Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 118 of 250
Found at i:38038598 original size:50 final size:50
Alignment explanation
Indices: 38038523--38038747 Score: 203
Period size: 50 Copynumber: 4.5 Consensus size: 50
38038513 TGAATACACG
* *
38038523 TGTGTAGTACTAAGTGCAGGCTACTACATGTA-CTATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATC-AGACTGTTGAGTCGCA
*** * * *
38038573 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTA-TC-A-GACTGTTGAGTCGCA
* * *
38038624 TGTGTAGTACTAAGTGCAGGATACTACGTGTATCAGA-TGGTGAG--GTCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGACTGTTGAGTCG-CA
* * * *
38038672 TGTATTTAATACTAAGTGCAGGCTACTATATGTATCAGATTGTTG-GTCGCA
1 TG--TGTAGTACTAAGTGCAGGCTACTACATGTATCAGACTGTTGAGTCGCA
38038723 TGTGTAGTACTAAGTGCAGGCTACT
1 TGTGTAGTACTAAGTGCAGGCTACT
38038748 GTGCGCATCA
Statistics
Matches: 140, Mismatches: 24, Indels: 23
0.75 0.13 0.12
Matches are distributed among these distances:
47 1 0.01
48 7 0.05
49 22 0.16
50 62 0.44
51 40 0.29
52 5 0.04
53 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGACTGTTGAGTCGCA
Found at i:38038878 original size:27 final size:26
Alignment explanation
Indices: 38038848--38038899 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
38038838 GGGAAAATCG
38038848 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGTGG--ATATGTGCAAAGTTATT
* *
38038875 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
38038900 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 7 0.32
27 8 0.36
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATT
Found at i:38040495 original size:27 final size:27
Alignment explanation
Indices: 38040465--38040670 Score: 218
Period size: 27 Copynumber: 7.6 Consensus size: 27
38040455 ATATAGAGAT
** *
38040465 ATTACGATCATTTTATTCTACAAGGGC
1 ATTACGATCATTTTACCCTACAGGGGC
*
38040492 ATTAC-AGTCATTTTACCTTACAGGGGC
1 ATTACGA-TCATTTTACCCTACAGGGGC
* * *
38040519 ATTACGGTCATTTTACCCTACAAGGGT
1 ATTACGATCATTTTACCCTACAGGGGC
* * *
38040546 ATTATGATCATTTTACGCTATAGGGGC
1 ATTACGATCATTTTACCCTACAGGGGC
*
38040573 ATTACGGTCATTTTACCCTACAGGGGC
1 ATTACGATCATTTTACCCTACAGGGGC
* * *
38040600 ATTATGGTCATTTTACCCTATAGGGGC
1 ATTACGATCATTTTACCCTACAGGGGC
* *
38040627 ATTAC-AGTCATTTTGCCCTATAGGGGC
1 ATTACGA-TCATTTTACCCTACAGGGGC
* *
38040654 ATTATGGTCATTTTACC
1 ATTACGATCATTTTACC
38040671 TATTTTAGGG
Statistics
Matches: 149, Mismatches: 26, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 148 0.99
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
ATTACGATCATTTTACCCTACAGGGGC
Found at i:38040502 original size:54 final size:52
Alignment explanation
Indices: 38040444--38040673 Score: 244
Period size: 54 Copynumber: 4.3 Consensus size: 52
38040434 GGGCATAATC
* ** * **
38040444 GTCATTTTACCATATAGAGATATTACGATCATTTTATTCTACAAGGGCATTACA
1 GTCATTTTACC-TATAGGGGCATTACGGTCATTTTACCCTACAAGGGCATTA-A
* * *
38040498 GTCATTTTACCTTACAGGGGCATTACGGTCATTTTACCCTACAAGGGTATTAT
1 GTCATTTTACC-TATAGGGGCATTACGGTCATTTTACCCTACAAGGGCATTAA
* *
38040551 GATCATTTTACGCTATAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTATG
1 G-TCATTTTAC-CTATAGGGGCATTACGGTCATTTTACCCTACAAGGGCATTA-A
* * * * *
38040606 GTCATTTTACCCTATAGGGGCATTACAGTCATTTTGCCCTATAGGGGCATTATG
1 GTCATTTTA-CCTATAGGGGCATTACGGTCATTTTACCCTACAAGGGCATTA-A
38040660 GTCATTTTACCTAT
1 GTCATTTTACCTAT
38040674 TTTAGGGTTT
Statistics
Matches: 155, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
53 6 0.04
54 146 0.94
55 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (52 bp):
GTCATTTTACCTATAGGGGCATTACGGTCATTTTACCCTACAAGGGCATTAA
Found at i:38040549 original size:81 final size:81
Alignment explanation
Indices: 38040464--38040670 Score: 245
Period size: 81 Copynumber: 2.6 Consensus size: 81
38040454 CATATAGAGA
** *
38040464 TATTACGATCATTTTATTCTACAAGGGCATTACAGTCATTTTACCTTACAGGGGCATTACGGTCA
1 TATTACGATCATTTTACGCTACAAGGGCATTACAGTCATTTTACCCTACAGGGGCATTACGGTCA
38040529 TTTTACCCTACAAGGG
66 TTTTACCCTACAAGGG
* * * * *
38040545 TATTATGATCATTTTACGCTATAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTATGGTCA
1 TATTACGATCATTTTACGCTACAAGGGCATTACAGTCATTTTACCCTACAGGGGCATTACGGTCA
* *
38040610 TTTTACCCTATAGGGG
66 TTTTACCCTACAAGGG
* * * * * **
38040626 CATTAC-AGTCATTTTGCCCTATAGGGGCATTATGGTCATTTTACC
1 TATTACGA-TCATTTTACGCTACAAGGGCATTACAGTCATTTTACC
38040671 TATTTTAGGG
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
80 1 0.01
81 109 0.99
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (81 bp):
TATTACGATCATTTTACGCTACAAGGGCATTACAGTCATTTTACCCTACAGGGGCATTACGGTCA
TTTTACCCTACAAGGG
Found at i:38049289 original size:27 final size:27
Alignment explanation
Indices: 38049225--38049281 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
38049215 ATAATCATAC
*
38049225 ATCACATAGGGGCATAACAGTCATTTT
1 ATCACATGGGGGCATAACAGTCATTTT
*
38049252 ATCACATGGGGGCATAATAGTCA-TTT
1 ATCACATGGGGGCATAACAGTCATTTT
38049278 ATCA
1 ATCA
38049282 GTTAGGGGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (27 bp):
ATCACATGGGGGCATAACAGTCATTTT
Found at i:38056875 original size:28 final size:28
Alignment explanation
Indices: 38056839--38056940 Score: 134
Period size: 28 Copynumber: 3.6 Consensus size: 28
38056829 CAAATATGGT
38056839 ACTTAGTGTACGAAATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
*
38056867 ACTTAGTGTACGAAATATTG-GAAATGGC
1 ACTTAGTGTACGAAATATTGAG-AATGAC
* *
38056895 ACTTAGTGTGCGAGATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
* * *
38056923 ACGTAGTGTGCAAAATAT
1 ACTTAGTGTACGAAATAT
38056941 CAAATGATTC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
27 1 0.02
28 63 0.97
29 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (28 bp):
ACTTAGTGTACGAAATATTGAGAATGAC
Found at i:38056913 original size:56 final size:56
Alignment explanation
Indices: 38056834--38056940 Score: 160
Period size: 56 Copynumber: 1.9 Consensus size: 56
38056824 GCAATCAAAT
* * *
38056834 ATGGTACTTAGTGTACGAAATATTGAGAATGACACTTAGTGTACGAAATATTGGAA
1 ATGGCACTTAGTGTACGAAATATTGAGAATGACACGTAGTGTACAAAATATTGGAA
* * *
38056890 ATGGCACTTAGTGTGCGAGATATTGAGAATGACACGTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATATTGAGAATGACACGTAGTGTACAAAATAT
38056941 CAAATGATTC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (56 bp):
ATGGCACTTAGTGTACGAAATATTGAGAATGACACGTAGTGTACAAAATATTGGAA
Found at i:38064958 original size:26 final size:26
Alignment explanation
Indices: 38064929--38064979 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
38064919 TGCATTACTG
38064929 TTACTGGCAACTCTGCTGTGATATTA
1 TTACTGGCAACTCTGCTGTGATATTA
* *
38064955 TTACTGGCAGCTTTGCTGTGATATT
1 TTACTGGCAACTCTGCTGTGATATT
38064980 GGTGTGTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.41
Consensus pattern (26 bp):
TTACTGGCAACTCTGCTGTGATATTA
Found at i:38066260 original size:14 final size:16
Alignment explanation
Indices: 38066236--38066267 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
38066226 ATTTTCTATG
38066236 TTTATTATGTGT-GAA
1 TTTATTATGTGTGGAA
38066251 TTTA-TATGTGTGGAA
1 TTTATTATGTGTGGAA
38066266 TT
1 TT
38066268 GTCATGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (16 bp):
TTTATTATGTGTGGAA
Found at i:38078891 original size:27 final size:27
Alignment explanation
Indices: 38078813--38078980 Score: 131
Period size: 27 Copynumber: 6.2 Consensus size: 27
38078803 TTAGTTTACC
* * ***
38078813 AAATTACCAAAATACCCTTGGTTAACA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
38078840 AAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
38078867 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** * **
38078894 AAATTACTGAAATACCCTTGACCTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
** *
38078921 AAATTATTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * *
38078948 AAATTACCAAAGTACCCCTAATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
38078975 GAATTA
1 AAATTA
38078981 TTGTTTTACC
Statistics
Matches: 112, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
26 3 0.03
27 105 0.94
28 4 0.04
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:38078990 original size:27 final size:27
Alignment explanation
Indices: 38078963--38079180 Score: 217
Period size: 27 Copynumber: 8.1 Consensus size: 27
38078953 ACCAAAGTAC
* *
38078963 CCCT-AATTTATAGAATTATTGTTTTA
1 CCCTCAATTTACAGAATTACTGTTTTA
*
38078989 CCCTCAATTTTACAAAATTA-TCGTTTTA
1 CCCTCAA-TTTACAGAATTACT-GTTTTA
* *
38079017 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCAATTTACAGAATTACTGTTTTA
* * * *
38079044 CCCTAAATTTACAAAATTATTATTTTA
1 CCCTCAATTTACAGAATTACTGTTTTA
* *
38079071 CCCTCGATTGA-AGAATTACTGTTTTA
1 CCCTCAATTTACAGAATTACTGTTTTA
* * *
38079097 CCCTCGATTTACAAAATTACTATTTTA
1 CCCTCAATTTACAGAATTACTGTTTTA
*
38079124 CCCTCAATTTACAGAATTACTATTTTA
1 CCCTCAATTTACAGAATTACTGTTTTA
* * * **
38079151 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCAATTTACAGAATTACTGTTTTA
38079178 CCC
1 CCC
38079181 CTAGGGTGTT
Statistics
Matches: 161, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
26 26 0.16
27 112 0.70
28 23 0.14
ACGTcount: A:0.32, C:0.20, G:0.06, T:0.42
Consensus pattern (27 bp):
CCCTCAATTTACAGAATTACTGTTTTA
Found at i:38079079 original size:54 final size:54
Alignment explanation
Indices: 38078968--38079180 Score: 266
Period size: 54 Copynumber: 3.9 Consensus size: 54
38078958 AGTACCCCTA
* * * *
38078968 ATTTATAGAATTATTGTTTTACCCTCAATTTTACAAAATTATCGTTTTACCCTCG
1 ATTTATAGAATTACTGTTTTACCCT-AAATTTACAAAATTACCATTTTACCCTCG
**
38079023 ATTTATAGAATTACTGTTTTACCCTAAATTTACAAAATTATTATTTTACCCTCG
1 ATTTATAGAATTACTGTTTTACCCTAAATTTACAAAATTACCATTTTACCCTCG
* ** * *
38079077 ATTGA-AGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCA
1 ATTTATAGAATTACTGTTTTACCCTAAATTTACAAAATTACCATTTTACCCTCG
* * ** *
38079130 ATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 ATTTATAGAATTACTGTTTTACCCTAAATTTACAAAATTACCATTTTACCC
38079181 CTAGGGTGTT
Statistics
Matches: 144, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
53 48 0.33
54 72 0.50
55 24 0.17
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.43
Consensus pattern (54 bp):
ATTTATAGAATTACTGTTTTACCCTAAATTTACAAAATTACCATTTTACCCTCG
Found at i:38079123 original size:80 final size:80
Alignment explanation
Indices: 38078963--38079180 Score: 260
Period size: 80 Copynumber: 2.7 Consensus size: 80
38078953 ACCAAAGTAC
* * * *
38078963 CCCTAATTTATAGAATTATTGTTTTACCCTCAATTTTACAAAATTATCGTTTTACCCTCGATTTA
1 CCCTAATTTACAGAATTATTATTTTACCCTCGA-TTGACAAAATTATCGTTTTACCCTCGATTTA
* * *
38079028 TAGAATTACTGTTTTA
65 CAAAATTACTATTTTA
* *
38079044 CCCTAAATTTACAAAATTATTATTTTACCCTCGATTGA-AGAATTA-CTGTTTTACCCTCGATTT
1 CCCT-AATTTACAGAATTATTATTTTACCCTCGATTGACAAAATTATC-GTTTTACCCTCGATTT
38079107 ACAAAATTACTATTTTA
64 ACAAAATTACTATTTTA
* * * * *
38079124 CCCTCAATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 CCCT-AATTTACAGAATTATTATTTTACCCTCGATTGACAAAATTATCGTTTTACCC
38079181 CTAGGGTGTT
Statistics
Matches: 118, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
79 1 0.01
80 70 0.59
81 21 0.18
82 26 0.22
ACGTcount: A:0.32, C:0.20, G:0.06, T:0.42
Consensus pattern (80 bp):
CCCTAATTTACAGAATTATTATTTTACCCTCGATTGACAAAATTATCGTTTTACCCTCGATTTAC
AAAATTACTATTTTA
Found at i:38079716 original size:6 final size:6
Alignment explanation
Indices: 38079685--38079753 Score: 68
Period size: 6 Copynumber: 11.3 Consensus size: 6
