Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 139 of 250
Found at i:44984350 original size:43 final size:42
Alignment explanation
Indices: 44984289--44984457 Score: 189
Period size: 43 Copynumber: 4.0 Consensus size: 42
44984279 TAGGGTTTTT
* * *
44984289 GATATGTGTTCTCGTGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATGTGAT-TCATGTAAGACCACGTCTGGGACATTGGCATC
* * *
44984332 GATATGTGATTACATGTAAGACCATGTTTGGGACATCGGCATC
1 GATATGTGATT-CATGTAAGACCACGTCTGGGACATTGGCATC
* * * *
44984375 G-TATTTAATTCGTGTAAGA-CACTGTCTGGGACAGTGGCATC
1 GATATGTGATTCATGTAAGACCAC-GTCTGGGACATTGGCATC
*
44984416 GATATGTGATTGCATGTAAGACCACGTCTAGGACATTGGCAT
1 GATATGTGATT-CATGTAAGACCACGTCTGGGACATTGGCAT
44984458 TGTACGATAT
Statistics
Matches: 103, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
40 2 0.02
41 24 0.23
42 15 0.15
43 59 0.57
44 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
GATATGTGATTCATGTAAGACCACGTCTGGGACATTGGCATC
Found at i:44984450 original size:84 final size:84
Alignment explanation
Indices: 44984300--44984457 Score: 239
Period size: 84 Copynumber: 1.9 Consensus size: 84
44984290 ATATGTGTTC
* * *
44984300 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCATGTTTGGGA
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCTAGGA
44984365 CATCGGCATCGTATTTAAT
66 CATCGGCATCGTATTTAAT
*
44984384 TCGTGTAAGA-CACTGTCTGGGACAG-TGGCATCGATATGTGATTGCATGTAAGACCACGTCTAG
1 TCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTACATGTAAGACCACGTCTAG
*
44984447 GACATTGGCAT
64 GACATCGGCAT
44984458 TGTACGATAT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
83 3 0.04
84 63 0.94
85 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (84 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCTAGGA
CATCGGCATCGTATTTAAT
Found at i:45003993 original size:130 final size:130
Alignment explanation
Indices: 45003760--45004016 Score: 460
Period size: 130 Copynumber: 2.0 Consensus size: 130
45003750 GCTTATGAAA
45003760 TATACGTAATGTTATATGCTCGGTTATAAGTTAAGCATTAGATTATCATGATTCATTGGATATAA
1 TATACGTAATGTTATATGCTCGGTTATAAGTTAAGCATTAGATTATCATGATTCATTGGATATAA
* * *
45003825 TGTTTTGATATTACTTTGGGAAAATGTATGGATGGTTGTCTATTAATTGATTTGAAATGAATAAT
66 TGTTTGGATATTACTTTGGGAAAATGCATGAATGGTTGTCTATTAATTGATTTGAAATGAATAAT
*
45003890 TATACGTAATGTTATATGCTCGGTTATAAGTTAAGCATTAGATTATCATGATTTATTGGATATAA
1 TATACGTAATGTTATATGCTCGGTTATAAGTTAAGCATTAGATTATCATGATTCATTGGATATAA
* *
45003955 TGTTTGGGTATTACTTTGGGAAAATGCATGAATGGTTGTCTATTAATTGGTTTGAAATGAAT
66 TGTTTGGATATTACTTTGGGAAAATGCATGAATGGTTGTCTATTAATTGATTTGAAATGAAT
45004017 CATAATGAGA
Statistics
Matches: 121, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
130 121 1.00
ACGTcount: A:0.32, C:0.06, G:0.20, T:0.42
Consensus pattern (130 bp):
TATACGTAATGTTATATGCTCGGTTATAAGTTAAGCATTAGATTATCATGATTCATTGGATATAA
TGTTTGGATATTACTTTGGGAAAATGCATGAATGGTTGTCTATTAATTGATTTGAAATGAATAAT
Found at i:45005427 original size:45 final size:46
Alignment explanation
Indices: 45005371--45005479 Score: 125
Period size: 45 Copynumber: 2.4 Consensus size: 46
45005361 TTAATTACGG
*
45005371 GAAGGACCAAATAGC-ATAAAATGT-AAAAGTTGAACTCTAGTAGTT-
1 GAAGGATCAAATAGCTATAAAAT-TCAAAA-TTGAACTCTAGTAGTTA
* ** * *
45005416 GAAGGATCAAATAGCTGTGGAATTCAGAATTGAATTCTAGTAGTTA
1 GAAGGATCAAATAGCTATAAAATTCAAAATTGAACTCTAGTAGTTA
45005462 GAAGGATCAAATAGCTAT
1 GAAGGATCAAATAGCTAT
45005480 GGAATTAGAA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
45 30 0.56
46 24 0.44
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (46 bp):
GAAGGATCAAATAGCTATAAAATTCAAAATTGAACTCTAGTAGTTA
Found at i:45005476 original size:46 final size:44
Alignment explanation
Indices: 45005400--45005489 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 44
45005390 AATGTAAAAG
*
45005400 TTGAACTCTAGTAGTTGAAGGATCAAATAGCTGTGGAATTCAGAA
1 TTGAACTCTAGTAGTTGAAGGATCAAATAGCTATGGAATT-AGAA
*
45005445 TTGAATTCTAGTAGTTAGAAGGATCAAATAGCTATGGAATTAGAA
1 TTGAACTCTAGTAGTT-GAAGGATCAAATAGCTATGGAATTAGAA
45005490 CCTAAGGTCC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
45 19 0.45
46 23 0.55
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (44 bp):
TTGAACTCTAGTAGTTGAAGGATCAAATAGCTATGGAATTAGAA
Found at i:45008593 original size:19 final size:19
Alignment explanation
Indices: 45008565--45008621 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 19
45008555 GTCTCTGATG
*
45008565 CACTTTGGTGCCTCTATTT
1 CACTTCGGTGCCTCTATTT
* *
45008584 GTA-TTCGGTGGCTCTACTTT
1 -CACTTCGGTGCCTCTA-TTT
*
45008604 CACTTCGGTGTCTCTATT
1 CACTTCGGTGCCTCTATT
45008622 CGCATTGTGA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.11, C:0.25, G:0.19, T:0.46
Consensus pattern (19 bp):
CACTTCGGTGCCTCTATTT
Found at i:45010152 original size:16 final size:16
Alignment explanation
Indices: 45010131--45010185 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
45010121 TAATCACTTC
45010131 AATATTACATTAATAT
1 AATATTACATTAATAT
*
45010147 AATATTTATC-TTGATA-
1 AATA-TTA-CATTAATAT
* *
45010163 AATATTATATTAATTT
1 AATATTACATTAATAT
45010179 AATATTA
1 AATATTA
45010186 AATATTATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
15 7 0.23
16 15 0.48
17 8 0.26
18 1 0.03
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (16 bp):
AATATTACATTAATAT
Found at i:45016542 original size:48 final size:48
Alignment explanation
Indices: 45016389--45016704 Score: 269
Period size: 48 Copynumber: 6.6 Consensus size: 48
45016379 AAAGGGTAAG
* * *
45016389 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATATATCG
1 ATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATATA--A
** * * * * ** * **
45016439 ATACCAATGCCATGTTCC-AACATGGTCTTACACTGGCCCACATGTCG
1 ATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATATAA
* * * * * *
45016486 AGGCCGATGCCATGTCCTAGATATGGTCTTACAGTAGCTCTTATATAA
1 ATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATATAA
* * * * * **
45016534 ATGTCGATGCCATGTTCCAAATATAGTCTTACACTAGCCCATAGGTCAA
1 ATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATAT-AA
* * * *
45016583 A-GCCGTTGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATGTAA
1 ATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATATAA
* *
45016630 ATGTCGATGCCATGTCCCAAACAGGGTCTTACACTAGCTCTCATATAA
1 ATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATATAA
*
45016678 ATG-CTGATGCCATGTTCCAAACATGGT
1 ATGTC-GATGCCATGTCCCAAACATGGT
45016705 TTTCACTGGC
Statistics
Matches: 209, Mismatches: 53, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
47 18 0.09
48 152 0.73
49 25 0.12
50 14 0.07
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (48 bp):
ATGTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATATAA
Found at i:45016608 original size:96 final size:96
Alignment explanation
Indices: 45016393--45016667 Score: 354
Period size: 96 Copynumber: 2.9 Consensus size: 96
45016383 GGTAAGATGT
* * ** *
45016393 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATATATCGATACCAATGCCATGTTCC-
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATA--AATGTCGATGCCATGTTCCA
* * * *
45016457 AACATGGTCTTACACTGGCCCACATGTCGAGGC
64 AACATGGTCTTACACTAGCCCACAGGTCAAAGC
* * *
45016490 CGATGCCATGTCCTAGATATGGTCTTACAGTAGCTCTTATATAAATGTCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATAAATGTCGATGCCATGTTCCAAA
* * *
45016555 TATAGTCTTACACTAGCCCATAGGTCAAAGC
66 CATGGTCTTACACTAGCCCACAGGTCAAAGC
* * *
45016586 CGTTGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATGTAAATGTCGATGCCATGTCCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATAAATGTCGATGCCATGTTCCAAA
*
45016651 CAGGGTCTTACACTAGC
66 CATGGTCTTACACTAGC
45016668 TCTCATATAA
Statistics
Matches: 153, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
95 15 0.10
96 99 0.65
97 39 0.25
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATAAATGTCGATGCCATGTTCCAAA
CATGGTCTTACACTAGCCCACAGGTCAAAGC
Found at i:45016689 original size:96 final size:93
Alignment explanation
Indices: 45016393--45016704 Score: 329
Period size: 96 Copynumber: 3.2 Consensus size: 93
45016383 GGTAAGATGT
* * ** *
45016393 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATATATCGATACCAATGCCATGTTCC-
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATA--AATGTCGATGCCATGTTCCA
* * * *
45016457 AACATGGTCTTACACTGGCCCACATGTCGAGGC
64 AACATGGTCTTACACTAG-CC-CATAT-AAAGC
* * *
45016490 CGATGCCATGTCCTAGATATGGTCTTACAGTAGCTCTTATATAAATGTCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATAAATGTCGATGCCATGTTCCAAA
* *
45016555 TATAGTCTTACACTAGCCCATAGGTCAAAGC
66 CATGGTCTTACACTAGCCCATA--T-AAAGC
* * *
45016586 CGTTGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATGTAAATGTCGATGCCATGTCCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATAAATGTCGATGCCATGTTCCAAA
*
45016651 CAGGGTCTTACACTAGCTCTCATATAAATGC
66 CATGGTCTTACACTAGC-C-CATATAAA-GC
* * *
45016682 TGATGCCATGTTCCAAACATGGT
1 CGATGCCATGTCCCAGACATGGT
45016705 TTTCACTGGC
Statistics
Matches: 182, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
94 3 0.02
95 20 0.11
96 115 0.63
97 40 0.22
98 4 0.02
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATAAATGTCGATGCCATGTTCCAAA
CATGGTCTTACACTAGCCCATATAAAGC
Found at i:45024262 original size:23 final size:23
Alignment explanation
Indices: 45024236--45024281 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
45024226 CCTACTGTTT
*
45024236 GACTAACTATTGTTAAGGGATTA
1 GACTAAATATTGTTAAGGGATTA
45024259 GACTAAATATTGTTAAGGGATTA
1 GACTAAATATTGTTAAGGGATTA
45024282 CACACTGAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.35
Consensus pattern (23 bp):
GACTAAATATTGTTAAGGGATTA
Found at i:45036493 original size:96 final size:96
Alignment explanation
