Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 131 of 250
Found at i:42470692 original size:96 final size:94
Alignment explanation
Indices: 42470500--42471019 Score: 887
Period size: 96 Copynumber: 5.5 Consensus size: 94
42470490 CCCTTCGGGA
* * * * * * * *
42470500 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
42470565 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
42470594 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
42470659 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
42470690 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
42470755 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
42470784 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
42470849 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
42470880 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAAATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
42470945 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
42470976 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
42471020 CGCCATACTA
Statistics
Matches: 409, Mismatches: 13, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
94 128 0.31
96 281 0.69
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:42470769 original size:143 final size:143
Alignment explanation
Indices: 42470500--42471019 Score: 922
Period size: 143 Copynumber: 3.7 Consensus size: 143
42470490 CCCTTCGGGA
* * * * * * *
42470500 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
42470563 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
42470628 TCGGCTATTAGGC
131 TCGGCTATTAGGC
42470641 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
42470706 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
42470771 TCGGCTATTAGGC
131 TCGGCTATTAGGC
42470784 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
42470849 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
*
42470914 CATCGGCCATTAGGC
129 CATCGGCTATTAGGC
42470929 CTTATCACATA-A-ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
42470992 ACTTTCACATTCATCACATCGGCCATTA
66 ACTTTCACATTCATCACATCGGCCATTA
42471020 CGCCATACTA
Statistics
Matches: 367, Mismatches: 8, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
141 10 0.03
142 1 0.00
143 306 0.83
144 1 0.00
145 49 0.13
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCTATTAGGC
Found at i:42478610 original size:33 final size:33
Alignment explanation
Indices: 42478573--42478670 Score: 110
Period size: 34 Copynumber: 2.9 Consensus size: 33
42478563 CTATGGGCTA
* *
42478573 TACTGTTATCTGAAAAGGGGCTAAGGCCCAAT-T
1 TACTGTTATCTGAAAA-GGGCTTAGGCCCAATAC
*
42478606 TACTG-TATTCTGAAAAGGGCTTCGGCCCAATACC
1 TACTGTTA-TCTGAAAAGGGCTTAGGCCCAATA-C
* *
42478640 CACTGTTATCTGAATAGGGCTTAGGCCCAAT
1 TACTGTTATCTGAAAAGGGCTTAGGCCCAAT
42478671 GGGCTTGAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
32 15 0.27
33 13 0.24
34 25 0.45
35 2 0.04
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (33 bp):
TACTGTTATCTGAAAAGGGCTTAGGCCCAATAC
Found at i:42481196 original size:19 final size:19
Alignment explanation
Indices: 42481172--42481209 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
42481162 TTAGTTAATA
42481172 ATTTTAATGA-TATTTTATT
1 ATTTT-ATGATTATTTTATT
*
42481191 ATTTTATTATTATTTTATT
1 ATTTTATGATTATTTTATT
42481210 TAGTATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
ATTTTATGATTATTTTATT
Found at i:42483345 original size:46 final size:46
Alignment explanation
Indices: 42483293--42483700 Score: 477
Period size: 46 Copynumber: 8.9 Consensus size: 46
42483283 TTCTGAAATG
* *
42483293 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAGA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
* *
42483339 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
*
42483385 AAAT--G-AAGACCATGGTTGAAAGATACCATGGCAACATGATATG-
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GA
* **
42483428 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGACATG-
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GA
* * * *
42483474 AAATGAATAAGACCATGGCTAAAAGATACCATGGCAACGTGACA-A
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
* * *
42483519 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATAACAGGG
1 -AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GA
* * * *
42483567 AAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACGGGG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC-AGA
* * * *
42483614 AAATGAATAAGATCATGGTTAAAAGATACCATGGCAACATGATAGA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
* * * * *
42483660 AAACGAGTAAGACCATAGTCGAAAGATACTATGGCATCATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
42483701 TTGAAGATAA
Statistics
Matches: 319, Mismatches: 34, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
43 39 0.12
44 1 0.00
45 1 0.00
46 196 0.61
47 82 0.26
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.20
Consensus pattern (46 bp):
AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
Found at i:42483452 original size:89 final size:89
Alignment explanation
Indices: 42483301--42483700 Score: 453
Period size: 89 Copynumber: 4.4 Consensus size: 89
42483291 TGAAATGTGT
**
42483301 AAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATAG-AAATGAATAAGACCATGGTTGAAAGAT
*
42483366 ACCATGGCAACATGACATAAAATG-
65 ACCATGGCAACATGACAGAAAATGA
**
42483390 AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATA-GAAATGAATAAGACCATGGTTGAAAGAT
**
42483455 ACCATGGCAATGTGACATG-AAATGAA
65 ACCATGGCAACATGACA-GAAAATG-A
* * * *
42483481 TAAGACCATGGCTAAAAGATACCATGGCAACGTGACAAGAAATGAATAAGACCATGGTTGAAAGA
1 -AAGACCATGGTTGAAAGATACCATGGCAACATGA-TAGAAATGAATAAGACCATGGTTGAAAGA
* *
42483546 TACCATGGCAACATAACAGGGAAATGAA
64 TACCATGGCAACATGACA-GAAAATG-A
* ** * *
42483574 TAAGACCATGGTTGAAAGATACCATAGCAACATGACGGGGAAATGAATAAGATCATGGTTAAAAG
1 -AAGACCATGGTTGAAAGATACCATGGCAACATGA--TAGAAATGAATAAGACCATGGTTGAAAG
* *
42483639 ATACCATGGCAACATGATAGAAAACGA
63 ATACCATGGCAACATGACAGAAAATGA
* * * *
42483666 GTAAGACCATAGTCGAAAGATACTATGGCATCATG
1 --AAGACCATGGTTGAAAGATACCATGGCAACATG
42483701 TTGAAGATAA
Statistics
Matches: 271, Mismatches: 31, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
89 83 0.31
90 1 0.00
92 73 0.27
93 73 0.27
94 41 0.15
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.20
Consensus pattern (89 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAATGAATAAGACCATGGTTGAAAGATA
CCATGGCAACATGACAGAAAATGA
Found at i:42483825 original size:13 final size:13
Alignment explanation
Indices: 42483783--42483826 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
42483773 ACCTGATGAC
42483783 AAATGGTTATATG
1 AAATGGTTATATG
* **
42483796 AATTGGTTATACA
1 AAATGGTTATATG
*
42483809 AAATGGTTATGTG
1 AAATGGTTATATG
42483822 AAATG
1 AAATG
42483827 TTTACAGGAA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.39, C:0.02, G:0.23, T:0.36
Consensus pattern (13 bp):
AAATGGTTATATG
Found at i:42484815 original size:26 final size:26
Alignment explanation
Indices: 42484748--42484822 Score: 104
Period size: 22 Copynumber: 3.0 Consensus size: 26
42484738 TGAATTTTGA
*
42484748 AATACATTACAAGTATTAAAGATAAG
1 AATATATTACAAGTATTAAAGATAAG
*
42484774 AATATA-TA-AA-T-GTAAAGATAAG
1 AATATATTACAAGTATTAAAGATAAG
42484796 AATATATTACAAGTATTAAAGATAAG
1 AATATATTACAAGTATTAAAGATAAG
42484822 A
1 A
42484823 CCATGGTTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
22 16 0.38
23 3 0.07
24 4 0.10
25 3 0.07
26 16 0.38
ACGTcount: A:0.56, C:0.04, G:0.12, T:0.28
Consensus pattern (26 bp):
AATATATTACAAGTATTAAAGATAAG
Found at i:42484898 original size:24 final size:24
Alignment explanation
Indices: 42484870--42484944 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
42484860 TGAATAAGAC
42484870 CATGGTTGAAAGATACCATGGCAA
1 CATGGTTGAAAGATACCATGGCAA
** * *
42484894 CATGGCGGGAAA-ATGA--ATAAG-AC
1 CATGG-TTGAAAGAT-ACCAT-GGCAA
42484917 CATGGTTGAAAGATACCATGGCAA
1 CATGGTTGAAAGATACCATGGCAA
42484941 CATG
1 CATG
42484945 ACGGGCAAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 11 0.31
24 15 0.42
25 5 0.14
ACGTcount: A:0.39, C:0.16, G:0.27, T:0.19
Consensus pattern (24 bp):
CATGGTTGAAAGATACCATGGCAA
Found at i:42484926 original size:47 final size:47
Alignment explanation
Indices: 42484817--42485037 Score: 329
Period size: 47 Copynumber: 4.7 Consensus size: 47
42484807 AGTATTAAAG
* **
42484817 ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG-AAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGA
*
42484863 ATAAGACCATGGTTGAAAGATACCATGGCAACATGGCGGGAAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGA
*
42484910 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGCAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGA
* *
42484957 ATAAGACCATGGTTGAAACATACCATGGCAACATGAC-AGAAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGA
* * * *
42485003 GTAAGACCATAGTTGAAAGATACTATGGCATCATG
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATG
42485038 TTGAAGATAA
Statistics
Matches: 160, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 73 0.46
47 87 0.54
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.19
Consensus pattern (47 bp):
ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGA
Found at i:42484999 original size:93 final size:93
Alignment explanation
Indices: 42484817--42485037 Score: 336
Period size: 93 Copynumber: 2.4 Consensus size: 93
42484807 AGTATTAAAG
* * *
42484817 ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAG
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAC
* *
42484882 ATACCATGGCAACATGGCGGGAAAATGA
66 ATACCATGGCAACATGACGAGAAAATGA
*
42484910 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGCAAATGAATAAGACCATGGTTGAAA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGG-AAATGAATAAGACCATGGTTGAAA
42484975 CATACCATGGCAACATGAC-AGAAAATGA
65 CATACCATGGCAACATGACGAGAAAATGA
* * * *
42485003 GTAAGACCATAGTTGAAAGATACTATGGCATCATG
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATG
42485038 TTGAAGATAA
Statistics
Matches: 117, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
93 76 0.65
94 41 0.35
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.19
Consensus pattern (93 bp):
ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAC
ATACCATGGCAACATGACGAGAAAATGA
Found at i:42485160 original size:26 final size:24
Alignment explanation
Indices: 42485120--42485215 Score: 66
Period size: 26 Copynumber: 3.7 Consensus size: 24
42485110 ACCAGATGAC
*
42485120 AAATGGTTATATGAATTGGTTATACA
1 AAATGGTTATATGAAAT-GTT-TACA
* *
42485146 AAATGGTTGTGTGAAATGTTTACAA
1 AAATGGTTATATGAAATGTTTAC-A
* *
42485171 AAATTGGTCATATGGAAATATATGTACA
1 AAA-TGGTTATAT-GAAATGT-T-TACA
* *