38079675 TTGCATTCAC
* ** *
38079685 ATTCTG ATTTTG ATTCTG TAACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG -ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
38079734 ATTCTA ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
38079754 AATGTTTCTT
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
5 1 0.02
6 46 0.88
7 5 0.10
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:38081764 original size:54 final size:54
Alignment explanation
Indices: 38081698--38081975 Score: 308
Period size: 54 Copynumber: 5.1 Consensus size: 54
38081688 TTAGTTTACC
* *
38081698 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCCTAGTTTGTA
*
38081752 AAATTACTAAAATACCCTTTG-TTTATAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCC-TTGATTTATAAAATTACCAAAATACCCCTAGTTTGTA
* * * *
38081806 AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCTAGTTTTTA
1 AAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCCTAGTTTGTA
* * * * * *
38081860 AAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATA-CCCTTGATCTGTA
1 AAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCCTAG-TTTGTA
*** ** * * * * *
38081914 AAATTATTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCTAATTTATA
1 AAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCCTAGTTTGTA
*
38081968 GAATTACC
1 AAATTACC
38081976 GTTTTACCCT
Statistics
Matches: 190, Mismatches: 30, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
53 7 0.04
54 176 0.93
55 7 0.04
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCCTAGTTTGTA
Found at i:38081831 original size:81 final size:80
Alignment explanation
Indices: 38081679--38081975 Score: 321
Period size: 81 Copynumber: 3.7 Consensus size: 80
38081669 TATCCCTGTT
* ** * * *
38081679 TAAAATA-CTTTAGTTTACCAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCC
1 TAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCC
38081743 T-AGTTTGTAAAATTA
66 TGA-TTTGTAAAATTA
* *
38081758 CTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
1 -TAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCC
38081823 CTGATTTGTAAAATTA
65 CTGATTTGTAAAATTA
* * * * *
38081839 TCAAAATACCCCTAGTTTTTAAAATTACCAAAATACCCCT-GATTTGTGAAATTACTAAAATACC
1 T-AAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTAG-TTTATAAAATTACCAAAATACC
* *
38081903 CTTGATCTGTAAAATTA
64 CCTGATTTGTAAAATTA
* * ** * * * *
38081920 TTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCTAATTTATAGAATTACC
1 -TAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTAGTTTATAAAATTACC
38081976 GTTTTACCCT
Statistics
Matches: 184, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 9 0.05
81 173 0.94
82 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (80 bp):
TAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCC
TGATTTGTAAAATTA
Found at i:38081972 original size:27 final size:27
Alignment explanation
Indices: 38081698--38081975 Score: 279
Period size: 27 Copynumber: 10.3 Consensus size: 27
38081688 TTAGTTTACC
* ** **
38081698 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAATTTGTA
*
38081725 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
* * ** *
38081752 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTAATTTGTA
*
38081779 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
*
38081806 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
* * *
38081833 AAATTATCAAAATACCCCTAGTTTTTA
1 AAATTACCAAAATACCCCTAATTTGTA
* *
38081860 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTAATTTGTA
* * * *
38081887 AAATTACTAAAATACCCTTGATCTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
*** *
38081914 AAATTATTGAAATA-CCCTCAACTTGTA
1 AAATTACCAAAATACCCCT-AATTTGTA
* *
38081941 AAATTACCAAAGTACCCCTAATTTATA
1 AAATTACCAAAATACCCCTAATTTGTA
*
38081968 GAATTACC
1 AAATTACC
38081976 GTTTTACCCT
Statistics
Matches: 209, Mismatches: 40, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
26 3 0.01
27 202 0.97
28 4 0.02
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAATTTGTA
Found at i:38081983 original size:27 final size:27
Alignment explanation
Indices: 38081961--38082228 Score: 322
Period size: 27 Copynumber: 9.9 Consensus size: 27
38081951 AGTACCCCTA
* *
38081961 ATTTATAGAATTACCGTTTTACCCTCA
1 ATTTATAGAATTACCATTTTACCCTCG
* *
38081988 ATTTACAAAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* ***
38082015 ATTTATAGAAGTATTGTTTTACCGC-CG
1 ATTTATAGAATTACCATTTTACC-CTCG
38082042 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* * * * *
38082069 ATTTACAAAATTACTATTTTACCTTCA
1 ATTTATAGAATTACCATTTTACCCTCG
* *
38082096 ATTTAAAGAATTACTATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* *
38082123 ATTGATAGAATTACTATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* * *
38082150 ATTTACAAAATTACTATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
*
38082177 ATTTATAGAATTACCGTTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
*
38082204 ATTTATAAAATTACCATTTTACCCT
1 ATTTATAGAATTACCATTTTACCCT
38082229 TAGGGTGTTA
Statistics
Matches: 205, Mismatches: 34, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.00
27 203 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
ATTTATAGAATTACCATTTTACCCTCG
Found at i:38082011 original size:54 final size:54
Alignment explanation
Indices: 38081926--38082228 Score: 342
Period size: 54 Copynumber: 5.6 Consensus size: 54
38081916 ATTATTGAAA
* * *** * *
38081926 TACCCTCAACTTGTAAAATTACCAAAGTACCC-CTAATTTATAGAATTACCGTTT
1 TACCCTCAATTTATAAAATTACCATTTTACCCTC-GATTTATAGAATTACTGTTT
* * *
38081980 TACCCTCAATTTACAAAATTACCATTTTACCCTCGATTTATAGAAGTATTGTTT
1 TACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
* * * * *
38082034 TACCGC-CGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTT
1 TACC-CTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
* * * *
38082088 TACCTTCAATTTA-AAGAATTACTATTTTACCCTCGATTGATAGAATTACTATTT
1 TACCCTCAATTTATAA-AATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
* * * *
38082142 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
*
38082196 TACCCTCGATTTATAAAATTACCATTTTACCCT
1 TACCCTCAATTTATAAAATTACCATTTTACCCT
38082229 TAGGGTGTTA
Statistics
Matches: 212, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.00
54 207 0.98
55 4 0.02
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (54 bp):
TACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
Found at i:38082011 original size:81 final size:79
Alignment explanation
Indices: 38081926--38082228 Score: 315
Period size: 81 Copynumber: 3.7 Consensus size: 79
38081916 ATTATTGAAA
* *** * * *
38081926 TACCCTCAACTTGTAAAATTACCAAAGTACCCCTAATTTATAGAATTACCGTTTTACCCTCAATT
1 TACCCTCAA-TT-TAAAATTACTATTTTACCCCTGATTTATAGAATTACCATTTTACCCTCGATT
*
38081991 TACAAAATTACCATTT
64 TACAAAATTACTATTT
* * * *
38082007 TACCCTCGATTTATAGAAGTATTGTTTTACCGCC-GATTTATAGAATTACCATTTTACCCTCGAT
1 TACCCTCAATTTA-A-AATTACTATTTTACC-CCTGATTTATAGAATTACCATTTTACCCTCGAT
38082071 TTACAAAATTACTATTT
63 TTACAAAATTACTATTT
* * *
38082088 TACCTTCAATTTAAAGAATTACTATTTTA-CCCTCGATTGATAGAATTACTATTTTACCCTCGAT
1 TACCCTCAATTT-AA-AATTACTATTTTACCCCT-GATTTATAGAATTACCATTTTACCCTCGAT
38082152 TTACAAAATTACTATTT
63 TTACAAAATTACTATTT
* ** *
38082169 TACCCTCGATTTATAGAATTACCGTTTTA-CCCTCGATTTATAAAATTACCATTTTACCCT
1 TACCCTCAATTTA-A-AATTACTATTTTACCCCT-GATTTATAGAATTACCATTTTACCCT
38082229 TAGGGTGTTA
Statistics
Matches: 189, Mismatches: 26, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
79 4 0.02
80 5 0.03
81 177 0.94
82 3 0.02
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (79 bp):
TACCCTCAATTTAAAATTACTATTTTACCCCTGATTTATAGAATTACCATTTTACCCTCGATTTA
CAAAATTACTATTT
Found at i:38082774 original size:6 final size:6
Alignment explanation
Indices: 38082732--38082794 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
38082722 TTGCATTCAC
* * *
38082732 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
38082781 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
38082795 AAAGTTTCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
5 3 0.07
6 38 0.83
7 4 0.09
8 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:38086215 original size:20 final size:20
Alignment explanation
Indices: 38086186--38086230 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
38086176 AGCACATGTA
* *
38086186 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAAATT
*
38086206 TTCATCAAATTTTACAAATT
1 TTCATAAAATTTTACAAATT
38086226 TTCAT
1 TTCAT
38086231 TTTACTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAAATT
Found at i:38090851 original size:14 final size:13
Alignment explanation
Indices: 38090828--38090859 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
38090818 GGGATATCAA
38090828 AACAATAATTAAG
1 AACAATAATTAAG
38090841 AACACATAATTAAG
1 AACA-ATAATTAAG
38090855 AACAA
1 AACAA
38090860 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:38094463 original size:35 final size:36
Alignment explanation
Indices: 38094416--38094514 Score: 98
Period size: 35 Copynumber: 2.8 Consensus size: 36
38094406 TATATCTGAG
* *
38094416 TATACAATTTCAATATAAG-TTCACATGTAATCGAA
1 TATACAAATTCAATATAAGCTTCACATGTAACCGAA
* * * *
38094451 TACTA-AAATTCAACAT-AGCCTCACATGCAGCCGAA
1 TA-TACAAATTCAATATAAGCTTCACATGTAACCGAA
*
38094486 TATACAAGTTCAATATAAGCTT-ACATGTA
1 TATACAAATTCAATATAAGCTTCACATGTA
38094515 CTTACCTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
34 4 0.08
35 40 0.80
36 6 0.12
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.29
Consensus pattern (36 bp):
TATACAAATTCAATATAAGCTTCACATGTAACCGAA
Found at i:38098096 original size:27 final size:27
Alignment explanation
Indices: 38098077--38098176 Score: 112
Period size: 27 Copynumber: 3.6 Consensus size: 27
38098067 ATATATTAAG
*
38098077 TCCGCACACTCAGTGCTATATAATCAA
1 TCCGCACACTTAGTGCTATATAATCAA
38098104 -CTCGCACACTTAGTGCTATATAATCAA
1 TC-CGCACACTTAGTGCTATATAATCAA
* * *
38098131 ACTCGCACACTTAGTGCTATACAATTTAAA
1 TC-CGCACACTTAGTGCTATATAA--TCAA
*
38098161 CCCGCACACTTAGTGC
1 TCCGCACACTTAGTGC
38098177 CAATCTCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
26 1 0.02
27 24 0.37
28 22 0.34
29 14 0.22
30 4 0.06
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (27 bp):
TCCGCACACTTAGTGCTATATAATCAA
Found at i:38098142 original size:28 final size:28
Alignment explanation
Indices: 38098079--38098176 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
38098069 ATATTAAGTC
*
38098079 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
38098106 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
38098134 CGCACACTTAGTGCTATACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
38098163 CGCACACTTAGTGC
1 CGCACACTTAGTGC
38098177 CAATCTCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
27 22 0.34
28 24 0.37
29 19 0.29
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:38106064 original size:18 final size:18
Alignment explanation
Indices: 38106029--38106095 Score: 66
Period size: 18 Copynumber: 3.7 Consensus size: 18
38106019 GCCTAATTCG
* *
38106029 GTAATAGTAAATAGTGCA
1 GTAATAGTAAACAATGCA
*
38106047 GTAATATTAAACAATGCA
1 GTAATAGTAAACAATGCA
*
38106065 AT-ATCAGTAAACAATGCA
1 GTAAT-AGTAAACAATGCA
38106083 GT-ATCAGTAAACA
1 GTAAT-AGTAAACA
38106096 GTATGCAAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
17 2 0.05
18 40 0.95
