Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 117 of 250
Found at i:37665915 original size:19 final size:19
Alignment explanation
Indices: 37665887--37665936 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
37665877 AGACGTTCTC
37665887 TTTC-TTTTTTTTTGTTT-
1 TTTCTTTTTTTTTTGTTTG
*
37665904 TTTGTTTTTTTTTTGTTTG
1 TTTCTTTTTTTTTTGTTTG
37665923 TTTCTTTTTCTTTT
1 TTTCTTTTT-TTTT
37665937 CTGAAAATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 3 0.11
18 13 0.46
19 8 0.29
20 4 0.14
ACGTcount: A:0.00, C:0.06, G:0.08, T:0.86
Consensus pattern (19 bp):
TTTCTTTTTTTTTTGTTTG
Found at i:37669489 original size:13 final size:13
Alignment explanation
Indices: 37669471--37669495 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37669461 ACAAACGATA
37669471 AAATTTTCACACG
1 AAATTTTCACACG
37669484 AAATTTTCACAC
1 AAATTTTCACAC
37669496 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:37674597 original size:12 final size:12
Alignment explanation
Indices: 37674580--37674604 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37674570 GAACTAAAAC
37674580 AACCAACAATTT
1 AACCAACAATTT
37674592 AACCAACAATTT
1 AACCAACAATTT
37674604 A
1 A
37674605 CATCTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (12 bp):
AACCAACAATTT
Found at i:37683054 original size:43 final size:42
Alignment explanation
Indices: 37683007--37683100 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 42
37682997 TCCTAGACAT
*
37683007 GGTCTTACATGTAATCACATAT-CGATGCC-ACTGTCCAAAACAG
1 GGTCTTACAAG-AA-CACATATACGATGCCGA-TGTCCAAAACAG
* * * *
37683050 GGTCTTACAAGAACTCATATACGATGCCGATGTCCCAGACAT
1 GGTCTTACAAGAACACATATACGATGCCGATGTCCAAAACAG
37683092 GGTCTTACA
1 GGTCTTACA
37683101 CCTAAATCAC
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
41 6 0.14
42 27 0.61
43 11 0.25
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
GGTCTTACAAGAACACATATACGATGCCGATGTCCAAAACAG
Found at i:37684288 original size:13 final size:13
Alignment explanation
Indices: 37684270--37684294 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37684260 ACAAACGATA
37684270 AAATTTTCACACG
1 AAATTTTCACACG
37684283 AAATTTTCACAC
1 AAATTTTCACAC
37684295 ATAGAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:37685623 original size:12 final size:12
Alignment explanation
Indices: 37685606--37685630 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37685596 CTCGGACAGT
37685606 CTCGGTTTAAAA
1 CTCGGTTTAAAA
37685618 CTCGGTTTAAAA
1 CTCGGTTTAAAA
37685630 C
1 C
37685631 AAGCTTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (12 bp):
CTCGGTTTAAAA
Found at i:37686099 original size:18 final size:18
Alignment explanation
Indices: 37686076--37686111 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
37686066 TCCAAGGAGG
*
37686076 AGTGTTATAATTTCTTAT
1 AGTGTTATAATATCTTAT
37686094 AGTGTTATAATATCTTAT
1 AGTGTTATAATATCTTAT
37686112 TAAGTAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.11, T:0.53
Consensus pattern (18 bp):
AGTGTTATAATATCTTAT
Found at i:37699496 original size:4 final size:4
Alignment explanation
Indices: 37699479--37699555 Score: 136
Period size: 4 Copynumber: 19.2 Consensus size: 4
37699469 TTACTACTAA
*
37699479 TATG TATA TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
37699527 TATG TATG TATC TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG T
37699556 TTTTTTTAAG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 69 1.00
ACGTcount: A:0.26, C:0.01, G:0.22, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:37702791 original size:20 final size:20
Alignment explanation
Indices: 37702731--37702782 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
37702721 CTCACTTCTC
* *
37702731 CCACACCCGTGTATGTATGT
1 CCACGCCCGTGTATGAATGT
37702751 CCACGCCCGTGTATGAATGT
1 CCACGCCCGTGTATGAATGT
37702771 CCACGCCCGTGT
1 CCACGCCCGTGT
37702783 TTTTTTGTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.17, C:0.35, G:0.23, T:0.25
Consensus pattern (20 bp):
CCACGCCCGTGTATGAATGT
Found at i:37706083 original size:49 final size:49
Alignment explanation
Indices: 37705956--37706200 Score: 319
Period size: 49 Copynumber: 4.9 Consensus size: 49
37705946 TCTATTGTGA
* **
37705956 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
37706005 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
37706055 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCTGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-T
* * * *
37706106 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
37706155 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
37706201 GCTTCGGCTA
Statistics
Matches: 167, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
49 82 0.49
50 46 0.28
51 39 0.23
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:37706144 original size:100 final size:99
Alignment explanation
Indices: 37705956--37706198 Score: 353
Period size: 100 Copynumber: 2.4 Consensus size: 99
37705946 TCTATTGTGA
* * * *** *
37705956 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAACTTAGATCACATGTGTAGT
*
37706021 ACTAAGTGCAGGCTACTACGTGTACCGGATAATT
66 ACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
37706055 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCTGAAAACTGT-GATCACGTGTGTA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAG-AAACT-TAGATCACATGTGTA
*
37706119 GTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
64 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
37706155 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
37706199 TAGCTTCGGC
Statistics
Matches: 128, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
99 39 0.30
100 88 0.69
101 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (99 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAACTTAGATCACATGTGTAGT
ACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:37709276 original size:14 final size:15
Alignment explanation
Indices: 37709214--37709278 Score: 66
Period size: 15 Copynumber: 4.4 Consensus size: 15
37709204 GTATCTTAGG
37709214 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
37709229 TTTCTTTATTCT-GA
1 TTTCTTTATTCTGGA
37709243 GTTT-TTCTA-TCTTGGA
1 -TTTCTT-TATTC-TGGA
*
37709259 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
37709273 TTTCTT
1 TTTCTT
37709279 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
14 15 0.35
15 23 0.53
16 5 0.12
ACGTcount: A:0.11, C:0.12, G:0.12, T:0.65
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:37711579 original size:49 final size:49
Alignment explanation
Indices: 37711406--37711701 Score: 295
Period size: 49 Copynumber: 5.9 Consensus size: 49
37711396 TCTATTGTGA
* * * *
37711406 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-T
** * * * * * **
37711457 GACCTCGTGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGATGGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
37711506 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGCACCGGATAATT
1 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
37711556 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-T
* * * *
37711607 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
37711656 GGTCGTATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
37711702 GCTTCGGCTA
Statistics
Matches: 197, Mismatches: 45, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
49 81 0.41
50 42 0.21
51 74 0.38
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:37711634 original size:100 final size:100
Alignment explanation
Indices: 37711509--37711696 Score: 340
Period size: 100 Copynumber: 1.9 Consensus size: 100
37711499 GATGGTTAGG
*
37711509 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGCACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATAATTGGTCGCATGTGTAGTACT
37711574 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
* * *
37711609 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGTATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATAATTGGTCGCATGTGTAGTACT
37711674 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
37711697 AGATAGCTTC
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:37728923 original size:40 final size:39
Alignment explanation
Indices: 37728878--37729062 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
37728868 GCTACTCGTT
*
37728878 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCACA
* * * *
37728918 GAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGTTTAGTAACTCACA
* * *
37728958 CCAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCACA
* * * * * *
37728998 CCAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAACTCA-CA
37729039 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
37729063 ACATCATTCG
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 4 0.03
40 108 0.88
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCACA
Found at i:37738127 original size:93 final size:93
Alignment explanation
Indices: 37738015--37738186 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
37738005 GCCCATAAGT
* *
37738015 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37738080 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
37738108 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
37738173 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
37738187 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:37738182 original size:46 final size:46
Alignment explanation
Indices: 37738007--37738182 Score: 228
Period size: 46 Copynumber: 3.8 Consensus size: 46
37737997 TGTAACCCGC
* *
37738007 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * *
37738053 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCAT
* *** *
37738099 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
37738146 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
37738183 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
46 74 0.67
47 36 0.33
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:37743686 original size:8 final size:8
Alignment explanation
Indices: 37743652--37743684 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
37743642 TGTTTGGAAC
37743652 GGAAAA-G
1 GGAAAAGG
37743659 GGAAAAGG
1 GGAAAAGG
37743667 GGAAAAGG
1 GGAAAAGG
37743675 GGAAGAAGG
1 GGAA-AAGG
37743684 G