42485199 AAATAGTTGTATGAAAT
1 AAATGGTTATATGAAAT
42485216 AATTAAGAAG
Statistics
Matches: 55, Mismatches: 10, Indels: 10
0.73 0.13 0.13
Matches are distributed among these distances:
24 3 0.05
25 7 0.13
26 25 0.45
27 12 0.22
28 5 0.09
29 3 0.05
ACGTcount: A:0.41, C:0.04, G:0.20, T:0.35
Consensus pattern (24 bp):
AAATGGTTATATGAAATGTTTACA
Found at i:42486025 original size:36 final size:36
Alignment explanation
Indices: 42485976--42486044 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
42485966 ATGTAAGTCA
42485976 GTATTGTGCCGAAAAGAGGGTGGTTCTGAGGACCCT
1 GTATTGTGCCGAAAAGAGGGTGGTTCTGAGGACCCT
*
42486012 GTATTGTGTCGAAAAGAGGGTGGTTCTGAGGAC
1 GTATTGTGCCGAAAAGAGGGTGGTTCTGAGGAC
42486045 TGAAGAGAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.13, G:0.38, T:0.26
Consensus pattern (36 bp):
GTATTGTGCCGAAAAGAGGGTGGTTCTGAGGACCCT
Found at i:42490617 original size:40 final size:40
Alignment explanation
Indices: 42490573--42490651 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
42490563 TTACAGTACC
*
42490573 ACTTGGTGTGTAGGGCTAGATGGGTCGATTTTATCCCCAT
1 ACTTGGTGTGTAGGGCTAGATAGGTCGATTTTATCCCCAT
* * *
42490613 ACTTGGTGTGTAGGGCTGGGTAGGTTGATTTTATCCCCA
1 ACTTGGTGTGTAGGGCTAGATAGGTCGATTTTATCCCCA
42490652 CATGGTGTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.16, C:0.16, G:0.32, T:0.35
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGCTAGATAGGTCGATTTTATCCCCAT
Found at i:42495926 original size:38 final size:39
Alignment explanation
Indices: 42495884--42496044 Score: 193
Period size: 39 Copynumber: 4.2 Consensus size: 39
42495874 ATTTTCAACA
* *
42495884 GGCTAACCCCCGTAGGCCTT-GTG-TGAGAT-TTATATCCG
1 GGCTAACCCCCGAAGGCATTCGTGCTG-G-TGTTATATCCG
**
42495922 GGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCG
1 GGCTAACCCCCGAAGGCATTCGTGCTGGTGTTATATCCG
**
42495961 GGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCG
1 GGCTAACCCCCGAAGGCATTCGTGCTGGTGTTATATCCG
* ** *
42496000 AGCTAAATCCCGAAGGCATTCGTACTGGTGTTATATCCG
1 GGCTAACCCCCGAAGGCATTCGTGCTGGTGTTATATCCG
42496039 GGCTAA
1 GGCTAA
42496045 GTCCCAAAGG
Statistics
Matches: 112, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
38 17 0.15
39 93 0.83
40 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (39 bp):
GGCTAACCCCCGAAGGCATTCGTGCTGGTGTTATATCCG
Found at i:42495957 original size:39 final size:39
Alignment explanation
Indices: 42495913--42496056 Score: 252
Period size: 39 Copynumber: 3.7 Consensus size: 39
42495903 TGTGTGAGAT
42495913 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
42495952 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
42495991 TTATATCCGAGCTAAATCCCGAAGGCATTCGTACTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
42496030 TTATATCCGGGCTAAGTCCCAAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCA
42496057 ATTATGTTGG
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 99 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:42503931 original size:39 final size:39
Alignment explanation
Indices: 42503884--42504027 Score: 252
Period size: 39 Copynumber: 3.7 Consensus size: 39
42503874 TGTATGAGAT
*
42503884 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
42503923 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
42503962 TTATATCCGAGCTAAATCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
42504001 TTATATCCGGGCTAAGTCTCGAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCA
42504028 ATTATGTTGG
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 99 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.28
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:42508463 original size:25 final size:25
Alignment explanation
Indices: 42508435--42508513 Score: 149
Period size: 25 Copynumber: 3.2 Consensus size: 25
42508425 AATTTGATAT
*
42508435 TTCAGCAGAGAAGGCATTGTTGAGA
1 TTCAGCAGATAAGGCATTGTTGAGA
42508460 TTCAGCAGATAAGGCATTGTTGAGA
1 TTCAGCAGATAAGGCATTGTTGAGA
42508485 TTCAGCAGATAAGGCATTGTTGAGA
1 TTCAGCAGATAAGGCATTGTTGAGA
42508510 TTCA
1 TTCA
42508514 CAAACTCAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.28
Consensus pattern (25 bp):
TTCAGCAGATAAGGCATTGTTGAGA
Found at i:42509093 original size:15 final size:16
Alignment explanation
Indices: 42509059--42509097 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
42509049 CATAAAATTG
42509059 AGATTAATTTATAGGA
1 AGATTAATTTATAGGA
42509075 AGATTAATTTATA-GA
1 AGATTAATTTATAGGA
42509090 AGA-TAATT
1 AGATTAATT
42509098 AAATTATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 5 0.22
15 5 0.22
16 13 0.57
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (16 bp):
AGATTAATTTATAGGA
Found at i:42509547 original size:16 final size:16
Alignment explanation
Indices: 42509526--42509565 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
42509516 TTGAATTACT
42509526 AATTACAGCTCTATTC
1 AATTACAGCTCTATTC
42509542 AATTACAGCTCTATTC
1 AATTACAGCTCTATTC
*
42509558 CATTACAG
1 AATTACAG
42509566 TAAACTAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.35
Consensus pattern (16 bp):
AATTACAGCTCTATTC
Found at i:42511349 original size:28 final size:28
Alignment explanation
Indices: 42511309--42511367 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
42511299 GTCATTATCA
42511309 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
42511337 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
42511365 ACC
1 ACC
42511368 TCATTAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:42516764 original size:27 final size:28
Alignment explanation
Indices: 42516726--42516787 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
42516716 GTCATTATCA
42516726 ACCCCATAAGTTAT-AAACTATTCCTAT
1 ACCCCATAAGTTATGAAACTATTCCTAT
* *
42516753 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATGAAACTATTCCTAT
42516781 ACCCCAT
1 ACCCCAT
42516788 TAATATGGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 14 0.44
28 18 0.56
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATGAAACTATTCCTAT
Found at i:42519261 original size:57 final size:57
Alignment explanation
Indices: 42519152--42519271 Score: 154
Period size: 57 Copynumber: 2.1 Consensus size: 57
42519142 AATAGAGGGA
* * *
42519152 ACCCAACTATGGTTATTTTTTTTTGGTCACCCAATTATGAAAAGTTACAAAATGGTC
1 ACCCAACTATGGTTATTTTTTTTTGATCACCCAACTATGAAAAGTTACAAAATGATC
* *
42519209 ACCCAACTATGGTTTTTTTCTCTTTTGATCACCCAACTATG-AAAG-TATAAAATGATC
1 ACCCAACTATGGTTATTTT-T-TTTTGATCACCCAACTATGAAAAGTTACAAAATGATC
*
42519266 ATCCAA
1 ACCCAA
42519272 GTATCCAATT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
57 33 0.60
58 5 0.09
59 17 0.31
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36
Consensus pattern (57 bp):
ACCCAACTATGGTTATTTTTTTTTGATCACCCAACTATGAAAAGTTACAAAATGATC
Found at i:42522756 original size:22 final size:22
Alignment explanation
Indices: 42522722--42522764 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
42522712 TAAGCTGCTT
*
42522722 AAAAAAATGGAAAAGGAAAAAAG
1 AAAAAAATAG-AAAGGAAAAAAG
*
42522745 AAAAAAA-AGAAAGTAAAAAA
1 AAAAAAATAGAAAGGAAAAAA
42522765 CCCACTTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 10 0.56
22 1 0.06
23 7 0.39
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAATAGAAAGGAAAAAAG
Found at i:42523962 original size:22 final size:22
Alignment explanation
Indices: 42523875--42523956 Score: 64
Period size: 22 Copynumber: 3.9 Consensus size: 22
42523865 AAGTTTTCAC
* *
42523875 ATTTATTTATAATTAATTTCT--
1 ATTTATTTAT-ATTTATTTATAA
* *
42523896 ATTTAATTATATTTA--AATAA
1 ATTTATTTATATTTATTTATAA
*
42523916 AATTATTTATATTTATTTATAA
1 ATTTATTTATATTTATTTATAA
* *
42523938 ATTTATTTTTTTTTATTTA
1 ATTTATTTATATTTATTTA
42523957 ATAATTATGC
Statistics
Matches: 47, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
18 1 0.02
20 17 0.36
21 9 0.19
22 20 0.43
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (22 bp):
ATTTATTTATATTTATTTATAA
Found at i:42526529 original size:27 final size:27
Alignment explanation
Indices: 42526491--42526542 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
42526481 ATAAGGGGTT
42526491 TAAAAAAGATGTGTTTGAAAAATTGCA
1 TAAAAAAGATGTGTTTGAAAAATTGCA
42526518 TAAAAAAGATGTGTTTGAAAAATTG
1 TAAAAAAGATGTGTTTGAAAAATTG
42526543 TATGGCTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.48, C:0.02, G:0.19, T:0.31
Consensus pattern (27 bp):
TAAAAAAGATGTGTTTGAAAAATTGCA
Found at i:42527545 original size:16 final size:13
Alignment explanation
Indices: 42527520--42527559 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
42527510 CTACATATAC
42527520 TTTTACAACAACA
1 TTTTACAACAACA
42527533 TTTTACAACAACA
1 TTTTACAACAACA
42527546 TTTTACAACAACA
1 TTTTACAACAACA
42527559 T
1 T
42527560 AAAAATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.33
Consensus pattern (13 bp):
TTTTACAACAACA
Found at i:42528311 original size:11 final size:11
Alignment explanation
Indices: 42528295--42528319 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
42528285 ACAAAAGAGG
42528295 GGAAAATGAAA
1 GGAAAATGAAA
42528306 GGAAAATGAAA
1 GGAAAATGAAA
42528317 GGA
1 GGA
42528320 GAACGAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.32, T:0.08
Consensus pattern (11 bp):
GGAAAATGAAA
Found at i:42530769 original size:67 final size:67
Alignment explanation
Indices: 42530685--42530815 Score: 210
Period size: 67 Copynumber: 2.0 Consensus size: 67
42530675 TTAATAATCA
* * *
42530685 ATTGAGTTTTTAATCAAAAGTTAGTAATTAATCGAACCTTTTAAATAT-AGTTTTTCGTCGAAGC
1 ATTGAGTTCTTAATCAAAAGTTAGTAATTAATCAAACCTTTTAAATATGA-TTTTCCGTCGAAGC
42530749 CCC
65 CCC
*
42530752 ATTGAGTTCTTAATCAAAAGTTAGTAATTAATCAAACTTTTTAAATATGATTTTCCGTCGAAGC
1 ATTGAGTTCTTAATCAAAAGTTAGTAATTAATCAAACCTTTTAAATATGATTTTCCGTCGAAGC
42530816 TCTTGATGGA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
67 58 0.98
68 1 0.02
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (67 bp):
ATTGAGTTCTTAATCAAAAGTTAGTAATTAATCAAACCTTTTAAATATGATTTTCCGTCGAAGCC
CC
Found at i:42530936 original size:31 final size:31
Alignment explanation
Indices: 42530862--42530939 Score: 111
Period size: 32 Copynumber: 2.5 Consensus size: 31
42530852 GAACATAAAA
* *
42530862 GCTTAATTGATTCTTTAAATTATTTTATGAG
1 GCTTAATTGATTTTTTAAATTATTTTAAGAG
*
42530893 GACTTAATTGATTTTTTTAATTATTTTAAGAG
1 G-CTTAATTGATTTTTTAAATTATTTTAAGAG
*
42530925 GCTTAAATGATTTTT
1 GCTTAATTGATTTTT
42530940 AAGGATTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
31 14 0.33
32 28 0.67
ACGTcount: A:0.29, C:0.05, G:0.13, T:0.53
Consensus pattern (31 bp):
GCTTAATTGATTTTTTAAATTATTTTAAGAG
Found at i:42531057 original size:30 final size:30
Alignment explanation
Indices: 42531023--42531087 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
42531013 TTTAATAATA