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.25
Consensus pattern (18 bp):
GTAATAGTAAACAATGCA
Found at i:38106467 original size:27 final size:27
Alignment explanation
Indices: 38106421--38106604 Score: 185
Period size: 27 Copynumber: 6.8 Consensus size: 27
38106411 AAACATACAT
* *
38106421 CACATAGGGGCAAAACAGTCATCTGAC
1 CACATAAGGGCAAAACAGTCATCTTAC
* * * *
38106448 CATATAAGGGCAATATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATCTTAC
* **
38106475 TACATAAGGGCAAAACAACCAT-TCTAC
1 CACATAAGGGCAAAACAGTCATCT-TAC
*
38106502 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATCTTAC
* **
38106529 CACATAAGGGCAAAATAGTTGT-TCTAC
1 CACATAAGGGCAAAACAGTCATCT-TAC
*
38106556 CACATAAGGGCAAAACAATCA-CTTTAC
1 CACATAAGGGCAAAACAGTCATC-TTAC
*
38106583 CACATAAGGGCAAAATAGTCAT
1 CACATAAGGGCAAAACAGTCAT
38106605 TTCATCAAAT
Statistics
Matches: 127, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
26 2 0.02
27 123 0.97
28 2 0.02
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.22
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATCTTAC
Found at i:38106487 original size:54 final size:53
Alignment explanation
Indices: 38106421--38106604 Score: 224
Period size: 54 Copynumber: 3.4 Consensus size: 53
38106411 AAACATACAT
* * * *
38106421 CACATAGGGGCAAAACAGTCATCTGACCATATAAGGGCAATATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATCT-ACCACATAAGGGCAAAACAGTCATTTTAC
* **
38106475 TACATAAGGGCAAAACAACCATTCTACCACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCA-TCTACCACATAAGGGCAAAACAGTCATTTTAC
* ** * *
38106529 CACATAAGGGCAAAATAGTTGTTCTACCACATAAGGGCAAAACAATCACTTTAC
1 CACATAAGGGCAAAACAG-TCATCTACCACATAAGGGCAAAACAGTCATTTTAC
*
38106583 CACATAAGGGCAAAATAGTCAT
1 CACATAAGGGCAAAACAGTCAT
38106605 TTCATCAAAT
Statistics
Matches: 111, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 2 0.02
54 106 0.95
55 3 0.03
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.22
Consensus pattern (53 bp):
CACATAAGGGCAAAACAGTCATCTACCACATAAGGGCAAAACAGTCATTTTAC
Found at i:38106561 original size:81 final size:81
Alignment explanation
Indices: 38106421--38106606 Score: 257
Period size: 81 Copynumber: 2.3 Consensus size: 81
38106411 AAACATACAT
* * * * * *
38106421 CACATAGGGGCAAAACAGTCATCTGACCATATAAGGGCAATATAGTCATTTTACTACATAAGGGC
1 CACATAAGGGCAAAACAGTCATTTGACCACATAAGGGCAAAATAGTCATTCTACCACATAAGGGC
38106486 AAAACAACCA-TTCTAC
66 AAAACAACCACTT-TAC
* **
38106502 CACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTTGTTCTACCACATAAGGGC
1 CACATAAGGGCAAAACAGTCATTTGACCACATAAGGGCAAAATAGTCATTCTACCACATAAGGGC
*
38106567 AAAACAATCACTTTAC
66 AAAACAACCACTTTAC
*
38106583 CACATAAGGGCAAAATAGTCATTT
1 CACATAAGGGCAAAACAGTCATTT
38106607 CATCAAATTA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 91 0.98
82 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.23
Consensus pattern (81 bp):
CACATAAGGGCAAAACAGTCATTTGACCACATAAGGGCAAAATAGTCATTCTACCACATAAGGGC
AAAACAACCACTTTAC
Found at i:38112976 original size:53 final size:53
Alignment explanation
Indices: 38112913--38113017 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
38112903 TTCCTTTTTA
* * * * *
38112913 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* *
38112966 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT
38113018 CGTAGTTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:38118802 original size:21 final size:21
Alignment explanation
Indices: 38118778--38118847 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
38118768 TGATCTAAAC
38118778 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* *
38118799 TCA-TGACTTATGTGACATCTGA-T
1 TCATTGA-GT-TGTG--GTCTGAGT
38118822 CTCATTGAGTTGTGGTCTGAGT
1 -TCATTGAGTTGTGGTCTGAGT
38118844 TCAT
1 TCAT
38118848 GATGTATGTG
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
20 3 0.08
21 13 0.34
22 5 0.13
23 5 0.13
24 9 0.24
25 3 0.08
ACGTcount: A:0.19, C:0.14, G:0.26, T:0.41
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:38127692 original size:55 final size:53
Alignment explanation
Indices: 38127505--38127756 Score: 230
Period size: 55 Copynumber: 4.8 Consensus size: 53
38127495 TGGGTACCTT
* * * *
38127505 ACCATTGCCATGACTTGTCATGGTCTTACATGGTATCC-T---TT-TGAAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTC
* * *
38127554 ACCATTCCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
* * * *
38127607 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G-AACTC
* * * *
38127662 ATCAGTGCCATGTCTTAACATGGTCTTACATGGTATCCTTGCCTTA-GAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTC
* * *
38127716 ACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
38127757 AAGCCCTACT
Statistics
Matches: 167, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 34 0.20
50 1 0.01
52 2 0.01
53 47 0.28
54 9 0.05
55 72 0.43
56 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
Found at i:38134938 original size:16 final size:16
Alignment explanation
Indices: 38134919--38134949 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
38134909 CTTCTTCACT
38134919 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
38134935 TACTTACTTACTTAA
1 TACTCACTTACTTAA
38134950 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:38134955 original size:20 final size:20
Alignment explanation
Indices: 38134916--38134955 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
38134906 AAACTTCTTC
* *
38134916 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
38134936 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
38134956 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:38135315 original size:55 final size:54
Alignment explanation
Indices: 38135125--38135376 Score: 261
Period size: 55 Copynumber: 4.7 Consensus size: 54
38135115 ACAATCGTAC
* * * * *
38135125 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* *
38135174 CTTACCATTGCCATGTCC-CGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATG-CCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* * *
38135227 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AA
* * *
38135282 CTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* *
38135335 CTTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATC
1 C-TTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATC
38135377 TTTAAACCCT
Statistics
Matches: 170, Mismatches: 20, Indels: 20
0.81 0.10 0.10
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 6 0.04
53 44 0.26
54 7 0.04
55 73 0.43
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
Found at i:38135316 original size:108 final size:110
Alignment explanation
Indices: 38135172--38135372 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
38135162 ATCCTTTTGA
*
38135172 AACTTACCATTGCCATGTCCCGACATGGTCTTACATGGTATCCTTGCCTTATG-AAC-TCACCAA
1 AACTTACCAATGCCATGTCCCGACATGGTCTTACATGGTATCCTTGCCTTA-GAAACTTCACCAA
38135235 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
38135280 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAACTTTACCAAT
1 AACTTACCAATGCCATGTCCCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACTTCACCAAT
*
38135345 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
38135373 TATCTTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 50 0.60
109 6 0.07
110 27 0.32
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCCCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACTTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:38135749 original size:30 final size:30
Alignment explanation
Indices: 38135715--38135771 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
38135705 GTCCTTGACT
*
38135715 TAAACTTTGGCAAAATTACACTTTTGCACC
1 TAAACTTTGACAAAATTACACTTTTGCACC
* * *
38135745 TAAACTTTTACATATTTACACTTTTGC
1 TAAACTTTGACAAAATTACACTTTTGC
38135772 CCCAAGGCTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (30 bp):
TAAACTTTGACAAAATTACACTTTTGCACC
Found at i:38140543 original size:19 final size:19
Alignment explanation
Indices: 38140519--38140557 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
38140509 GCCATATGAT
38140519 ATGGCTAGTTTGTGTTTGA
1 ATGGCTAGTTTGTGTTTGA
38140538 ATGGCTAGTTTGTGTTTGA
1 ATGGCTAGTTTGTGTTTGA
38140557 A
1 A
38140558 CTTATAGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.18, C:0.05, G:0.31, T:0.46
Consensus pattern (19 bp):
ATGGCTAGTTTGTGTTTGA
Found at i:38149972 original size:27 final size:27
Alignment explanation
Indices: 38149942--38150155 Score: 154
Period size: 27 Copynumber: 7.9 Consensus size: 27
38149932 TACCCTATAG
*
38149942 GGGTATTTCGATAAATTTACACAAC-AA
1 GGGTATTTCGATAATTTTACA-AACTAA
* * *
38149969 GGGTATTTAGGTAATTTTACAAACTAG
1 GGGTATTTCGATAATTTTACAAACTAA
* * * **
38149996 GGGTACTTCAATAATTTTAC-AATTTG
1 GGGTATTTCGATAATTTTACAAACTAA
*
38150022 GGGTTATTTC-AGTAATTTTACAAA-TAGG
1 GGG-TATTTCGA-TAATTTTACAAACTA-A
*
38150050 GGGTATTTCGGTAATTTTACAAA-TAGA
1 GGGTATTTCGATAATTTTACAAACTA-A
* *
38150077 GGGTATTTCGGTAATTTTACAAA-TAGG
1 GGGTATTTCGATAATTTTACAAACTA-A
* * *
38150104 GGGCATTTCGGTAATTTTACAAA-TCA
1 GGGTATTTCGATAATTTTACAAACTAA
* *
38150130 GATGTATTTCAATAATTTTACAAACT
1 G-GGTATTTCGATAATTTTACAAACT
38150156 GGGGTCTTAA
Statistics
Matches: 157, Mismatches: 22, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
26 12 0.08
27 138 0.88
28 7 0.04
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAACTAA
Found at i:38149997 original size:54 final size:53
Alignment explanation
Indices: 38149941--38150153 Score: 216
Period size: 54 Copynumber: 3.9 Consensus size: 53
38149931 TTACCCTATA
* *
38149941 GGGGTATTTCGATAAATTTACACAACAAGGGTATTTAGGTAATTTTACAAACTA-
1 GGGGTATTTCGATAATTTTACA-AATAAGGGTATTTAGGTAATTTTACAAA-TAG
* * * **
38149995 GGGGTACTTCAATAATTTTACAATTTGGGGTTATTTCA-GTAATTTTACAAATAG
1 GGGGTATTTCGATAATTTTACAAATAAGGG-TATTT-AGGTAATTTTACAAATAG
* *
38150049 GGGGTATTTCGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTTACAAATAG
1 GGGGTATTTCGATAATTTTACAAATA-AGGGTATTTAGGTAATTTTACAAATAG
* * * * *
38150103 GGGGCATTTCGGTAATTTTACAAATCAGATGTATTTCA-ATAATTTTACAAA
1 GGGGTATTTCGATAATTTTACAAATAAG-GGTATTT-AGGTAATTTTACAAA
38150154 CTGGGGTCTT
Statistics
Matches: 133, Mismatches: 19, Indels: 14
0.80 0.11 0.08
Matches are distributed among these distances:
53 8 0.06
54 121 0.91
55 4 0.03
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (53 bp):
GGGGTATTTCGATAATTTTACAAATAAGGGTATTTAGGTAATTTTACAAATAG
Found at i:38150063 original size:81 final size:81
Alignment explanation
Indices: 38149969--38150160 Score: 228
Period size: 81 Copynumber: 2.4 Consensus size: 81
38149959 TACACAACAA
* * * **
38149969 GGGTATTTAGGTAATTTTACAAACTAGGGGTACTTCAATAATTTTACAATTTGGGGTTATTTCAG
1 GGGTATTTCGGTAATTTTACAAACTAGGGGTACTTCAATAATTTTACAAATAGGGGGCATTTCAG
38150034 TAATTTTACAAAT-AGG
66 TAATTTTACAAATCA-G
* ** *
38150050 GGGTATTTCGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTTACAAATAGGGGGCATTTCG
1 GGGTATTTCGGTAATTTTACAAACTAG-GGGTACTTCAATAATTTTACAAATAGGGGGCATTTCA
38150114 GTAATTTTACAAATCAG
65 GTAATTTTACAAATCAG
** **
38150131 ATGTATTTCAATAATTTTACAAACT-GGGGT
1 GGGTATTTCGGTAATTTTACAAACTAGGGGT
38150161 CTTAACGACC
Statistics
Matches: 95, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
80 7 0.07
81 86 0.91
82 2 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (81 bp):
GGGTATTTCGGTAATTTTACAAACTAGGGGTACTTCAATAATTTTACAAATAGGGGGCATTTCAG
TAATTTTACAAATCAG
Found at i:38152028 original size:46 final size:46