Indices: 45036325--45036554 Score: 415
Period size: 96 Copynumber: 2.4 Consensus size: 96
45036315 AAAGGGTAAG
* *
45036325 ATGCCGATGCCATGTTCCAAGCATGGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCAAGGCCGATGCCATGTCC
45036390 CAAACATGGTCTTACACTAGCTCTCATATAA
66 CAAACATGGTCTTACACTAGCTCTCATATAA
45036421 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCAAGGCCGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCAAGGCCGATGCCATGTCC
*
45036486 CAGACATGGTCTTACACTAGCTCTCATATAA
66 CAAACATGGTCTTACACTAGCTCTCATATAA
* *
45036517 ATGTCGATGCCATGTTCCAAACATGGTTTTACACTAGC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGC
45036555 TCATATGACT
Statistics
Matches: 129, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 129 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (96 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCAAGGCCGATGCCATGTCC
CAAACATGGTCTTACACTAGCTCTCATATAA
Found at i:45036555 original size:48 final size:48
Alignment explanation
Indices: 45036327--45036557 Score: 309
Period size: 48 Copynumber: 4.8 Consensus size: 48
45036317 AGGGTAAGAT
* * * **
45036327 GCCGATGCCATGTTCCAAGCATGGTCTTACACTAGCCCACATGTCGAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
* * *
45036375 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATAAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
* * *
45036423 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCAAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
* * * *
45036471 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
* *
45036519 GTCGATGCCATGTTCCAAACATGGTTTTACACTAGCTCA
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCA
45036558 TATGACTCTA
Statistics
Matches: 157, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 157 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAG
Found at i:45040512 original size:34 final size:34
Alignment explanation
Indices: 45040474--45040541 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
45040464 TGGTTGATGC
*
45040474 CTTCATCAGAAAGGCAATGTTTAAATTGAGGGCT
1 CTTCATCAGAAAGGCAATGTCTAAATTGAGGGCT
45040508 CTTCATCAGAAAGGCAATGTCTAAATTGAGGGCT
1 CTTCATCAGAAAGGCAATGTCTAAATTGAGGGCT
45040542 ATGTTTTCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (34 bp):
CTTCATCAGAAAGGCAATGTCTAAATTGAGGGCT
Found at i:45055691 original size:26 final size:26
Alignment explanation
Indices: 45055662--45055717 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
45055652 AGAGTTGCAC
45055662 AAACTTAACCATGCTCATTTGCTTGT
1 AAACTTAACCATGCTCATTTGCTTGT
45055688 AAACTTAACCATGCTCATTTGCTTGT
1 AAACTTAACCATGCTCATTTGCTTGT
45055714 AAAC
1 AAAC
45055718 ATATCATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (26 bp):
AAACTTAACCATGCTCATTTGCTTGT
Found at i:45057182 original size:35 final size:36
Alignment explanation
Indices: 45057108--45057220 Score: 169
Period size: 37 Copynumber: 3.1 Consensus size: 36
45057098 TTATTACGAA
45057108 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCTCCACACG-AGTTATCGG
45057145 GTCTTACCCGGACATAATCTCCACAC-AGTTATCGG
1 GTCTTACCCGGACATAATCTCCACACGAGTTATCGG
*
45057180 GTCTTACCCGGACA-AAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCT-CCACACG-AGTTATCGG
45057216 GTCTT
1 GTCTT
45057221 TAGAGCTCGG
Statistics
Matches: 72, Mismatches: 1, Indels: 7
0.90 0.01 0.09
Matches are distributed among these distances:
33 1 0.01
34 9 0.12
35 23 0.32
36 13 0.18
37 26 0.36
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (36 bp):
GTCTTACCCGGACATAATCTCCACACGAGTTATCGG
Found at i:45057531 original size:47 final size:47
Alignment explanation
Indices: 45057339--45057910 Score: 947
Period size: 47 Copynumber: 12.4 Consensus size: 47
45057329 CCCTTCGGGA
* *
45057339 CTTATCACATTTATGCACTTTCACATTCATCACAT--G-C--T-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45057380 CTT-TCACATAT-TACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45057425 CTTAT-ACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45057470 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45057517 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45057564 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45057611 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45057658 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45057705 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45057750 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45057799 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45057846 CTTATCACACATATACACTTTCACATTCATCACAT-GGCCATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45057891 CTTATCACATATATACACTT
1 CTTATCACATATATACACTT
45057911 CTTGGCTGAA
Statistics
Matches: 508, Mismatches: 9, Indels: 24
0.94 0.02 0.04
Matches are distributed among these distances:
39 21 0.04
40 7 0.01
41 4 0.01
42 1 0.00
44 1 0.00
45 88 0.17
46 67 0.13
47 274 0.54
49 45 0.09
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45059223 original size:47 final size:47
Alignment explanation
Indices: 45059045--45059308 Score: 451
Period size: 47 Copynumber: 5.6 Consensus size: 47
45059035 CATTCGGCTA
*
45059045 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCT
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
45059092 ATTAGG-CTTATCACACATATACACTTTCACATTCATCACATC-GCC
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
*
45059137 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCC
1 ATTAGGCCTTATCAC--ACATATACACTTTCACATTCATCACATCGGCC
* *
45059186 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCT
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
45059233 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
*
45059280 ATTAGGCCTTATCACATATATACACTTTC
1 ATTAGGCCTTATCACACATATACACTTTC
45059309 TTGGCTGAAT
Statistics
Matches: 207, Mismatches: 6, Indels: 8
0.94 0.03 0.04
Matches are distributed among these distances:
45 8 0.04
46 44 0.21
47 110 0.53
48 27 0.13
49 18 0.09
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
Found at i:45060504 original size:47 final size:47
Alignment explanation
Indices: 45060445--45060709 Score: 460
Period size: 47 Copynumber: 5.6 Consensus size: 47
45060435 CATTCGGCTA
*
45060445 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCT
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
45060492 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
*
45060539 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCC
1 ATTAGGCCTTATCAC--ACATATACACTTTCACATTCATCACATCGGCC
* *
45060588 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCT
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
45060635 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
*
45060682 ATTAGGCCTTATCACATATA-ACACTTTC
1 ATTAGGCCTTATCACACATATACACTTTC
45060710 TTGGCTGAAT
Statistics
Matches: 210, Mismatches: 6, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
46 8 0.04
47 156 0.74
49 46 0.22
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
Found at i:45060726 original size:96 final size:94
Alignment explanation
Indices: 45060433--45060709 Score: 475
Period size: 96 Copynumber: 2.9 Consensus size: 94
45060423 TATACATATA
*
45060433 CACATTCGGCTAATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGG
1 CACA-TCGGCT-ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
*
45060498 CCTTATCACACATATACACTTTCACATTCAT
64 CCTTATCACATATATACACTTTCACATTCAT
* *
45060529 CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CACATCGGCTATTAGGCCTTATCAC--ACATATACACTTTCACATTCATCACATCGGCCATTAGG
45060594 CCTTATCACATATATACACTTTCACATTCAT
64 CCTTATCACATATATACACTTTCACATTCAT
45060625 CACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 CACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
45060690 TTATCACATATA-ACACTTTC
66 TTATCACATATATACACTTTC
45060710 TTGGCTGAAT
Statistics
Matches: 173, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
93 8 0.05
94 66 0.38
95 5 0.03
96 94 0.54
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATCACATATATACACTTTCACATTCAT
Found at i:45060726 original size:143 final size:142
Alignment explanation
Indices: 45060445--45060709 Score: 480
Period size: 143 Copynumber: 1.9 Consensus size: 142
45060435 CATTCGGCTA
45060445 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACA
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACA
*
45060510 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
66 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATG
*
45060575 CATCACATCGGCC
130 AATCACATCGGCC
*
45060588 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACA
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACA
45060653 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATA-ACACTTTC
66 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTC
45060710 TTGGCTGAAT
Statistics
Matches: 121, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
140 8 0.07
141 5 0.04
143 108 0.89
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (142 bp):
ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACA
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATGA
ATCACATCGGCC
Found at i:45064792 original size:45 final size:47
Alignment explanation
Indices: 45064710--45065020 Score: 343
Period size: 44 Copynumber: 7.1 Consensus size: 47
45064700 ATTATCCTAT
45064710 TCACA-ATATACACTTTCACA-T-ATTCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTTTCACATTCA-TCACATCGGCTATTAGGCCTTA
*
45064755 T-ACA-TTATACACTTTCACATTCATCACATCGGCTATTA-GCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
45064799 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