* *
42531023 TTTAATAACTTAT-ATAATATTTTATAACAT
1 TTTAATAACTTATAATAAT-TTTTAAAAAAT
* *
42531053 TTTAATAATTTCTAATAATTTTTAAAAAAT
1 TTTAATAACTTATAATAATTTTTAAAAAAT
42531083 TTTAA
1 TTTAA
42531088 ATAAAAAGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.51
Consensus pattern (30 bp):
TTTAATAACTTATAATAATTTTTAAAAAAT
Found at i:42531063 original size:19 final size:19
Alignment explanation
Indices: 42531012--42531087 Score: 66
Period size: 20 Copynumber: 3.8 Consensus size: 19
42531002 ATTTTAATTT
42531012 TTTTAATAATATTTAATAAC
1 TTTTAATAAT-TTTAATAAC
42531032 TTATATAAT-ATTTT-ATAAC
1 TT-T-TAATAATTTTAATAAC
*
42531051 ATTTTAATAATTTCTAATAAT
1 -TTTTAATAATTT-TAATAAC
*
42531072 TTTTAAAAAATTTTAA
1 TTTT-AATAATTTTAA
42531088 ATAAAAAGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
18 4 0.09
19 10 0.21
20 15 0.32
21 14 0.30
22 4 0.09
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (19 bp):
TTTTAATAATTTTAATAAC
Found at i:42531402 original size:17 final size:18
Alignment explanation
Indices: 42531365--42531405 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
42531355 TTTTTACAAA
42531365 TATATTTTTAATAAGTTTT
1 TATA-TTTTAATAAGTTTT
*
42531384 TATATTTTAATTA-TTTT
1 TATATTTTAATAAGTTTT
42531401 TATAT
1 TATAT
42531406 AGATTCTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.43
18 8 0.38
19 4 0.19
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (18 bp):
TATATTTTAATAAGTTTT
Found at i:42531406 original size:19 final size:20
Alignment explanation
Indices: 42531364--42531406 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
42531354 TTTTTTACAA
42531364 ATATATTTTTAATAAGTTTT
1 ATATATTTTTAATAAGTTTT
* *
42531384 -TATA-TTTTAATTATTTTT
1 ATATATTTTTAATAAGTTTT
42531402 ATATA
1 ATATA
42531407 GATTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
ATATATTTTTAATAAGTTTT
Found at i:42531453 original size:9 final size:9
Alignment explanation
Indices: 42531439--42531463 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
42531429 TCATTTAATA
42531439 TTTTCATAT
1 TTTTCATAT
42531448 TTTTCATAT
1 TTTTCATAT
42531457 TTTTCAT
1 TTTTCAT
42531464 GACATATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.12, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTCATAT
Found at i:42532310 original size:18 final size:18
Alignment explanation
Indices: 42532276--42532313 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
42532266 TTTTGAATTA
*
42532276 ATTTAAATATTTAAATAC
1 ATTTAAATAATTAAATAC
42532294 ATTTCAAATAATT-AATAC
1 ATTT-AAATAATTAAATAC
42532312 AT
1 AT
42532314 AGAAGGTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTTAAATAATTAAATAC
Found at i:42533633 original size:13 final size:13
Alignment explanation
Indices: 42533615--42533642 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
42533605 TAGAAAAAAT
42533615 TTTAAAATTTAAC
1 TTTAAAATTTAAC
42533628 TTTAAAATTTAAC
1 TTTAAAATTTAAC
42533641 TT
1 TT
42533643 ACTTTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (13 bp):
TTTAAAATTTAAC
Found at i:42535212 original size:33 final size:34
Alignment explanation
Indices: 42535166--42535231 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
42535156 ACAGTGCATG
* *
42535166 CAGTAACAGTCTGGGCC-TGAGCCCTATTCAGTAT
1 CAGTAACAATCTGGGCCAT-AGCCCTATACAGTAT
42535200 CAGT-ACAATCTGGGCCATAGCCCTATACAGTA
1 CAGTAACAATCTGGGCCATAGCCCTATACAGTA
42535232 ATAGTGTGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 24 0.83
34 5 0.17
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (34 bp):
CAGTAACAATCTGGGCCATAGCCCTATACAGTAT
Found at i:42535734 original size:27 final size:27
Alignment explanation
Indices: 42535617--42535734 Score: 146
Period size: 27 Copynumber: 4.4 Consensus size: 27
42535607 TGCATAATCA
** * *
42535617 TCATTTTACTATACAGGGATATTATGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
42535644 TCATTTTATCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
42535671 TCATTTTATCCTACAGGAGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
42535698 TCATTTTACCCTATAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
42535725 TCGTTTTACC
1 TCATTTTACC
42535735 TATTTTGAGG
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:42536944 original size:20 final size:21
Alignment explanation
Indices: 42536914--42536955 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
42536904 AATAGGGGGA
42536914 AAAAAGAAGAAAATGGAGAAC
1 AAAAAGAAGAAAATGGAGAAC
42536935 AAAAAG-AGAAAATGGAGAAC
1 AAAAAGAAGAAAATGGAGAAC
42536955 A
1 A
42536956 GAAGGGGAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.67, C:0.05, G:0.24, T:0.05
Consensus pattern (21 bp):
AAAAAGAAGAAAATGGAGAAC
Found at i:42538293 original size:16 final size:16
Alignment explanation
Indices: 42538264--42538333 Score: 113
Period size: 16 Copynumber: 4.4 Consensus size: 16
42538254 TTTGGTTCGC
*
42538264 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
* *
42538280 CGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
42538296 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
42538312 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
42538328 TGTAAT
1 TGTAAT
42538334 AGCAAATCAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.31, C:0.01, G:0.36, T:0.31
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:42538378 original size:45 final size:44
Alignment explanation
Indices: 42538312--42538402 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
42538302 GGATTAGAGG
* *
42538312 TGTAATGGATTAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
42538357 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
42538401 TG
1 TG
42538403 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 18 0.45
45 22 0.55
ACGTcount: A:0.31, C:0.05, G:0.29, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:42538582 original size:16 final size:17
Alignment explanation
Indices: 42538545--42538582 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
42538535 ATTTAATCAT
42538545 ATTTAAACATAATTATA
1 ATTTAAACATAATTATA
*
42538562 A-TTAAATAT-ATTATA
1 ATTTAAACATAATTATA
42538577 ATTTAA
1 ATTTAA
42538583 TAAAATTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 7 0.37
16 11 0.58
17 1 0.05
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTTAAACATAATTATA
Found at i:42538618 original size:22 final size:21
Alignment explanation
Indices: 42538528--42538814 Score: 92
Period size: 22 Copynumber: 14.0 Consensus size: 21
42538518 ATTATCAATA
* *
42538528 ATAA-ATAATTTAATCATATT
1 ATAATATAATTTAATAAAATT
* *
42538548 -TAAACATAATTATAATTAAA-T
1 AT-AATATAATT-TAATAAAATT
*
42538569 ATATTATAATTTAATAAAATT
1 ATAATATAATTTAATAAAATT
* * *
42538590 CTTATATGAATTTACTAAAATT
1 ATAATAT-AATTTAATAAAATT
**
42538612 ATAATAT-A--TAATAGTA-T
1 ATAATATAATTTAATAAAATT
*
42538629 AAAATATAATTTAAAATAATAATT
1 ATAATATAATTT--AATAA-AATT
42538653 ATTAAATATAATTTAATAAAA--
1 A-T-AATATAATTTAATAAAATT
42538674 A-AATATAATTTAATAAAATT
1 ATAATATAATTTAATAAAATT
* * *
42538694 CTTA-AT-A-TTAA-AATATT
1 ATAATATAATTTAATAAAATT
* * * *
42538711 CTTATATGAATTTACTAAAATC
1 ATAATAT-AATTTAATAAAATT
*
42538733 ATAATAT-ATAATACTATAAAA-T
1 ATAATATAAT-TTA--ATAAAATT
* ** **
42538755 ATAATCTAAAATAATTATTATT
1 ATAATATAATTTAA-TAAAATT
*
42538777 A-AATATAATTTAATATAA--
1 ATAATATAATTTAATAAAATT
42538795 AT-ATATAATTTAATAAAATT
1 ATAATATAATTTAATAAAATT
42538815 CTTAGTATTA
Statistics
Matches: 197, Mismatches: 38, Indels: 64
0.66 0.13 0.21
Matches are distributed among these distances:
17 16 0.08
18 45 0.23
19 2 0.01
20 21 0.11
21 38 0.19
22 49 0.25
23 9 0.05
24 7 0.04
26 10 0.05
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (21 bp):
ATAATATAATTTAATAAAATT
Found at i:42538652 original size:13 final size:12
Alignment explanation
Indices: 42538628--42538668 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
42538618 TATAATAGTA
42538628 TAAAATATAATT
1 TAAAATATAATT
42538640 TAAAATAATAATT
1 TAAAAT-ATAATT
*
42538653 ATTAAATATAATT
1 -TAAAATATAATT
42538666 TAA
1 TAA
42538669 TAAAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 8 0.32
13 12 0.48
14 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAAATATAATT
Found at i:42538677 original size:18 final size:18
Alignment explanation
Indices: 42538656--42538691 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
42538646 AATAATTATT
42538656 AAATATAATTTAATAAAA
1 AAATATAATTTAATAAAA
42538674 AAATATAATTTAATAAAA
1 AAATATAATTTAATAAAA
42538692 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATATAATTTAATAAAA
Found at i:42538802 original size:18 final size:17
Alignment explanation
Indices: 42538779--42538813 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
42538769 TTATTATTAA
42538779 ATATAATTTAATATAAAT
1 ATATAATTTAATA-AAAT
42538797 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
42538814 TCTTAGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:42538872 original size:61 final size:60
Alignment explanation
Indices: 42538583--42538874 Score: 192
Period size: 59 Copynumber: 4.8 Consensus size: 60
42538573 TATAATTTAA
* * *
42538583 TAAA-ATTCTTATATGAATTTACTAAAATTATAATATATAATAGTATAAAA-T-ATAAT-T
1 TAAATATTCTTATA-GAATTTACTAAAATCATAATATATAATACTATAAAATTCTTAATAT
** * * ** * * * *
42538640 TAAAATAATAATTATTA-AATATAATTTAATAAAAAAATATAAT-TTAATAAAATTCTTAATAT
1 T-AAAT-ATTCTTA-TAGAATTTACTAAAATCATAATATATAATACT-ATAAAATTCTTAATAT
* *
42538702 TAAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAA-T-ATAATCT
1 T-AAATATTCTTATA-GAATTTACTAAAATCATAATATATAATACTATAAAATTCTTAATAT
* * * * ** * *
42538762 AAAATAATTATTATTA-AATATAATTTAAT-ATAAATATATAAT-TTAATAAAATTCTTAGTAT
1 TAAAT-ATTCTTA-TAGAATTTACTAAAATCAT-AATATATAATACT-ATAAAATTCTTAATAT
42538823 TAAATATTCTTATACGAATTTACTAAAATCATAATATATAATACTATAAAAT
1 TAAATATTCTTATA-GAATTTACTAAAATCATAATATATAATACTATAAAAT
42538875 ATAATCTAAA
Statistics
Matches: 174, Mismatches: 40, Indels: 38
0.69 0.16 0.15
Matches are distributed among these distances:
57 1 0.01
58 7 0.04
59 56 0.32
60 26 0.15
61 48 0.28
62 35 0.20
63 1 0.01
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (60 bp):
TAAATATTCTTATAGAATTTACTAAAATCATAATATATAATACTATAAAATTCTTAATAT
Found at i:42538911 original size:121 final size:120
Alignment explanation
Indices: 42538583--42538890 Score: 528
Period size: 121 Copynumber: 2.6 Consensus size: 120
42538573 TATAATTTAA
* * *
42538583 TAAA-ATTCTTATATGAATTTACTAAAATTATAATATATAATAGTATAAAATATAATTTAAAATA
1 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAATA
*
42538647 ATAATTATTAAATATAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATAT
66 ATTATTATTAAATATAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATAT
42538702 TAAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAAT
1 T-AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAAT
* * *
42538767 AATTATTATTAAATATAATTTAATATAAATATATAATTTAATAAAATTCTTAGTAT
65 AATTATTATTAAATATAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATAT
*
42538823 TAAATATTCTTATACGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAATA
1 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAATA
42538888 ATT
66 ATT
42538891 GATTTTGTGG
Statistics
Matches: 179, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
119 1 0.01
120 69 0.39
121 109 0.61
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.41
Consensus pattern (120 bp):
TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAATA
ATTATTATTAAATATAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATAT
Found at i:42540390 original size:13 final size:13
Alignment explanation
Indices: 42540374--42540403 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
42540364 TAGACCAAGC
42540374 TTTTCAAAAGCAT
1 TTTTCAAAAGCAT
*
42540387 TTTTCATAAGCAT
1 TTTTCAAAAGCAT
42540400 TTTT
1 TTTT
42540404 TTGCAGCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.50
Consensus pattern (13 bp):
TTTTCAAAAGCAT
Found at i:42549746 original size:15 final size:15
Alignment explanation
Indices: 42549726--42549756 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
42549716 TTACTGCAAA
42549726 AAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAG
*
42549741 AAAAAAAAAAGAAAG
1 AAAAAAAAAAAAAAG
42549756 A
1 A
42549757 GTAAAGTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAG
Found at i:42549751 original size:11 final size:11
Alignment explanation
Indices: 42549723--42549754 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
42549713 TAGTTACTGC
42549723 AAAAAAA-AAA
1 AAAAAAAGAAA
42549733 AAAAAAAGAAA
1 AAAAAAAGAAA
42549744 AAAAAAAGAAA
1 AAAAAAAGAAA
42549755 GAGTAAAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:42550272 original size:17 final size:18
Alignment explanation
Indices: 42550239--42550273 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
42550229 ATAGAAGTTG
42550239 AAATAACTATAAATTTAA
1 AAATAACTATAAATTTAA
*
42550257 AAATAATTAT-AATTTAA
1 AAATAACTATAAATTTAA
42550274 TAGAAGTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (18 bp):
AAATAACTATAAATTTAA
Found at i:42550278 original size:44 final size:43
Alignment explanation
Indices: 42550228--42550313 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 43
42550218 AGTTAAACAG
* *
42550228 AATAGAAGTTGAAATAACTATAAATTTAAAAATAATTATAATTT
1 AATAGAAGTTGAAATAACTACAAA-TTAAAAATAATTAGAATTT
** * *
42550272 AATAGAAGTTGTGATAATTACACATTAAAAATAATTAGAATT
1 AATAGAAGTTGAAATAACTACAAATTAAAAATAATTAGAATT
42550314 AGAATTAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 17 0.47
44 19 0.53
ACGTcount: A:0.52, C:0.03, G:0.09, T:0.35
Consensus pattern (43 bp):
AATAGAAGTTGAAATAACTACAAATTAAAAATAATTAGAATTT
Found at i:42551599 original size:26 final size:27
Alignment explanation
Indices: 42551570--42551628 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
42551560 TTAGAATAGG
* *
42551570 TAATATA-GGCGAAAGTTTGAAATAAA
1 TAATATACGGCAAAAGTTTAAAATAAA
*
42551596 TAATATACGGTAAAAGTTTAAAATAAA
1 TAATATACGGCAAAAGTTTAAAATAAA
42551623 TAATAT
1 TAATAT
42551629 GTAAAATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.53, C:0.03, G:0.14, T:0.31
Consensus pattern (27 bp):
TAATATACGGCAAAAGTTTAAAATAAA
Found at i:42551851 original size:27 final size:23
Alignment explanation
Indices: 42551787--42551868 Score: 69
Period size: 27 Copynumber: 3.3 Consensus size: 23
42551777 TATATATAAT
42551787 TTTAAAATAAATAAT-AAAACAA
1 TTTAAAATAAATAATGAAAACAA
*
42551809 TTTAAAATGAAA-AATGCATAAAGCGAG
1 TTTAAAAT-AAATAATG-A-AAA-C-AA
*
42551836 TTTAAAATAAATAATGTAAAAGAA
1 TTTAAAATAAATAATG-AAAACAA
42551860 TTTTAAAAT
1 -TTTAAAAT
42551869 CTATATTACA
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
22 11 0.23
23 3 0.06
24 2 0.04
25 11 0.23
26 7 0.15
27 14 0.29
ACGTcount: A:0.59, C:0.04, G:0.09, T:0.29
Consensus pattern (23 bp):
TTTAAAATAAATAATGAAAACAA
Found at i:42552173 original size:17 final size:17
Alignment explanation
Indices: 42552151--42552188 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
42552141 TGAAATACAT
*
42552151 AATATACAATAACTTAA
1 AATATAAAATAACTTAA
*
42552168 AATATAAAATAATTTAA
1 AATATAAAATAACTTAA
42552185 AATA
1 AATA
42552189 AATATATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (17 bp):
AATATAAAATAACTTAA
Found at i:42552220 original size:21 final size:20
Alignment explanation
Indices: 42552167--42552220 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
42552157 CAATAACTTA
*
42552167 AAATATAAAATAATTTAAAAT
1 AAATAT-AAATAATTTAAAAG
*
42552188 AAATATATAATAATTTTTAAAG
1 AAATATA-AATAA-TTTAAAAG
*
42552210 AATTATAAATA
1 AAATATAAATA
42552221 TCTAAAAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 1 0.04
21 15 0.54
22 12 0.43
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (20 bp):
AAATATAAATAATTTAAAAG
Found at i:42553925 original size:45 final size:45
Alignment explanation
Indices: 42553876--42553971 Score: 115
Period size: 44 Copynumber: 2.2 Consensus size: 45
42553866 ACTTCAAAGG
* *
42553876 GATAAGACTTGGTAATTTCAACCTGCTCTACTGC-ATCTTCAGGGA
1 GATAAGACTTGGTAACTTCAACCTGCTCCACTGCAAT-TTCAGGGA
* * * *
42553921 GATAA-AGTTTGTGACTTCAATCTGCTCCACTGCAATTTCAGGGA
1 GATAAGACTTGGTAACTTCAACCTGCTCCACTGCAATTTCAGGGA
42553965 GATAAGA
1 GATAAGA
42553972 TTTGCCATGG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
44 35 0.81
45 8 0.19
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (45 bp):
GATAAGACTTGGTAACTTCAACCTGCTCCACTGCAATTTCAGGGA
Found at i:42554465 original size:44 final size:44
Alignment explanation
Indices: 42554329--42554466 Score: 109
Period size: 44 Copynumber: 3.1 Consensus size: 44
42554319 CCACTACAAT
* * * * *
42554329 TTCAGAGAGATAAGA-CTTGTAACTTTAACCTGCCCCACTGCAAC
1 TTCAGAGAGATAAGATC-TGTAACTTTAATCTACTCCTCTGTAAC
* * * * * ** *
42554373 TTCAGGGGGATAAGGTTTGCTATTCTTCGATCTATTCCAT-TGTAAC
1 TTCAGAGAGATAAGATCTG-TA-ACTTTAATCTACTCC-TCTGTAAC
42554419 TTCAGAGAGATAAGATCTGTAACTTTAATCTACTCCTCTGTAAC
1 TTCAGAGAGATAAGATCTGTAACTTTAATCTACTCCTCTGTAAC
42554463 TTCA
1 TTCA
42554467 AGGAGATGAG
Statistics
Matches: 68, Mismatches: 21, Indels: 10
0.69 0.21 0.10
Matches are distributed among these distances:
43 1 0.01
44 35 0.51
45 4 0.06
46 28 0.41
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (44 bp):
TTCAGAGAGATAAGATCTGTAACTTTAATCTACTCCTCTGTAAC
Found at i:42557912 original size:47 final size:47
Alignment explanation
Indices: 42557855--42558037 Score: 173
Period size: 47 Copynumber: 3.9 Consensus size: 47
42557845 CTAGGATGGT
**
42557855 TGAACA-TCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATG
1 TGAACAGTCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG
* ** * *
42557901 TGAA-ATGTCCGAACTCGTTGAGTTGAGTCAAAGTTC-GTGA--GATG
1 TGAACA-GTCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG
*
42557945 T-AACTAGGCATCCGAACTCATTGAGTTGAGTCCGAGTTTACTTATGGATG
1 TGAAC-A-G--TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG
* * *
42557995 CGAACA-CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TGAACAGTCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
42558038 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 16, Indels: 20
0.76 0.11 0.14
Matches are distributed among these distances:
43 2 0.02
44 5 0.05
45 3 0.03
46 40 0.36
47 51 0.46
48 2 0.02
50 5 0.05
51 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (47 bp):
TGAACAGTCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG
Found at i:42565186 original size:47 final size:47
Alignment explanation
Indices: 42565135--42565311 Score: 186
Period size: 47 Copynumber: 3.8 Consensus size: 47
42565125 TGGTTGAACA
* *
42565135 TCCGAACTCGTTGAGATGAGTCCGAGTTCACTTATGGATGTGAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
* * *
42565182 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA--A--CG
*
42565229 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
* * *
42565275 -CCCAAGCTCGTTTAGTGGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
42565312 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 19
0.78 0.09 0.14
Matches are distributed among these distances:
43 2 0.02
44 5 0.05
45 5 0.05
46 32 0.29
47 57 0.52
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
Found at i:42572717 original size:19 final size:20
Alignment explanation
Indices: 42572693--42572736 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
42572683 GGGTCCTTTC
* *
42572693 ATGAAATTTAATGCATATG-
1 ATGAAATGTAATGCAAATGA
42572712 ATGAAATGTAATGCAAATGA
1 ATGAAATGTAATGCAAATGA
42572732 ATGAA
1 ATGAA
42572737 TGCAAAAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.48, C:0.05, G:0.18, T:0.30
Consensus pattern (20 bp):
ATGAAATGTAATGCAAATGA
Found at i:42576578 original size:26 final size:27
Alignment explanation
Indices: 42576549--42576607 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
42576539 TTAGAATAGG
* *
42576549 TAATATA-GGCGAAAGTTTGAAATAAA
1 TAATATACGGCAAAAGTTTAAAATAAA
*
42576575 TAATATACGGTAAAAGTTTAAAATAAA
1 TAATATACGGCAAAAGTTTAAAATAAA
42576602 TAATAT
1 TAATAT
42576608 GTAAAATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.53, C:0.03, G:0.14, T:0.31
Consensus pattern (27 bp):
TAATATACGGCAAAAGTTTAAAATAAA
Found at i:42576841 original size:25 final size:25
Alignment explanation
Indices: 42576761--42576845 Score: 70
Period size: 27 Copynumber: 3.4 Consensus size: 25
42576751 TAATATATAT
* *
42576761 AATTTTAAAGTAAATAA--TAAAAC
1 AATTTTAAAATAAATAATGTAAAAG
*
42576784 AA-TTTAAAATGAAA-AATGCATAAAG
1 AATTTTAAAAT-AAATAATGTA-AAAG
* *
42576809 CGAGTTTAAAATAAATAATGTAAAAG
1 -AATTTTAAAATAAATAATGTAAAAG
42576835 AATTTTAAAAT
1 AATTTTAAAAT
42576846 CTATATTACA
Statistics
Matches: 48, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
22 9 0.19
23 5 0.10
24 1 0.02
25 12 0.25
26 8 0.17
27 13 0.27
ACGTcount: A:0.58, C:0.04, G:0.09, T:0.29
Consensus pattern (25 bp):
AATTTTAAAATAAATAATGTAAAAG
Found at i:42577151 original size:17 final size:17
Alignment explanation
Indices: 42577129--42577166 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
42577119 TGAAATACAT
*
42577129 AATATACAATAACTTAA
1 AATATAAAATAACTTAA
*
42577146 AATATAAAATAATTTAA
1 AATATAAAATAACTTAA
42577163 AATA
1 AATA
42577167 AATATATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (17 bp):
AATATAAAATAACTTAA
Found at i:42577171 original size:21 final size:22
Alignment explanation
Indices: 42577145--42577196 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
42577135 CAATAACTTA
*
42577145 AAATATAAAAT-AATTTAAAAT
1 AAATATAAAATAAATTTAAAAG
* *