Alignment explanation
Indices: 38151907--38152035 Score: 161
Period size: 46 Copynumber: 2.8 Consensus size: 46
38151897 TAACCCACCT
* * * * *
38151907 ATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGTGCTTGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGATTGCATCC
* * *
38151953 ATAAGTGAACTCAGACTCAACTCAACGAGTTCGGAT-ATTCTCATTC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGATT-GCATCC
*
38151999 ATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATG
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
38152036 CCCAAATATC
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
45 2 0.03
46 69 0.97
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGATTGCATCC
Found at i:38154280 original size:14 final size:15
Alignment explanation
Indices: 38154244--38154278 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
38154234 TAAAGATAAC
*
38154244 AAGAAAATC-GAATA
1 AAGAAAACCAGAATA
38154258 AAGAAAACCAGAATA
1 AAGAAAACCAGAATA
38154273 AAGAAA
1 AAGAAA
38154279 CCCAAGATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.69, C:0.09, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAAACCAGAATA
Found at i:38161448 original size:37 final size:37
Alignment explanation
Indices: 38161398--38161476 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
38161388 TTATTACGAA
* * *
38161398 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
38161435 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
38161472 GTCTT
1 GTCTT
38161477 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:38161726 original size:47 final size:47
Alignment explanation
Indices: 38161594--38162212 Score: 1109
Period size: 47 Copynumber: 13.1 Consensus size: 47
38161584 GCCTTCGGGA
* * * * * *
38161594 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38161641 CCTGTCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38161687 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38161734 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38161781 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38161828 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38161875 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38161922 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38161970 C-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38162016 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38162063 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38162110 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38162159 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38162206 CTTATCA
1 CTTATCA
38162213 TCATTTCATA
Statistics
Matches: 556, Mismatches: 10, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
46 85 0.15
47 378 0.68
48 46 0.08
49 47 0.08
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:38165736 original size:40 final size:40
Alignment explanation
Indices: 38165691--38165926 Score: 303
Period size: 40 Copynumber: 5.9 Consensus size: 40
38165681 CGAATACACG
* * * * *
38165691 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* *** * *
38165731 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
*
38165771 TCA-CTGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
*
38165810 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
38165850 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* * *
38165890 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
38165927 TAGTAACTCG
Statistics
Matches: 177, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 33 0.19
40 144 0.81
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:38165894 original size:80 final size:80
Alignment explanation
Indices: 38165691--38165926 Score: 339
Period size: 80 Copynumber: 3.0 Consensus size: 80
38165681 CGAATACACG
* * * * * * * *
38165691 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
* * *
38165756 TTTAGCACGGATATA
66 CTTAGCCCGGATACA
* *
38165771 TCACT-GCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
38165835 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
*
38165850 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
38165915 CTTAGCCCGGAT
66 CTTAGCCCGGAT
38165927 TAGTAACTCG
Statistics
Matches: 139, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
79 67 0.48
80 72 0.52
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
CTTAGCCCGGATACA
Found at i:38165975 original size:38 final size:39
Alignment explanation
Indices: 38165708--38166042 Score: 181
Period size: 40 Copynumber: 8.5 Consensus size: 39
38165698 CATGATTGCT
* * *
38165708 CTTCGGGACCTAGCCCGGA-TA-TAACACCAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTAGTAAC-TC-GCACAAATGC
** * * *
38165747 TCTTCGGGGTTTAGCACGGATATA-TCACT-GCACGAATGC
1 -CTTCGGGACTTAGCCCGGAT-TAGTAACTCGCACAAATGC
* * * * *
38165786 TCTTCGGAACTTAGCCCGGA-TACATCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATTA-GTAACTCGCACAAATGC
* * * * **
38165826 TCTTCGGAACTTAGCCCGGA-TACATCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTA-GTAACTCGCACAAATGC
* * * * **
38165866 TCTTCGGAACTTAGCCCGGA-TACATCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTA-GTAACTCGCACAAATGC
38165906 TCTTCGGGACTTAGCCCGGATTAGTAACTCGCAC-AATGC
1 -CTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAATGC
38165945 CTTCGGG-CTTAG-CCGGAATTAGTAATCTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-ATTAGTAA-CTCGCACAAATGC
* * * *
38165984 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GC
1 CTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCACAAATGC
38166024 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
38166043 CATCATTCGA
Statistics
Matches: 260, Mismatches: 20, Indels: 30
0.84 0.06 0.10
Matches are distributed among these distances:
36 4 0.02
37 15 0.06
38 16 0.06
39 45 0.17
40 154 0.59
41 21 0.08
42 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAATGC
Found at i:38166386 original size:29 final size:29
Alignment explanation
Indices: 38166347--38166425 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
38166337 CTTAATAATC
*
38166347 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
38166377 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
38166406 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
38166426 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:38166468 original size:43 final size:43
Alignment explanation
Indices: 38166407--38166509 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
38166397 TGCATTTCAA
38166407 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
38166450 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
38166493 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
38166510 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:38168760 original size:46 final size:46
Alignment explanation
Indices: 38168551--38168910 Score: 587
Period size: 46 Copynumber: 7.7 Consensus size: 46
38168541 CTTCGGGACT
* * * * * *
38168551 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
*
38168598 TGTCACATATATATACAC-TTCACATTCATCACATCGGCCATTAGGCC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
38168645 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 -TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
38168692 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 -TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
38168739 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
38168785 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
38168831 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 -TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
38168878 TATCATATATATACACTTTCACATTCATCACAT
1 TATCACATATATACACTTTCACATTCATCACAT
38168911 ATATACTTTC
Statistics
Matches: 299, Mismatches: 9, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
46 134 0.45
47 129 0.43
48 27 0.09
49 9 0.03
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (46 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:38168764 original size:93 final size:93
Alignment explanation
Indices: 38168549--38168910 Score: 602
Period size: 93 Copynumber: 3.9 Consensus size: 93
38168539 CCCTTCGGGA
* * * * * * *
38168549 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCAC--ATATATAC
38168614 AC-TTCACATTCATCACATCGGCCATTAGGC
63 ACTTTCACATTCATCACATCGGCCATTAGGC
38168644 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATACAC
38168709 TTTCACATTCATCACATCGGCCATTAGGC
65 TTTCACATTCATCACATCGGCCATTAGGC
38168738 C-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACT
38168802 TTCACATTCATCACATCGGCCATTAGGC
66 TTCACATTCATCACATCGGCCATTAGGC
*
38168830 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCATATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACT
38168895 TTCACATTCATCACAT
66 TTCACATTCATCACAT
38168911 ATATACTTTC
Statistics
Matches: 256, Mismatches: 8, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
92 46 0.18
93 134 0.52
94 31 0.12
95 45 0.18
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (93 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGC
Found at i:38168912 original size:25 final size:23
Alignment explanation
Indices: 38168886--38168933 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
38168876 CCTATCATAT
*
38168886 ATATACACTTTCACATTCATCAC
1 ATATATACTTTCACATTCATCAC
38168909 ATATATACTTTCACATTCATCAC
1 ATATATACTTTCACATTCATCAC
38168932 AT
1 AT
38168934 CGGCCATTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.38
Consensus pattern (23 bp):
ATATATACTTTCACATTCATCAC
Found at i:38168922 original size:69 final size:71
Alignment explanation
Indices: 38168833--38168981 Score: 266
Period size: 71 Copynumber: 2.1 Consensus size: 71
38168823 ATTAGGCCTT
38168833 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTAT-CATATATATACACTTT
1 ATCACATATATA-ACTTTCACATTCATCACATCGGCCATTAGGCCTATACATATATATACACTTT
38168897 CACATTC
65 CACATTC
38168904 ATCACATATAT-ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACACTTT
1 ATCACATATATAACTTTCACATTCATCACATCGGCCATTAGGCCTAT-ACATATATATACACTTT
38168968 CACATTC
65 CACATTC
38168975 ATCACAT
1 ATCACAT
38168982 CGGCCATTAG
Statistics
Matches: 76, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
69 35 0.46
71 41 0.54
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (71 bp):
ATCACATATATAACTTTCACATTCATCACATCGGCCATTAGGCCTATACATATATATACACTTTC
ACATTC
Found at i:38168993 original size:117 final size:117
Alignment explanation
Indices: 38168786--38169170 Score: 434
Period size: 117 Copynumber: 3.1 Consensus size: 117
38168776 CATTAGGCCT
38168786 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 ATCACATATATA-ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
*
38168851 CACATTCATCACATCGGCCATTAGGCCTATCATATATATACACTTTCACATTC
65 CACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTC
38168904 ATCACATATAT-ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATACACTT
1 ATCACATATATAACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTT
38168967 TCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTC
64 TCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTC
* * **
38169021 ATCACATCGGCCAT-TAGGCCCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 ATCACAT-----ATATA---ACTTTCAC--AT-T-CA---TCACA-TCGGC-CAT-------TAG
38169085 GCCTTATCACATATATTTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
42 GCCTTATCACATATA--TACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATAT
38169150 ACACTTTCACATTC
104 ACACTTTCACATTC
38169164 ATCACAT
1 ATCACAT
38169171 CGGCCATTAG
Statistics
Matches: 231, Mismatches: 5, Indels: 37
0.85 0.02 0.14
Matches are distributed among these distances:
115 6 0.03
116 32 0.14
117 72 0.31
118 11 0.05
121 1 0.00
122 2 0.01
125 6 0.03
127 2 0.01
128 1 0.00
129 2 0.01
132 5 0.02
133 3 0.01
134 3 0.01
140 5 0.02
141 6 0.03
142 41 0.18
143 33 0.14
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.32
Consensus pattern (117 bp):
ATCACATATATAACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTC
Found at i:38168993 original size:210 final size:211
Alignment explanation
Indices: 38168694--38169123 Score: 785
Period size: 210 Copynumber: 2.0 Consensus size: 211
38168684 ATTAGGCCTT
38168694 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTC
1 ATCACATATATA-ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTC
38168759 ACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCATCACATCGGCCA
65 ACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCATCACATCGGCCA
*
38168824 TTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TAT-CATATA
130 TTAGGCCCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATACATATA
38168887 TATACACTTTCACATTC
195 TATACACTTTCACATTC
38168904 ATCACATATAT-ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACACTTT
1 ATCACATATATAACTTTCACATTCATCACATCGGCCATTAGGCCTATCAC--ATATATACACTTT
38168968 CACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCATCACATCGGCC
64 CACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCATCACATCGGCC
38169033 ATTAGGCCCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
129 ATTAGGCCCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT-ACATA
*
38169098 TATTTACACTTTCACATTC
193 TATATACACTTTCACATTC
38169117 ATCACAT
1 ATCACAT
38169124 CGGCCATTAG
Statistics
Matches: 213, Mismatches: 2, Indels: 7
0.96 0.01 0.03
Matches are distributed among these distances:
208 38 0.18
210 143 0.67
211 3 0.01
213 29 0.14
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.32
Consensus pattern (211 bp):
ATCACATATATAACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCATCACATCGGCCAT
TAGGCCCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATACATATAT
ATACACTTTCACATTC
Found at i:38169002 original size:69 final size:69
Alignment explanation
Indices: 38168849--38168981 Score: 203
Period size: 69 Copynumber: 1.9 Consensus size: 69
38168839 TATATACACT
* *
38168849 TTCACATTCATCACATCGGCCATTAGGCCTATCATATATATACACTTTCACATTCATCACATATA
1 TTCACACTCATCACATCGGCCATTAGGCCTATCATATATATACACTTTCACATTCATCACATACA
* *
38168914 TACT
66 GACA
*
38168918 TTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACACTTTCACATTCATCACAT
1 TTCACACTCATCACATCGGCCATTAGGCCTAT--CATATATATACACTTTCACATTCATCACAT
38168982 CGGCCATTAG
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
69 32 0.52
71 30 0.48
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.34
Consensus pattern (69 bp):
TTCACACTCATCACATCGGCCATTAGGCCTATCATATATATACACTTTCACATTCATCACATACA
GACA
Found at i:38169125 original size:49 final size:47
Alignment explanation
Indices: 38168904--38169189 Score: 499
Period size: 47 Copynumber: 6.1 Consensus size: 47
38168894 TTTCACATTC
38168904 ATCACATATAT--ACTTTCACATTCATCACATCGGCCATTAGGCC-T
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
38168948 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-T
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
38168996 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
38169043 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
38169090 ATCACATATATTTACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATA--TACACTTTCACATTCATCACATCGGCCATTAGGCCTT
38169139 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
38169186 ATCA
1 ATCA
38169190 TCATTTCATA
Statistics
Matches: 234, Mismatches: 1, Indels: 11
0.95 0.00 0.04
Matches are distributed among these distances:
44 5 0.02
46 46 0.20
47 98 0.42
48 38 0.16
49 47 0.20
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:38169143 original size:96 final size:93
Alignment explanation
Indices: 38168904--38169189 Score: 497
Period size: 96 Copynumber: 3.0 Consensus size: 93
38168894 TTTCACATTC
38168904 ATCACATATAT--ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACACTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCAC--ATATATACACTT
38168967 TCACATTCATCACATCGGCCATTAGGCC-T
64 TCACATTCATCACATCGGCCATTAGGCCTT
38168996 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATACACTTT
38169061 CACATTCATCACATCGGCCATTAGGCCTT
65 CACATTCATCACATCGGCCATTAGGCCTT
38169090 ATCACATATATTTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 ATCACATATA--TACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATACACT
38169155 TTCACATTCATCACATCGGCCATTAGGCCTT
63 TTCACATTCATCACATCGGCCATTAGGCCTT
38169186 ATCA
1 ATCA
38169190 TCATTTCATA
Statistics
Matches: 187, Mismatches: 0, Indels: 10
0.95 0.00 0.05
Matches are distributed among these distances:
92 11 0.06
93 40 0.21
94 41 0.22
95 10 0.05
96 85 0.45
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (93 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTT
Found at i:38173040 original size:93 final size:93
Alignment explanation
Indices: 38172928--38173100 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
38172918 CGCCCATAAG
* * *
38172928 CGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
38172993 ACAAGTTTGGATGCCTAGTTACATCTCA
66 ACAAGTTCGGATGCCTAGTTACATCTCA
* * * *
38173021 CGAACTCGAACTCAACTCAACGAGTTCGGATATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
38173086 ACGAGTTCGGATGCC
66 ACAAGTTCGGATGCC
38173101 CAAATATCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATCTCA
Found at i:38173096 original size:46 final size:46
Alignment explanation
Indices: 38172921--38173097 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
38172911 TGTAACCCGC
* ***
38172921 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACAAGTTCGGATATTCGCAT
* * * *
38172967 CCATAAGTGAACTCAGACTCAACTCAACAAGTTTGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACAAGTTCGGA----TA-TTCGCAT
* * *
38173017 -C-TCA-CGAACTCGAACTCAACTCAACGAGTTCGGATATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACAAGTTCGGATATTCGCAT
* *
38173060 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGCGAACTCGGACTCAACTCAACAAGTTCGGAT
38173098 GCCCAAATAT
Statistics
Matches: 104, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 2 0.02
46 61 0.59
47 25 0.24
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACAAGTTCGGATATTCGCAT
Found at i:38175348 original size:14 final size:15
Alignment explanation
Indices: 38175329--38175363 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
38175319 TAAAGATAAC
38175329 AAGAAAACC-GAATA
1 AAGAAAACCAGAATA
*
38175343 AAGAAATCCAGAATA
1 AAGAAAACCAGAATA
38175358 AAGAAA
1 AAGAAA
38175364 CCCAAGATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.66, C:0.11, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAAACCAGAATA
Found at i:38178162 original size:31 final size:31
Alignment explanation
Indices: 38178119--38178182 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
38178109 CCTTTTCATA
38178119 TTTCATAATTCATAACACTGGGCCAAAGCCT
1 TTTCATAATTCATAACACTGGGCCAAAGCCT
* ** *
38178150 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCAAAGCCT
38178181 TT
1 TT
38178183 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCAAAGCCT
Found at i:38178422 original size:24 final size:25
Alignment explanation
Indices: 38178395--38178543 Score: 245
Period size: 24 Copynumber: 6.1 Consensus size: 25
38178385 GCCTAGCCTC
38178395 TTTTAATAACTGGGGCA-AAGCCCTT
1 TTTTAATAACTGGGGCATAAGCCC-T
38178420 TTTTAATAACTGGGGCATAAG-CCT
1 TTTTAATAACTGGGGCATAAGCCCT
38178444 TTTTAATAACTGGGGCATAAG-CCT
1 TTTTAATAACTGGGGCATAAGCCCT
38178468 TTTTAATAACTGGGGCATAAGCCC-
1 TTTTAATAACTGGGGCATAAGCCCT
38178492 TTTTAATAACTGGGGCATAAGCCC-
1 TTTTAATAACTGGGGCATAAGCCCT
*
38178516 TTTTAATAACTGGGGCATAGGCCCT
1 TTTTAATAACTGGGGCATAAGCCCT
38178541 TTT
1 TTT
38178544 GCACTTCCTC
Statistics
Matches: 120, Mismatches: 1, Indels: 6
0.94 0.01 0.05
Matches are distributed among these distances:
24 93 0.77
25 24 0.20
26 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAACTGGGGCATAAGCCCT
Found at i:38178475 original size:48 final size:48
Alignment explanation
Indices: 38178375--38178543 Score: 252
Period size: 48 Copynumber: 3.5 Consensus size: 48
38178365 GCTTTATCAT
*
38178375 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAG-CC-TTTTTA
*
38178425 ATAACTGGGGCATAAGCCTTTTTAATAACTGGGGCATAAGCCTTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCTTTTTA
*
38178473 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCTTTTTA
*
38178521 ATAACTGGGGCATAGGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
38178544 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
48 74 0.66
49 23 0.21
50 15 0.13
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCTTTTTA
Found at i:38178509 original size:72 final size:72
Alignment explanation
Indices: 38178375--38178543 Score: 252
Period size: 72 Copynumber: 2.3 Consensus size: 72
38178365 GCTTTATCAT
*
38178375 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTTTAATAACTGGGGCATA
1 ATAACTGG-GGCATAAGCCT-TTTTAATAACTGGGGCAAAGCCC-TTTTTAATAACTGGGGCATA
*
38178439 AGCCTTTTTA
63 AGCCCTTTTA
38178449 ATAACTGGGGCATAAGCCTTTTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAG
1 ATAACTGGGGCATAAGCCTTTTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAG
38178513 CCCTTTTA
65 CCCTTTTA
* *
38178521 ATAACTGGGGCATAGGCCCTTTT
1 ATAACTGGGGCATAAGCCTTTTT
38178544 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
72 49 0.55
73 21 0.24
74 19 0.21
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCTTTTTAATAACTGGGGCAAAGCCCTTTTTAATAACTGGGGCATAAGC
CCTTTTA
Found at i:38178620 original size:20 final size:20
Alignment explanation
Indices: 38178597--38178659 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
38178587 GAACATCTCG
38178597 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
* *
38178617 TGTGCATATCATACATGTCG
1 TGTGCATATCATACATATCA
*
38178637 TGTGCAAATCATACATATCA
1 TGTGCATATCATACATATCA
38178657 TGT
1 TGT
38178660 TTATCAAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:38178724 original size:25 final size:25
Alignment explanation
Indices: 38178696--38178743 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
38178686 ATATATAAAC
* * *
38178696 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
38178721 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
38178744 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:38186276 original size:31 final size:30
Alignment explanation
Indices: 38186233--38186296 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 30
38186223 CCTTTTCATA
38186233 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAG-CT
* * *
38186264 TTTCATATTTCATAATATTGGGCCGAAGCT
1 TTTCATAATTCATAACACTGGGCCGAAGCT
38186294 TTT
1 TTT
38186297 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 5 0.17
31 25 0.83