1 G
37743685 AAATAGACGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 6 0.25
8 13 0.54
9 5 0.21
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (8 bp):
GGAAAAGG
Found at i:37751518 original size:10 final size:10
Alignment explanation
Indices: 37751503--37751538 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
37751493 TTTTACTTTA
37751503 TTCAATTGTG
1 TTCAATTGTG
*
37751513 TTCAA-TATG
1 TTCAATTGTG
37751522 TTCAATTGTG
1 TTCAATTGTG
37751532 TTCAATT
1 TTCAATT
37751539 CATCAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.50
Consensus pattern (10 bp):
TTCAATTGTG
Found at i:37753662 original size:8 final size:8
Alignment explanation
Indices: 37753651--37753680 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
37753641 CCACTTTTTG
37753651 GCTTTTCA
1 GCTTTTCA
*
37753659 GCTTTTCG
1 GCTTTTCA
37753667 GCTTTTCA
1 GCTTTTCA
37753675 GCTTTT
1 GCTTTT
37753681 TCCGTTTCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.07, C:0.23, G:0.17, T:0.53
Consensus pattern (8 bp):
GCTTTTCA
Found at i:37753669 original size:16 final size:16
Alignment explanation
Indices: 37753644--37753680 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
37753634 CGACAGCCCA
*
37753644 CTTTTTGGCTTTTCAG
1 CTTTTCGGCTTTTCAG
37753660 CTTTTCGGCTTTTCAG
1 CTTTTCGGCTTTTCAG
37753676 CTTTT
1 CTTTT
37753681 TCCGTTTCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.05, C:0.22, G:0.16, T:0.57
Consensus pattern (16 bp):
CTTTTCGGCTTTTCAG
Found at i:37756178 original size:27 final size:27
Alignment explanation
Indices: 37756147--37756324 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37756137 TAAATTGTAC
*
37756147 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
37756174 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
37756200 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
37756228 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
37756255 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
37756283 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
37756310 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37756325 GACTTAATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 25 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:37756208 original size:54 final size:55
Alignment explanation
Indices: 37756147--37756324 Score: 227
Period size: 54 Copynumber: 3.3 Consensus size: 55
37756137 TAAATTGTAC
* **
37756147 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
37756202 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* *
37756255 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
37756310 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37756325 GACTTAATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 45 0.42
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:37764092 original size:27 final size:27
Alignment explanation
Indices: 37764061--37764211 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
37764051 TAAATTGTAC
*
37764061 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
37764088 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
37764114 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* * *
37764142 GGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
37764170 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
37764197 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37764212 GACTTAATAT
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
27 82 0.79
28 22 0.21
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:37764175 original size:82 final size:81
Alignment explanation
Indices: 37764062--37764211 Score: 221
Period size: 82 Copynumber: 1.8 Consensus size: 81
37764052 AAATTGTACA
*
37764062 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATAT-ATAGCACTAAGTG
37764126 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** * *
37764143 GCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTG
37764208 TGCG
65 TGCG
37764212 GACTTAATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.28
82 44 0.72
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37764202 original size:55 final size:53
Alignment explanation
Indices: 37764061--37764211 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 53
37764051 TAAATTGTAC
* *
37764061 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAAATGAATATG
* ** ** *
37764114 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGATTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGA-AATGAATATG
* * * *
37764169 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 -AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
37764212 GACTTAATAT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 38 0.47
55 41 0.51
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (53 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAAATGAATATG
Found at i:37775110 original size:25 final size:25
Alignment explanation
Indices: 37775082--37775134 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
37775072 TTGTGTGGGT
*
37775082 ATACTTATTCACAGCTCATTTGAGC
1 ATACTTATTCACAGCTCATGTGAGC
*
37775107 ATACTTATTCATAGCTCATGTGAGC
1 ATACTTATTCACAGCTCATGTGAGC
37775132 ATA
1 ATA
37775135 TATGTAAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (25 bp):
ATACTTATTCACAGCTCATGTGAGC
Found at i:37780381 original size:57 final size:57
Alignment explanation
Indices: 37780327--37780435 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 57
37780317 TTGTATATAG
* *
37780327 CCCACTAGGCCC-AATCTCTTTCATATGGCCCATGAGGCCCAAATCACATTTATATGT
1 CCCACTAGGCCCAAATCACATTCATATGG-CCATGAGGCCCAAATCACATTTATATGT
* *
37780384 CCCATTAGGCCCAAATCACATTCATATGGCCATTAGGCCCAAATCACATTTA
1 CCCACTAGGCCCAAATCACATTCATATGGCCATGAGGCCCAAATCACATTTA
37780436 CAGTTATGCT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
57 33 0.70
58 14 0.30
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (57 bp):
CCCACTAGGCCCAAATCACATTCATATGGCCATGAGGCCCAAATCACATTTATATGT
Found at i:37780382 original size:29 final size:29
Alignment explanation
Indices: 37780320--37780435 Score: 148
Period size: 28 Copynumber: 4.1 Consensus size: 29
37780310 CACATACTTG
* * *
37780320 TATATAGCCCACTAGGCCC-AATCTC-TT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
37780347 TCATATGGCCCATGAGGCCCAAATCACATT
1 T-ATATGGCCCATTAGGCCCAAATCACATT
*
37780377 TATATGTCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
37780406 CATATGG-CCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
37780434 TA
1 TA
37780436 CAGTTATGCT
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
27 1 0.01
28 37 0.48
29 36 0.47
30 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:37780431 original size:28 final size:28
Alignment explanation
Indices: 37780332--37780433 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 28
37780322 TATAGCCCAC
* *
37780332 TAGGCCC-AATCTCTTTCATATGGCCCAT
1 TAGGCCCAAATCACATTCATATGG-CCAT
* * *
37780360 GAGGCCCAAATCACATTTATATGTCCCAT
1 TAGGCCCAAATCACATTCATATG-GCCAT
37780389 TAGGCCCAAATCACATTCATATGGCCAT
1 TAGGCCCAAATCACATTCATATGGCCAT
37780417 TAGGCCCAAATCACATT
1 TAGGCCCAAATCACATT
37780434 TACAGTTATG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
28 27 0.42
29 37 0.58
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
TAGGCCCAAATCACATTCATATGGCCAT
Found at i:37786925 original size:19 final size:20
Alignment explanation
Indices: 37786901--37786941 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
37786891 GTGGGGATCT
37786901 GATGGAGTTACC-GCTTGAA
1 GATGGAGTTACCGGCTTGAA
37786920 GATGGAGTTACCGGCTTGAA
1 GATGGAGTTACCGGCTTGAA
37786940 GA
1 GA
37786942 ATTCGATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.27, C:0.15, G:0.34, T:0.24
Consensus pattern (20 bp):
GATGGAGTTACCGGCTTGAA
Found at i:37791592 original size:34 final size:34
Alignment explanation
Indices: 37791549--37791616 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
37791539 AAGACGTAGA
37791549 GTAATTGTTAGATCTAGCACCGCAAGGTGGTAAG
1 GTAATTGTTAGATCTAGCACCGCAAGGTGGTAAG
37791583 GTAATTGTTAGATCTAGCACCGCAAGGTGGTAAG
1 GTAATTGTTAGATCTAGCACCGCAAGGTGGTAAG
37791617 TAAGTTTGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (34 bp):
GTAATTGTTAGATCTAGCACCGCAAGGTGGTAAG
Found at i:37798779 original size:55 final size:55
Alignment explanation
Indices: 37798673--37798800 Score: 148
Period size: 55 Copynumber: 2.3 Consensus size: 55
37798663 CGAGCCTGCC
* * *
37798673 AAAACAACACAGGCGTGCGACACACCTGTGTGGAAGAACTATGGGCGAACCTATT
1 AAAATAACACAGGCGTGCGACACACCTGTGTGGAACAACTATGGGCAAACCTATT
* * * * * * *
37798728 AAAATAGCACAGGCGTTCGACACGCCTGTGTGGAACACCTGTGGTCAAACCTGTT
1 AAAATAACACAGGCGTGCGACACACCTGTGTGGAACAACTATGGGCAAACCTATT
*
37798783 AAATTAACACAGGGCGTG
1 AAAATAACACA-GGCGTG
37798801 AGGCTTGTAC
Statistics
Matches: 59, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
55 54 0.92
56 5 0.08
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (55 bp):
AAAATAACACAGGCGTGCGACACACCTGTGTGGAACAACTATGGGCAAACCTATT
Found at i:37800811 original size:6 final size:6
Alignment explanation
Indices: 37800800--37800829 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
37800790 TTAAAACCAC
37800800 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
37800830 GTATATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:37804680 original size:30 final size:30
Alignment explanation
Indices: 37804633--37804692 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
37804623 TTCCCGAGCC
37804633 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* * *
37804663 TAGGGGCAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGT-GTAATTATGCAAAAGTT
37804693 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.38, C:0.07, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:37805419 original size:49 final size:50
Alignment explanation
Indices: 37805339--37805584 Score: 307
Period size: 49 Copynumber: 4.9 Consensus size: 50
37805329 AGCTATTGTG
* *
37805339 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
37805389 -GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * * **
37805439 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
37805489 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
37805539 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