45064846 TCACACATATACACTTTCACA-T--TCACATCGGCCATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
* *
45064890 TCACATAATATACACTTTCACATTCATCACATC-GC--CTA-----TA
1 TCACA-CATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
45064930 T--CACATATACACTTTCACATTCAT--CAGCGGC---TAGGTTCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGG--CCTTA
*
45064972 TCACACATATACAC-TTCACATTCATCACAT-GGCCATTAGG-CTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
45065016 TCACA
1 TCACA
45065021 TAACACTTTC
Statistics
Matches: 234, Mismatches: 8, Indels: 49
0.80 0.03 0.17
Matches are distributed among these distances:
35 5 0.02
36 2 0.01
37 20 0.09
38 2 0.01
40 3 0.01
42 3 0.01
43 11 0.05
44 73 0.31
45 39 0.17
46 36 0.15
47 33 0.14
48 7 0.03
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
Found at i:45064834 original size:91 final size:90
Alignment explanation
Indices: 45064635--45065030 Score: 365
Period size: 80 Copynumber: 4.6 Consensus size: 90
45064625 TATGCTACAT
*
45064635 ATATACACTTCCACATT-ATCCACA-CGGCTATTAGGC-TA-CACATATAACAC--TC-CA-TC-
1 ATATACACTTTCACATTCAT-CACATCGGCTATTAGGCTTATCACATAT-ACACTTTCACATTCA
*
45064691 TC-CA-CGG-TGATTATCC-TATTCACA-
64 TCACATCGGCT-ATTAGCCTTA-TCACAC
45064715 ATATACACTTTCACA-T-ATTCACATCGGCTATTAGGCCTTAT-ACATTATACACTTTCACATTC
1 ATATACACTTTCACATTCA-TCACATCGGCTATTAGG-CTTATCACA-TATACACTTTCACATTC
45064777 ATCACATCGGCTATTAGCCTTATCACAC
63 ATCACATCGGCTATTAGCCTTATCACAC
45064805 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACA-T-
1 ATATACACTTTCACATTCATCACATCGGCTATTAGG-CTTAT--CACATATACACTTTCACATTC
* *
45064868 -TCACATCGGCCATTAGGCCTTATCACATA
63 ATCACATCGGCTATTA-GCCTTATCACA-C
*
45064897 ATATACACTTTCACATTCATCACATC-GC--CTA----TATCACATATACACTTTCACATTCAT-
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCTTATCACATATACACTTTCACATTCATC
*
45064954 -CAGCGGCTAGGTT--CCTTATCACAC
66 ACATCGGCTA--TTAGCCTTATCACAC
*
45064978 ATATACAC-TTCACATTCATCACAT-GGCCATTAGGCTTATCACATA-ACACTTTC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCTTATCACATATACACTTTC
45065031 TTGCTACATC
Statistics
Matches: 272, Mismatches: 9, Indels: 65
0.79 0.03 0.19
Matches are distributed among these distances:
79 6 0.02
80 44 0.16
81 9 0.03
82 39 0.14
83 11 0.04
84 5 0.02
85 13 0.05
86 11 0.04
87 2 0.01
88 2 0.01
89 16 0.06
90 32 0.12
91 37 0.14
92 28 0.10
93 14 0.05
94 3 0.01
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.32
Consensus pattern (90 bp):
ATATACACTTTCACATTCATCACATCGGCTATTAGGCTTATCACATATACACTTTCACATTCATC
ACATCGGCTATTAGCCTTATCACAC
Found at i:45064935 original size:129 final size:129
Alignment explanation
Indices: 45064710--45065023 Score: 373
Period size: 126 Copynumber: 2.4 Consensus size: 129
45064700 ATTATCCTAT
*
45064710 TCACA-ATATACACTTTCACATATTCACATCGGCTATTAGGCCTTAT-ACAT--TATACACTTTC
1 TCACACATATACACTTTCAC--ATTCACATCGGCCATTAGGCCTTATCACATAATATACACTTTC
* *
45064771 ACATTCATCACATCGGCTATTAGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTA
64 ACATTCATCACATCGGC-ACTA--C-TAT-ACACATATACACTTTCACATTCAT--CAGCGGC--
45064836 TTAGG-CCTTA
120 -TAGGTCCTTA
45064846 TCACACATATACACTTTCACATTCACATCGGCCATTAGGCCTTATCACATAATATACACTTTCAC
1 TCACACATATACACTTTCACATTCACATCGGCCATTAGGCCTTATCACATAATATACACTTTCAC
45064911 ATTCATCACATC-GC-CTA-TAT-CACATATACACTTTCACATTCATCAGCGGCTAGGTTCCTTA
66 ATTCATCACATCGGCACTACTATACACATATACACTTTCACATTCATCAGCGGCTAGG-TCCTTA
45064972 TCACACATATACAC-TTCACATTCATCA-CATGGCCATTAGG-CTTATCACATAA
1 TCACACATATACACTTTCACATTCA-CATC--GGCCATTAGGCCTTATCACATAA
45065024 CACTTTCTTG
Statistics
Matches: 166, Mismatches: 3, Indels: 28
0.84 0.02 0.14
Matches are distributed among these distances:
124 4 0.02
125 11 0.07
126 33 0.20
127 16 0.10
129 23 0.14
131 3 0.02
135 26 0.16
136 9 0.05
137 16 0.10
138 25 0.15
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (129 bp):
TCACACATATACACTTTCACATTCACATCGGCCATTAGGCCTTATCACATAATATACACTTTCAC
ATTCATCACATCGGCACTACTATACACATATACACTTTCACATTCATCAGCGGCTAGGTCCTTA
Found at i:45064998 original size:80 final size:81
Alignment explanation
Indices: 45064849--45065001 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
45064839 GGCCTTATCA
*
45064849 CACATATACACTTTCACATTCACATCGGCCATTAGGCCTTATCACATAATATACACTTTCACATT
1 CACATATACACTTTCACATTCACAGCGGCCA-TAGGCCTTATCACATAATATACACTTTCACATT
45064914 CATCACATCGCCTATAT
65 CATCACATCGCCTATAT
*
45064931 CACATATACACTTTCACATTCATCAGCGG-C-TAGGTTCCTTATCACA-CATATACAC-TTCACA
1 CACATATACACTTTCACATTCA-CAGCGGCCATAGG--CCTTATCACATAATATACACTTTCACA
45064992 TTCATCACAT
63 TTCATCACAT
45065002 GGCCATTAGG
Statistics
Matches: 66, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
80 20 0.30
81 8 0.12
82 33 0.50
83 5 0.08
ACGTcount: A:0.31, C:0.31, G:0.07, T:0.31
Consensus pattern (81 bp):
CACATATACACTTTCACATTCACAGCGGCCATAGGCCTTATCACATAATATACACTTTCACATTC
ATCACATCGCCTATAT
Found at i:45066195 original size:47 final size:47
Alignment explanation
Indices: 45066136--45066399 Score: 435
Period size: 47 Copynumber: 5.6 Consensus size: 47
45066126 CATTCGGCTA
*
45066136 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCT
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
45066183 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACA-CGGCC
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
*
45066229 ATTAGGCCTTATCACATATTATATACACTTTCACATTCATCACATCGGCC
1 ATTAGGCCTTATCAC--A-CATATACACTTTCACATTCATCACATCGGCC
* *
45066279 ATTA-GCCTTATCACA-TTATACACTTTCACATTCATCACATCGGCT
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
45066324 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
*
45066371 ATTAGGCCTTATCACATATATACACTTTC
1 ATTAGGCCTTATCACACATATACACTTTC
45066400 TTGGCTGAAT
Statistics
Matches: 204, Mismatches: 7, Indels: 12
0.91 0.03 0.05
Matches are distributed among these distances:
45 32 0.16
46 30 0.15
47 98 0.48
48 1 0.00
49 34 0.17
50 9 0.04
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
Found at i:45067659 original size:49 final size:47
Alignment explanation
Indices: 45067520--45067784 Score: 435
Period size: 46 Copynumber: 5.6 Consensus size: 47
45067510 CATTCGGCTA
* *
45067520 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCT
1 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
*
45067567 ATTAGGCCTTATCACACATAATACACTTTCACATTCATCACATCGGCC
1 ATTAGGCCTTATCACATAT-ATACACTTTCACATTCATCACATCGGCC
45067615 ATTAGGCCTTATCAACTATATATACACTTTCACATTCATCACATCGGCC
1 ATTAGGCCTTATC-AC-ATATATACACTTTCACATTCATCACATCGGCC
*
45067664 ATTAGGCCTTATCACATATATACAC-TTCACATTCATCACATCGGCT
1 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
* *
45067710 ATTAGGCCTCA-CACACATATACACTTTCACATTCATCACATCGGCC
1 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
45067756 ATTAGGCCTTATCACATATATACACTTTC
1 ATTAGGCCTTATCACATATATACACTTTC
45067785 TTGGCTGAAT
Statistics
Matches: 205, Mismatches: 8, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
45 12 0.06
46 60 0.29
47 45 0.22
48 42 0.20
49 43 0.21
50 3 0.01
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (47 bp):
ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
Found at i:45070415 original size:22 final size:22
Alignment explanation
Indices: 45070387--45070508 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
45070377 TTCCACATCC
45070387 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
45070409 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
45070433 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
45070456 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
45070480 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
45070503 ATCACA
1 ATCACA
45070509 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:45070422 original size:47 final size:47
Alignment explanation
Indices: 45070359--45070807 Score: 678
Period size: 47 Copynumber: 9.6 Consensus size: 47
45070349 CCCTTCGGGA
* * *
45070359 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
45070406 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
45070453 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
45070500 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
45070547 CTTA-CTCATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
45070593 CTTATCAC--ATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
45070638 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
45070687 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
45070734 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
45070781 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
45070808 TATTCAAATA
Statistics
Matches: 378, Mismatches: 17, Indels: 14
0.92 0.04 0.03
Matches are distributed among these distances:
45 44 0.12
46 44 0.12
47 247 0.65
49 42 0.11
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:45070602 original size:22 final size:22
Alignment explanation
Indices: 45070574--45070647 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
45070564 GTTCACATTC
45070574 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
45070596 ATCACA-T-ACACATGTTC-ACATT
1 ATCACATTGGC-CA--TTCGGCCTT
45070618 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
45070641 ATCACAT
1 ATCACAT
45070648 ATATATACAC
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
20 1 0.03
21 3 0.08
22 19 0.49
23 12 0.31
24 3 0.08
25 1 0.03
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:45072199 original size:85 final size:85
Alignment explanation
Indices: 45072070--45072248 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
45072060 TATTTTATTG
*
45072070 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
45072135 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