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (30 bp):
TTTCATAATTCATAACACTGGGCCGAAGCT
Found at i:38186547 original size:23 final size:24
Alignment explanation
Indices: 38186489--38186649 Score: 223
Period size: 23 Copynumber: 7.0 Consensus size: 24
38186479 GCTTTATCAT
*
38186489 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
38186514 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
38186538 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
38186560 ATAACTGGGGCATAAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
38186583 ATAACTGGGGCATAAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
38186606 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
38186628 ATAACTGGGGCAT-AGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
38186650 GCACTTCCTC
Statistics
Matches: 127, Mismatches: 1, Indels: 18
0.87 0.01 0.12
Matches are distributed among these distances:
22 36 0.28
23 59 0.46
24 24 0.19
25 8 0.06
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:38186603 original size:45 final size:47
Alignment explanation
Indices: 38186489--38186649 Score: 219
Period size: 45 Copynumber: 3.5 Consensus size: 47
38186479 GCTTTATCAT
*
38186489 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAG-CC-TTTTA
38186538 ATAACT-GGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCTTTTA
*
38186583 ATAACTGGGGCATAAG-CCTTTTAATAACT-GGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCTTTTA
38186628 ATAACTGGGGCAT-AGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
38186650 GCACTTCCTC
Statistics
Matches: 105, Mismatches: 2, Indels: 14
0.87 0.02 0.12
Matches are distributed among these distances:
44 2 0.02
45 47 0.45
46 37 0.35
47 8 0.08
48 5 0.05
49 6 0.06
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCTTTTA
Found at i:38186624 original size:68 final size:69
Alignment explanation
Indices: 38186489--38186649 Score: 256
Period size: 68 Copynumber: 2.3 Consensus size: 69
38186479 GCTTTATCAT
*
38186489 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTTAATAACTGGGCATAAGC
1 ATAACTGG-GGCATAGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTTAATAACTGGGCATAAGC
38186554 CCTTTA
64 CCTTTA
38186560 ATAACTGGGGCATAAG-CCTTTTAATAACTGGGGCATAAG-CC-TTTTAATAACTGGGCATAAGC
1 ATAACTGGGGCAT-AGCCCTTTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGCATAAGC
38186622 CCTTTA
64 CCTTTA
38186628 ATAACTGGGGCATAGCCCTTTT
1 ATAACTGGGGCATAGCCCTTTT
38186650 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 1, Indels: 9
0.90 0.01 0.09
Matches are distributed among these distances:
67 2 0.02
68 46 0.53
69 20 0.23
70 8 0.09
71 10 0.12
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (69 bp):
ATAACTGGGGCATAGCCCTTTTAATAACTGGGGCAAAGCCCTTTTTAATAACTGGGCATAAGCCC
TTTA
Found at i:38186726 original size:20 final size:20
Alignment explanation
Indices: 38186703--38186765 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
38186693 GAACATCTCG
38186703 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
* *
38186723 TGTGCATATCATACATGTCG
1 TGTGCATATCATACATATCA
38186743 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
38186763 TGT
1 TGT
38186766 TTATCAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:38194269 original size:39 final size:41
Alignment explanation
Indices: 38194192--38194298 Score: 123
Period size: 40 Copynumber: 2.7 Consensus size: 41
38194182 TAGCTCCTCG
* * *
38194192 TTCAAGTGCCTTCGGGACATAGCCC-GATTATATTAACT-CA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATATAAACTCCA
*
38194232 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCA
1 TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTC-CA
*
38194273 -TGAATGCCTTCGGGACTTAACCCGGA
1 TTCAATGCCTTCGGGACTTAACCCGGA
38194299 ATTAGTATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
39 21 0.36
40 36 0.61
41 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (41 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCCA
Found at i:38194287 original size:40 final size:39
Alignment explanation
Indices: 38194235--38194365 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
38194225 TAACTCATTC
* **
38194235 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCATG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* **
38194275 AATGCCTTCGGGACTTAACCCGGAATTAGTATTTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
*
38194315 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
*
38194355 AATACCTTCGG
1 AATGCCTTCGG
38194366 ATCTTAGTCC
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:38194337 original size:80 final size:80
Alignment explanation
Indices: 38194238--38194418 Score: 217
Period size: 80 Copynumber: 2.3 Consensus size: 80
38194228 CTCATTCAAT
* ** *
38194238 GCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCATGAATGCCTTCGGGA-CTTAACCCGGA-A
1 GCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA
* *
38194300 TTAGT-ATTTCGCACAAA
64 -TAGTCACTTAGCACAAA
**
38194317 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATAT
1 -GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATACCTTCGGATCTTAACCCGGATAT
38194382 AGTCACTTAGCACAAA
65 AGTCACTTAGCACAAA
*
38194398 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
38194419 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 11 0.12
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:38194378 original size:40 final size:40
Alignment explanation
Indices: 38194239--38194418 Score: 154
Period size: 40 Copynumber: 4.5 Consensus size: 40
38194229 TCATTCAATG
* * *
38194239 CCTTCGGGACTTAACCCGGATTTTAA-AACTCGCATGAATG-
1 CCTTCGGGACTTAACCCGGA-ATTAATAACTCGCA-CAAAGA
* ** *
38194279 CCTTCGGGACTTAACCCGGAATTAGTATTTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAGA
*
38194319 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATA
1 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAGA
** * * *
38194359 CCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAAG-
1 CCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACAAAGA
*
38194399 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
38194419 CAGCATTCAA
Statistics
Matches: 115, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
39 11 0.10
40 93 0.81
41 11 0.10
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAGA
Found at i:38208031 original size:27 final size:28
Alignment explanation
Indices: 38208001--38208133 Score: 170
Period size: 27 Copynumber: 5.0 Consensus size: 28
38207991 GTATTTTAGT
*
38208001 TATTTCGATAATTTTACAAATC-GGGGG
1 TATTTCGGTAATTTTACAAATCTGGGGG
** * *
38208028 TATTTCTATAATTTTAC-AATCTAGTGG
1 TATTTCGGTAATTTTACAAATCTGGGGG
*
38208055 TATTTCGGTAATTTTA-AAA-CTGGAGG
1 TATTTCGGTAATTTTACAAATCTGGGGG
38208081 TATTTCGGTAATTTTACAAA-CTGGGGG
1 TATTTCGGTAATTTTACAAATCTGGGGG
38208108 TATTTCGGTAATTTTACAAATC-GGGG
1 TATTTCGGTAATTTTACAAATCTGGGG
38208134 CTTTAATAAC
Statistics
Matches: 94, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
26 25 0.27
27 68 0.72
28 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (28 bp):
TATTTCGGTAATTTTACAAATCTGGGGG
Found at i:38208095 original size:53 final size:54
Alignment explanation
Indices: 38208001--38208131 Score: 176
Period size: 53 Copynumber: 2.4 Consensus size: 54
38207991 GTATTTTAGT
* * * * *
38208001 TATTTCGATAATTTTACAAATCGGGGGTATTTCTATAATTTTACAATCTAGTGG
1 TATTTCGGTAATTTTACAAATCGGAGGTATTTCGATAATTTTACAAACTAGGGG
* *
38208055 TATTTCGGTAATTTTA-AAA-CTGGAGGTATTTCGGTAATTTTACAAACTGGGGG
1 TATTTCGGTAATTTTACAAATC-GGAGGTATTTCGATAATTTTACAAACTAGGGG
38208108 TATTTCGGTAATTTTACAAATCGG
1 TATTTCGGTAATTTTACAAATCGG
38208132 GGCTTTAATA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
52 1 0.01
53 45 0.67
54 20 0.30
55 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (54 bp):
TATTTCGGTAATTTTACAAATCGGAGGTATTTCGATAATTTTACAAACTAGGGG
Found at i:38208480 original size:17 final size:17
Alignment explanation
Indices: 38208458--38208491 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
38208448 TTACCCACGC
38208458 GGGCCCAT-GGACCCATT
1 GGGCCCATCGG-CCCATT
38208475 GGGCCCATCGGCCCATT
1 GGGCCCATCGGCCCATT
38208492 TAACCCAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.15, C:0.38, G:0.29, T:0.18
Consensus pattern (17 bp):
GGGCCCATCGGCCCATT
Found at i:38214258 original size:27 final size:27
Alignment explanation
Indices: 38214227--38214279 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
38214217 GTAGGCCCTT
* *
38214227 AAAATTAAGCATATAATCAATAAAATA
1 AAAATAAAGCACATAATCAATAAAATA
*
38214254 AAAATAAAGCACGTAATCAATAAAAT
1 AAAATAAAGCACATAATCAATAAAAT
38214280 TTTCTTATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.62, C:0.09, G:0.06, T:0.23
Consensus pattern (27 bp):
AAAATAAAGCACATAATCAATAAAATA
Found at i:38221662 original size:45 final size:44
Alignment explanation
Indices: 38221572--38221702 Score: 174
Period size: 45 Copynumber: 3.0 Consensus size: 44
38221562 CCAAATTTAT
* * *
38221572 TCACCGGCATT-TTGCCTGCTAGGCTCGAGGCCCGAAAAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
* *
38221615 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATGTC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAGGCCCGAATAATATC
* *
38221660 TCACCAGCATTATAGCTTGCTAGGCTCCAAGGCCCGAATAATA
1 TCACCGGCATTATAGCCTGCTAGGCT-CAAGGCCCGAATAATA
38221703 CTGTACAACA
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
43 10 0.13
44 14 0.18
45 51 0.67
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
Found at i:38227679 original size:19 final size:22
Alignment explanation
Indices: 38227638--38227679 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 22
38227628 ATACATGCCA
*
38227638 TACCAACAACAAAATATAGTAG
1 TACCAACAACAAAATAGAGTAG
38227660 TACCAA-AA-AAAATAGA-TAG
1 TACCAACAACAAAATAGAGTAG
38227679 T
1 T
38227680 GTGACGAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
21 2 0.11
22 6 0.32
ACGTcount: A:0.57, C:0.14, G:0.10, T:0.19
Consensus pattern (22 bp):
TACCAACAACAAAATAGAGTAG
Found at i:38228336 original size:45 final size:45
Alignment explanation
Indices: 38228208--38228338 Score: 142
Period size: 45 Copynumber: 3.0 Consensus size: 45
38228198 CCAAATTTAT
* * * * *
38228208 TCACCGGCATT-TTGCCTGTTAGGCTC-GAGGCCCGAAAAATATC
1 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
** ** *
38228251 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCTAAATAATGTC
1 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
38228296 TCACCAGCATTATAGCCTGCTAGGCTCCAAA-GCCCGAATAATA
1 TCACCAGCATTATAGCCTGCTAGGCT-CAAAGGCCCGAATAATA
38228339 CTGTACAACA
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
43 10 0.14
44 13 0.18
45 45 0.62
46 4 0.06
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (45 bp):
TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:38229017 original size:19 final size:19
Alignment explanation
Indices: 38228981--38229019 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
38228971 TTTTCATCAT
* *
38228981 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
38229000 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
38229019 A
1 A
38229020 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:38229566 original size:28 final size:27
Alignment explanation
Indices: 38229480--38229569 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
38229470 GTGACAGAGT
*