37805585 GCTTCGGCTA
Statistics
Matches: 167, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
49 81 0.49
50 48 0.29
51 38 0.23
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:37806434 original size:23 final size:23
Alignment explanation
Indices: 37806404--37806455 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
37806394 GTACAAATGA
37806404 GTTAGTTTTATTGTGGGAAGCAT
1 GTTAGTTTTATTGTGGGAAGCAT
37806427 GTTAGTTTTATTGTGGGAAGCAT
1 GTTAGTTTTATTGTGGGAAGCAT
37806450 GTTAGT
1 GTTAGT
37806456 AAATTGCTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.21, C:0.04, G:0.31, T:0.44
Consensus pattern (23 bp):
GTTAGTTTTATTGTGGGAAGCAT
Found at i:37820039 original size:16 final size:16
Alignment explanation
Indices: 37820018--37820050 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
37820008 AATGACAGAG
37820018 TATGAGGGAGAATTTT
1 TATGAGGGAGAATTTT
37820034 TATGAGGGAGAATTTT
1 TATGAGGGAGAATTTT
37820050 T
1 T
37820051 CAGGCTCAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.39
Consensus pattern (16 bp):
TATGAGGGAGAATTTT
Found at i:37827825 original size:40 final size:40
Alignment explanation
Indices: 37827778--37827963 Score: 293
Period size: 40 Copynumber: 4.7 Consensus size: 40
37827768 GCTACTCACC
37827778 CAAATGCCTTCGGGACTTAGCCCGGTCATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTCATAGTAACTCGCA
*
37827818 CAAATGCCTTCGGGACTTAACCCGGTCATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTCATAGTAACTCGCA
* *
37827858 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTCATAGTAACTCGCA
* * * *
37827898 CAATTGCCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTCA-TAGTAACTCGCA
37827938 CAAATGCCTTCGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGACTTAGCCCGGT
37827964 TATTATCCGA
Statistics
Matches: 136, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 135 0.99
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTCATAGTAACTCGCA
Found at i:37835988 original size:40 final size:40
Alignment explanation
Indices: 37835934--37836125 Score: 307
Period size: 40 Copynumber: 4.8 Consensus size: 40
37835924 GGATATAGCT
*
37835934 ACTCGCCCAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
*
37835974 ACTCGCACAAATGCCTTCGGGACTTAACCCGGTCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
*
37836014 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
* *
37836054 ACTCGCACAATTGCCTTCGGGACTTAGCCCGG--ATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCA-TAGTA
*
37836093 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
37836126 TATTATCCGA
Statistics
Matches: 142, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 34 0.24
40 107 0.75
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTCATAGTA
Found at i:37839446 original size:45 final size:45
Alignment explanation
Indices: 37839382--37839472 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
37839372 AATCCGAGAG
* * *
37839382 TAAGTTCATAAATATTATTAGTTAATATTTATGAGTTAAATATGT
1 TAAGTTAATAAATATTATTAGTTAATATTTACGAGTCAAATATGT
37839427 TAAGTTAATAAATATTATTAGTTAATATTTACGAGTCAAATATGT
1 TAAGTTAATAAATATTATTAGTTAATATTTACGAGTCAAATATGT
37839472 T
1 T
37839473 TTTAAAAAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.45
Consensus pattern (45 bp):
TAAGTTAATAAATATTATTAGTTAATATTTACGAGTCAAATATGT
Found at i:37839449 original size:17 final size:17
Alignment explanation
Indices: 37839384--37839453 Score: 62
Period size: 14 Copynumber: 4.5 Consensus size: 17
37839374 TCCGAGAGTA
*
37839384 AGTTCATAAATATTATT
1 AGTTAATAAATATTATT
*
37839401 AGTTAAT--AT-TTATG
1 AGTTAATAAATATTATT
* *
37839415 AGTTAA-ATATGTTA--
1 AGTTAATAAATATTATT
37839429 AGTTAATAAATATTATT
1 AGTTAATAAATATTATT
37839446 AGTTAATA
1 AGTTAATA
37839454 TTTACGAGTC
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
14 16 0.37
15 10 0.23
16 3 0.07
17 14 0.33
ACGTcount: A:0.43, C:0.01, G:0.10, T:0.46
Consensus pattern (17 bp):
AGTTAATAAATATTATT
Found at i:37846337 original size:57 final size:57
Alignment explanation
Indices: 37846275--37846423 Score: 149
Period size: 57 Copynumber: 2.6 Consensus size: 57
37846265 TTGACCTCAT
* * * *
37846275 TTATGAAAGGATTTAGCCTGGACGGGTAATCCTGATATAAATC-CTCTCGAGCATATG
1 TTATGAAAAGATTTAGCCTGGACGGGTAATCCT-AGATAAAGCTCTCTAGAGCATATG
** * * *
37846332 TTATGAATTTGATTTAGCCCGGACGGGTAATCC-AGATCAAGCTCTTTAGAGCATATG
1 TTATGAA-AAGATTTAGCCTGGACGGGTAATCCTAGATAAAGCTCTCTAGAGCATATG
* * *
37846389 TCATAAAAAAGATTTAGCCTGGACTGGTAATCCTA
1 TTAT-GAAAAGATTTAGCCTGGACGGGTAATCCTA
37846424 TTGTATACAT
Statistics
Matches: 74, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
56 6 0.08
57 43 0.58
58 25 0.34
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (57 bp):
TTATGAAAAGATTTAGCCTGGACGGGTAATCCTAGATAAAGCTCTCTAGAGCATATG
Found at i:37853985 original size:79 final size:81
Alignment explanation
Indices: 37853849--37854033 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
37853839 TTGAATGATG
*
37853849 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
37853913 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
37853928 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
37853990 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
37854008 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37854034 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:37854047 original size:40 final size:40
Alignment explanation
Indices: 37853850--37854033 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
37853840 TGAATGATGT
* * * *
37853850 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
37853890 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
37853930 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37853968 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37854009 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
37854034 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:37854055 original size:79 final size:79
Alignment explanation
Indices: 37853902--37854066 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
37853892 GGACTAAGAT
* **
37853902 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
37853967 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
37853981 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
37854044 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
37854060 CCGAAGG
1 CCGAAGG
37854067 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:37861061 original size:9 final size:9
Alignment explanation
Indices: 37861019--37861102 Score: 55
Period size: 9 Copynumber: 8.9 Consensus size: 9
37861009 TTAATTTTTT
*
37861019 AAATTTTAA
1 AAATTATAA
37861028 AAATTCA-AA
1 AAATT-ATAA
37861037 AATATTATAA
1 AA-ATTATAA
*
37861047 AGATTATAA
1 AAATTATAA
37861056 AAATTATTTAA
1 AAATTA--TAA
*
37861067 ATCATT-TAA
1 A-AATTATAA
*
37861076 AAAGTATAA
1 AAATTATAA
*
37861085 AGATTATAA
1 AAATTATAA
37861094 AAATATATA
1 AAAT-TATA
37861103 TTATTTTTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
8 2 0.03
9 39 0.67
10 10 0.17
11 4 0.07
12 3 0.05
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (9 bp):
AAATTATAA
Found at i:37861097 original size:29 final size:29
Alignment explanation
Indices: 37861025--37861099 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 29
37861015 TTTTAAATTT
* * *
37861025 TAAAAATT-CAAAAATATTATAAAGATTA
1 TAAAAATTATAAAAATATTATAAAAAGTA
**
37861053 TAAAAATTATTTAAATCATT-TAAAAAGTA
1 TAAAAATTATAAAAAT-ATTATAAAAAGTA
*
37861082 TAAAGATTATAAAAATAT
1 TAAAAATTATAAAAATAT
37861100 ATATTATTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
28 10 0.27
29 24 0.65
30 3 0.08
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.35
Consensus pattern (29 bp):
TAAAAATTATAAAAATATTATAAAAAGTA
Found at i:37861280 original size:3 final size:3
Alignment explanation
Indices: 37861272--37861300 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
37861262 AAAACATGCA
37861272 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
37861301 ATGAAAAGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:37861452 original size:15 final size:15
Alignment explanation
Indices: 37861434--37861464 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
37861424 CAATTTTGTG
37861434 TTAGTTTATTTTTCA
1 TTAGTTTATTTTTCA
37861449 TTAGTTTATTTTTCA
1 TTAGTTTATTTTTCA
37861464 T
1 T
37861465 ATCTTGCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.68
Consensus pattern (15 bp):
TTAGTTTATTTTTCA
Found at i:37871786 original size:40 final size:40
Alignment explanation
Indices: 37871706--37871847 Score: 150
Period size: 40 Copynumber: 3.5 Consensus size: 40
37871696 AATGATGTCT
* *
37871706 GGGCTAAGTCTCGAAGGC-TTTGTGCTA-AGTGACCAT-ATCC
1 GGGCTAAGTC-CGAAGGCATTTGTGCGAGA-T-ACTATAATCC
*
37871746 GGACTAAGATCCGAAGGCATTTGTGCGAGATACTA-AATCC
1 GGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTATAATCC
* *
37871786 GGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCGAAGGCATTTGTGCGAGATACTATAATCC
*
37871825 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGT-CCGAAGGCATTTG
37871848 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 8, Indels: 12
0.81 0.07 0.11
Matches are distributed among these distances:
39 33 0.38
40 43 0.49
41 11 0.12
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCGAAGGCATTTGTGCGAGATACTATAATCC
Found at i:37871805 original size:39 final size:41
Alignment explanation
Indices: 37871742--37871847 Score: 146
Period size: 39 Copynumber: 2.7 Consensus size: 41
37871732 AAGTGACCAT
* *
37871742 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA-A
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATACTATA
*
37871782 ATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATACTATA
* *
37871822 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGCTAAGACCCGAAGGCATTTG
37871848 AACGAGTAGC
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
39 33 0.55
40 27 0.45
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (41 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATACTATA
Found at i:37872201 original size:47 final size:47
Alignment explanation
Indices: 37872071--37872428 Score: 617
Period size: 47 Copynumber: 7.6 Consensus size: 47
37872061 AAGGGTTGGT