42577166 AAATATATAATAAATTTTAAAG
1 AAATATAAAATAAATTTAAAAG
*
42577188 AATTATAAA
1 AAATATAAA
42577197 TATCTAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
AAATATAAAATAAATTTAAAAG
Found at i:42581490 original size:26 final size:26
Alignment explanation
Indices: 42581461--42581568 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
42581451 TGATACAAAT
42581461 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
42581487 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
42581513 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
42581539 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
42581565 TGAT
1 TGAT
42581569 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:42588559 original size:25 final size:26
Alignment explanation
Indices: 42588524--42588609 Score: 165
Period size: 26 Copynumber: 3.3 Consensus size: 26
42588514 TGATACAAAT
42588524 TAATGGGTTAGGTAAATGTTCCATGA
1 TAATGGGTTAGGTAAATGTTCCATGA
42588550 TAAT-GGTTAGGTAAATGTTCCATGA
1 TAATGGGTTAGGTAAATGTTCCATGA
42588575 TAATGGGTTAGGTAAATGTTCCATGA
1 TAATGGGTTAGGTAAATGTTCCATGA
42588601 TAATGGGTT
1 TAATGGGTT
42588610 CCATGATAAT
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
25 25 0.42
26 34 0.58
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TAATGGGTTAGGTAAATGTTCCATGA
Found at i:42588612 original size:15 final size:15
Alignment explanation
Indices: 42588592--42588621 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
42588582 TTAGGTAAAT
42588592 GTTCCATGATAATGG
1 GTTCCATGATAATGG
42588607 GTTCCATGATAATGG
1 GTTCCATGATAATGG
42588622 TTTAGGTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (15 bp):
GTTCCATGATAATGG
Found at i:42592970 original size:21 final size:20
Alignment explanation
Indices: 42592946--42592993 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
42592936 GATTTATTAA
42592946 TATATTTGTACGT-TATATATG
1 TATATTTGTAC-TATAT-TATG
**
42592967 TATATCGGTACTATATTATG
1 TATATTTGTACTATATTATG
42592987 TATATTT
1 TATATTT
42592994 CTTCTTTTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.29, C:0.06, G:0.12, T:0.52
Consensus pattern (20 bp):
TATATTTGTACTATATTATG
Found at i:42597480 original size:3 final size:3
Alignment explanation
Indices: 42597461--42597900 Score: 91
Period size: 3 Copynumber: 145.7 Consensus size: 3
42597451 TTATTTTCAA
* *
42597461 ATT ACTT ATT TTT ATT ATT ATT -TT ATGT -TGT -TT ATT ATT ACT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT AT-T AT-T ATT ATT ATT ATT ATT
*
42597506 AATT ATA ATT -TCT A-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 -ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
42597551 ATT ATA ATAT AGT AGTGT ATGT -TT ATTT ATAT ATAT ATGT A-T ATAT
1 ATT ATT AT-T ATT A-T-T AT-T ATT A-TT AT-T AT-T AT-T ATT AT-T
* * * ** *
42597597 AGT A-T ATT TTT AATT ACT -TT ATT -TT AAC ATT ATT ATT A-T GTT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
42597639 A-T ATTT ACTT -TT -TGT ATT -TC AAT ATT ATT ACT ATT ATT ATT ATT
1 ATT A-TT A-TT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
42597683 ATT ATT AAT ATT AGTGT A-T ATT ATT -TT ATT ATAT ATGT ATGT A-T
1 ATT ATT ATT ATT A-T-T ATT ATT ATT ATT ATT AT-T AT-T AT-T ATT
* * *
42597727 ATGT A-T ACAT ATT -TAT ATAT AGT ATT ATT -TT -TT ATT ACT -TT ATT
1 AT-T ATT A-TT ATT AT-T AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
42597771 -TT GA-T ATT TTT ATT A-T ATT A-T ATAT ACTT -TT -TGT ATT -TC AAT
1 ATT -ATT ATT ATT ATT ATT ATT ATT AT-T A-TT ATT AT-T ATT ATT ATT
* * * * *
42597813 ATT ATT ACT ATT ATC ATC A-T ATT ATT ATT ACCTT -TT -TT ACT ATCCA
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A--TT ATT ATT ATT AT--T
42597859 ATGT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
42597901 ATTTCCTTTT
Statistics
Matches: 330, Mismatches: 52, Indels: 110
0.67 0.11 0.22
Matches are distributed among these distances:
2 51 0.15
3 214 0.65
4 56 0.17
5 9 0.03
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:42597705 original size:25 final size:25
Alignment explanation
Indices: 42597676--42597728 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 25
42597666 TTACTATTAT
42597676 TATTATTATTATTA-ATAT-TAGTGTA
1 TATTATT-TTATTATATATGTA-TGTA
42597701 TATTATTTTATTATATATGTATGTA
1 TATTATTTTATTATATATGTATGTA
42597726 TAT
1 TAT
42597729 GTATACATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 6 0.23
25 18 0.69
26 2 0.08
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (25 bp):
TATTATTTTATTATATATGTATGTA
Found at i:42597799 original size:151 final size:153
Alignment explanation
Indices: 42597520--42597842 Score: 449
Period size: 151 Copynumber: 2.1 Consensus size: 153
42597510 ATAATTTCTA
* * * *
42597520 TATTATTATTATTATTATTATTATTATTATTATTATAATATAGTAGTGTATGTTTATTTATATAT
1 TATTATTATTATTATTAATATTATTATTATTATTATAATATAGTAGTGTATGTATATGTATACAT
* *
42597585 ATATGTATATATAGTATATTTTTAATTACTTTATTTTAACATTATTATTATGTTATATTTACTTT
66 ATATGTATATATAGTATATTTTTAATTACTTTATTTTAACATTATTATTATATTATATATACTTT
42597650 TTGTATTTCAATATTATTACTAT
131 TTGTATTTCAATATTATTACTAT
* *
42597673 TATTATTATTATTATTAATATTAGTGTA-TATTATTTTATTATA-TA-TGTATGTATATGTATAC
1 TATTATTATTATTATTAATATTA-T-TATTATTATTATAATATAGTAGTGTATGTATATGTATAC
* * * *
42597735 ATAT-T-TATATATAGTATTATTTTTTATTACTTTATTTTGATATTTTTATTATATTATATATAC
64 ATATATGTATATATAGTA-TATTTTTAATTACTTTATTTTAACATTATTATTATATTATATATAC
42597798 TTTTTGTATTTCAATATTATTACTAT
128 TTTTTGTATTTCAATATTATTACTAT
*
42597824 TATCATCATATTATTATTA
1 TATTAT--TATTATTATTA
42597843 CCTTTTTTAC
Statistics
Matches: 152, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
150 11 0.07
151 72 0.47
152 18 0.12
153 35 0.23
154 14 0.09
155 2 0.01
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.59
Consensus pattern (153 bp):
TATTATTATTATTATTAATATTATTATTATTATTATAATATAGTAGTGTATGTATATGTATACAT
ATATGTATATATAGTATATTTTTAATTACTTTATTTTAACATTATTATTATATTATATATACTTT
TTGTATTTCAATATTATTACTAT
Found at i:42598108 original size:3 final size:3
Alignment explanation
Indices: 42598100--42598195 Score: 81
Period size: 3 Copynumber: 32.3 Consensus size: 3
42598090 GTATTTACCG
* * *
42598100 TTA TTA TTA CTA TTA TTT TTA CTT- TTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
42598145 TTTA TTA TTA CTA TTA TTA TCA CTA TTA TTT TTA TT- TT- TTA TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
42598189 CTA TTA T
1 TTA TTA T
42598196 CATTTTAAAA
Statistics
Matches: 73, Mismatches: 16, Indels: 8
0.75 0.16 0.08
Matches are distributed among these distances:
2 6 0.08
3 62 0.85
4 5 0.07
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:42598294 original size:12 final size:12
Alignment explanation
Indices: 42598277--42598310 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
42598267 ATGTTTCTAT
*
42598277 TATACATGTATA
1 TATACATATATA
*
42598289 TATACATATATT
1 TATACATATATA
42598301 TATACATATA
1 TATACATATA
42598311 GTATTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (12 bp):
TATACATATATA
Found at i:42602880 original size:17 final size:19
Alignment explanation
Indices: 42602857--42602899 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 19
42602847 ATTATTATCA
42602857 TTATTATTTTATC-TTATT
1 TTATTATTTTATCGTTATT
42602875 TT-TTA--TTATCGTTATT
1 TTATTATTTTATCGTTATT
42602891 TTATTATTT
1 TTATTATTT
42602900 CTTTTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 7
0.75 0.00 0.25
Matches are distributed among these distances:
15 5 0.24
16 7 0.33
17 6 0.29
18 2 0.10
19 1 0.05
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (19 bp):
TTATTATTTTATCGTTATT
Found at i:42602897 original size:29 final size:29
Alignment explanation
Indices: 42602845--42602910 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
42602835 CTTTGCATAC
42602845 TTATTATTATCATTATTATTTTATCTTATT
1 TTATTATTATCATTATTATTTTAT-TTATT
* *
42602875 TT-TTATTATCGTTATT-TTATTATTTCTT
1 TTATTATTATCATTATTATT-TTATTTATT
42602903 TTATTATT
1 TTATTATT
42602911 TCCAGCACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 8 0.25
29 22 0.69
30 2 0.06
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.70
Consensus pattern (29 bp):
TTATTATTATCATTATTATTTTATTTATT
Found at i:42606377 original size:21 final size:21
Alignment explanation
Indices: 42606351--42606394 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
42606341 TGGTTTCGTG
*
42606351 AGTTAACTTGTCCCTTCGCAT
1 AGTTAACTTGTCCCTCCGCAT
42606372 AGTTAACTTGTCCCTCCGCAT
1 AGTTAACTTGTCCCTCCGCAT
42606393 AG
1 AG
42606395 GCATAAGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (21 bp):
AGTTAACTTGTCCCTCCGCAT
Found at i:42617373 original size:77 final size:76
Alignment explanation
Indices: 42617247--42617493 Score: 309
Period size: 77 Copynumber: 3.2 Consensus size: 76
42617237 TTGGTATCCT
* * *
42617247 GATATTTTTATTTCTGTTTTT-TAAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCGG
1 GATATTTTAATTTCTATTTTTCT-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* * *
42617311 GACACATGCCGA
65 GTCACAAGCTGA
** *
42617323 GATATTTTCAATTTCTATTTTTCTAAAAAATCAACTCATATTATGAGAGGTGAGTTGAGCCTTGG
1 GATATTTT-AATTTCTATTTTTCTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
*
42617388 GTCACACGCTGA
65 GTCACAAGCTGA
* * * *
42617400 GGTATCTTTAGTTCCTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
1 GATAT-TTTAATTTCTATTTTTCTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
42617464 GTCACAAGCTGA
65 GTCACAAGCTGA
*
42617476 GATATTTTTAGTTTCTAT
1 GATA-TTTTAATTTCTAT
42617494 CTACTCATAT
Statistics
Matches: 148, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
76 70 0.47
77 74 0.50
78 4 0.03
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (76 bp):
GATATTTTAATTTCTATTTTTCTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
TCACAAGCTGA
Found at i:42617456 original size:76 final size:75
Alignment explanation
Indices: 42617247--42617493 Score: 307
Period size: 76 Copynumber: 3.2 Consensus size: 75
42617237 TTGGTATCCT
* * *
42617247 GATATTTTTA-TTTCTGTTTTTTAAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCGG
1 GATA-TTTTAGTTTCT-ATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* * *
42617311 GACACATGCCGA
64 GTCACAAGCTGA
* ** *
42617323 GATATTTTCAATTTCTATTTTTCTAAAAAATCAACTCATATTATGAGAGGTGAGTTGAGCCTTGG
1 GATATTTT-AGTTTCTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
*
42617388 GTCACACGCTGA
64 GTCACAAGCTGA
* * *
42617400 GGTATCTTTAGTTCCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 GATAT-TTTAGTTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
42617465 TCACAAGCTGA
65 TCACAAGCTGA
42617476 GATATTTTTAGTTTCTAT
1 GATA-TTTTAGTTTCTAT
42617494 CTACTCATAT
Statistics
Matches: 147, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
75 4 0.03