45072155 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
45072220 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
45072240 CCCATGCTC
1 CCCATGCTC
45072249 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:45073544 original size:40 final size:40
Alignment explanation
Indices: 45073499--45073778 Score: 413
Period size: 40 Copynumber: 7.0 Consensus size: 40
45073489 CGAATACACG
* * * *
45073499 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * * *
45073539 ACACCAGCACGAATGCTCTTCGGG-TTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
45073578 TCACTAGCACGAATGCTCTTCGGAAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGG-GACTTAGCCCGGATACA
45073619 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
45073659 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
45073698 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
45073738 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
45073777 TC
1 TC
45073779 GTCGAGACCT
Statistics
Matches: 222, Mismatches: 15, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
39 76 0.34
40 112 0.50
41 34 0.15
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:45073716 original size:79 final size:80
Alignment explanation
Indices: 45073512--45073778 Score: 414
Period size: 79 Copynumber: 3.4 Consensus size: 80
45073502 CCAGCATGAT
* * * * * * *
45073512 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGG-TTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
*
45073576 TATCACTAGCACGAA
66 CATCACTAGCACGAA
*
45073591 TGCTCTTCGGAAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TGCTCTTCGG-GACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
*
45073656 ACATCACTAGCATGAA
65 ACATCACTAGCACGAA
45073672 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
45073736 CATCACTAGCACGAA
66 CATCACTAGCACGAA
45073751 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
45073779 GTCGAGACCT
Statistics
Matches: 173, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
79 90 0.52
80 51 0.29
81 32 0.18
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:45073901 original size:38 final size:38
Alignment explanation
Indices: 45073832--45073906 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
45073822 GAATTTTAAT
*
45073832 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
45073870 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
45073907 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:45076397 original size:47 final size:47
Alignment explanation
Indices: 45076325--45076731 Score: 604
Period size: 47 Copynumber: 8.6 Consensus size: 47
45076315 CCCTTCGGGA
* * * *
45076325 CTTATCACATTTATACGCTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
45076372 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
45076419 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
45076466 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
45076513 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
45076560 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
45076609 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
45076656 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
45076705 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
45076732 TATTCAAATA
Statistics
Matches: 340, Mismatches: 14, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 248 0.73
49 90 0.26
50 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:45076489 original size:94 final size:95
Alignment explanation
Indices: 45076325--45076731 Score: 608
Period size: 96 Copynumber: 4.3 Consensus size: 95
45076315 CCCTTCGGGA
* * * *
45076325 CTTATCACATTTATACGCTTCCACATCCATCACATTGGCCATTCGGCCTTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATACA
45076389 CTTTCACATTCATCACATTGGCCATTCGGC
66 CTTTCACATTCATCACATTGGCCATTCGGC
* * * *
45076419 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTC-ATATATGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATAC
45076482 A-TGTTCACATTCATCACATTGGCCATTCGGC
65 ACT-TTCACATTCATCACATTGGCCATTCGGC
* *
45076513 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATATATA
45076577 CACTTTCACATTCATCACATTGGCCATTCGGC
64 CACTTTCACATTCATCACATTGGCCATTCGGC
* *
45076609 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATATATAC
* *
45076674 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATTGGCCATTCGGC
45076705 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
45076732 TATTCAAATA
Statistics
Matches: 287, Mismatches: 20, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
93 2 0.01
94 132 0.46
96 151 0.53
97 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.34
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATACA
CTTTCACATTCATCACATTGGCCATTCGGC
Found at i:45078123 original size:85 final size:85
Alignment explanation
Indices: 45077994--45078172 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
45077984 TATTTTATTG
*
45077994 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
45078059 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
45078079 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
45078144 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
45078164 CCCATGCTC
1 CCCATGCTC
45078173 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:45082857 original size:34 final size:34
Alignment explanation
Indices: 45082819--45082901 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 34
45082809 GTAATAGTTA
* * *
45082819 GGGCCTAAGCCCATTTTAGTAACAGTAGCAATAT
1 GGGCCTAAGCCCATTTCAGTAACAATACCAATAT
** * * *
45082853 GGGCCTAAGCCTGTTTCAGTGACAATACCAGTCT
1 GGGCCTAAGCCCATTTCAGTAACAATACCAATAT
45082887 GGGCCTAAGCCCATT
1 GGGCCTAAGCCCATT
45082902 AACATATCAG
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTCAGTAACAATACCAATAT
Found at i:45085776 original size:28 final size:28
Alignment explanation
Indices: 45085736--45085856 Score: 206
Period size: 28 Copynumber: 4.3 Consensus size: 28
45085726 ATGTACTAGA
45085736 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
45085764 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
45085792 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* * * *
45085820 ACACCCTTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
45085848 ATACCCCTA
1 ATACCCCTA
45085857 GGGTTAATTT
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 87 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:45086024 original size:27 final size:27
Alignment explanation
Indices: 45085962--45086051 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
45085952 AGGAAGCGTC
45085962 CTGGTGGCTA-TGCCACAAATGATCTGTT
1 CTGGTGGC-ACTGCCACAAAT-ATCTGTT
* * *
45085990 CTGGTGGCCCTGCCACATATATTTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
45086017 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
45086046 CTGGTG
1 CTGGTG
45086052 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 21 0.40
28 25 0.47
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:45093152 original size:27 final size:27
Alignment explanation
Indices: 45093113--45093250 Score: 129
Period size: 27 Copynumber: 5.1 Consensus size: 27
45093103 GCGTACCTGA
45093113 ACCCTTATGTGATAAAATGACGATAAT
1 ACCCTTATGTGATAAAATGACGATAAT
* *
45093140 GCCCTTATGTGATAAAATGACGATATT
1 ACCCTTATGTGATAAAATGACGATAAT
* * **
45093167 ACCTTTATGTGATAAAATGACAATTTT
1 ACCCTTATGTGATAAAATGACGATAAT
*
45093194 ACCCTTATAG-GGTAAAATGACCGA-AAT
1 ACCCTTAT-GTGATAAAATGA-CGATAAT
** * *
45093221 ACCCCCATAG-GGTAAAATGACTATAAT
1 ACCCTTAT-GTGATAAAATGACGATAAT
45093248 ACC
1 ACC
45093251 TCCATAGGGA
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
26 2 0.02
27 89 0.95
28 3 0.03
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (27 bp):
ACCCTTATGTGATAAAATGACGATAAT
Found at i:45093255 original size:27 final size:26
Alignment explanation
Indices: 45093200--45093376 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 26
45093190 TTTTACCCTT
*
45093200 ATAGGGTAAAATGACCGA-AATACCCCC
1 ATAGGGTAAAATGA-CTATAATA-CCCC
45093227 ATAGGGTAAAATGACTATAATACCTCC
1 ATAGGGTAAAATGACTATAATACC-CC
* * * *
45093254 ATAGGGAAAAATAACTGTAATACCCT
1 ATAGGGTAAAATGACTATAATACCCC
* * * *
45093280 GTAGGGTAAAATGACTGTGAGA-CCC
1 ATAGGGTAAAATGACTATAATACCCC
* *
45093305 ATGTAGGGTAAAATGACTGTGATA-CCC
1 A--TAGGGTAAAATGACTATAATACCCC
45093332 ATGTAGGGTAAAATGACTATAATACCCC
1 A--TAGGGTAAAATGACTATAATACCCC
* *
45093360 TGTAAGGTAAAATGACT
1 -ATAGGGTAAAATGACT
45093377 GATTTGCTCT
Statistics
Matches: 127, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
25 2 0.02
26 22 0.17
27 100 0.79
28 3 0.02
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (26 bp):
ATAGGGTAAAATGACTATAATACCCC
Found at i:45093258 original size:54 final size:53
Alignment explanation
Indices: 45093200--45093377 Score: 189
Period size: 54 Copynumber: 3.3 Consensus size: 53
45093190 TTTTACCCTT
* * **
45093200 ATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTATAATACCTCC
1 ATAGGGTAAAATGACTGTAATACCCCTGTAGGGTAAAATGACTATAATACC-CC
* * * * *
45093254 ATAGGGAAAAATAACTGTAATA-CCCTGTAGGGTAAAATGACTGTGAGA-CCC
1 ATAGGGTAAAATGACTGTAATACCCCTGTAGGGTAAAATGACTATAATACCCC
* *
45093305 ATGTAGGGTAAAATGACTGTGATACCCATGTAGGGTAAAATGACTATAATACCCC
1 A--TAGGGTAAAATGACTGTAATACCCCTGTAGGGTAAAATGACTATAATACCCC
* *
45093360 TGTAAGGTAAAATGACTG
1 -ATAGGGTAAAATGACTG
45093378 ATTTGCTCTG
Statistics
Matches: 101, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
51 3 0.03
52 1 0.01
53 39 0.39
54 55 0.54
55 3 0.03
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (53 bp):
ATAGGGTAAAATGACTGTAATACCCCTGTAGGGTAAAATGACTATAATACCCC
Found at i:45093318 original size:80 final size:80