37872071 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37872118 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
37872167 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37872214 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37872261 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
37872308 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGTTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
37872355 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37872402 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
37872429 TCCCGAAGGG
Statistics
Matches: 297, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 250 0.84
49 47 0.16
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:37872603 original size:37 final size:37
Alignment explanation
Indices: 37872547--37872625 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
37872537 TCGAGCTCTA
* *
37872547 AAGACCCGATGACTACGTGT-GAGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGA-GATTATGTCCGGGT
*
37872584 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37872621 AAGAC
1 AAGAC
37872626 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37873896 original size:40 final size:40
Alignment explanation
Indices: 37873841--37874152 Score: 516
Period size: 40 Copynumber: 7.8 Consensus size: 40
37873831 GAGAATTGAG
37873841 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
37873881 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
37873921 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
37873961 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
37874001 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
37874041 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
37874081 AGTGATGTATCTGGGCTAAGTTCTGAAGATCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
37874121 AGTGATATATCCGTGCTAAACCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
37874153 ATCATGCTGG
Statistics
Matches: 253, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 253 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:37878274 original size:39 final size:40
Alignment explanation
Indices: 37878175--37878316 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
37878165 AATGATGTCT
* * *
37878175 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAATCC
*
37878215 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAATCC
* *
37878255 GGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AATCC
*
37878294 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
37878317 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 8, Indels: 12
0.81 0.07 0.11
Matches are distributed among these distances:
39 32 0.36
40 45 0.51
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCC
Found at i:37878334 original size:79 final size:80
Alignment explanation
Indices: 37878175--37878335 Score: 186
Period size: 79 Copynumber: 2.0 Consensus size: 80
37878165 AATGATGTCT
* **
37878175 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
37878240 CGAGATACTAAATCC
66 CGAGATACTAAATCC
* * * * *
37878255 GGGCTAAG-CCCGAAGGCATTTGTG-TGAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTG
*
37878317 AACGAG-TAGCTATATCC
64 AACGAGATA-CTAAATCC
37878334 GG
1 GG
37878336 TTAAATTTCG
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.04
79 52 0.75
80 14 0.20
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
CGAGATACTAAATCC
Found at i:37878670 original size:47 final size:47
Alignment explanation
Indices: 37878540--37878850 Score: 514
Period size: 47 Copynumber: 6.6 Consensus size: 47
37878530 AAGGGTTGGT
37878540 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37878587 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
37878636 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
37878683 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37878730 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGTTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
37878777 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
37878824 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
37878851 TCCCGAAGGG
Statistics
Matches: 248, Mismatches: 14, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 201 0.81
49 47 0.19
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:37879025 original size:37 final size:37
Alignment explanation
Indices: 37878969--37879047 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
37878959 CCGAGCTCTA
* * *
37878969 AAGACCCGATGACTACGTGTGGGGATTTTGTCC-GGAT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGG-T
*
37879006 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
37879043 AAGAC
1 AAGAC
37879048 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:37882397 original size:39 final size:40
Alignment explanation
Indices: 37882292--37882499 Score: 251
Period size: 40 Copynumber: 5.2 Consensus size: 40
37882282 TATTCGAATG
* * *
37882292 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
37882333 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
37882373 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
37882412 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * * **
37882452 ATAACCGGGCTATGTCCCGAAGACATTTGAGCGAGTGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
37882492 ATATCCGG
1 ATATCCGG
37882500 TTAAATTCCG
Statistics
Matches: 145, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
39 35 0.24
40 81 0.56
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:37882432 original size:79 final size:79
Alignment explanation
Indices: 37882292--37882513 Score: 261
Period size: 79 Copynumber: 2.8 Consensus size: 79
37882282 TATTCGAATG
* * **
37882292 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTATATCCGGGTTAAG-TCCGAAGGC
37882357 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * *
37882373 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGTTAAGT-CCGAAGGC
37882436 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * * * *
37882452 ATAACCGGGCTATGTCCCGAAGACATTTGAGCGAGTGGCTATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGTT-AAGTCCGAAGG
37882514 TATGTGATTC
Statistics
Matches: 120, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
78 1 0.01
79 62 0.52
80 45 0.38
81 12 0.10
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGTTAAGTCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:37896597 original size:32 final size:33
Alignment explanation
Indices: 37896544--37896666 Score: 230
Period size: 33 Copynumber: 3.8 Consensus size: 33
37896534 CTCTGTTTCA
37896544 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
37896577 GGTTGCTGGAC-GGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
37896609 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
37896642 GGTTGCTGGACAGTAGCTGGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGT
37896667 CAAGAAGAAA
Statistics
Matches: 88, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
32 32 0.36
33 56 0.64
ACGTcount: A:0.18, C:0.10, G:0.42, T:0.30
Consensus pattern (33 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
Found at i:37896648 original size:65 final size:66
Alignment explanation
Indices: 37896544--37896666 Score: 230
Period size: 65 Copynumber: 1.9 Consensus size: 66
37896534 CTCTGTTTCA
37896544 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTTGGTTGCTGGAC-GGAGCTGGAATGTGAGTGTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTTGGTTGCTGGACAGGAGCTGGAATGTGAGTGTT
37896608 T
66 T
*
37896609 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTTGGTTGCTGGACAGTAGCTGGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
37896667 CAAGAAGAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
65 44 0.79
66 12 0.21
ACGTcount: A:0.18, C:0.10, G:0.42, T:0.30
Consensus pattern (66 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTTGGTTGCTGGACAGGAGCTGGAATGTGAGTGTT
T
Found at i:37904053 original size:20 final size:20
Alignment explanation
Indices: 37904030--37904068 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37904020 TTATGTTTTA
* *
37904030 TTTTAACTTTTTATAACAAT
1 TTTTAACTTATAATAACAAT
*
37904050 TTTTCACTTATAATAACAA
1 TTTTAACTTATAATAACAA
37904069 CATTCATAGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTTAACTTATAATAACAAT
Found at i:37930491 original size:47 final size:45
Alignment explanation
Indices: 37930437--37930751 Score: 206
Period size: 47 Copynumber: 6.8 Consensus size: 45
37930427 TTTCTTGTGT
37930437 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGACA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGA-A
* * * *
37930484 GCCAGTGTAAGACGTGTCTGGGACATGCATCGG-CTAAGAGTTG-T
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAA
* * * * * *
37930528 GCTAGTGTAAGACATTTCTGTGACATACATTGGCCTCAATGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGA-A
* * * * *
37930575 GCCAGTGTAAGACGTGTCTGGGACATGCATTGG-CTAAGAGTTG-T
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAA
** * * ** *
37930619 GATAGTGTAAGACATATCTGGGACATGCATCAGCACGTATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-C-TCGAGATGA-A
** * *
37930667 GCTTGTATAAGACCATGTCTGGGACATGGCGTCGGCCTCGATGATGATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GATGA-A
* * *
37930716 GCCAGCGTAAAACCATGTTTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
37930752 AACTTATCCC
Statistics
Matches: 204, Mismatches: 50, Indels: 26
0.73 0.18 0.09
Matches are distributed among these distances:
44 55 0.27
45 5 0.02
46 15 0.07
47 64 0.31
48 11 0.05
49 48 0.24
50 6 0.03
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAA
Found at i:37930553 original size:44 final size:45
Alignment explanation
Indices: 37930434--37930649 Score: 208
Period size: 47 Copynumber: 4.8 Consensus size: 45
37930424 AGATTTCTTG
* *
37930434 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGACGA
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAAGA-GT
* *
37930479 TGACAGCCAGTGTAAGACGTGTCTGGGACATGCATCGG-CTAAGAGT
1 TG--TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAAGAGT
* * * * *
37930525 TGTGCTAGTGTAAGACATTTCTGTGACATACATTGGCCTCAATGA--
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-AA-GAGT
* *
37930570 TGATAGCCAGTGTAAGACGTGTCTGGGACATGCATTGG-CTAAGAGT