76 72 0.49
77 68 0.46
78 3 0.02
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (75 bp):
GATATTTTAGTTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
CACAAGCTGA
Found at i:42619403 original size:3 final size:3
Alignment explanation
Indices: 42619384--42619472 Score: 62
Period size: 3 Copynumber: 29.7 Consensus size: 3
42619374 TTATTTTCAA
* *
42619384 ATT ACTT ATT TTT ATT ATT ATT -TT ATGT -TGT -TT ATT ATT ACT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT AT-T AT-T ATT ATT ATT ATT ATT
* *
42619429 AATT ATA ATT -TCT A-T ATT ATT AAT ATT ATT ATT ATT ATT ATT AT
1 -ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
42619473 ATAGTAGTGT
Statistics
Matches: 70, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
2 6 0.09
3 57 0.81
4 7 0.10
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:42619592 original size:132 final size:135
Alignment explanation
Indices: 42619436--42619747 Score: 339
Period size: 142 Copynumber: 2.3 Consensus size: 135
42619426 ATTAATTATA
* * * *
42619436 ATTTCTATATTATTAATATTATTATTATTATTATTA-TA-TAGTAGTGTATGT-T-TATTTATAT
1 ATTTCAATATTATTACTATTATTATTATTATTATTATTATTAGTA-TATATGTATGTATATATAT
* * * *
42619497 ATATATGTATATATAGTATT-TTTTTAATTACTTTATTTTAACATTATTATTATGTTATATTTAC
65 ACATATGTAAATATAGTATTATTTTTAATTACTTTATTTTAACATTATTATTATATTATATATAC
42619561 TTTTTG
130 TTTTTG
*
42619567 TATTTCAATATTATTACTATTATTATTATTATTAGTGCATATTATTTTTATTATATATGTATGTA
1 -ATTTCAATATTATTACTATTATTATTATTATTA-T---TATTA---TTAGTATATATGTATGTA
* * * * * *
42619632 TATGTATACATATTTAAATATAGTATTATTTTTTATTACTTTATTTTGATATTTTTATTATATTA
58 TATATATACATATGTAAATATAGTATTATTTTTAATTACTTTATTTTAACATTATTATTATATTA
*
42619697 TATATGCTTTTTG
123 TATATACTTTTTG
* *
42619710 ATTTCAATATTATTACTATTATCATCA-TATTATTATTA
1 ATTTCAATATTATTACTATTATTATTATTATTATTATTA
42619748 CCTTTTTTAC
Statistics
Matches: 150, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
132 31 0.21
133 1 0.01
136 2 0.01
137 7 0.05
140 7 0.05
141 10 0.07
142 49 0.33
143 43 0.29
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.58
Consensus pattern (135 bp):
ATTTCAATATTATTACTATTATTATTATTATTATTATTATTAGTATATATGTATGTATATATATA
CATATGTAAATATAGTATTATTTTTAATTACTTTATTTTAACATTATTATTATATTATATATACT
TTTTG
Found at i:42619632 original size:148 final size:142
Alignment explanation
Indices: 42619458--42619731 Score: 363
Period size: 143 Copynumber: 1.9 Consensus size: 142
42619448 TTAATATTAT
* * *
42619458 TATTATTATTATTATATAGTAGTGTATGTTTATTTATATATATATGTATATATAGTATT-TTTTT
1 TATTATTATTATTATATAGTAGTGTA----TATGTATACATAT-T-TAAATATAGTATTATTTTT
* *
42619522 AATTACTTTATTTTAACATTATTATTATGTTATATTTACTTTTTGTATTTCAATATTATTACTAT
60 AATTACTTTATTTTAACATTATTATTATATTATATATACTTTTTG-ATTTCAATATTATTACTAT
42619587 TATTATTATTATTAGTGCA
124 TATTATTATTATTAGTGCA
* *
42619606 TATTATTTTTATTATATATGTA-TGTATATGTATACATATTTAAATATAGTATTATTTTTTATTA
1 TATTATTATTATTATATA-GTAGTGTATATGTATACATATTTAAATATAGTATTATTTTTAATTA
* * * *
42619670 CTTTATTTTGATATTTTTATTATATTATATATGCTTTTTGATTTCAATATTATTACTATTAT
65 CTTTATTTTAACATTATTATTATATTATATATACTTTTTGATTTCAATATTATTACTATTAT
42619732 CATCATATTA
Statistics
Matches: 113, Mismatches: 11, Indels: 10
0.84 0.08 0.07
Matches are distributed among these distances:
142 34 0.30
143 44 0.39
144 11 0.10
148 21 0.19
149 3 0.03
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.59
Consensus pattern (142 bp):
TATTATTATTATTATATAGTAGTGTATATGTATACATATTTAAATATAGTATTATTTTTAATTAC
TTTATTTTAACATTATTATTATATTATATATACTTTTTGATTTCAATATTATTACTATTATTATT
ATTATTAGTGCA
Found at i:42619775 original size:3 final size:3
Alignment explanation
Indices: 42619767--42619793 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
42619757 CTATCCAATG
42619767 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
42619794 ATTTTCCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:42619974 original size:22 final size:22
Alignment explanation
Indices: 42619953--42620001 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
42619943 CTTAGATTAT
*
42619953 TTATTATTTGT-CTTATCGTTA
1 TTATTATTTGTACTTACCGTTA
* *
42619974 TTACTATTTGTATTTACCGTTA
1 TTATTATTTGTACTTACCGTTA
42619996 TTATTA
1 TTATTA
42620002 CTATTATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.22, C:0.10, G:0.08, T:0.59
Consensus pattern (22 bp):
TTATTATTTGTACTTACCGTTA
Found at i:42620001 original size:3 final size:3
Alignment explanation
Indices: 42619993--42620156 Score: 93
Period size: 3 Copynumber: 55.0 Consensus size: 3
42619983 GTATTTACCG
* * *
42619993 TTA TTA TTA CTA TTA TTT TTA CTT- TTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
42620038 TTA TTA CTA TTA TTA TCA CTA TTA TTT TTA TTT TTA TTA CTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** * * * ** * *
42620086 TT- TTA -AA ACA TTG TTA CTA TTA TTC TT- TTA CCA TTTA ATA CGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA -TTA
42620130 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
42620157 GTGTATGTTT
Statistics
Matches: 118, Mismatches: 36, Indels: 14
0.70 0.21 0.08
Matches are distributed among these distances:
2 7 0.06
3 106 0.90
4 5 0.04
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:42620008 original size:12 final size:12
Alignment explanation
Indices: 42619971--42620083 Score: 93
Period size: 12 Copynumber: 10.1 Consensus size: 12
42619961 TGTCTTATCG
42619971 TTATTACTATT-
1 TTATTACTATTA
**
42619982 TGTATTTACCGTTA
1 T-TA-TTACTATTA
42619996 TTATTACTATTA
1 TTATTACTATTA
*
42620008 TTTTTAC--TT-
1 TTATTACTATTA
42620017 TTATTACTATTA
1 TTATTACTATTA
42620029 TTA-T--TATTA
1 TTATTACTATTA
42620038 TTATTACTATTA
1 TTATTACTATTA
*
42620050 TTATCACTATTA
1 TTATTACTATTA
*
42620062 TT-TT--TATTT
1 TTATTACTATTA
42620071 TTATTACTATTA
1 TTATTACTATTA
42620083 T
1 T
42620084 CATTTTAAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 23
0.71 0.09 0.20
Matches are distributed among these distances:
9 20 0.25
10 5 0.06
11 5 0.06
12 41 0.51
13 8 0.10
14 1 0.01
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.62
Consensus pattern (12 bp):
TTATTACTATTA
Found at i:42620022 original size:21 final size:21
Alignment explanation
Indices: 42619993--42620083 Score: 103
Period size: 21 Copynumber: 4.3 Consensus size: 21
42619983 GTATTTACCG
*
42619993 TTATTATTACTATTATTTTTA
1 TTATTATTACTATTATTATTA
42620014 CTT-TTATTACTATTATTATTA
1 -TTATTATTACTATTATTATTA
*
42620035 TTATTATTACTATTATTATCA
1 TTATTATTACTATTATTATTA
* ** *
42620056 CTATTATTTTTATTTTTATTA
1 TTATTATTACTATTATTATTA
*
42620077 CTATTAT
1 TTATTAT
42620084 CATTTTAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
20 2 0.03
21 57 0.93
22 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.64
Consensus pattern (21 bp):
TTATTATTACTATTATTATTA
Found at i:42620199 original size:11 final size:11
Alignment explanation
Indices: 42620168--42620203 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
42620158 TGTATGTTTC
*
42620168 TATTATACATG
1 TATTATACATA
42620179 TATATATACATA
1 TAT-TATACATA
42620191 TATTATACATA
1 TATTATACATA
42620202 TA
1 TA
42620204 GTATTATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.44
Consensus pattern (11 bp):
TATTATACATA
Found at i:42624060 original size:31 final size:30
Alignment explanation
Indices: 42624025--42624083 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
42624015 GTCTAAGAGA
42624025 AAAAAAAAAGGGAGAAAGGAAGTTTTTTTTT
1 AAAAAAAAAGGGAGAAAGGAA-TTTTTTTTT
* * * *
42624056 AAAAACAAGGGGTGAAATGAATTTTTTT
1 AAAAAAAAAGGGAGAAAGGAATTTTTTT
42624084 AGAAAATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 7 0.29
31 17 0.71
ACGTcount: A:0.46, C:0.02, G:0.22, T:0.31
Consensus pattern (30 bp):
AAAAAAAAAGGGAGAAAGGAATTTTTTTTT
Found at i:42624773 original size:17 final size:19
Alignment explanation
Indices: 42624750--42624792 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 19
42624740 ATTATTATCA
42624750 TTATTATTTTATC-TTATT
1 TTATTATTTTATCGTTATT
42624768 TT-TTA--TTATCGTTATT
1 TTATTATTTTATCGTTATT
42624784 TTATTATTT
1 TTATTATTT
42624793 CTTTTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 7
0.75 0.00 0.25
Matches are distributed among these distances:
15 5 0.24
16 7 0.33
17 6 0.29
18 2 0.10
19 1 0.05
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (19 bp):
TTATTATTTTATCGTTATT
Found at i:42624790 original size:29 final size:29
Alignment explanation
Indices: 42624738--42624803 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
42624728 CTTTGCATAC
42624738 TTATTATTATCATTATTATTTTATCTTATT
1 TTATTATTATCATTATTATTTTAT-TTATT
* *
42624768 TT-TTATTATCGTTATT-TTATTATTTCTT
1 TTATTATTATCATTATTATT-TTATTTATT
42624796 TTATTATT
1 TTATTATT
42624804 TCCAGCACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 8 0.25
29 22 0.69
30 2 0.06
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.70
Consensus pattern (29 bp):
TTATTATTATCATTATTATTTTATTTATT
Found at i:42626687 original size:15 final size:15
Alignment explanation
Indices: 42626655--42626683 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
42626645 ATTTTCAGTG
42626655 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
42626670 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
42626684 ATTTTCGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:42627895 original size:43 final size:43
Alignment explanation
Indices: 42627848--42627948 Score: 116
Period size: 43 Copynumber: 2.3 Consensus size: 43
42627838 AGGATGTTGG
*
42627848 CATCGGTATGTGATTTCGAGTAAGACCATGTCTGGAACATTGC
1 CATCGGTATGTGATTTCGAGTAAGACCATGTCTGGAACAGTGC
* * *
42627891 CATC-GTAATTGTGA-TTCGTGTAAGACCCTGTCTGGAACAGTGG
1 CATCGGT-A-TGTGATTTCGAGTAAGACCATGTCTGGAACAGTGC
**
42627934 CATCGACATGTGATT
1 CATCGGTATGTGATT
42627949 ACATGTAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
42 7 0.15
43 36 0.75
44 5 0.10
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
CATCGGTATGTGATTTCGAGTAAGACCATGTCTGGAACAGTGC
Found at i:42627956 original size:43 final size:41
Alignment explanation
Indices: 42627845--42627968 Score: 115
Period size: 43 Copynumber: 2.9 Consensus size: 41
42627835 TCTAGGATGT
* *
42627845 TGGCATCGGTATGTGATTTCGA-GTAAGACCATGTCTGGAACAT
1 TGGCATC-GAATGTGA-TTC-ATGTAAGACCATGTCTGGAACAG
* * *
42627888 TGCCATCGTAATTGTGATTCGTGTAAGACCCTGTCTGGAACAG
1 TGGCATCG-AA-TGTGATTCATGTAAGACCATGTCTGGAACAG
* *
42627931 TGGCATCGACATGTGATTACATGTAAAACCACGTCTGG
1 TGGCATCGA-ATGTGATT-CATGTAAGACCATGTCTGG
42627969 GATGTTGGCA
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
42 9 0.14
43 52 0.79
44 5 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (41 bp):
TGGCATCGAATGTGATTCATGTAAGACCATGTCTGGAACAG
Found at i:42635132 original size:343 final size:343
Alignment explanation