Alignment explanation
Indices: 45093228--45093377 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
45093218 AATACCCCCA
* *
45093228 TAGGGTAAAATGACTATAATACCTCCA-TAGGGAAAAATAACTGTAATA-CCCTGTAGGGTAAAA
1 TAGGGTAAAATGACTATAATA-C-CCAGTAGGGAAAAATAACTATAATACCCCTGTAAGGTAAAA
45093291 TGACTGTGAGACCCATG
64 TGACTGTGAGACCCATG
* * * *
45093308 TAGGGTAAAATGACTGTGATACCCATGTAGGGTAAAATGACTATAATACCCCTGTAAGGTAAAAT
1 TAGGGTAAAATGACTATAATACCCA-GTAGGGAAAAATAACTATAATACCCCTGTAAGGTAAAAT
45093373 GACTG
65 GACTG
45093378 ATTTGCTCTG
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
78 3 0.05
79 1 0.02
80 37 0.61
81 20 0.33
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (80 bp):
TAGGGTAAAATGACTATAATACCCAGTAGGGAAAAATAACTATAATACCCCTGTAAGGTAAAATG
ACTGTGAGACCCATG
Found at i:45093794 original size:18 final size:18
Alignment explanation
Indices: 45093767--45093809 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
45093757 TATTTGCATT
*
45093767 CTGCACTGATTACTG-TTA
1 CTGCACTGATCA-TGTTTA
*
45093785 CTGCATTGATCATGTTTA
1 CTGCACTGATCATGTTTA
45093803 CTGCACT
1 CTGCACT
45093810 AATTATTGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (18 bp):
CTGCACTGATCATGTTTA
Found at i:45097216 original size:55 final size:54
Alignment explanation
Indices: 45097087--45097293 Score: 229
Period size: 53 Copynumber: 3.8 Consensus size: 54
45097077 ATTAGGGTTT
* * *
45097087 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * * * *
45097141 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGT-AAGTTCTATAAGGC
* * ** * *
45097196 AAAGATCCCATGTAAGACCATGCCAAGGTATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* *
45097249 AAGGATACCACGTAAGACCATGTCAAGACATGGCCA-TGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAAGTT
45097294 TAAAAAGGAA
Statistics
Matches: 123, Mismatches: 28, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
53 42 0.34
54 39 0.32
55 42 0.34
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:45111752 original size:42 final size:44
Alignment explanation
Indices: 45111661--45111801 Score: 134
Period size: 42 Copynumber: 3.3 Consensus size: 44
45111651 CATCCCAAAA
* * *
45111661 TGGTCTTACATGTAAA-CATATA-TCGATGCCACTGTCCTAGAC-
1 TGGTCTTACACGTAAATCATA-AGTCGATGCCAATGTCCCAGACT
* *
45111703 AGAGTCTTAGACG-AAATCA-AA-TACGATGCCAATGTCCCAGACT
1 TG-GTCTTACACGTAAATCATAAGT-CGATGCCAATGTCCCAGACT
**
45111746 TGGTCTTACACGTAAATCATAAGTCGATGCCAACATCCCAGA-T
1 TGGTCTTACACGTAAATCATAAGTCGATGCCAATGTCCCAGACT
45111789 GTGGTCTTACACG
1 -TGGTCTTACACG
45111802 GAAACACATA
Statistics
Matches: 82, Mismatches: 9, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
41 2 0.02
42 31 0.38
43 18 0.22
44 30 0.37
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (44 bp):
TGGTCTTACACGTAAATCATAAGTCGATGCCAATGTCCCAGACT
Found at i:45111785 original size:44 final size:43
Alignment explanation
Indices: 45111644--45111801 Score: 132
Period size: 42 Copynumber: 3.7 Consensus size: 43
45111634 AGCTCGTACA
** *
45111644 ATGCCAACATCCCA-AAATGGTCTTACATGTAAA-CATATATCG
1 ATGCCAACATCCCAGACTTGGTCTTACACGTAAATCATA-ATCG
* * * *
45111686 ATGCC-ACTGTCCTAGAC-AGAGTCTTAGACG-AAATCA-AATACG
1 ATGCCAAC-ATCCCAGACTTG-GTCTTACACGTAAATCATAAT-CG
**
45111728 ATGCCAATGTCCCAGACTTGGTCTTACACGTAAATCATAAGTCG
1 ATGCCAACATCCCAGACTTGGTCTTACACGTAAATCATAA-TCG
45111772 ATGCCAACATCCCAGA-TGTGGTCTTACACG
1 ATGCCAACATCCCAGACT-TGGTCTTACACG
45111802 GAAACACATA
Statistics
Matches: 93, Mismatches: 12, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
41 4 0.04
42 38 0.41
43 20 0.22
44 30 0.32
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACATCCCAGACTTGGTCTTACACGTAAATCATAATCG
Found at i:45113671 original size:30 final size:30
Alignment explanation
Indices: 45113618--45113708 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
45113608 GGACAGGTAA
* *
45113618 CTTGATATAAATTTCATCTTGTATGAGCAAC
1 CTTGATAT-AATGTCAACTTGTATGAGCAAC
* *
45113649 CTTGATATAATGTCAGCTTGTATGAGAAAC
1 CTTGATATAATGTCAACTTGTATGAGCAAC
* * * *
45113679 CCTAATATAATGTCAATTTGTGTGAGCAAC
1 CTTGATATAATGTCAACTTGTATGAGCAAC
45113709 TTATTTCACC
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
30 43 0.84
31 8 0.16
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35
Consensus pattern (30 bp):
CTTGATATAATGTCAACTTGTATGAGCAAC
Found at i:45114077 original size:14 final size:14
Alignment explanation
Indices: 45114058--45114084 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
45114048 ATGAGATTTA
45114058 AATGAATTAATGTC
1 AATGAATTAATGTC
45114072 AATGAATTAATGT
1 AATGAATTAATGT
45114085 TGAATATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.15, T:0.37
Consensus pattern (14 bp):
AATGAATTAATGTC
Found at i:45118530 original size:19 final size:20
Alignment explanation
Indices: 45118502--45118542 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
45118492 ATTTTCTTTT
* *
45118502 TTTTCTTCTCTTTTTCAAAA
1 TTTTCTTCTCTCTTCCAAAA
45118522 TTTTC-TCTCTCTTCCAAAA
1 TTTTCTTCTCTCTTCCAAAA
45118541 TT
1 TT
45118543 CCCAAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.20, C:0.24, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTCTTCTCTCTTCCAAAA
Found at i:45127199 original size:18 final size:18
Alignment explanation
Indices: 45127173--45127208 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45127163 CAATTGATGT
45127173 AAGCAAGAATGAGTTATA
1 AAGCAAGAATGAGTTATA
* *
45127191 AAGCTAGAATGATTTATA
1 AAGCAAGAATGAGTTATA
45127209 GTATCGACTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (18 bp):
AAGCAAGAATGAGTTATA
Found at i:45132280 original size:11 final size:11
Alignment explanation
Indices: 45132264--45132333 Score: 67
Period size: 11 Copynumber: 6.6 Consensus size: 11
45132254 TTCTTATAAT
45132264 TAATTTTATAC
1 TAATTTTATAC
*
45132275 TAATTTT-TAAT
1 TAATTTTAT-AC
45132286 TAATTTTATAC
1 TAATTTTATAC
* *
45132297 TAATTTTTTTC
1 TAATTTTATAC
*
45132308 T--TTTTA-AT
1 TAATTTTATAC
45132316 TAATTTTATAC
1 TAATTTTATAC
45132327 TAATTTT
1 TAATTTT
45132334 TTTTTCTTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
8 1 0.02
9 4 0.09
10 6 0.13
11 34 0.74
12 1 0.02
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (11 bp):
TAATTTTATAC
Found at i:45132282 original size:12 final size:12
Alignment explanation
Indices: 45132267--45132304 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
45132257 TTATAATTAA
45132267 TTTTATACTAAT
1 TTTTATACTAAT
*
45132279 TTTTA-ATTAA-
1 TTTTATACTAAT
45132289 TTTTATACTAAT
1 TTTTATACTAAT
45132301 TTTT
1 TTTT
45132305 TTCTTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 5 0.23
11 8 0.36
12 9 0.41
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTTATACTAAT
Found at i:45132288 original size:22 final size:22
Alignment explanation
Indices: 45132260--45132304 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
45132250 ACACTTCTTA
45132260 TAATTAATTTTATACTAATTTT
1 TAATTAATTTTATACTAATTTT
45132282 TAATTAATTTTATACTAATTTT
1 TAATTAATTTTATACTAATTTT
45132304 T
1 T
45132305 TTCTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (22 bp):
TAATTAATTTTATACTAATTTT
Found at i:45132314 original size:30 final size:30
Alignment explanation
Indices: 45132278--45132336 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
45132268 TTTATACTAA
45132278 TTTTTAATTAATTTTATACTAATTTTTTTC
1 TTTTTAATTAATTTTATACTAATTTTTTTC
45132308 TTTTTAATTAATTTTATACTAATTTTTTT
1 TTTTTAATTAATTTTATACTAATTTTTTT
45132337 TTCTTTTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (30 bp):
TTTTTAATTAATTTTATACTAATTTTTTTC
Found at i:45146952 original size:48 final size:48
Alignment explanation
Indices: 45146876--45147254 Score: 349
Period size: 48 Copynumber: 7.9 Consensus size: 48
45146866 GAGGGTAAGT
* * * *
45146876 TGCCAATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA
* * * *
45146924 GGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA
* * * *
45146972 TGCCGATGTCATGTCCTAGACATGGTCTTACACTAGCTCTCATCT-GAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCG-A
* * * *
45147020 TGCGGATGCCATCTCCCAGACATGGTCTTACACTGGCTCTCATAAT-G-
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCGA
* * * *
45147067 TGGCCGACGCCATGTCCTAGACATGGTCTTACACTAGCACACA-ATCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA
* * * * *
45147115 TGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAC-A
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA
* * * * * * *
45147162 TTGTCGATGCCATGTTCCAAACATGGTCTTACAATGGCACACGAAAT-G-
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAC-ATATCGA
* *
45147210 TGGCCGATGCCATTTCCCAGACATGGTCTTACACTAGCACACATA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
45147255 ACACCCAAAT
Statistics
Matches: 275, Mismatches: 46, Indels: 21
0.80 0.13 0.06
Matches are distributed among these distances:
46 2 0.01
47 39 0.14
48 230 0.84
49 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA
Found at i:45147188 original size:143 final size:144
Alignment explanation
Indices: 45146881--45147254 Score: 488
Period size: 143 Copynumber: 2.6 Consensus size: 144
45146871 TAAGTTGCCA
* *
45146881 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACAT-GTCGAGGCCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAT-GTGGCCGATGCCATGTCCCAGAC
* * * * *
45146945 ATGGTCTTACACTAGCTCTCATCTCAATGCCGATGTCATGTCCTAGACATGGTCTTACACTAGCT
65 ATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTAGCT
***
45147010 CTCATCTGAATGCGG
130 CTCATAACAATGCGG
* * * * *
45147025 ATGCCATCTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGACGCCATGTCCTAGACA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGTGGCCGATGCCATGTCCCAGACA
*
45147090 TGGTCTTACACTAGCACACA-ATCAATGCCGATGCCATGTTCC-AAACATGGTCTTACACTGGCT