1 TG-T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAAGAGT
** *
37930616 TGTGATAGTGTAAGACATATCTGGGACATGCATC
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATC
37930650 AGCACGTATA
Statistics
Matches: 140, Mismatches: 21, Indels: 21
0.77 0.12 0.12
Matches are distributed among these distances:
44 55 0.39
45 9 0.06
46 12 0.09
47 64 0.46
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (45 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAAGAGT
Found at i:37930589 original size:91 final size:91
Alignment explanation
Indices: 37930434--37930649 Score: 324
Period size: 91 Copynumber: 2.4 Consensus size: 91
37930424 AGATTTCTTG
* * * *
37930434 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGACAGCCAGTGTAAGACGT
1 TGTGCTAGTGTAAGACATATCTGGGACATACATCGGCCTCAACGATGACAGCCAGTGTAAGACGT
37930499 GTCTGGGACATGCATCGGCTAAGAGT
66 GTCTGGGACATGCATCGGCTAAGAGT
* * * * *
37930525 TGTGCTAGTGTAAGACATTTCTGTGACATACATTGGCCTCAATGATGATAGCCAGTGTAAGACGT
1 TGTGCTAGTGTAAGACATATCTGGGACATACATCGGCCTCAACGATGACAGCCAGTGTAAGACGT
*
37930590 GTCTGGGACATGCATTGGCTAAGAGT
66 GTCTGGGACATGCATCGGCTAAGAGT
* *
37930616 TGTGATAGTGTAAGACATATCTGGGACATGCATC
1 TGTGCTAGTGTAAGACATATCTGGGACATACATC
37930650 AGCACGTATA
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
91 111 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (91 bp):
TGTGCTAGTGTAAGACATATCTGGGACATACATCGGCCTCAACGATGACAGCCAGTGTAAGACGT
GTCTGGGACATGCATCGGCTAAGAGT
Found at i:37930871 original size:12 final size:12
Alignment explanation
Indices: 37930851--37930880 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
37930841 AGTATAATAT
*
37930851 TGAGAATGAGAA
1 TGAGCATGAGAA
37930863 TGAGCATGAGAA
1 TGAGCATGAGAA
37930875 TGAGCA
1 TGAGCA
37930881 CAAAATAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.07, G:0.33, T:0.17
Consensus pattern (12 bp):
TGAGCATGAGAA
Found at i:37934171 original size:30 final size:30
Alignment explanation
Indices: 37934109--37934171 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
37934099 TAAGTTTCAT
* *
37934109 TTTATGGAAAAGTTATGGACGAAATTGGAA
1 TTTATGGAAAAGTTAGGGACGAAAATGGAA
*
37934139 TTTATGGAAAAGTTAGGGGC-AAAATGGTAA
1 TTTATGGAAAAGTTAGGGACGAAAATGG-AA
37934169 TTT
1 TTT
37934172 TGCCTAGGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 6 0.21
30 23 0.79
ACGTcount: A:0.38, C:0.03, G:0.27, T:0.32
Consensus pattern (30 bp):
TTTATGGAAAAGTTAGGGACGAAAATGGAA
Found at i:37947304 original size:11 final size:11
Alignment explanation
Indices: 37947288--37947332 Score: 60
Period size: 11 Copynumber: 4.4 Consensus size: 11
37947278 CTCCGCTTTT
37947288 TTTAATAATTA
1 TTTAATAATTA
*
37947299 TTTAATAA-CA
1 TTTAATAATTA
37947309 TTT-ATAATTA
1 TTTAATAATTA
37947319 TTTAATAATT-
1 TTTAATAATTA
37947329 TTTA
1 TTTA
37947333 GTATTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
9 4 0.13
10 12 0.40
11 14 0.47
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (11 bp):
TTTAATAATTA
Found at i:37947332 original size:20 final size:19
Alignment explanation
Indices: 37947286--37947405 Score: 67
Period size: 20 Copynumber: 6.4 Consensus size: 19
37947276 TGCTCCGCTT
37947286 TTTTTAATAATTATTTAATAA
1 TTTTT-ATAATTATTTAAT-A
**
37947307 CATTTATAATTATTTAATAA
1 TTTTTATAATTATTTAAT-A
37947327 TTTTTAGT-ATT-TTT-AT-
1 TTTTTA-TAATTATTTAATA
* *
37947343 TTTTTATATTTA-ATAATAA
1 TTTTTATAATTATTTAAT-A
*
37947362 TTATTATAA-TATATTAATA
1 TTTTTATAATTAT-TTAATA
*
37947381 TTATTTACAA-T-TTTAATA
1 TT-TTTATAATTATTTAATA
37947399 TTTTTAT
1 TTTTTAT
37947406 TTGGTTAACA
Statistics
Matches: 78, Mismatches: 12, Indels: 22
0.70 0.11 0.20
Matches are distributed among these distances:
15 1 0.01
16 9 0.12
17 6 0.08
18 12 0.15
19 14 0.18
20 32 0.41
21 4 0.05
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (19 bp):
TTTTTATAATTATTTAATA
Found at i:37947356 original size:63 final size:63
Alignment explanation
Indices: 37947288--37947407 Score: 147
Period size: 63 Copynumber: 1.9 Consensus size: 63
37947278 CTCCGCTTTT
* * *
37947288 TTTAATAATTATT-TAATAACAT-TT-ATAATTATTTAATAATTTTTAGTATTTTTATTTTTTAT
1 TTTAATAATAATTATAATAACATATTAAT-ATTATTT-ACAA-TTTTAATATTTTTATTTTTTAT
37947350 A
63 A
* *
37947351 TTTAATAATAATTATTATAATATATTAATATTATTTACAATTTTAATATTTTTATTT
1 TTTAATAATAATTATAATAACATATTAATATTATTTACAATTTTAATATTTTTATTT
37947408 GGTTAACAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
63 28 0.57
64 10 0.20
65 9 0.18
66 2 0.04
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (63 bp):
TTTAATAATAATTATAATAACATATTAATATTATTTACAATTTTAATATTTTTATTTTTTATA
Found at i:37953171 original size:20 final size:21
Alignment explanation
Indices: 37953136--37953192 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
37953126 TGATATGTGG
37953136 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
37953154 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
37953175 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
37953193 GTAATCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:37953271 original size:26 final size:26
Alignment explanation
Indices: 37953242--37953329 Score: 158
Period size: 26 Copynumber: 3.4 Consensus size: 26
37953232 GAGGAAGTGC
37953242 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
37953268 AAAAGGGCTTATACCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
37953294 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
37953320 AAAAGGGCTT
1 AAAAGGGCTT
37953330 TTCCCAGTAA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 59 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:37961056 original size:26 final size:26
Alignment explanation
Indices: 37961010--37961133 Score: 205
Period size: 26 Copynumber: 4.8 Consensus size: 26
37961000 CCTCTTTAAT
*
37961010 AACTGGGGCA-AAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
37961035 AACTGGGGCATAAGCCATTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
37961061 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
37961087 AACTTGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
37961113 AACTGGGGCATAAGCGCTTTT
1 AACTGGGGCATAAGCCCTTTT
37961134 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 10 0.11
26 82 0.89
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:37961208 original size:20 final size:20
Alignment explanation
Indices: 37961183--37961257 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
37961173 TTATGATTAC
* *
37961183 ATCATGTGGATTTCATACAT
1 ATCATGTGCATATCATACAT
37961203 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
37961223 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
37961243 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
37961258 TCCCACATAT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
18 8 0.15
20 42 0.81
21 2 0.04
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:37961214 original size:11 final size:11
Alignment explanation
Indices: 37961200--37961238 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
37961190 GGATTTCATA
37961200 CATATCATGTG
1 CATATCATGTG
*
37961211 CATATCA--TA
1 CATATCATGTG
37961220 CATATCATGTG
1 CATATCATGTG
37961231 CATATCAT
1 CATATCAT
37961239 ATCAATCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (11 bp):
CATATCATGTG
Found at i:37961255 original size:9 final size:10
Alignment explanation
Indices: 37961200--37961256 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
37961190 GGATTTCATA
37961200 CATATCATGT
1 CATATCATGT
*
37961210 GCATATCAT-A
1 -CATATCATGT
37961220 CATATCATGT
1 CATATCATGT
*
37961230 GCATATCATAT
1 -CATATCATGT
37961241 CA-ATCATGT
1 CATATCATGT
37961250 -ATATCAT
1 CATATCAT
37961257 ATCCCACATA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:37971305 original size:28 final size:28
Alignment explanation
Indices: 37971259--37971336 Score: 129
Period size: 28 Copynumber: 2.8 Consensus size: 28
37971249 TCAAATATGG
*
37971259 CACTTAGTGTATGAAATATTGAGAATGA
1 CACTTAGTGTGTGAAATATTGAGAATGA
*
37971287 CACTTAGTGTGTGAGATATTGAGAATGA
1 CACTTAGTGTGTGAAATATTGAGAATGA
*
37971315 CACTTACTGTGTGAAATATTGA
1 CACTTAGTGTGTGAAATATTGA
37971337 ATGATTCAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.35, C:0.09, G:0.23, T:0.33
Consensus pattern (28 bp):
CACTTAGTGTGTGAAATATTGAGAATGA
Found at i:37973727 original size:28 final size:24
Alignment explanation
Indices: 37973702--37973752 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
37973692 CTATATAAAG
37973702 TTGATAATAATTAATATATATTATAA
1 TTGAT-ATAATT-ATATATATTATAA
*
37973728 TTGATATAATTATATAT-TAATAA
1 TTGATATAATTATATATATTATAA
37973751 TT
1 TT
37973753 ATACTATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 7 0.29
24 6 0.25
25 6 0.25
26 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (24 bp):
TTGATATAATTATATATATTATAA
Found at i:37973729 original size:16 final size:15
Alignment explanation
Indices: 37973708--37973749 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
37973698 AAAGTTGATA
37973708 ATAATTAATATATATT
1 ATAATTAATATA-ATT
*
37973724 ATAATTGATATAATT
1 ATAATTAATATAATT
37973739 ATATATTAATA
1 ATA-ATTAATA
37973750 ATTATACTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
ATAATTAATATAATT
Found at i:37984519 original size:13 final size:13
Alignment explanation
Indices: 37984501--37984534 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
37984491 AATTCCATAT
37984501 TTTTCTCCCTTAG
1 TTTTCTCCCTTAG
37984514 TTTTCTCCCTTAG
1 TTTTCTCCCTTAG
37984527 TTTTCTCC
1 TTTTCTCC
37984535 TAAAATCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.06, C:0.32, G:0.06, T:0.56
Consensus pattern (13 bp):
TTTTCTCCCTTAG
Found at i:37985199 original size:95 final size:95
Alignment explanation
Indices: 37985075--37985353 Score: 443
Period size: 95 Copynumber: 2.9 Consensus size: 95
37985065 AGGAGCTGTG
37985075 AATC-AGACATTAACCATTACACAATGCTACTCATACGAGCTGTGAAGAATCCACAACACATGCA
1 AATCGAGACATTAACCATTACACAATGCTACTCATACGAGCTGTGAAGAATCCACAACACATGCA
37985139 GAATCTTAGCCATCGGTAAGGTATCTAGTA
66 GAATCTTAGCCATCGGTAAGGTATCTAGTA
37985169 AATCGAGACATTAACCATTACACAATGCTACTCATACGAGCTGTGAAGAATCCACAACACATGCA
1 AATCGAGACATTAACCATTACACAATGCTACTCATACGAGCTGTGAAGAATCCACAACACATGCA
37985234 GAATCTTAGCCATCGGTAAGGTATCTAGTA
66 GAATCTTAGCCATCGGTAAGGTATCTAGTA
* ** * * * * ** * *