Indices: 42634506--42635193 Score: 1340
Period size: 343 Copynumber: 2.0 Consensus size: 343
42634496 AGAAAAAACG
42634506 GCTAGACTTGAATCACCTGTCAATGAGCTAGTAACTAAGAACGAGGCTAAGGAATTCTTTAAGTT
1 GCTAGACTTGAATCACCTGTCAATGAGCTAGTAACTAAGAACGAGGCTAAGGAATTCTTTAAGTT
*
42634571 CTTCAAACATAGCAAGTATAGTGTTGTAGAATAGTTGCACAAACTTGCATATCAGTATTAGCATT
66 CTTCAAACATAGCAAGTATAGTGTTGTAGAATAGTTGCACAAACTCGCATATCAGTATTAGCATT
*
42634636 GCTCTTAAGCTCAAAGATACATCGTAACGTGTTGATGAAGGTGTTAAATGAAATTTATGTCACTG
131 GCTCTTAAGCTCAAAGATACATCGTAACGCGTTGATGAAGGTGTTAAATGAAATTTATGTCACTG
42634701 ATAATATCTCTGTAAACAAGCTAGATCATTTGGTTAACAATTTGAGTGCCAACAATTTCATCTTT
196 ATAATATCTCTGTAAACAAGCTAGATCATTTGGTTAACAATTTGAGTGCCAACAATTTCATCTTT
42634766 TTCAATGATGATGAAATACCTCCATAAGGCATGGGATCCACGAAGACTCTACACATCACTACCTA
261 TTCAATGATGATGAAATACCTCCATAAGGCATGGGATCCACGAAGACTCTACACATCACTACCTA
42634831 CTACAAAGGATATACATT
326 CTACAAAGGATATACATT
42634849 GCTAGACTTGAATCACCTGTCAATGAGCTAGTAACTAAGAACGAGGCTAAGGAATTCTTTAAGTT
1 GCTAGACTTGAATCACCTGTCAATGAGCTAGTAACTAAGAACGAGGCTAAGGAATTCTTTAAGTT
42634914 CTTCAAACATAGCAAGTATAGTGTTGTAGAATAGTTGCACAAACTCGCATATCAGTATTAGCATT
66 CTTCAAACATAGCAAGTATAGTGTTGTAGAATAGTTGCACAAACTCGCATATCAGTATTAGCATT
42634979 GCTCTTAAGCTCAAAGATACATCGTAACGCGTTGATGAAGGTGTTAAATGAAATTTATGTCACTG
131 GCTCTTAAGCTCAAAGATACATCGTAACGCGTTGATGAAGGTGTTAAATGAAATTTATGTCACTG
*
42635044 ATAATATCTCTGTAAACAAGCTAGATCATTTGGTTAACAATTTGAGTGCCAATAATTTCATCTTT
196 ATAATATCTCTGTAAACAAGCTAGATCATTTGGTTAACAATTTGAGTGCCAACAATTTCATCTTT
42635109 TTCAATGATGATGAAATACCTCCATAAGGCATGGGATCCACGAAGACTCTACACATCACTACCTA
261 TTCAATGATGATGAAATACCTCCATAAGGCATGGGATCCACGAAGACTCTACACATCACTACCTA
*
42635174 CTGCAAAGGATATACATT
326 CTACAAAGGATATACATT
42635192 GC
1 GC
42635194 CAGGAGTGTT
Statistics
Matches: 341, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
343 341 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (343 bp):
GCTAGACTTGAATCACCTGTCAATGAGCTAGTAACTAAGAACGAGGCTAAGGAATTCTTTAAGTT
CTTCAAACATAGCAAGTATAGTGTTGTAGAATAGTTGCACAAACTCGCATATCAGTATTAGCATT
GCTCTTAAGCTCAAAGATACATCGTAACGCGTTGATGAAGGTGTTAAATGAAATTTATGTCACTG
ATAATATCTCTGTAAACAAGCTAGATCATTTGGTTAACAATTTGAGTGCCAACAATTTCATCTTT
TTCAATGATGATGAAATACCTCCATAAGGCATGGGATCCACGAAGACTCTACACATCACTACCTA
CTACAAAGGATATACATT
Found at i:42642121 original size:138 final size:138
Alignment explanation
Indices: 42641890--42642289 Score: 432
Period size: 138 Copynumber: 2.9 Consensus size: 138
42641880 GGTCAATGAA
* * *
42641890 ACAAATCCTATCCCCCTGAAGTTGCAGTGGGTCGGATTGAATTTACCATAGTGAATCTTATCTCC
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGATTGAAATTACCATAGTGAATCTTATCTCC
* * *
42641955 CTGAAGTTGTAGTAGAGTAAGATGAAGCTACAAATCCTATATCCTTAAAGTTGTAGTGGATCAAA
66 CTGAAGTTGCAGTGGAGTAAGATGAAGCTACAAATCCTATATCCTTAAAGTTGTAGTGGAGCAAA
*
42642020 CTGAAGCT
131 CTAAAGCT
* * * * *
42642028 ACAATTTCTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAATTACGATGGTGAATCTTATCTCC
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGATTGAAATTACCATAGTGAATCTTATCTCC
* * * ** **
42642093 CTGAAGTTGCAGTGGAGTAAGATAAAGCTACGAAT--TTTATCTCTCTGTAGTTACAGTGGAGCA
66 CTGAAGTTGCAGTGGAGTAAGATGAAGCTACAAATCCTATATC-CT-TAAAGTTGTAGTGGAGCA
*
42642156 AATTAAAGCT
129 AACTAAAGCT
* * * * * *
42642166 ATAAATCCTACACCCCTAAAGTTGTAGT-GGTTCAGATTG-AATCTACCATAGCGAATCTTATCT
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTT-GGATTGAAAT-TACCATAGTGAATCTTATCT
* * * * * *
42642229 CCTTAAAGTTGCTGTGGAGCATA-TTGAAGCTACAAATCCTATACCCTTAAAGTTGTAGTGG
64 CCCTGAAGTTGCAGTGGAGTA-AGATGAAGCTACAAATCCTATATCCTTAAAGTTGTAGTGG
42642290 GTCAGATTAA
Statistics
Matches: 211, Mismatches: 44, Indels: 14
0.78 0.16 0.05
Matches are distributed among these distances:
136 5 0.02
137 9 0.04
138 190 0.90
139 3 0.01
140 4 0.02
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (138 bp):
ACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGATTGAAATTACCATAGTGAATCTTATCTCC
CTGAAGTTGCAGTGGAGTAAGATGAAGCTACAAATCCTATATCCTTAAAGTTGTAGTGGAGCAAA
CTAAAGCT
Found at i:42642150 original size:44 final size:44
Alignment explanation
Indices: 42642080--42642166 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
42642070 TTACGATGGT
* *
42642080 GAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGA-TAAAGCTAC
1 GAATCTTATCTCCCTGAAGTTACAGTGGAGCAA-ATTAAAGCTAC
* * *
42642124 GAATTTTATCTCTCTGTAGTTACAGTGGAGCAAATTAAAGCTA
1 GAATCTTATCTCCCTGAAGTTACAGTGGAGCAAATTAAAGCTA
42642167 TAAATCCTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 1 0.03
44 36 0.97
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (44 bp):
GAATCTTATCTCCCTGAAGTTACAGTGGAGCAAATTAAAGCTAC
Found at i:42642259 original size:94 final size:94
Alignment explanation
Indices: 42642123--42642428 Score: 450
Period size: 94 Copynumber: 3.3 Consensus size: 94
42642113 GATAAAGCTA
* * * * * * * * *
42642123 CGAATTTTATCTCTCTGTAGTTACAGTGGAGCAAATTAAAGCTATAAATCCTACACCCCTAAAGT
1 CGAATCTTATCTCCCTGAAGTTGCTGTGGAGCATATTGAAGCTACAAATCCTATACCCCTAAAGT
*
42642188 TGTAGTGGTTCAGATTGAATCTACCATAG
66 TGTAGTGGGTCAGATTGAATCTACCATAG
* * *
42642217 CGAATCTTATCTCCTTAAAGTTGCTGTGGAGCATATTGAAGCTACAAATCCTATACCCTTAAAGT
1 CGAATCTTATCTCCCTGAAGTTGCTGTGGAGCATATTGAAGCTACAAATCCTATACCCCTAAAGT
*
42642282 TGTAGTGGGTCAGATTAAATCTACCATAG
66 TGTAGTGGGTCAGATTGAATCTACCATAG
*
42642311 CGAATATTATCTCCCTGAAGTTGCTGTGGAGCATATTGAAGCTACAAATCCTATACCCCTAAAGT
1 CGAATCTTATCTCCCTGAAGTTGCTGTGGAGCATATTGAAGCTACAAATCCTATACCCCTAAAGT
* *
42642376 TGTAGTGGGTCTGATTGAATATACCATAG
66 TGTAGTGGGTCAGATTGAATCTACCATAG
*
42642405 CGAATCTTATTTCCCTGAAGTTGC
1 CGAATCTTATCTCCCTGAAGTTGC
42642429 AACTGTAACA
Statistics
Matches: 189, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 189 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (94 bp):
CGAATCTTATCTCCCTGAAGTTGCTGTGGAGCATATTGAAGCTACAAATCCTATACCCCTAAAGT
TGTAGTGGGTCAGATTGAATCTACCATAG
Found at i:42642394 original size:44 final size:44
Alignment explanation
Indices: 42642251--42642394 Score: 114
Period size: 44 Copynumber: 3.1 Consensus size: 44
42642241 TGTGGAGCAT
* *
42642251 ATTGAAGCTACAAATCCTATACCCTTAAAGTTGTAGTGGGTCAG
1 ATTGAAGCTACAAATCCTATACCCCTAAAGTTGTAGTGGGTCTG
* * * * * *
42642295 ATTAAATCTACCATAGCGAATATTATCTCCCTGAAGTTGCT-GTGGAG-CAT-
1 ATTGAAGCTA-CAAATC--CTA-TA-C-CCCTAAAGTTG-TAGTGG-GTC-TG
42642345 ATTGAAGCTACAAATCCTATACCCCTAAAGTTGTAGTGGGTCTG
1 ATTGAAGCTACAAATCCTATACCCCTAAAGTTGTAGTGGGTCTG
42642389 ATTGAA
1 ATTGAA
42642395 TATACCATAG
Statistics
Matches: 74, Mismatches: 14, Indels: 24
0.66 0.12 0.21
Matches are distributed among these distances:
43 3 0.04
44 29 0.39
45 5 0.07
46 2 0.03
47 4 0.05
48 2 0.03
49 5 0.07
50 22 0.30
51 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (44 bp):
ATTGAAGCTACAAATCCTATACCCCTAAAGTTGTAGTGGGTCTG
Found at i:42644629 original size:21 final size:21
Alignment explanation
Indices: 42644604--42644668 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
42644594 TAGCCTCCGG
42644604 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
* * *
42644625 GCTTCAG-TTAGC-CTT-CGG
1 GCTTCCGTTTAGCACTTATGT
*
42644643 GCTGCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
42644664 GCTTC
1 GCTTC
42644669 AGCTAGATTT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 6 0.18
19 8 0.24
20 8 0.24
21 11 0.33
ACGTcount: A:0.12, C:0.26, G:0.23, T:0.38
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTATGT
Found at i:42644632 original size:39 final size:39
Alignment explanation
Indices: 42644586--42644670 Score: 152
Period size: 39 Copynumber: 2.2 Consensus size: 39
42644576 GCTCTGATGA
*
42644586 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTGCCGTTTAGCACTTATGT
*
42644625 GCTTCAGTTAGCCTTCGGGCTGCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTGCCGTTTAGCACTTATGT
42644664 GCTTCAG
1 GCTTCAG
42644671 CTAGATTTCG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.13, C:0.27, G:0.25, T:0.35
Consensus pattern (39 bp):
GCTTCAGTTAGCCTCCGGGCTGCCGTTTAGCACTTATGT
Found at i:42644681 original size:39 final size:39
Alignment explanation
Indices: 42644586--42644681 Score: 129
Period size: 39 Copynumber: 2.5 Consensus size: 39
42644576 GCTCTGATGA
* * * *
42644586 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGCTAGACTTCGGGCTGCCGTTTAGCACTTATGT
* *
42644625 GCTTCAGTTAGCCTTCGGGCTGCCGTTTAGCACTTATGT
1 GCTTCAGCTAGACTTCGGGCTGCCGTTTAGCACTTATGT
*
42644664 GCTTCAGCTAGATTTCGG
1 GCTTCAGCTAGACTTCGG
42644682 ACTTCAGATC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.14, C:0.26, G:0.25, T:0.35
Consensus pattern (39 bp):
GCTTCAGCTAGACTTCGGGCTGCCGTTTAGCACTTATGT
Found at i:42645749 original size:18 final size:20
Alignment explanation
Indices: 42645720--42645757 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
42645710 TTTTGCCCGG
42645720 CCCAACACAAAT-AAACAAA
1 CCCAACACAAATAAAACAAA
42645739 CCCAA-ACAAATAAAACAAA
1 CCCAACACAAATAAAACAAA
42645758 ATCCAAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.66, C:0.29, G:0.00, T:0.05
Consensus pattern (20 bp):
CCCAACACAAATAAAACAAA
Found at i:42647248 original size:12 final size:13
Alignment explanation
Indices: 42647211--42647250 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 13
42647201 TCTTTGCATA
42647211 CTTATTATTATTAT
1 CTTATTATT-TTAT
42647225 CATTATTATTTTAT
1 C-TTATTATTTTAT
42647239 CTTATT-TTTTAT
1 CTTATTATTTTAT
42647251 TATCGTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.24
13 5 0.20
14 6 0.24
15 8 0.32
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (13 bp):
CTTATTATTTTAT
Found at i:42647250 original size:17 final size:19
Alignment explanation
Indices: 42647227--42647269 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 19
42647217 ATTATTATCA
42647227 TTATTATTTTATC-TTATT
1 TTATTATTTTATCGTTATT
42647245 TT-TTA--TTATCGTTATT
1 TTATTATTTTATCGTTATT
42647261 TTATTATTT
1 TTATTATTT
42647270 CTTTTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 7
0.75 0.00 0.25
Matches are distributed among these distances:
15 5 0.24
16 7 0.33
17 6 0.29
18 2 0.10
19 1 0.05
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (19 bp):
TTATTATTTTATCGTTATT
Found at i:42647267 original size:29 final size:29
Alignment explanation
Indices: 42647215--42647280 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
42647205 TGCATACTTA
42647215 TTATTATTATCATTATTATTTTATCTTATT
1 TTATTATTATCATTATTATTTTAT-TTATT
* *
42647245 TT-TTATTATCGTTATT-TTATTATTTCTT
1 TTATTATTATCATTATTATT-TTATTTATT
42647273 TTATTATT
1 TTATTATT
42647281 TTCAGCATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 8 0.25
29 22 0.69
30 2 0.06
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.70
Consensus pattern (29 bp):
TTATTATTATCATTATTATTTTATTTATT