66 TGGTCTTACACTAGCACACATATCAATGCCGATGCCATG-TCCTAAACATGGTCTTACACTAGCT
*
45147153 CTCATAACATTGTC-G
130 CTCATAACAATG-CGG
* * * *
45147168 ATGCCATGTTCCAAACATGGTCTTACAATGGCACACGA-AATGTGGCCGATGCCATTTCCCAGAC
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCAC-ATAATGTGGCCGATGCCATGTCCCAGAC
45147232 ATGGTCTTACACTAGCACACATA
65 ATGGTCTTACACTAGCACACATA
45147255 ACACCCAAAT
Statistics
Matches: 199, Mismatches: 26, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
143 118 0.59
144 80 0.40
145 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (144 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGTGGCCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTAGCTC
TCATAACAATGCGG
Found at i:45150835 original size:27 final size:27
Alignment explanation
Indices: 45150775--45150826 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
45150765 TTCTTGCGAT
* *
45150775 ATAATATGAAAGAAAAGCCTTTGTGCC
1 ATAATACGAAAGAAAAGACTTTGTGCC
45150802 ATAATACGAAAGAAAAGACTTTGTG
1 ATAATACGAAAGAAAAGACTTTGTG
45150827 GTGTTATACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (27 bp):
ATAATACGAAAGAAAAGACTTTGTGCC
Found at i:45171819 original size:52 final size:51
Alignment explanation
Indices: 45171743--45171853 Score: 177
Period size: 52 Copynumber: 2.1 Consensus size: 51
45171733 AGTGTAATTG
* *
45171743 TTTTTCATGAGTAGATCTCGTGTTCGAATGTGTGACCATACCTTTTTTTCTT
1 TTTTTCATGAGCAGATCTCGTGTTCGAATGTGCGACCATACC-TTTTTTCTT
*
45171795 TTTTTCATGAGCAGATCTCGTGTTCGAATGTGCGACCATATCTTTTTTCTT
1 TTTTTCATGAGCAGATCTCGTGTTCGAATGTGCGACCATACCTTTTTTCTT
45171846 TCTTTTCA
1 T-TTTTCA
45171854 AATATGTTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
51 10 0.18
52 45 0.82
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (51 bp):
TTTTTCATGAGCAGATCTCGTGTTCGAATGTGCGACCATACCTTTTTTCTT
Found at i:45173080 original size:23 final size:23
Alignment explanation
Indices: 45173053--45173098 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
45173043 AGCATCTCGA
* *
45173053 ACTTTTATTTTATTTTAAAAATT
1 ACTTTTACTTTAATTTAAAAATT
*
45173076 ACTTTTACTTTAATTTAATAATT
1 ACTTTTACTTTAATTTAAAAATT
45173099 TCTATTTGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.59
Consensus pattern (23 bp):
ACTTTTACTTTAATTTAAAAATT
Found at i:45175532 original size:18 final size:18
Alignment explanation
Indices: 45175509--45175547 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
45175499 ATTGAGGTTG
45175509 AAAACATGAGTATTCTTC
1 AAAACATGAGTATTCTTC
45175527 AAAACATGAGTATTCTTC
1 AAAACATGAGTATTCTTC
45175545 AAA
1 AAA
45175548 TGTGCTCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (18 bp):
AAAACATGAGTATTCTTC
Found at i:45177568 original size:27 final size:27
Alignment explanation
Indices: 45177530--45177634 Score: 106
Period size: 27 Copynumber: 3.9 Consensus size: 27
45177520 GAGGAAGCGT
45177530 TCTGGTGGCTCTGCCATAAATATCTG-A
1 TCTGGTGGCTCTGCCA-AAATATCTGTA
* *
45177557 TCTGGTGGCTCT-ACACAAATATCTGTT
1 TCTGGTGGCTCTGCCA-AAATATCTGTA
* *
45177584 TCTGGTGGCTCTACCACAATATCTGTA
1 TCTGGTGGCTCTGCCAAAATATCTGTA
* * * *
45177611 TTTGGTGACTCTGTCACAATATCT
1 TCTGGTGGCTCTGCCAAAATATCT
45177635 ATTCTGGAAG
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 11 0.17
27 53 0.80
28 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCAAAATATCTGTA
Found at i:45181695 original size:13 final size:13
Alignment explanation
Indices: 45181677--45181703 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45181667 CTTGGTAGAG
45181677 AGTGGTTCACACC
1 AGTGGTTCACACC
45181690 AGTGGTTCACACC
1 AGTGGTTCACACC
45181703 A
1 A
45181704 TGAATAGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (13 bp):
AGTGGTTCACACC
Found at i:45185831 original size:31 final size:31
Alignment explanation
Indices: 45185791--45185907 Score: 182
Period size: 31 Copynumber: 3.8 Consensus size: 31
45185781 TTAGTCTTGA
*
45185791 CATA-CACTGGGCTGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
45185821 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
* * *
45185852 CATATCATTGGGCCGAAACCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
45185883 CATATCACTGGGCCGAAGCCTTTCC
1 CATATCACTGGGCCGAAGCCTTTCC
45185908 TGTAAACGGT
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 4 0.05
31 75 0.95
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:45185976 original size:42 final size:42
Alignment explanation
Indices: 45185929--45186062 Score: 232
Period size: 42 Copynumber: 3.2 Consensus size: 42
45185919 TGGCCTTTAG
*
45185929 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
* * *
45185971 GCCCATTTCAATATCATATGTAATGTCAATGAATGCATACAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
45186013 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
45186055 GCCCATTT
1 GCCCATTT
45186063 GGGAGACTAC
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 85 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:45186242 original size:25 final size:25
Alignment explanation
Indices: 45186209--45186278 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
45186199 CTCTTTTAAT
45186209 AACTAGGGCAAAGCCC-TTTCTGATA
1 AACTAGGGCAAAGCCCTTTTC-GATA
* * *
45186234 AACTGGGGCAAAGCTCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
45186259 AACTAGGGCAGAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
45186279 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 34 0.89
26 4 0.11
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:45187225 original size:27 final size:27
Alignment explanation
Indices: 45187195--45187247 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
45187185 GGGTGTTTTG
45187195 GTAAATCTACAAACCAATGGTATTTCA
1 GTAAATCTACAAACCAATGGTATTTCA
* * **
45187222 GTAATTTTGTAAACCAATGGTATTTC
1 GTAAATCTACAAACCAATGGTATTTC
45187248 TATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (27 bp):
GTAAATCTACAAACCAATGGTATTTCA
Found at i:45187253 original size:27 final size:27
Alignment explanation
Indices: 45187205--45187290 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
45187195 GTAAATCTAC
45187205 AAACCAATGGTATTTC-AGTAATTTTGT
1 AAACCAATGGTATTTCTA-TAATTTTGT
45187232 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAATGGTATTTCTATAATTTTGT
* * *
45187258 AAAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAATGGTATTTCTATAATTTTGT
45187288 AAA
1 AAA
45187291 TCAGGAGTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
26 1 0.02
27 23 0.45
28 7 0.14
29 19 0.37
30 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (27 bp):
AAACCAATGGTATTTCTATAATTTTGT
Found at i:45187400 original size:54 final size:54
Alignment explanation
Indices: 45187190--45187420 Score: 198
Period size: 54 Copynumber: 4.2 Consensus size: 54
45187180 TACAAGGGTG
* * * * *
45187190 TTTTGGTAAATCTACAAACCAATGGTATTTCAGTAATTTTGTAAACCAATGGTA
1 TTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACCAATGGTA
* * * * * *
45187244 TTTCT-ATAATTTTTAAAAAGTCAAGGGTATTTCTGTAATTTTGTAAATC-AGGAGTA
1 TTT-TGGTAA-TTTTACAAACT-AAGGGTATTTCGGTAATTTTGTAAACCAATG-GTA
* * * * *** *
45187300 TTTTCGTGATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTA
1 TTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACCAATGGTA
* *
45187354 TTTTGGTAATTTTACAAACT-AGAGGTATTTTGGTAATTTTGTAAACCAAAGGTA
1 TTTTGGTAATTTTACAAACTAAG-GGTATTTCGGTAATTTTGTAAACCAATGGTA
*
45187408 TTTTAGTAATTTT
1 TTTTGGTAATTTT
45187421 GTAAATCGAG
Statistics
Matches: 138, Mismatches: 32, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
53 2 0.01
54 84 0.61
55 20 0.14
56 32 0.23
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.42
Consensus pattern (54 bp):
TTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACCAATGGTA
Found at i:45187443 original size:27 final size:27
Alignment explanation
Indices: 45187413--45187569 Score: 233
Period size: 27 Copynumber: 5.8 Consensus size: 27
45187403 AGGTATTTTA
* * *
45187413 GTAATTTTGTAAATCGAGGGTAAAGCG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
45187440 GTAATTCTATAAATAGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
45187467 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
45187494 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
45187521 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
45187548 GTAATTTTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
45187570 CTTTGGTAAT
Statistics
Matches: 117, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:45187577 original size:27 final size:27
Alignment explanation
Indices: 45187278--45187593 Score: 163
Period size: 27 Copynumber: 11.7 Consensus size: 27
45187268 GGGTATTTCT
* * *
45187278 GTAATTTTGTAAATC-AGGAGTATTTTC
1 GTAATTTTATAAATCGAGG-GTAATTTG
* * *
45187305 GTGATTTTACAAATTGAGGGT-ATTTCG
1 GTAATTTTATAAATCGAGGGTAATTT-G
* * * *
45187332 GTAATTTCACAAA-CCAGTGGTATTTTG
1 GTAATTTTATAAATCGAG-GGTAATTTG
* * *
45187359 GTAATTTTACAAA-CTAGAGGTATTTTG
1 GTAATTTTATAAATCGAG-GGTAATTTG
* * * * * *
45187386 GTAATTTTGTAAACCAAAGGTATTTTA
1 GTAATTTTATAAATCGAGGGTAATTTG
* ***
45187413 GTAATTTTGTAAATCGAGGGTAAAGCG
1 GTAATTTTATAAATCGAGGGTAATTTG
* * ***
45187440 GTAATTCTATAAATAGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAATTTG
* * * **
45187467 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAATTTG
* ***
45187494 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAATTTG
* * ***
45187521 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAATTTG
*
45187548 GTAATTTTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAATTTG
* *
45187575 GTAATTTTACAAATTGAGG
1 GTAATTTTATAAATCGAGG
45187594 ACATTTTAGT
Statistics
Matches: 238, Mismatches: 46, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
