indices: 37618682--37618972 Score: 413
Period size: 101 Copynumber: 2.9 Consensus size: 101
37618672 GAAGCTCTTT
*
37618682 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCT-AGTACTCGTAGTAG
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGA-TACACGTAGTAG
*
37618746 CCTGCACTTAGCACTACACACGTGATCGAAGTTAACG
65 CCTGCACTTAGTACTACACACGTGATCGAAGTTAACG
* * * * * * * * *
37618783 GGTATGCATATTAGCCTACACTTAGTCCTACACACGTGACTTAACCATCTGATACACGTAGTATC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGC
*
37618848 CTGCACTTAGTACTACACACGTGATCGAAGTTAATG
66 CTGCACTTAGTACTACACACGTGATCGAAGTTAACG
* * * *
37618884 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACACGAAGTAGC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGC
*
37618949 CTACACTTAGTACTACACACGTGA
66 CTGCACTTAGTACTACACACGTGA
37618973 CTCACAACGG
Statistics
Matches: 163, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
101 162 0.99
102 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (101 bp):
GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGC
CTGCACTTAGTACTACACACGTGATCGAAGTTAACG
Found at i:37619350 original size:19 final size:20
Alignment explanation
Indices: 37619322--37619368 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
37619312 AAGAACATGT
37619322 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
37619343 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
37619362 TATATAT
1 TATATAT
37619369 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:37623384 original size:28 final size:28
Alignment explanation
Indices: 37623310--37623391 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
37623300 GATTTTAAAT
* *
37623310 AATATCCTTTGTGGTAAGCTATGAAAAG
1 AATAGCCTTTGTGGTAAACTATGAAAAG
* * *
37623338 AATAGTCATTGTGGCAAACTATGAAAAG
1 AATAGCCTTTGTGGTAAACTATGAAAAG
* *
37623366 AATAGCCTTTGCGGTAAACTCTGAAA
1 AATAGCCTTTGTGGTAAACTATGAAA
37623392 GGGATGCCTC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (28 bp):
AATAGCCTTTGTGGTAAACTATGAAAAG
Found at i:37634751 original size:56 final size:56
Alignment explanation
Indices: 37634684--37634797 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
37634674 AATGATTGAA
37634684 AAATGACAAATGATTCACTAGATTTACTCATTGGAGTATTAGGTGCTTCTTAGTTT
1 AAATGACAAATGATTCACTAGATTTACTCATTGGAGTATTAGGTGCTTCTTAGTTT
*
37634740 AAATGACAAATGGTTCACTAGATTTACTCATTGGAGTATTAGGTGCTTCTTAGTTT
1 AAATGACAAATGATTCACTAGATTTACTCATTGGAGTATTAGGTGCTTCTTAGTTT
37634796 AA
1 AA
37634798 TGATAAGTTT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (56 bp):
AAATGACAAATGATTCACTAGATTTACTCATTGGAGTATTAGGTGCTTCTTAGTTT
Found at i:37634898 original size:100 final size:99
Alignment explanation
Indices: 37634773--37634971 Score: 335
Period size: 100 Copynumber: 2.0 Consensus size: 99
37634763 TTACTCATTG
* * *
37634773 GAGTATTAGGTGCTTCTTAGTTTAATGATAAGTTTGATTTAAGATTAATTTAGTCACTTTGAATA
1 GAGTATTAGGTACTTCTTAGCTTAATGATAAGTTTGATTTAAGATTAATTTAATCACTTTGAATA
37634838 TTTATTTAATAAAATAAATAATGATTCTAAAATA
66 TTTATTTAATAAAATAAATAATGATTCTAAAATA
* *
37634872 GAGTATTAGGTACTTTCTTAGCTTAATGATAAGTTTGATTTAGGGTTAATTTAATCACTTTGAAT
1 GAGTATTAGGTAC-TTCTTAGCTTAATGATAAGTTTGATTTAAGATTAATTTAATCACTTTGAAT
*
37634937 ATTTATTTAATAGAATAAATAATGATTCTAAAATA
65 ATTTATTTAATAAAATAAATAATGATTCTAAAATA
37634972 AAGCTAAATT
Statistics
Matches: 93, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
99 12 0.13
100 81 0.87
ACGTcount: A:0.38, C:0.06, G:0.14, T:0.43
Consensus pattern (99 bp):
GAGTATTAGGTACTTCTTAGCTTAATGATAAGTTTGATTTAAGATTAATTTAATCACTTTGAATA
TTTATTTAATAAAATAAATAATGATTCTAAAATA
Found at i:37638007 original size:5 final size:5
Alignment explanation
Indices: 37637997--37638031 Score: 52
Period size: 5 Copynumber: 6.6 Consensus size: 5
37637987 GGAGTTGTGA
37637997 AAAAT AAAAT AAAAT AAAAT AAAAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT --AAAAT AAAAT AAA
37638032 GAACACATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 23 0.82
7 5 0.18
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:37642463 original size:12 final size:12
Alignment explanation
Indices: 37642446--37642470 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37642436 TGTGAAAAAT
37642446 AAAATAAAATAA
1 AAAATAAAATAA
37642458 AAAATAAAATAA
1 AAAATAAAATAA
37642470 A
1 A
37642471 GAACACACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:37661438 original size:40 final size:40
Alignment explanation
Indices: 37661383--37661575 Score: 291
Period size: 40 Copynumber: 4.8 Consensus size: 40
37661373 GGATATAGCT
37661383 ACTCGC-CAAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
1 ACTCGCAC-AAATGCCTTCGGGACTTAGCCCGGTCATAGTA
*
37661423 ACTCGCACAAATGCCTTCGGGACTTAACCCGGTCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
* *
37661463 ACTCGCACAAATGCCTTCGGGACTTAACCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
* * *
37661503 ACTCGCACAATTGCCTTCGGGACTTAGCCCGG-AATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCA-TAGTA
*
37661543 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
37661576 TATTATCTGA
Statistics
Matches: 142, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 1 0.01
40 140 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
Found at i:37665857 original size:18 final size:17
Alignment explanation
Indices: 37665828--37665869 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
37665818 TAATTATTAG
37665828 TTTTATTATTATGTTT-A
1 TTTTATTATTAT-TTTCA
*
37665845 TTTCTATTTTTATTTTCA
1 TTT-TATTATTATTTTCA
37665863 TTTTATT
1 TTTTATT
37665870 GTACTCTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (17 bp):
TTTTATTATTATTTTCA
Found at i:37665913 original size:15 final size:15
Alignment explanation
Indices: 37665892--37665931 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
37665882 TTCTCTTTCT
*
37665892 TTTTTTTTGTTTTTTG
1 TTTTTTTT-TTGTTTG
37665908 TTTTTTTTTTGTTTG
1 TTTTTTTTTTGTTTG
37665923 TTTCTTTTT
1 TTT-TTTTT
37665932 CTTTTCTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.88
Consensus pattern (15 bp):
TTTTTTTTTTGTTTG
Done.