Found at i:42653916 original size:13 final size:13
Alignment explanation
Indices: 42653898--42653924 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
42653888 AAGAAAGACT
42653898 AGTAAAGAAAAAG
1 AGTAAAGAAAAAG
42653911 AGTAAAGAAAAAG
1 AGTAAAGAAAAAG
42653924 A
1 A
42653925 ATGGGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.22, T:0.07
Consensus pattern (13 bp):
AGTAAAGAAAAAG
Found at i:42657757 original size:131 final size:132
Alignment explanation
Indices: 42657439--42657955 Score: 609
Period size: 132 Copynumber: 3.9 Consensus size: 132
42657429 TTTAGAGAGT
* * * *
42657439 ATGAATGAAATTCT-AAAGGAATCTTCGATCATTTTG-GACAAAC-AGGAAATAGCAACCCAGCA
1 ATGAGTGAAATTCTAAAAGG-ACCTTCGATTATTTTGAG-CAAACGA-GAAATTGCAACCCAGCA
* * * * * ** * *
42657501 CGATAGGGCACGATTCCCCGAATTGCCAAACATCGAATATTACCTTCGTTTTGAAGAGTTTTTAG
63 CGTTAGGGCACGATTCCACGAATTGCCAAATATAGAACATCGCCTTCGTTTTAAAGAATTTTTAG
42657566 AAAAC
128 AAAAC
* * *
42657571 ATAAGTGAAATTC-AAAAGGGACCTTTGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACG
1 ATGAGTGAAATTCTAAAA-GGACCTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACG
* *
42657635 TTAGGGCACGATTCCACGAATTGTCAAATATAGAACATCGCCTTC-ATTTAAAGAATTTTTA-AA
65 TTAGGGCACGATTCCACGAATTGCCAAATATAGAACATCGCCTTCGTTTTAAAGAATTTTTAGAA
*
42657698 GGAC
130 -AAC
* * * *
42657702 ATGGGTGAAATTCTAAAAGGACCTTCAATTACTTTGAGCAAACGAGAAATTGCAACCCAACACGT
1 ATGAGTGAAATTCTAAAAGGACCTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGT
* * *
42657767 TAGGGCACGATTCCTCGAATTGCCAAATATAGAACATCGCCTTCGTTTTAAAGGATTTTTAGAAT
66 TAGGGCACGATTCCACGAATTGCCAAATATAGAACATCGCCTTCGTTTTAAAGAATTTTTAGAAA
42657832 AC
131 AC
* * * **
42657834 ATGAGTGAAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGT
1 ATGAGTGAAATTCTAAAAGGACCTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGT
* * *
42657899 TAGGGCACAATTCCGCGAATTGCCAAATATCA-AATC-TCGCCTTCGTTTTGAAGAATT
66 TAGGGCACGATTCCACGAATTGCCAAATAT-AGAA-CATCGCCTTCGTTTTAAAGAATT
42657956 GTTAAACGAA
Statistics
Matches: 331, Mismatches: 44, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
130 2 0.01
131 110 0.33
132 212 0.64
133 7 0.02
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27
Consensus pattern (132 bp):
ATGAGTGAAATTCTAAAAGGACCTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGT
TAGGGCACGATTCCACGAATTGCCAAATATAGAACATCGCCTTCGTTTTAAAGAATTTTTAGAAA
AC
Found at i:42657941 original size:263 final size:264
Alignment explanation
Indices: 42657484--42657961 Score: 676
Period size: 263 Copynumber: 1.8 Consensus size: 264
42657474 GGACAAACAG
* * * *
42657484 GAAATAGCAACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAATATTACCTTCG
1 GAAATAGCAACCCAACACGATAGGGCACGATTCCCCGAATTGCCAAACATAGAACATCACCTTCG
* * *
42657549 TTTTGAAGAGTTTTTAGAAAACATAAGTGAAATTCAAAAGGGACCTTTGATTATTTTGAACAAAC
66 TTTTAAAGAGTTTTTAGAAAACATAAGTGAAATTCAAAAGGGACATTCGATTATTTTGAACAAAC
* *
42657614 GAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCACGAATTGTCAAATATAGAACATCGCCTT
131 GAGAAATTGCAACCCAGCACGTTAGGGCACAATTCCACGAATTGCCAAATATAGAACATCGCCTT
*
42657679 C-ATTTAAAGAATTTTTAAAGGACATGGGTGAAATTCTAAAAGGACCTTCAATTACTTTGAGCAA
196 CGATTTAAAGAATTGTTAAAGGACATGGGTGAAATTCTAAAAGGACCTTCAATTACTTTGAGCAA
42657743 ACGA
261 ACGA
* * * * *
42657747 GAAATTGCAACCCAACACGTTAGGGCACGATTCCTCGAATTGCCAAATATAGAACATCGCCTTCG
1 GAAATAGCAACCCAACACGATAGGGCACGATTCCCCGAATTGCCAAACATAGAACATCACCTTCG
* * *** * *
42657812 TTTTAAAG-GATTTTTAGAATACATGAGTGAAATTTTGAAGGGATATTCGATTATTTTGAGCAAA
66 TTTTAAAGAG-TTTTTAGAAAACATAAGTGAAATTCAAAAGGGACATTCGATTATTTTGAACAAA
*
42657876 CGAGAAATTGCAACCCAGCACGTTAGGGCACAATTCCGCGAATTGCCAAATATCA-AATC-TCGC
130 CGAGAAATTGCAACCCAGCACGTTAGGGCACAATTCCACGAATTGCCAAATAT-AGAA-CATCGC
* *
42657939 CTTCGTTTTGAAGAATTGTTAAA
193 CTTCGATTTAAAGAATTGTTAAA
42657962 CGAATAATTA
Statistics
Matches: 186, Mismatches: 25, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
262 1 0.01
263 168 0.90
264 17 0.09
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (264 bp):
GAAATAGCAACCCAACACGATAGGGCACGATTCCCCGAATTGCCAAACATAGAACATCACCTTCG
TTTTAAAGAGTTTTTAGAAAACATAAGTGAAATTCAAAAGGGACATTCGATTATTTTGAACAAAC
GAGAAATTGCAACCCAGCACGTTAGGGCACAATTCCACGAATTGCCAAATATAGAACATCGCCTT
CGATTTAAAGAATTGTTAAAGGACATGGGTGAAATTCTAAAAGGACCTTCAATTACTTTGAGCAA
ACGA
Found at i:42661517 original size:30 final size:30
Alignment explanation
Indices: 42661483--42661581 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
42661473 CTAGCCTTTG
*
42661483 CCACCACCAATTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
42661513 CCACCACCTACTCCACTAGCCGCACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
42661543 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
42661573 CCACCACCA
1 CCACCACCA
42661582 CTTGTACCTA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.24, C:0.49, G:0.07, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:42662154 original size:25 final size:25
Alignment explanation
Indices: 42662029--42662154 Score: 95
Period size: 25 Copynumber: 5.2 Consensus size: 25
42662019 TTTTTTTTGT
* *
42662029 TATTAT-TATAT-TTTTTAATATTA
1 TATTATGTATATATCTTTAATACTA
* *
42662052 TATTATATATATATTCTTT--TAATA
1 TATTATGTATATA-TCTTTAATACTA
* * *
42662076 TATTAGGTATAT-TC-TAAATTCTA
1 TATTATGTATATATCTTTAATACTA
* *
42662099 TATTACGTATATATATATT-ATACTA
1 TATTATGTATATATCT-TTAATACTA
*
42662124 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATATCTTTAATACTA
42662149 TATTAT
1 TATTAT
42662155 TTACATTTTT
Statistics
Matches: 79, Mismatches: 15, Indels: 16
0.72 0.14 0.15
Matches are distributed among these distances:
21 1 0.01
22 2 0.03
23 20 0.25
24 22 0.28
25 29 0.37
26 5 0.06
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.56
Consensus pattern (25 bp):
TATTATGTATATATCTTTAATACTA
Found at i:42662232 original size:25 final size:24
Alignment explanation
Indices: 42662182--42662244 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
42662172 CATGTTATCT
*
42662182 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
42662208 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
**
42662233 TACATATTTTTT
1 TATGTATTTTTT
42662245 TTATATCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:42662280 original size:77 final size:73
Alignment explanation
Indices: 42662110--42662280 Score: 164
Period size: 77 Copynumber: 2.2 Consensus size: 73
42662100 ATTACGTATA
* * *
42662110 TATATATTATACTATTTTATGTATATATCTTTAATACTATATTATTTACATTTTTTTTTCTACAT
1 TATATATTATA-TA--TTATGTATATATCTTTAACACTATATTATGTACATTTTTTTTTATACAT
*
42662175 GTTATCTTATG
63 GTTATCATATG
* * *
42662186 TATATATTTTAATTATATTATGTATGTATTTTTTACACTATATTATGTACATATTTTTTTTATAT
1 TATATA--TT-A-TATATTATGTATATATCTTTAACACTATATTATGTACAT-TTTTTTTTATA-
42662251 CTAT-TTCATACATATG
60 C-ATGTT-AT-CATATG
42662267 TATATATTATATAT
1 TATATATTATATAT
42662281 ATCTTAACAT
Statistics
Matches: 79, Mismatches: 7, Indels: 17
0.77 0.07 0.17
Matches are distributed among these distances:
76 6 0.08
77 35 0.44
78 13 0.16
79 8 0.10
80 6 0.08
81 11 0.14
ACGTcount: A:0.31, C:0.08, G:0.04, T:0.57
Consensus pattern (73 bp):
TATATATTATATATTATGTATATATCTTTAACACTATATTATGTACATTTTTTTTTATACATGTT
ATCATATG
Found at i:42662334 original size:25 final size:24
Alignment explanation
Indices: 42662306--42662361 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
42662296 GTTATATTTT
*
42662306 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
42662331 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
42662354 CACTATTA
1 CACTATTA
42662362 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:42673382 original size:12 final size:12
Alignment explanation
Indices: 42673361--42673396 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
42673351 AGGGCATCTT
42673361 AAAA-AAAAGAG
1 AAAAGAAAAGAG
*
42673372 AAAAGAAAAGAA
1 AAAAGAAAAGAG
42673384 AAAAGAAAAGAG
1 AAAAGAAAAGAG
42673396 A
1 A
42673397 GAGGGATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 4 0.18
12 18 0.82
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAGAG
Found at i:42673385 original size:17 final size:16
Alignment explanation
Indices: 42673361--42673394 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
42673351 AGGGCATCTT
*
42673361 AAAAAAAAGAGAAAAG
1 AAAAAAAAAAGAAAAG
42673377 AAAAGAAAAAAGAAAAG
1 AAAA-AAAAAAGAAAAG
42673394 A
1 A
42673395 GAGAGGGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAGAAAAG
Found at i:42674429 original size:87 final size:90
Alignment explanation
Indices: 42674252--42674696 Score: 284
Period size: 100 Copynumber: 4.8 Consensus size: 90
42674242 TTATTTTATC
* * **
42674252 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAGGTCACACGCTGAGGTATTTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACACGCCAAGGTATTTT
*
42674317 CAATTTCCATTTTTCAATTTATGCT
66 CAATTTACATTTTTCAATTTATGCT
**
42674342 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTC-GG-GGCACGCCAAGGTATTTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACACGCCAAGGTATTTT
* ** *
42674404 TAATTTATGTTTTTCAATTTCTGCTTTT
66 CAATTTACATTTTTCAATTTATGC---T
* * * **
42674432 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--GCACGCTG
1 --TTTC-------AAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACACGCCA
* * *
42674495 AGGTATTTTCAATTT-CTGTTTTTCAATTTTTGCC
57 AGGTATTTTCAATTTAC-ATTTTTCAATTTATGCT
* *
42674529 TTACAAATTCTGCTTTTCAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGC
1 TTTCAAA-----------AAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACACGC
** * *
42674592 TGAGGTATTTTCAATTTTCATTTTTTTAATTTATG--
55 CAAGGTATTTTCAATTTACA-TTTTTCAATTTATGCT
* * * * ** *
42674627 TTTCTAAAAAATAAATTCATATTGCGAGAAGTGAGTTGAGCCTCAGG--ACACGCTGAGGTAGTT
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACACGCCAAGGTATTT
42674690 TCAATTT
65 TCAATTT
42674697 TTGTTTGTCA
Statistics
Matches: 297, Mismatches: 29, Indels: 60
0.77 0.08 0.16
Matches are distributed among these distances:
87 33 0.11
88 62 0.21
89 36 0.12
90 5 0.02
92 4 0.01
95 3 0.01
98 3 0.01
99 64 0.22
100 85 0.29
101 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (90 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACACGCCAAGGTATTTT
CAATTTACATTTTTCAATTTATGCT
Found at i:42674444 original size:13 final size:13
Alignment explanation
Indices: 42674400--42674444 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
42674390 CGCCAAGGTA
*
42674400 TTTTTAATTTATG
1 TTTTTAATTTCTG
42674413 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
*
42674427 CTTTTAATTTCTG
1 TTTTTAATTTCTG
42674440 TTTTT
1 TTTTT
42674445 CAAAAATCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 17 0.61
14 11 0.39
ACGTcount: A:0.16, C:0.09, G:0.07, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Done.