37985264 AATCGAGACATTAACCATTAGATGATGCTACTCATATGAACTATGAAGAATCCGCATTATATGTA
1 AATCGAGACATTAACCATTACACAATGCTACTCATACGAGCTGTGAAGAATCCACAACACATGCA
*
37985329 GAATCTTAGCCATCAGTAAGGTATC
66 GAATCTTAGCCATCGGTAAGGTATC
37985354 CATTATCGAA
Statistics
Matches: 172, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
94 4 0.02
95 168 0.98
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (95 bp):
AATCGAGACATTAACCATTACACAATGCTACTCATACGAGCTGTGAAGAATCCACAACACATGCA
GAATCTTAGCCATCGGTAAGGTATCTAGTA
Found at i:37985568 original size:37 final size:37
Alignment explanation
Indices: 37985517--37985587 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
37985507 ATTTTTTTAA
37985517 CATTTTCGTACACATATCAAATAACCATATACTTATT
1 CATTTTCGTACACATATCAAATAACCATATACTTATT
37985554 CATTTTCGCT-CACATATCAAATAACCATATACTT
1 CATTTTCG-TACACATATCAAATAACCATATACTT
37985588 GTAATTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
37 32 0.97
38 1 0.03
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.37
Consensus pattern (37 bp):
CATTTTCGTACACATATCAAATAACCATATACTTATT
Found at i:37986147 original size:25 final size:25
Alignment explanation
Indices: 37986119--37986170 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
37986109 AAATATTTAC
* *
37986119 ACTTGGGTCCCTATATTCAAAACTA
1 ACTTGAGTCCCTATATCCAAAACTA
*
37986144 ACTTTAGTCCCTATATCCAAAACTA
1 ACTTGAGTCCCTATATCCAAAACTA
37986169 AC
1 AC
37986171 AATTTTCACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.31
Consensus pattern (25 bp):
ACTTGAGTCCCTATATCCAAAACTA
Found at i:37986890 original size:23 final size:23
Alignment explanation
Indices: 37986859--37986905 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
37986849 AACATTTAAC
*
37986859 ATCATAATATTTAAAATAAATTT
1 ATCAAAATATTTAAAATAAATTT
37986882 ATCAAAATATTTAAAATAAATTT
1 ATCAAAATATTTAAAATAAATTT
37986905 A
1 A
37986906 ACTCATTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (23 bp):
ATCAAAATATTTAAAATAAATTT
Found at i:37987729 original size:28 final size:28
Alignment explanation
Indices: 37987698--37987754 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
37987688 CTATCACAGA
*
37987698 AACAGTATTAGGTAGGCCTTAGCCCAAT
1 AACAGTATTAGGTAGGCCTAAGCCCAAT
*
37987726 AACAGTATTAGGTGGGCCTAAGCCCAAT
1 AACAGTATTAGGTAGGCCTAAGCCCAAT
37987754 A
1 A
37987755 CAGAACCAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (28 bp):
AACAGTATTAGGTAGGCCTAAGCCCAAT
Found at i:37988210 original size:27 final size:27
Alignment explanation
Indices: 37988180--37988256 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
37988170 GGCATAATTT
* *
37988180 TCATTCTACCATACAGGGGTATTATGG
1 TCATTTTACCATACAAGGGTATTATGG
* * *
37988207 TCATTTTACCCTATAAGGGCATTATGG
1 TCATTTTACCATACAAGGGTATTATGG
*
37988234 TTATTTTA-CACTACAAGGGTATT
1 TCATTTTACCA-TACAAGGGTATT
37988257 TCGATAATTT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
26 1 0.03
27 39 0.98
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTATGG
Found at i:38003130 original size:30 final size:29
Alignment explanation
Indices: 38003094--38003251 Score: 192
Period size: 30 Copynumber: 5.3 Consensus size: 29
38003084 AAGAAACATT
* * *
38003094 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
38003124 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
38003154 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
*
38003184 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
* *
38003214 ATCAGTATTAGTAACAGAATCAGAATTAGA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
38003244 ATCAGAAT
1 ATCAGAAT
38003252 CAGAATTACG
Statistics
Matches: 112, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
29 1 0.01
30 107 0.96
31 4 0.04
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:38003186 original size:60 final size:60
Alignment explanation
Indices: 38003115--38003254 Score: 262
Period size: 60 Copynumber: 2.3 Consensus size: 60
38003105 AACCAAAATG
38003115 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATC
*
38003175 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATC
*
38003235 AGAATTAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAG
38003255 AATTACGTGA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
60 78 1.00
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.20
Consensus pattern (60 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATC
Found at i:38003275 original size:6 final size:6
Alignment explanation
Indices: 38003115--38003257 Score: 170
Period size: 6 Copynumber: 23.8 Consensus size: 6
38003105 AACCAAAATG
*
38003115 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
38003163 AGTAA-C AGAATC AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
* * *
38003211 AGAATC AGTATT AGTAA-C AGAATC AGAATT AGAATC AGAATC AGAAT
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT
38003258 TACGTGACAG
Statistics
Matches: 119, Mismatches: 8, Indels: 20
0.81 0.05 0.14
Matches are distributed among these distances:
5 9 0.08
6 103 0.87
7 6 0.05
8 1 0.01
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:38003452 original size:27 final size:26
Alignment explanation
Indices: 38003414--38003500 Score: 120
Period size: 27 Copynumber: 3.2 Consensus size: 26
38003404 GCTCAGTTAT
*
38003414 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGACAGAGCCACCAGA-A
38003441 CAGATATTGTGACAGAGCCACCAGAA
1 CAGATATTGTGACAGAGCCACCAGAA
* *
38003467 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGACAGAGCCACCAG-AA
38003495 CAGATA
1 CAGATA
38003501 ATATGGCAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 7 0.13
27 40 0.73
28 8 0.15
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACAGAGCCACCAGAA
Found at i:38003507 original size:27 final size:27
Alignment explanation
Indices: 38003414--38003515 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
38003404 GCTCAGTTAT
* * * *
38003414 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGAAA
* *
38003441 CAGATATTGTGACAGAGCCACCAG-AA
1 CAGATATTGTGGCAAAGCCACCAGAAA
*
38003467 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAAAGCCACCAGAAA
* *
38003495 CAGATAATATGGCAAAGCCAC
1 CAGATATTGTGGCAAAGCCAC
38003516 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGAAA
Found at i:38003514 original size:54 final size:53
Alignment explanation
Indices: 38003414--38003515 Score: 123
Period size: 54 Copynumber: 1.9 Consensus size: 53
38003404 GCTCAGTTAT
* * * * *
38003414 CAGATATTGTGACAGAGTCACCAGATACAGATATTGTGACAGAGCCACCAGAA
1 CAGATATTGTGACAGAGCCACCAGAAACAGATAATATGACAAAGCCACCAGAA
* * *
38003467 CAGATATTTGTGGCATAGCCACCAGAAACAGATAATATGGCAAAGCCAC
1 CAGATA-TTGTGACAGAGCCACCAGAAACAGATAATATGACAAAGCCAC
38003516 TTAACAGAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 6 0.15
54 34 0.85
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.19
Consensus pattern (53 bp):
CAGATATTGTGACAGAGCCACCAGAAACAGATAATATGACAAAGCCACCAGAA
Found at i:38003701 original size:22 final size:22
Alignment explanation
Indices: 38003673--38003737 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
38003663 GCAAATACGT
*
38003673 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
38003695 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
38003717 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
38003738 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:38005545 original size:40 final size:39
Alignment explanation
Indices: 38005501--38005611 Score: 109
Period size: 39 Copynumber: 2.8 Consensus size: 39
38005491 AGTGAATATA
*
38005501 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACAAGT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACAAGT
** * *
38005541 TCCGGGTTAAGCCCGAAGGCCTTTGTGCGAGATACTAA-A
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATAC-AAGT
* *
38005580 TCCGG-GTAAAGTCCCGAAGGCATTCGTGCGAG
1 TCCGGACT-AAG-CCCGAAGGCATTTGTGCGAG
38005612 TTATTAAATC
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.02
39 30 0.50
40 29 0.48
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.22
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACAAGT
Found at i:38005566 original size:39 final size:39
Alignment explanation
Indices: 38005514--38005684 Score: 193
Period size: 39 Copynumber: 4.3 Consensus size: 39
38005504 GGACTAAGAT
*
38005514 CCGAAGGCATTTGTGCGAGATACAAGTTCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACAA-ATCCGGGTTAAGTC
* *
38005553 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTAAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
* * *
38005593 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
38005633 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
38005672 CCGAAGGCATTTG
1 CCGAAGGCATTTG
38005685 AACGAGGAGC
Statistics
Matches: 113, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
39 64 0.57
40 49 0.43
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:38005597 original size:79 final size:79
Alignment explanation
Indices: 38005461--38005684 Score: 215
Period size: 79 Copynumber: 2.8 Consensus size: 79
38005451 TTGAATGCTG
* * * * * * *
38005461 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAAACCGGGCTAAG-TCCCGAAGGCAT
*
38005524 TTGTGCGAGATA-CAAGT
63 TTGTGCGAGATATCAA-A
* *
38005541 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGG-TAAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAAACCGGGCT-AAGTCCCGAAGGCATT
* * *
38005604 CGTGCGAGTTATTAAA
64 TGTGCGAGATATCAAA
* * *
38005620 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
38005685 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
78 2 0.02
79 88 0.72
80 31 0.25
81 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATCAAA
Found at i:38005620 original size:40 final size:40
Alignment explanation
Indices: 38005461--38005684 Score: 217
Period size: 40 Copynumber: 5.7 Consensus size: 40
38005451 TTGAATGCTG
* * * *
38005461 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
** *
38005501 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAA-A
*
38005541 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * * *
38005580 TCCGGGTAAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
38005620 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
38005659 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
38005685 AACGAGGAGC