38229480 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* ** *
38229509 CACCATAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
38229536 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
38229564 CACCAG
1 CACCAG
38229570 GATGCTTCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 22 0.44
29 6 0.12
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:38236872 original size:19 final size:19
Alignment explanation
Indices: 38236836--38236874 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
38236826 TTTTCATCAT
* *
38236836 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
38236855 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
38236874 A
1 A
38236875 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:38237377 original size:55 final size:55
Alignment explanation
Indices: 38237318--38237426 Score: 134
Period size: 55 Copynumber: 2.0 Consensus size: 55
38237308 GCTGCCAAAT
* *
38237318 ACAGA-AAATGTGACAGAGT-CACCAGATACAGATATTTTGTGGCAGT-GCCACCAGA
1 ACAGATAAACGTGACAG-GTCCACCAGA-ACAGATAATTTGTGGCA-TAGCCACCAGA
* *
38237373 ACAGATATACGTGGCAGGTCCACCAGAACAGATAATTTGTGGCATAGCCACCAG
1 ACAGATAAACGTGACAGGTCCACCAGAACAGATAATTTGTGGCATAGCCACCAG
38237427 GACGCTTCCT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
54 1 0.02
55 31 0.66
56 15 0.32
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (55 bp):
ACAGATAAACGTGACAGGTCCACCAGAACAGATAATTTGTGGCATAGCCACCAGA
Found at i:38237423 original size:28 final size:27
Alignment explanation
Indices: 38237337--38237426 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
38237327 GTGACAGAGT
*
38237337 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
38237366 CACCAGAACAGAT-ATACGTGGCAGGTC
1 CACCAGAACAGATAATTTGTGGCATG-C
38237393 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
38237421 CACCAG
1 CACCAG
38237427 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 21 0.41
28 21 0.41
29 8 0.16
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:38259253 original size:43 final size:44
Alignment explanation
Indices: 38259204--38259375 Score: 172
Period size: 43 Copynumber: 4.0 Consensus size: 44
38259194 GGTTATCGAG
*
38259204 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
* * * * *
38259248 -TGTGATTACGTGTAAGACCATGTTTGGAACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
* * * * * * *
38259290 ATATGATTTCGTGTAAGACCGTATTTGGGATAGTGGCATTG-AT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
* * *
38259333 ATGTGGTAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
38259376 GAGCCTTATG
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
42 9 0.08
43 97 0.92
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.35
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
Found at i:38260902 original size:109 final size:109
Alignment explanation
Indices: 38260706--38260936 Score: 363
Period size: 109 Copynumber: 2.1 Consensus size: 109
38260696 ATAGCCAAGG
* * * *
38260706 CACAGGGGCGTGTCTCTAGCCGTGTGGTACAAGTCAGAATGTATGCCTTGTTTTTACACGGTCTA
1 CACACGGGCGTGTCTCCAGCCGTGTGGTACAAGTCAGAATGTATGCCCTGTTTTCACACGGTCTA
* *
38260771 CAACATGGGCGTGTCTGGTGACCATGTGAGGCACACGACCTATT
66 CAACACGGGCATGTCTGGTGACCATGTGAGGCACACGACCTATT
* *
38260815 CACACGGGCGTGTCTCCAGCCGTGTGGTACAAGTTAGAATGTATGCCCTGTTTTCACACGGTCTG
1 CACACGGGCGTGTCTCCAGCCGTGTGGTACAAGTCAGAATGTATGCCCTGTTTTCACACGGTCTA
* *
38260880 CAACACGGGCATGTCTGGTGACCATGTGAGGCACACGGCCTGTT
66 CAACACGGGCATGTCTGGTGACCATGTGAGGCACACGACCTATT
*
38260924 CACATGGGCGTGT
1 CACACGGGCGTGT
38260937 GATCCCTAGA
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
109 111 1.00
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (109 bp):
CACACGGGCGTGTCTCCAGCCGTGTGGTACAAGTCAGAATGTATGCCCTGTTTTCACACGGTCTA
CAACACGGGCATGTCTGGTGACCATGTGAGGCACACGACCTATT
Found at i:38274300 original size:39 final size:39
Alignment explanation
Indices: 38274214--38274448 Score: 242
Period size: 39 Copynumber: 6.0 Consensus size: 39
38274204 CAAATCCAAT
* * * *
38274214 CACCACCAC-AAAGCATGCGGGGCTTTAAGCCCGAATATAA
1 CACCAGCACGAAAGCATTCGGGAC-TT-AGCCCGGATATAA
* * * *
38274254 TACCAGCAC-AAAGCCTACGGGACTTTAGCTCGGATATAA
1 CACCAGCACGAAAGCATTCGGGAC-TTAGCCCGGATATAA
* * * *
38274293 CACCAGCACGAATGCCTTCGGGGCTTGGCCCGGATATAA
1 CACCAGCACGAAAGCATTCGGGACTTAGCCCGGATATAA
* * *
38274332 CACCAGCACGGATGCATTCGGGGCTTAGCCCGGATATAA
1 CACCAGCACGAAAGCATTCGGGACTTAGCCCGGATATAA
* * *
38274371 CACGAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCATTCGGGACTTAGCCCGGATATAA
*
38274410 CACCAGCAC-AAATGCATTCTGGACTTAGCCCGGATATAA
1 CACCAGCACGAAA-GCATTCGGGACTTAGCCCGGATATAA
38274449 TTCTCCATTT
Statistics
Matches: 169, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
38 2 0.01
39 135 0.80
40 32 0.19
ACGTcount: A:0.30, C:0.29, G:0.23, T:0.18
Consensus pattern (39 bp):
CACCAGCACGAAAGCATTCGGGACTTAGCCCGGATATAA
Found at i:38274371 original size:78 final size:78
Alignment explanation
Indices: 38274241--38274448 Score: 292
Period size: 78 Copynumber: 2.7 Consensus size: 78
38274231 CGGGGCTTTA
* * * * *
38274241 AGCCCGAATATAATACCAGCACAAA-GCCTACGGGACTTTAGCTCGGATATAACACCAGCACGAA
1 AGCCCGGATATAACACCAGCACAAATGCATTCGGGAC-TTAGCCCGGATATAACACCAGCACGAA
*
38274305 TGCCTTCGGGGCTT
65 TGCCTTCGGGACTT
* ** * *
38274319 GGCCCGGATATAACACCAGCACGGATGCATTCGGGGCTTAGCCCGGATATAACACGAGCACGAAT
1 AGCCCGGATATAACACCAGCACAAATGCATTCGGGACTTAGCCCGGATATAACACCAGCACGAAT
38274384 GCCTTCGGGACTT
66 GCCTTCGGGACTT
*
38274397 AGCCCGGATATAACACCAGCACAAATGCATTCTGGACTTAGCCCGGATATAA
1 AGCCCGGATATAACACCAGCACAAATGCATTCGGGACTTAGCCCGGATATAA
38274449 TTCTCCATTT
Statistics
Matches: 113, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
78 105 0.93
79 8 0.07
ACGTcount: A:0.30, C:0.28, G:0.24, T:0.19
Consensus pattern (78 bp):
AGCCCGGATATAACACCAGCACAAATGCATTCGGGACTTAGCCCGGATATAACACCAGCACGAAT
GCCTTCGGGACTT
Found at i:38274447 original size:117 final size:119
Alignment explanation
Indices: 38274226--38274448 Score: 308
Period size: 117 Copynumber: 1.9 Consensus size: 119
38274216 CCACCACAAA
* *
38274226 GCATGCGGGGCTTTAAGCCCGAATATAATACCAGCACAAAGCCTACGGGACTTTAGCTCGGATAT
1 GCATGCGGGGCTTTAAGCCCGAATATAACACCAGCACAAAGCCTACGGGACTTTAGCCCGGATAT
* * * *
38274291 AACACCAGCACGAATGCCTTCGGGGCTTGGCCCGGATATAACACCAGCACGGAT
66 AACACCAGCACAAATGCATTCGGGACTTAGCCCGGATATAACACCAGCACGGAT
* * * * *
38274345 GCATTCGGGGC-TT-AGCCCGGATATAACACGAGCACGAATGCCTTCGGGAC-TTAGCCCGGATA
1 GCATGCGGGGCTTTAAGCCCGAATATAACACCAGCAC-AAAGCCTACGGGACTTTAGCCCGGATA
*
38274407 TAACACCAGCACAAATGCATTCTGGACTTAGCCCGGATATAA
65 TAACACCAGCACAAATGCATTCGGGACTTAGCCCGGATATAA
38274449 TTCTCCATTT
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
117 67 0.74
118 14 0.15
119 10 0.11
ACGTcount: A:0.29, C:0.27, G:0.25, T:0.19
Consensus pattern (119 bp):
GCATGCGGGGCTTTAAGCCCGAATATAACACCAGCACAAAGCCTACGGGACTTTAGCCCGGATAT
AACACCAGCACAAATGCATTCGGGACTTAGCCCGGATATAACACCAGCACGGAT
Found at i:38277682 original size:55 final size:55
Alignment explanation
Indices: 38277623--38277728 Score: 142
Period size: 55 Copynumber: 1.9 Consensus size: 55
38277613 AGAGTGCGAC
*
38277623 ACGCCCGTACCT-TGAAACCGTGGGCGAACCTATAAAATTAGCACAGGCGTGCGGT
1 ACGCCCGTACCTAT-AAACCGTGGGCGAACCTATAAAATTAACACAGGCGTGCGGT
* * * * *
38277678 ACGCCCGTGCCTATCACCCGTGGGCGAACCTGTCAAATTAACACAGGCGTG
1 ACGCCCGTACCTATAAACCGTGGGCGAACCTATAAAATTAACACAGGCGTG
38277729 GACCTATGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
55 43 0.98
56 1 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.18
Consensus pattern (55 bp):
ACGCCCGTACCTATAAACCGTGGGCGAACCTATAAAATTAACACAGGCGTGCGGT
Found at i:38280677 original size:39 final size:41
Alignment explanation
Indices: 38280552--38280737 Score: 206
Period size: 40 Copynumber: 4.6 Consensus size: 41
38280542 GCTACTCGTT
* * *
38280552 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* *
38280592 CAAATGCCTTCGGGACTTAACCC-GAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
*
38280632 CCAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* * * *
38280671 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATATAGTAAC-TCGCA
38280712 CAAA-GCCTTTCGGGACTTAGCCCGGA
1 CAAATGCC-TTCGGGACTTAGCCCGGA
38280738 CATCATTCGA
Statistics
Matches: 124, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 67 0.54
41 20 0.16
42 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
Found at i:38280720 original size:79 final size:81
Alignment explanation
Indices: 38280552--38280737 Score: 202
Period size: 79 Copynumber: 2.3 Consensus size: 81
38280542 GCTACTCGTT
* * *
38280552 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
38280616 AATTTAGTAACTCGCAC
65 AATATAGTAACTAGCAC
* **
38280633 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* * *
38280695 GATATGGTCACTTAGCA-
65 AATATAGTAAC-TAGCAC
38280712 CAAAGCCTTTCGGGACTTAGCCCGGA
1 CAAAGCC-TTCGGGACTTAGCCCGGA
38280738 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
78 3 0.03
79 51 0.58
80 20 0.23
81 14 0.16
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
ATATAGTAACTAGCAC
Found at i:38287650 original size:11 final size:11
Alignment explanation
Indices: 38287634--38287658 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
38287624 CTGAGGTTGA
38287634 AATATTATTTT
1 AATATTATTTT
38287645 AATATTATTTT
1 AATATTATTTT
38287656 AAT
1 AAT
38287659 TTTTTATAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
AATATTATTTT
Found at i:38294275 original size:16 final size:17
Alignment explanation
Indices: 38294256--38294294 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
38294246 CTTTATTCAC
38294256 TTAATAT-ATTATAATA
1 TTAATATAATTATAATA
38294272 TTAATATAATTATAATA
1 TTAATATAATTATAATA
38294289 -TAATAT
1 TTAATAT
38294295 TATTTACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAATATAATTATAATA
Found at i:38295675 original size:15 final size:15
Alignment explanation
Indices: 38295655--38295685 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
38295645 AAATATGAAA
38295655 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
38295670 GATATGTTTTGTATT
1 GATATGTTTTGGATT
38295685 G
1 G
38295686 GAATTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:38295739 original size:22 final size:22
Alignment explanation
Indices: 38295714--38295757 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
38295704 AGTAATTAGG
38295714 ACTAAATTGCAAAAATAATAAA
1 ACTAAATTGCAAAAATAATAAA
38295736 ACTAAATTGCAAAAATAATAAA
1 ACTAAATTGCAAAAATAATAAA
38295758 TTGAGGGACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.64, C:0.09, G:0.05, T:0.23
Consensus pattern (22 bp):
ACTAAATTGCAAAAATAATAAA
Found at i:38296372 original size:45 final size:41
Alignment explanation
Indices: 38296294--38296403 Score: 114
Period size: 45 Copynumber: 2.6 Consensus size: 41
38296284 GATATGTGTT
* ** * * *
38296294 TTCGTGTAAAACCATGTCTGGGATGTTGGCATCGATGTATGTGG
1 TTCGTGTAAGACCATGTCTGGGACATCGACATC---GTATGTGA
*
38296338 TTACGTGTAAGACCATGTCTGGGACATCGACATCGTATTTGA
1 TT-CGTGTAAGACCATGTCTGGGACATCGACATCGTATGTGA
38296380 TTCGTGTAAGACC-TGTCTGGGACA
1 TTCGTGTAAGACCATGTCTGGGACA
38296404 GTGGCATCGA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
40 11 0.19
41 11 0.19
42 8 0.14
44 2 0.03
45 26 0.45
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (41 bp):
TTCGTGTAAGACCATGTCTGGGACATCGACATCGTATGTGA
Found at i:38302630 original size:37 final size:39