Statistics
Matches: 155, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
39 66 0.43
40 78 0.50
41 10 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:38005702 original size:79 final size:80
Alignment explanation
Indices: 38005541--38005717 Score: 193
Period size: 79 Copynumber: 2.2 Consensus size: 80
38005531 AGATACAAGT
* *
38005541 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTAAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGTAAAGTCCCGAAGGCATTC
** * *
38005605 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * *
38005620 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCT-ATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGG-TAAAGTCCCGAAGGCATT
* *
38005683 TGAACGAG-GAGCTATA
65 CGAACGAGTGA-CTAAA
*
38005699 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
38005718 TACGTGATTT
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
78 16 0.19
79 58 0.70
80 9 0.11
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGTAAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:38013442 original size:40 final size:40
Alignment explanation
Indices: 38013295--38013517 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
38013285 TTGAATGCTG
* * * *
38013295 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
** *
38013335 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
38013374 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
38013413 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
38013453 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
38013492 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
38013518 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 22 0.14
39 56 0.36
40 68 0.43
41 10 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:38013479 original size:79 final size:78
Alignment explanation
Indices: 38013295--38013515 Score: 241
Period size: 79 Copynumber: 2.8 Consensus size: 78
38013285 TTGAATGCTG
* * * * *
38013295 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGA-T-ACTAAATCCGGGCTAAG-TCCCGAAGGCAT
* *
38013358 TTGTGCGAGATACAAT
63 TCGTGCGAGATACAAA
*
38013374 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTC
* *
38013438 GTGCGAGTTATTAAA
65 GTGCGAGATA-CAAA
* * * * *
38013453 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATT
38013516 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 41 0.34
79 70 0.58
80 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACAAA
Found at i:38013535 original size:79 final size:80
Alignment explanation
Indices: 38013374--38013550 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
38013364 GAGATACAAT
* * *
38013374 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
38013438 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
38013453 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
38013517 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
38013532 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
38013551 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 16 0.19
79 59 0.71
80 8 0.10
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:38015127 original size:27 final size:27
Alignment explanation
Indices: 38015096--38015633 Score: 586
Period size: 27 Copynumber: 20.2 Consensus size: 27
38015086 AGGTATCTTG
* *
38015096 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
38015123 TTAATTCTACCTTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
38015150 GTAATTCTATCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
38015177 GTAATTCTACCCTACAGGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
38015203 GATAATTCTACCCTACAGGGATATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
38015231 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
38015258 GTAATTCTACCCTATAGGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
38015284 GATAATTCTACCCTATAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
38015312 GTAATTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
38015338 GATAATTCTACCCTACAGGGGTATTGC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
38015365 GATAATTCTACCCTACA-GGG-------
1 G-TAATTCTACCCTACAGGGGTATTTCA
38015385 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
38015411 GATAATTCTACCCTATAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
38015439 GTAATTCTACCCTACAAGGGTATTAC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
38015465 GATAATTCTACCCTACAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
38015493 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
38015520 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
38015547 GCT-ATTCTACCCTACAGGGGTAATTC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * * *
38015573 GATAATTTTAACCTACAGGGGTATTCCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
38015601 GTAATTCTACGCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
38015628 GTAATT
1 GTAATT
38015634 TTGTAAACCA
Statistics
Matches: 452, Mismatches: 40, Indels: 38
0.85 0.08 0.07
Matches are distributed among these distances:
19 15 0.03
20 4 0.01
26 10 0.02
27 417 0.92
28 6 0.01
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:38015155 original size:54 final size:54
Alignment explanation
Indices: 38015069--38015633 Score: 646
Period size: 54 Copynumber: 10.6 Consensus size: 54
38015059 AGGGCAAAAT
* * * * * *
38015069 GGTAATTTTACCCCACA-AGGTATCTTGGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
** * * * *
38015122 ATTAATTCTACCTTATAGGGGTATTTTAGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
** * *
38015176 GGTAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
* * * *
38015230 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
* * * *
38015284 GATAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
* ** *
38015338 GATAATTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACA--GG------
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
* * *
38015384 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
* ** *
38015438 GGTAATTCTACCCTACAAGGGTATTACGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
* *
38015492 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
* * * * * *
38015546 GGCT-ATTCTACCCTACAGGGGTAATTCGATAATTTTAACCTACAGGGGTATTCC
1 GG-TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
* *
38015600 GGTAATTCTACGCTACAGGGGTATTTCGGTAATT
1 GGTAATTCTACCCTACAGGGGTATTTTGGTAATT
38015634 TTGTAAACCA
Statistics
Matches: 447, Mismatches: 54, Indels: 21
0.86 0.10 0.04
Matches are distributed among these distances:
46 41 0.09
48 2 0.00
52 2 0.00
53 12 0.03
54 389 0.87
55 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
Found at i:38015189 original size:81 final size:81
Alignment explanation
Indices: 38015069--38015633 Score: 713
Period size: 81 Copynumber: 7.1 Consensus size: 81
38015059 AGGGCAAAAT
* * * * **
38015069 GGTAATTTTACCCCACA-AGGTATCTT-GGTAATTCCACCCTACAGGGGTATT-TTATTAATTCT
1 GGTAATTCTACCCTACAGGGGTAT-TTCGGTAATTCTACCCTACAGGGGTATTGCGA-TAATTCT
* * *
38015131 ACCTTATAGGGGTATTTT
64 ACCCTACAGGGGTATTTC
* *
38015149 AGTAATTCTATCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTAC
*
38015214 CCTACAGGGATATTTC
66 CCTACAGGGGTATTTC
* *
38015230 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGATAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTAC
*
38015295 CCTATAGGGGTATTTC
66 CCTACAGGGGTATTTC
* *
38015311 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTGCGATAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTAC
38015376 CCTACA--GG------
66 CCTACAGGGGTATTTC
* * * *
38015384 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTAC
* *
38015449 CCTACAAGGGTATTAC
66 CCTACAGGGGTATTTC
* * *
38015465 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTAC
*
38015530 CCTACAAGGGTATTTC
66 CCTACAGGGGTATTTC
* * * * * *
38015546 GGCT-ATTCTACCCTACAGGGGTAATTCGATAATTTTAACCTACAGGGGTATTCCGGTAATTCTA
1 GG-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTA
*
38015610 CGCTACAGGGGTATTTC
65 CCCTACAGGGGTATTTC
38015627 GGTAATT
1 GGTAATT
38015634 TTGTAAACCA
Statistics
Matches: 433, Mismatches: 39, Indels: 25
0.87 0.08 0.05
Matches are distributed among these distances:
73 67 0.15
75 2 0.00
79 2 0.00
80 16 0.04
81 344 0.79
82 2 0.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (81 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTAC
CCTACAGGGGTATTTC
Found at i:38015391 original size:19 final size:19
Alignment explanation
Indices: 38015367--38015406 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
38015357 GGTATTGCGA
38015367 TAATTCTACCCTACAGGGG
1 TAATTCTACCCTACAGGGG
38015386 TAATTCTACCCTACAGGGG
1 TAATTCTACCCTACAGGGG
38015405 TA
1 TA
38015407 TTTCGATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (19 bp):
TAATTCTACCCTACAGGGG
Found at i:38015658 original size:54 final size:52
Alignment explanation
Indices: 38015167--38015690 Score: 367
Period size: 54 Copynumber: 9.9 Consensus size: 52
38015157 TATCCTACAG
* * * *
38015167 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCT-ACCCTACA
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAAACC-A-A
* * *
38015220 GGGATATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCT-ACCCTATA
1 GGG-TATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAAACC-A-A
* * * * **
38015274 GGGGTATTGCGATAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAA
1 -GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAAAC--CAA
* * * * *
38015329 GGGTATTTCGATAATTCTACCCTACAGGGGTATTGCGATAATTCT-ACCCTACA
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAAACC-A-A
* * *
38015382 -GG------GGTAATTCTACCCTACAGGGGTATTTCGATAATTCT-ACCCTATA
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAAACC-A-A
* * * * *
38015428 GGGGTATTTCGGTAATTCTACCCTACAAGGGTATTACGATAATTCT-ACCCTACA
1 -GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAAACC-A-A
* **
38015482 GGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAA
1 -GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAAAC--CAA
* *
38015537 GGGTATTTCGGCT-ATTCTACCCTACAGGGGTAATTCGATAATTTT-AACCTACA
1 GGGTATTTCGG-TAATTCTACCCTACAGGGGTATTTCGGTAATTTTAAACC-A-A
* *
38015590 GGGGTATTCCGGTAATTCTACGCTACAGGGGTATTTCGGTAATTTTGTAAACCAA
1 -GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAA-TTT-TAAACCAA
* * * ** *
38015645 GGGCATTTTGGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTA
1 GGGTATTTCGGTAATTCTACCCTA-CAGGGGTATTTCGGTAATTTTA
38015691 TTGATCGAGG
Statistics
Matches: 405, Mismatches: 39, Indels: 55
0.81 0.08 0.11
Matches are distributed among these distances:
46 41 0.10
48 2 0.00
51 2 0.00
52 6 0.01
53 13 0.03
54 317 0.78
55 14 0.03
56 4 0.01
57 6 0.01
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (52 bp):
GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTAAACCAA
Found at i:38015673 original size:81 final size:81
Alignment explanation
Indices: 38015588--38015748 Score: 182
Period size: 81 Copynumber: 2.0 Consensus size: 81
38015578 TTTTAACCTA
* * *
38015588 CAGGGGTATTCCGGTAATTCTA-CGCTAC-AGGGGTATTTCGGTAATTTTGTAAACCAAGGGCAT
1 CAGGGGTATTCCGGTAATTCTATCGAT-CGA-GGGTATTTCAGTAATTTTGCAAACCAAGGGCAT
*
38015651 TTTGGTAATTTTACAAAC
64 TTCGGTAATTTTACAAAC
** * * * ** *
38015669 CAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTT
1 CAGGGGTATTCCGGTAATTCTATCGATCGAGGGTATTTCAGTAATTTTGCAAACCAAGGGCATTT
38015734 CGGTAATTTTACAAA
66 CGGTAATTTTACAAA
38015749 TCGAGGATAT
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
81 63 0.95
82 3 0.05
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (81 bp):
CAGGGGTATTCCGGTAATTCTATCGATCGAGGGTATTTCAGTAATTTTGCAAACCAAGGGCATTT
CGGTAATTTTACAAAC
Found at i:38016008 original size:27 final size:27
Alignment explanation
Indices: 38015825--38015997 Score: 249
Period size: 27 Copynumber: 6.4 Consensus size: 27
38015815 GTAATTTCAT
38015825 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
38015852 AA-CTAAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
** *
38015879 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
38015906 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
38015933 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * *
38015960 AATCGAGGGTGAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
38015987 AATCGAGGGTA
1 AATCGAGGGTA
38015998 CTTTGGTAAT
Statistics
Matches: 130, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 128 0.98
28 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:38016008 original size:81 final size:81
Alignment explanation
Indices: 38015825--38015997 Score: 285
Period size: 81 Copynumber: 2.1 Consensus size: 81
38015815 GTAATTTCAT
* * *
38015825 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTAAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
38015889 AAAACAGTAATTCTGTA
65 AAAACAGTAATTCTGTA
*
38015906 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
*
38015971 AAACGGTAATTCTGTA
66 AAACAGTAATTCTGTA
38015987 AATCGAGGGTA
1 AATCGAGGGTA
38015998 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
81 85 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:38016016 original size:27 final size:27
Alignment explanation
Indices: 38015618--38016021 Score: 225
Period size: 27 Copynumber: 15.1 Consensus size: 27
38015608 TACGCTACAG
* * *
38015618 GGGT-ATTTCGGTAATTTTGTAAACCAA
1 GGGTAATTT-GGTAATTTTATAAATCGA
* * * *
38015645 GGGCATTTTGGTAATTTTACAAA-CCA
1 GGGTAATTTGGTAATTTTATAAATCGA
* **
38015671 GGGGTATTTTGGTAATTTTATTGATCGA
1 -GGGTAATTTGGTAATTTTATAAATCGA
* * **
38015699 GGGTATTTTAGTAATTTTGCAAA-CTGA
1 GGGTAATTTGGTAATTTTATAAATC-GA
*
38015726 GGGT-ATTTCGGTAATTTTACAAATCGA
1 GGGTAATTT-GGTAATTTTATAAATCGA
* *
38015753 GGAT-ATTTGGGTAATTTTATAAACCGA
1 GGGTAATTT-GGTAATTTTATAAATCGA
* * * *
38015780 -GGTACTTTGGTAATTTTACAACT-GG
1 GGGTAATTTGGTAATTTTATAAATCGA
* * *
38015805 GGGTATTTTAGTAATTTCAT-AATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
** * *
38015831 GGGTAAAATGGTAATTTTGTAAA-CTAA
1 GGGTAATTTGGTAATTTTATAAATC-GA
** *
38015858 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
**** * *
38015885 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
** *
38015912 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
** *
38015939 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
** * *
38015966 GGGTGAA-ACGGTAATTCTGTAAATCGA
1 GGGT-AATTTGGTAATTTTATAAATCGA
* * *
38015993 GGGTACTTTGGTAATTTTACAAATTGA
1 GGGTAATTTGGTAATTTTATAAATCGA
38016020 GG
1 GG
38016022 ACATTTTAAT
Statistics
Matches: 304, Mismatches: 59, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
25 3 0.01
26 52 0.17
27 240 0.79
28 9 0.03
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (27 bp):
GGGTAATTTGGTAATTTTATAAATCGA
Found at i:38023434 original size:29 final size:29
Alignment explanation
Indices: 38023401--38023465 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
38023391 AATATGACTG
*
38023401 GGCCTAACAAGCCATATAAATGTGATTTA
1 GGCCTAACAAGCCATATAAAGGTGATTTA
*** * *
38023430 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACAAGCCATATAAAGGTGATTTA
38023459 GGCCTAA
1 GGCCTAA
38023466 TGGGCCATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (29 bp):
GGCCTAACAAGCCATATAAAGGTGATTTA
Found at i:38023466 original size:29 final size:29
Alignment explanation
Indices: 38023411--38023509 Score: 105
Period size: 29 Copynumber: 3.4 Consensus size: 29
38023401 GGCCTAACAA
* * *
38023411 GCCATATAAATGTGATTTAGGCCTAATGG
1 GCCATATACAGGTGATTTGGGCCTAATGG
38023440 GCCATATACAGGTGATTTGGGCCTAATGG
1 GCCATATACAGGTGATTTGGGCCTAATGG
*
38023469 GCCATATGAACA--TGA-TTGGGCTTAATGG
1 GCCATAT--ACAGGTGATTTGGGCCTAATGG
* *
38023497 GCCAGATATAGGT
1 GCCATATACAGGT
38023510 ATGTGAAATT
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
26 2 0.03
28 19 0.32
29 36 0.60
31 3 0.05
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
GCCATATACAGGTGATTTGGGCCTAATGG
Found at i:38027228 original size:27 final size:27
Alignment explanation
Indices: 38027198--38027257 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
38027188 CGCTGCCAAA
*
38027198 AACAGTAAATGTGGCAAAGCCACCAGT
1 AACAGTAAATGTGACAAAGCCACCAGT
* * *
38027225 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGTAAATGTGACAAAGCCACCAGT
38027252 AA-AGTA
1 AACAGTA
38027258 CTTCCTCCAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.18
Consensus pattern (27 bp):
AACAGTAAATGTGACAAAGCCACCAGT
Found at i:38027424 original size:27 final size:26
Alignment explanation
Indices: 38027394--38027564 Score: 180
Period size: 27 Copynumber: 6.4 Consensus size: 26
38027384 GGCATAATCT
* *
38027394 TCATTTTACCATACAGGGATATTACGG
1 TCATTTTACCCTACAGGG-CATTACGG
** *
38027421 TCATTTTATTCTACAGGGCATTACGA
1 TCATTTTACCCTACAGGGCATTACGG
* *
38027447 TCATTTTACCCTACAGGGGTATTATGG
1 TCATTTTACCCTACA-GGGCATTACGG
*
38027474 TCATTTTACCCTACAAGGGCATTACAG
1 TCATTTTACCCTAC-AGGGCATTACGG
* *
38027501 TCATTTTACCCTATAGGGGCATTACGA
1 TCATTTTACCCTACA-GGGCATTACGG
* * *
38027528 TCATTATACCCTTCTAGGGCATTACAG
1 TCATTTTACCCTAC-AGGGCATTACGG
38027555 TCATTTTACC
1 TCATTTTACC
38027565 TATTTTGGGG
Statistics
Matches: 118, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 20 0.17
27 96 0.81
28 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGCATTACGG
Found at i:38027519 original size:54 final size:53
Alignment explanation
Indices: 38027394--38027564 Score: 218
Period size: 54 Copynumber: 3.2 Consensus size: 53
38027384 GGCATAATCT
* * **
38027394 TCATTTTACCATACAGGGATATTACGGTCATTTTATTCTACAGGGCATTAC-G
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGCATTACAG
*
38027446 ATCATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTACAAGGGCATTACAG
1 -TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTAC-AGGGCATTACAG
* * * * *
38027501 TCATTTTACCCTATAGGGGCATTACGATCATTATACCCTTCTAGGGCATTACAG
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTAC-AGGGCATTACAG
38027555 TCATTTTACC
1 TCATTTTACC
38027565 TATTTTGGGG
Statistics
Matches: 104, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
53 36 0.35
54 67 0.64
55 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (53 bp):
TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGCATTACAG
Found at i:38027558 original size:81 final size:80
Alignment explanation
Indices: 38027394--38027564 Score: 202
Period size: 81 Copynumber: 2.1 Consensus size: 80
38027384 GGCATAATCT
* * ** *
38027394 TCATTTTACCATACAGGGATATTACGGTCATTTTATTCTACAGGGCATTACGATCATTTTACCCT
1 TCATTTTACCATACAGGGACATTACAGTCATTTTACCCTACAGGGCATTACGATCATTATACCCT
* **
38027459 ACAGGGGTATTATGG
66 ACAGGGGCATTACAG
* *
38027474 TCATTTTACCCTACAAGGG-CATTACAGTCATTTTACCCTATAGGGGCATTACGATCATTATACC
1 TCATTTTACCATAC-AGGGACATTACAGTCATTTTACCCTACA-GGGCATTACGATCATTATACC
*
38027538 CTTCTA-GGGCATTACAG
64 CTAC-AGGGGCATTACAG
38027555 TCATTTTACC
1 TCATTTTACC
38027565 TATTTTGGGG
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
80 31 0.40
81 45 0.58
82 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (80 bp):
TCATTTTACCATACAGGGACATTACAGTCATTTTACCCTACAGGGCATTACGATCATTATACCCT
ACAGGGGCATTACAG
Found at i:38031129 original size:50 final size:50
Alignment explanation
Indices: 38031054--38031280 Score: 219
Period size: 50 Copynumber: 4.5 Consensus size: 50
38031044 ATGAATACAT
* * * *
38031054 ATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCATACTATTAAGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCAC
* * ** **
38031104 ATGTGTAGAACTAAGTGCAGGCTACTATGCATACTCAATGACT-TCGA-TCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGTCAC
* * * * *
38031155 TTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGTCAC
* * * *
38031205 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTT-GGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCAC
38031254 ATGTGTAGTACTAAGTGCAGGCTACTA
1 ATGTGTAGTACTAAGTGCAGGCTACTA
38031281 TGCGTATCAA
Statistics
Matches: 147, Mismatches: 23, Indels: 15
0.79 0.12 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 34 0.23
50 72 0.49
51 32 0.22
52 3 0.02
53 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCAC
Found at i:38031410 original size:27 final size:26
Alignment explanation
Indices: 38031380--38031431 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
38031370 GGGAAAATCG
38031380 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGTGG--ATATGTGCAAAGTTATT
* *
38031407 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
38031432 ATTTACGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 7 0.32
27 8 0.36
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATT
Done.