Alignment explanation
Indices: 38302572--38302652 Score: 91
Period size: 37 Copynumber: 2.2 Consensus size: 39
38302562 ATACATATGC
*
38302572 TATTA-TATTATTTTACATTTTAACA-ATATA-TTATTTCA
1 TATTATTATTATTTTACATTTT-ACATATATACAT-TTTCA
*
38302610 TATTATTATTA-TTTA-TTTTTACATATATACATTTTCA
1 TATTATTATTATTTTACATTTTACATATATACATTTTCA
38302647 TATTAT
1 TATTAT
38302653 AAATTATAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
36 3 0.08
37 20 0.53
38 10 0.26
39 5 0.13
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (39 bp):
TATTATTATTATTTTACATTTTACATATATACATTTTCA
Found at i:38302901 original size:14 final size:15
Alignment explanation
Indices: 38302871--38302904 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
38302861 TATTCTAAAC
38302871 TTATACTTATATATA
1 TTATACTTATATATA
*
38302886 TTATAGTTAT-TATA
1 TTATACTTATATATA
38302900 TTATA
1 TTATA
38302905 AATATAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (15 bp):
TTATACTTATATATA
Found at i:38302987 original size:17 final size:16
Alignment explanation
Indices: 38302954--38303003 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
38302944 ATATATTTTA
38302954 TATTTTATATAATTAT
1 TATTTTATATAATTAT
38302970 TATTCTTATA-AATATAT
1 TATT-TTATATAAT-TAT
*
38302987 T-TTTTAT-TATTTAT
1 TATTTTATATAATTAT
38303001 TAT
1 TAT
38303004 ATTTTTAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
14 4 0.14
15 7 0.24
16 9 0.31
17 9 0.31
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TATTTTATATAATTAT
Found at i:38315201 original size:205 final size:205
Alignment explanation
Indices: 38314842--38315419 Score: 924
Period size: 205 Copynumber: 2.8 Consensus size: 205
38314832 ATAGGCCGCA
* *
38314842 ACATAGTAGATCTCACCTTCAGATGTTTATACTGAAGAAGATCCAATATGATTTGGCATCCTTGT
1 ACATAGCAGATCTCACCTTCAGATGTTTATACTGAAGAAGATCCAAGATGATTTGGCATCCTTGT
38314907 GCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
66 GCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
*
38314972 TAAGATGATTTGGCATTTCTGTATTGTCAGAGAACAAATCAAAGTCTAGCATCTCCACTTCGACG
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTCTAGCATCTCCACTTCGACG
38315037 GGGAGCAGAT
196 GGGAGCAGAT
* * * *
38315047 ACATAGCAGATCTCACCTTCAGATGTTTATACTGAAGGAGATCTAAGATGATTTGGTATCCTTTT
1 ACATAGCAGATCTCACCTTCAGATGTTTATACTGAAGAAGATCCAAGATGATTTGGCATCCTTGT
* * *
38315112 GCTTACAAGGAGGGAATCGAATACATAGCTGATTTGGCTTTCACGTGTTTACAATGAAGCAAATC
66 GCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* *
38315177 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACG
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTCTAGCATCTCCACTTCGACG
38315242 GGGAGCAGAT
196 GGGAGCAGAT
* * * * *
38315252 ACATAGCAGACCTCGCCTTCAGATAATTT-CACTGAAGTAAGATCCAAGATGATTTGGCATTCTT
1 ACATAGCAGATCTCACCTTCAGAT-GTTTATACTGAAG-AAGATCCAAGATGATTTGGCATCCTT
* * * * * *
38315316 GTGCTTACATGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTGATGATGAAGCAAA
64 GTGCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAA
38315381 TCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
129 TCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
38315420 TTTGAAGAAG
Statistics
Matches: 341, Mismatches: 30, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
205 222 0.65
206 119 0.35
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (205 bp):
ACATAGCAGATCTCACCTTCAGATGTTTATACTGAAGAAGATCCAAGATGATTTGGCATCCTTGT
GCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTCTAGCATCTCCACTTCGACG
GGGAGCAGAT
Found at i:38319293 original size:47 final size:47
Alignment explanation
Indices: 38319169--38319399 Score: 340
Period size: 47 Copynumber: 4.9 Consensus size: 47
38319159 TATACAAGTA
* * *
38319169 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAA-AGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
38319216 TATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
38319265 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
38319312 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
*
38319359 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
38319400 GAAGTGTATA
Statistics
Matches: 168, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
46 1 0.01
47 126 0.75
49 40 0.24
50 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:38319298 original size:22 final size:22
Alignment explanation
Indices: 38319271--38319392 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
38319261 CATGTGTATG
38319271 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
38319293 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
38319318 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
38319340 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
38319365 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
38319387 TGTGAT
1 TGTGAT
38319393 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:38319405 original size:47 final size:47
Alignment explanation
Indices: 38319164--38319420 Score: 329
Period size: 47 Copynumber: 5.4 Consensus size: 47
38319154 ATTGATATAC
* * * *
38319164 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGG
*
38319211 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGT-G
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGG
* * *
38319259 AACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT-G
1 AA-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGG
* * * *
38319306 AACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AA-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGG
*
38319354 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGG
* *
38319401 AAGTGTATAAATGTTATAAG
1 AAGTGTATATATGTGATAAG
38319421 TCCCGAAGGG
Statistics
Matches: 187, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
47 146 0.78
48 4 0.02
49 37 0.20
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGG
Found at i:38321909 original size:38 final size:38
Alignment explanation
Indices: 38321845--38321919 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
38321835 AATCCGAGTT
*
38321845 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
38321883 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
38321920 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:38322032 original size:40 final size:40
Alignment explanation
Indices: 38321973--38322173 Score: 278
Period size: 40 Copynumber: 5.0 Consensus size: 40
38321963 AGGTCTCGAC
38321973 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
38322012 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
38322052 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * *
38322092 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * *
38322132 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
38322172 GA
1 GA
38322174 CGTGTATTCG
Statistics
Matches: 142, Mismatches: 19, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 4 0.03
40 138 0.97
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:38324577 original size:47 final size:47
Alignment explanation
Indices: 38324525--38324870 Score: 482
Period size: 47 Copynumber: 7.3 Consensus size: 47
38324515 TGTACAAGTA
* * *
38324525 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAA-AGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
38324572 TATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
38324621 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
38324668 TGTATGTGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
38324715 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
38324762 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* * *
38324809 TATATATGTGATAAGACCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
38324856 TATAAATGTGATAAG
1 TATATATGTGATAAG
38324871 TCCCGAAGGG
Statistics
Matches: 277, Mismatches: 17, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 232 0.84
48 3 0.01
49 40 0.14
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:38327195 original size:14 final size:15
Alignment explanation
Indices: 38327165--38327198 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
38327155 TATTCTAAAC
38327165 TTATACTTATATATA
1 TTATACTTATATATA
*
38327180 TTATAGTTAT-TATA
1 TTATACTTATATATA
38327194 TTATA
1 TTATA
38327199 AATATAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (15 bp):
TTATACTTATATATA
Found at i:38327273 original size:25 final size:24
Alignment explanation
Indices: 38327218--38327274 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
38327208 TCTTTTACAC
*
38327218 ATTTGATA-TTTTATATACCAATAT
1 ATTTTATATTTTTATATA-CAATAT
38327242 ATTTTATATTTTTATATA-AATATT
1 ATTTTATATTTTTATATACAATA-T
38327266 ATTCTTATA
1 ATT-TTATA
38327275 AATATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 4 0.14
24 11 0.38
25 14 0.48
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (24 bp):
ATTTTATATTTTTATATACAATAT
Found at i:38327288 original size:15 final size:15
Alignment explanation
Indices: 38327246--38327288 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
38327236 CAATATATTT
38327246 TATATTTTTATATAAA
1 TATATTTTT-TATAAA
*
38327262 TAT-TATTCTTATAAA
1 TATAT-TTTTTATAAA
38327277 TATATTTTTTAT
1 TATATTTTTTAT
38327289 TATATATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
15 16 0.70
16 7 0.30
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (15 bp):
TATATTTTTTATAAA
Found at i:38332887 original size:24 final size:24
Alignment explanation
Indices: 38332850--38332899 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
38332840 GGGTCAACAT
38332850 TGGCACTAACTGTGCGGATTTGAA
1 TGGCACTAACTGTGCGGATTTGAA
** **
38332874 TGGCACTATGTGTGCTTATTTGAA
1 TGGCACTAACTGTGCGGATTTGAA
38332898 TG
1 TG
38332900 TCAATACATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.22, C:0.14, G:0.28, T:0.36
Consensus pattern (24 bp):
TGGCACTAACTGTGCGGATTTGAA
Found at i:38351760 original size:39 final size:40
Alignment explanation
Indices: 38351635--38351766 Score: 151
Period size: 40 Copynumber: 3.3 Consensus size: 40
38351625 GCTACTCGTT
* * **
38351635 CAAATGCCTTCGGGACATAGCCCTGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCC-GAAATTAGTAACTCGCA
* * *
38351675 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGAAATTAGTAACTCGCA
* * *
38351715 CCAATGCCTTCGGG-CTTAGCGCGAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGAAATTAGTAACTCGCA
38351754 CAAATGCCTTCGG
1 CAAATGCCTTCGG
38351767 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
39 34 0.44
40 44 0.56
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGAAATTAGTAACTCGCA
Found at i:38351803 original size:79 final size:80
Alignment explanation
Indices: 38351663--38351814 Score: 175
Period size: 79 Copynumber: 1.9 Consensus size: 80
38351653 AGCCCTGTTA
* * * * *
38351663 TAGTAACTCGCACAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCG-
1 TAGTAACTCGCACAAATGCCTTTCGGACTTAACCCGAATATAGTAACTAGCACCAAAGCCTTCGA
*
38351727 GGCTTAGCGCGAAAT
66 GACTTAGCGCGAAAT
** * *
38351742 TAGTAACTCGCACAAATGCC-TTCGGATCTTAGTCCGAATATGGTCACTTAGCA-CAAAGCCTTC
1 TAGTAACTCGCACAAATGCCTTTCGGA-CTTAACCCGAATATAGTAAC-TAGCACCAAAGCCTTC
38351805 GAGACTTAGC
64 GAGACTTAGC
38351815 CCGGACATCA
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
78 5 0.08
79 44 0.73
80 11 0.18
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTTCGGACTTAACCCGAATATAGTAACTAGCACCAAAGCCTTCGA
GACTTAGCGCGAAAT
Done.