26 5 0.02
27 225 0.95
28 8 0.03
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAATTTG
Found at i:45187577 original size:81 final size:81
Alignment explanation
Indices: 45187385--45187580 Score: 239
Period size: 81 Copynumber: 2.4 Consensus size: 81
45187375 GAGGTATTTT
* * * * * * * * *
45187385 GGTAATTTTGTAAACCAAAGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAGCGGTAATTCTAT
1 GGTAATTTTATAAATCGAGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
45187450 AAATAGAGGGTAAAAC
66 AAATAGAGGGTAAAAC
* * * ** *
45187466 GATAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
1 GGTAATTTTATAAATCGAGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
*
45187531 AAATCGAGGGTAAAAC
66 AAATAGAGGGTAAAAC
*
45187547 GGTAATTTTATAAATCGAGGGTACTTTGGTAATT
1 GGTAATTTTATAAATCGAGGGTAATTTGGTAATT
45187581 TTACAAATTG
Statistics
Matches: 93, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 93 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (81 bp):
GGTAATTTTATAAATCGAGGGTAATTTGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
AAATAGAGGGTAAAAC
Found at i:45187605 original size:27 final size:27
Alignment explanation
Indices: 45187548--45187608 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
45187538 GGGTAAAACG
* ** *
45187548 GTAATTTTATAAATCGAGGGTACTTTG
1 GTAATTTTACAAATCGAGGACACTTTA
* *
45187575 GTAATTTTACAAATTGAGGACATTTTA
1 GTAATTTTACAAATCGAGGACACTTTA
45187602 GTAATTT
1 GTAATTT
45187609 GGTAAACTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.43
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGACACTTTA
Found at i:45187607 original size:81 final size:81
Alignment explanation
Indices: 45187440--45187596 Score: 188
Period size: 81 Copynumber: 1.9 Consensus size: 81
45187430 GGGTAAAGCG
* *
45187440 GTAATTCTATAAATAGAGGGTAAAACGATAATTCTATAAATTGAGGGTAAAATGGTAATTCTATA
1 GTAATTCTATAAATAGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
** *
45187505 AATCGAGGGTAAAACG
66 AATCGAGGACAAAACA
* * * * *** *
45187521 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTACTTTGGTAATTTTACA
1 GTAATTCTATAAATAGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
*
45187586 AATTGAGGACA
66 AATCGAGGACA
45187597 TTTTAGTAAT
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (81 bp):
GTAATTCTATAAATAGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
AATCGAGGACAAAACA
Found at i:45194665 original size:20 final size:20
Alignment explanation
Indices: 45194636--45194673 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45194626 AGAAATAGAA
*
45194636 AAAAAAAGAAAGCCAAAGTG
1 AAAAAAAGAAAGACAAAGTG
*
45194656 AAAAACAGAAAGACAAAG
1 AAAAAAAGAAAGACAAAG
45194674 AGAGAAAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.68, C:0.11, G:0.18, T:0.03
Consensus pattern (20 bp):
AAAAAAAGAAAGACAAAGTG
Found at i:45197612 original size:26 final size:26
Alignment explanation
Indices: 45197593--45197642 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
45197583 ACCTAGCATC
45197593 GTCCCTCTTGGCGCAAACCTAAACTA
1 GTCCCTCTTGGCGCAAACCTAAACTA
* *
45197619 GTCTCTCTTGGCGCAAACCCAAAC
1 GTCCCTCTTGGCGCAAACCTAAAC
45197643 CATACACCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (26 bp):
GTCCCTCTTGGCGCAAACCTAAACTA
Found at i:45202201 original size:23 final size:23
Alignment explanation
Indices: 45202174--45202219 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
45202164 TGATATAATC
45202174 TTACATTATGTTCATTATAAATA
1 TTACATTATGTTCATTATAAATA
45202197 TTACATTATGTTCATTATAAATA
1 TTACATTATGTTCATTATAAATA
45202220 GGTAAGGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (23 bp):
TTACATTATGTTCATTATAAATA
Found at i:45203618 original size:43 final size:42
Alignment explanation
Indices: 45203558--45203715 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
45203548 AAGCTCGTAC
* *
45203558 AATGCCAATGCCCCAGACGTGGTCTTACATGTAATCAAATAT
1 AATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATAT
* * * *
45203600 CAATGCCACTGTCCCAGACAAGGTCTTACACGAAATCAAATAT
1 -AATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATAT
* ** *
45203643 GATTTCAATGTCCCAAACATGGTCTTACATGTAAATCTCAAAT-T
1 AATGCCAATGTCCCAGACATGGTCTTACATGT-AA--TCAAATAT
* * **
45203687 GATGCCAACGTCCCAGATGTGGTCTTACA
1 AATGCCAATGTCCCAGACATGGTCTTACA
45203716 CGAAATCACA
Statistics
Matches: 92, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
42 24 0.26
43 38 0.41
44 24 0.26
45 6 0.07
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (42 bp):
AATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATAT
Found at i:45211744 original size:25 final size:26
Alignment explanation
Indices: 45211697--45211745 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
45211687 TTAATCTCTA
* *
45211697 TTTTTAAATTTTATAATATATATTTG
1 TTTTGAAATTTTATAAGATATATTTG
45211723 TTTTGAAATTTTATAAGA-ATATT
1 TTTTGAAATTTTATAAGATATATT
45211746 AAATACAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (26 bp):
TTTTGAAATTTTATAAGATATATTTG
Found at i:45213659 original size:19 final size:19
Alignment explanation
Indices: 45213637--45213692 Score: 62
Period size: 18 Copynumber: 3.0 Consensus size: 19
45213627 ATTAAGGTTA
45213637 ATAAATATTTTATAAAAAT
1 ATAAATATTTTATAAAAAT
***
45213656 AT-AATAAAATATTAAAAAT
1 ATAAATATTTTA-TAAAAAT
45213675 ATAAATATTTTA-AAAAAT
1 ATAAATATTTTATAAAAAT
45213693 TACATATTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
18 12 0.41
19 11 0.38
20 6 0.21
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
ATAAATATTTTATAAAAAT
Found at i:45215829 original size:25 final size:26
Alignment explanation
Indices: 45215800--45215849 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
45215790 TATCATTAGA
*
45215800 ATATCTTG-TTTTTCTTATTATTTAT
1 ATATCTTGTTTTTTCCTATTATTTAT
45215825 ATATCTTGTTTTTTCCTATTATTTA
1 ATATCTTGTTTTTTCCTATTATTTA
45215850 ATCTTTATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.20, C:0.10, G:0.04, T:0.66
Consensus pattern (26 bp):
ATATCTTGTTTTTTCCTATTATTTAT
Found at i:45221099 original size:93 final size:93
Alignment explanation
Indices: 45220992--45221162 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
45220982 GCCCCTAAGT
* *
45220992 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45221057 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
45221085 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45221150 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45221163 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45221159 original size:46 final size:46
Alignment explanation
Indices: 45220987--45221159 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
45220977 AACCCGCCCC
* * *
45220987 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
45221033 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
45221081 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
45221126 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45221160 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:45221619 original size:30 final size:30
Alignment explanation
Indices: 45221585--45221644 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
45221575 ATTTAATACG
45221585 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
45221615 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
45221645 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:45228651 original size:47 final size:47
Alignment explanation
Indices: 45228537--45228706 Score: 169
Period size: 45 Copynumber: 3.7 Consensus size: 47
45228527 GCCCCTAAGT
* * * *
45228537 GAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCC--AAGC
45228583 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC-CAAGC
* *
45228630 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
45228675 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
45228707 TCAACCATCC
Statistics
Matches: 105, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 2 0.02
45 29 0.28
46 27 0.26
47 29 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAGC
Found at i:45228706 original size:92 final size:93
Alignment explanation
Indices: 45228537--45228706 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
45228527 GCCCCTAAGT
* *
45228537 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45228602 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
45228630 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45228694 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45228707 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 35 0.47
93 39 0.53
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45243270 original size:23 final size:23
Alignment explanation
Indices: 45243200--45243271 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
45243190 GATAAGCTAT
45243200 TGAGCTG-AACAGTAAGCTCTT-
1 TGAGCTGAAACAGTAAGCTCTTA
*** **
45243221 TCGAGCTGAATTGGTAAGCTCCAA
1 T-GAGCTGAAACAGTAAGCTCTTA
45243245 TGAGCTGAAACAGTAAGCTCTTA
1 TGAGCTGAAACAGTAAGCTCTTA
45243268 TGAG
1 TGAG
45243272 TGTGGTGAGT
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
21 1 0.03
22 6 0.16
23 30 0.79
24 1 0.03
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTTA
Found at i:45247993 original size:29 final size:29
Alignment explanation
Indices: 45247912--45248030 Score: 118
Period size: 29 Copynumber: 4.2 Consensus size: 29
45247902 TACATACATG
*
45247912 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* *
45247940 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCA-CTAGGCCCAATTCATATT
* * *
45247969 CTTATGGCCCACTAGGACCAATTCACATT
1 CATATGGCCCACTAGGCCCAATTCATATT
** * *
45247998 CATATATCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAATTCATATT
45248027 -ATAT
1 CATAT
45248031 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 22 0.30
29 51 0.70
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:45253927 original size:14 final size:14
Alignment explanation
Indices: 45253887--45253928 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
45253877 TGATTAGAGG
* *
45253887 TTAATTAATTTAAT
1 TTAATTAACTTAAC
45253901 TTAATTAACTTAAGC
1 TTAATTAACTTAA-C
45253916 TTAATTAA-TTAAC
1 TTAATTAACTTAAC
45253929 CATTAAGCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 1 0.04
14 16 0.64
15 8 0.32
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (14 bp):
TTAATTAACTTAAC
Found at i:45256263 original size:24 final size:24
Alignment explanation
Indices: 45256218--45256268 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
45256208 GTAGACCGGC
*
45256218 AAATCCTGAAATACGAACAAGCTG
1 AAATCCTGAAATACGAACAAGCCG
* *
45256242 AAATGCTGAAATGCTGAA-AAGCCG
1 AAATCCTGAAATAC-GAACAAGCCG
45256266 AAA
1 AAA
45256269 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 20 0.87
25 3 0.13
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.16
Consensus pattern (24 bp):
AAATCCTGAAATACGAACAAGCCG
Found at i:45256621 original size:28 final size:28
Alignment explanation
Indices: 45256482--45256608 Score: 200
Period size: 28 Copynumber: 4.5 Consensus size: 28
45256472 ATTGCATGAC
*
45256482 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
45256510 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
45256538 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
45256566 TATGAATGTGATTGGTCCCGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
45256594 TATGAATGAGATTGG
1 TATGAATGTGATTGG
45256609 CCTAAAGGGG
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 93 1.00
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:45257893 original size:17 final size:18
Alignment explanation
Indices: 45257862--45257895 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
45257852 TTTAAAGAAG
*
45257862 GGTTTTTAATGAAAACAA
1 GGTTTTCAATGAAAACAA
45257880 GGTTTTCAAT-AAAACA
1 GGTTTTCAATGAAAACA
45257896 CATCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.32
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:45259269 original size:9 final size:9
Alignment explanation
Indices: 45259252--45259283 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
45259242 TTAATGGCCT
*
45259252 TGTTATATA
1 TGTTTTATA
45259261 TGTTTTATA
1 TGTTTTATA
45259270 TGTTTTATA
1 TGTTTTATA
45259279 TGTTT
1 TGTTT
45259284 ATTAAGTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.12, T:0.66
Consensus pattern (9 bp):
TGTTTTATA
Found at i:45259552 original size:19 final size:19
Alignment explanation
Indices: 45259519--45259558 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
45259509 CTGTACATCA
45259519 ATTTCTGAAATTTTTGATG
1 ATTTCTGAAATTTTTGATG
*
45259538 ATTT-TGAAATGTTTTGTTG
1 ATTTCTGAAAT-TTTTGATG
45259557 AT
1 AT
45259559 GAATACCAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.25, C:0.03, G:0.17, T:0.55
Consensus pattern (19 bp):
ATTTCTGAAATTTTTGATG
Found at i:45260308 original size:45 final size:45
Alignment explanation
Indices: 45260204--45260357 Score: 132
Period size: 45 Copynumber: 3.3 Consensus size: 45
45260194 GAGTCACCAT
* * * *
45260204 AGCTCGTAAGAGCTTACTGTTTCAGCTCATTGGAGCTTACCGATTC
1 AGCTCGAAAGAGCTTACT-ATTCAGCTCAATAGAGCTTACCGATTC
* * *
45260250 AGCTCGAAAGAGCTTACTATTCAGCTCAATAGAGCTTATCGTTTTT
1 AGCTCGAAAGAGCTTACTATTCAGCTCAATAGAGCTTACCG-ATTC
* * *
45260296 AGCTC-AATGAGCTTACTATTTATCAGCTCATAAAGAGCTTACCGA-CC
1 AGCTCGAAAGAGCTTACTA--T-TCAGCTCA-ATAGAGCTTACCGATTC
45260343 ATGTCTCGAAAGAGC
1 A-G-CTCGAAAGAGC
45260358 ATGTATGATG
Statistics
Matches: 86, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
45 31 0.36
46 24 0.28
47 2 0.02
48 9 0.10
49 14 0.16
50 6 0.07
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (45 bp):
AGCTCGAAAGAGCTTACTATTCAGCTCAATAGAGCTTACCGATTC
Found at i:45260323 original size:24 final size:23
Alignment explanation
Indices: 45260213--45260325 Score: 78
Period size: 23 Copynumber: 4.9 Consensus size: 23
45260203 TAGCTCGTAA
* *
45260213 GAGCTTACT-GTTTCAGCTCATT
1 GAGCTTACTATTTTCAGCTCAAT
* *
45260235 GGAGCTTACCGA--TTCAGCTCGAAA
1 -GAGCTTA-CTATTTTCAGCTC-AAT
45260259 GAGCTTACTA--TTCAGCTCAAT
1 GAGCTTACTATTTTCAGCTCAAT
45260280 AGAGCTTATCGT-TTTT-AGCTCAAT
1 -GAGCTTA-C-TATTTTCAGCTCAAT
45260304 GAGCTTACTATTTATCAGCTCA
1 GAGCTTACTATTT-TCAGCTCA
45260326 TAAAGAGCTT
Statistics
Matches: 74, Mismatches: 5, Indels: 21
0.74 0.05 0.21
Matches are distributed among these distances:
21 3 0.04
22 21 0.28
23 31 0.42
24 17 0.23
25 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (23 bp):
GAGCTTACTATTTTCAGCTCAAT
Found at i:45264508 original size:52 final size:54
Alignment explanation
Indices: 45264429--45264531 Score: 165
Period size: 52 Copynumber: 1.9 Consensus size: 54
45264419 TTTTACAGAT
*
45264429 AGGTCCCTTTTAGGTGTTTTCATGAAAAATCGCC-TAAAATATGTTTATTTAAA
1 AGGTCCCTTTTAGGTGTTTTCATGAAAAATCACCATAAAATATGTTTATTTAAA
45264482 AGGT-CCTTTTAGGTGTTTTCATGAAAAATCACCTAATAAAATATGTTTAT
1 AGGTCCCTTTTAGGTGTTTTCATGAAAAATCACC--ATAAAATATGTTTAT
45264532 CTAACATCTA
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
52 28 0.61
53 4 0.09
55 14 0.30
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.40
Consensus pattern (54 bp):
AGGTCCCTTTTAGGTGTTTTCATGAAAAATCACCATAAAATATGTTTATTTAAA
Found at i:45270340 original size:17 final size:17
Alignment explanation
Indices: 45270318--45270372 Score: 69
Period size: 16 Copynumber: 3.4 Consensus size: 17
45270308 TAAACAAGTT
45270318 AGTTATACACATCATGA
1 AGTTATACACATCATGA
* *
45270335 AGTTAT-CAAATCAT-T
1 AGTTATACACATCATGA
45270350 AGTTATACACATCATGA
1 AGTTATACACATCATGA
*
45270367 AATTAT
1 AGTTAT
45270373 CAAATCAACA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
15 6 0.19
16 14 0.45
17 11 0.35
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.35
Consensus pattern (17 bp):
AGTTATACACATCATGA
Found at i:45270352 original size:32 final size:32
Alignment explanation
Indices: 45270316--45270379 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
45270306 ATTAAACAAG
*
45270316 TTAGTTATACACATCATGAAGTTATCAAATCA
1 TTAGTTATACACATCATGAAATTATCAAATCA
45270348 TTAGTTATACACATCATGAAATTATCAAATCA
1 TTAGTTATACACATCATGAAATTATCAAATCA
45270380 ACATAGATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.34
Consensus pattern (32 bp):
TTAGTTATACACATCATGAAATTATCAAATCA
Found at i:45270379 original size:16 final size:16
Alignment explanation
Indices: 45270318--45270379 Score: 63
Period size: 16 Copynumber: 3.8 Consensus size: 16
45270308 TAAACAAGTT
*
45270318 AGTTATACACATCATGA
1 AGTTAT-CAAATCATGA
*
45270335 AGTTATCAAATCAT-T
1 AGTTATCAAATCATGA
*
45270350 AGTTATACACATCATGA
1 AGTTAT-CAAATCATGA
*
45270367 AATTATCAAATCA
1 AGTTATCAAATCA
45270380 ACATAGATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
15 6 0.16
16 20 0.54
17 11 0.30
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (16 bp):
AGTTATCAAATCATGA
Found at i:45279921 original size:17 final size:19
Alignment explanation
Indices: 45279895--45279931 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
45279885 TGTAAAACCC
45279895 ATGAGTATGAACT-TTGGT
1 ATGAGTATGAACTCTTGGT
45279913 ATGAG-ATGAACTCTTGGT
1 ATGAGTATGAACTCTTGGT
45279931 A
1 A
45279932 AGAATGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (19 bp):
ATGAGTATGAACTCTTGGT
Found at i:45282941 original size:43 final size:43
Alignment explanation
Indices: 45282840--45282961 Score: 147
Period size: 43 Copynumber: 2.8 Consensus size: 43
45282830 ACAGTACTAT
*
45282840 TCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
1 TCAGG-CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATA
** * *
45282884 TCAGGCTTTAAGCCTAACAGGTTATAATGCCAGTGAGTTAATA
1 TCAGGCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATA
** * *
45282927 TTGGGCTTCGAGCCTAGCAGGC-GTAATGCCGGTGA
1 TCAGGCTTCGAGCCTAGCAGGCTATAATGCCAGTGA
45282962 ATGAATTCAG
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 11 0.17
43 49 0.75
44 5 0.08
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (43 bp):
TCAGGCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATA
Found at i:45285534 original size:18 final size:18
Alignment explanation
Indices: 45285511--45285547 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
45285501 ATATGGGTAA
45285511 ACTACACCCAAGATCACT
1 ACTACACCCAAGATCACT
45285529 ACTACACCCAAGATCACT
1 ACTACACCCAAGATCACT
45285547 A
1 A
45285548 AACTATTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.38, G:0.05, T:0.16
Consensus pattern (18 bp):
ACTACACCCAAGATCACT
Found at i:45288117 original size:13 final size:13
Alignment explanation
Indices: 45288096--45288135 Score: 57
Period size: 12 Copynumber: 3.2 Consensus size: 13
45288086 GAAAGTTCAC
*
45288096 AAATGTTTTATAA
1 AAATATTTTATAA
45288109 AAATATTTTAT-A
1 AAATATTTTATAA
45288121 AAATATTTT-TAA
1 AAATATTTTATAA
45288133 AAA
1 AAA
45288136 AAATTAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 1 0.04
12 14 0.56
13 10 0.40
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (13 bp):
AAATATTTTATAA
Found at i:45301552 original size:43 final size:41
Alignment explanation
Indices: 45301504--45301607 Score: 129
Period size: 41 Copynumber: 2.5 Consensus size: 41
45301494 CAATGTCAAC
* ** *
45301504 GTCCCAGACATGGTCTTACATGCTATCTTATATTGATGCC-ATT
1 GTCCCAGACATGGTCTTACATG-AATCAAATA-CGATGCCGA-T
*
45301547 GTCCCAGACAGGGTCTTACATGAATCAAATACGATGCCGAT
1 GTCCCAGACATGGTCTTACATGAATCAAATACGATGCCGAT
45301588 GTCCCAGACATGGTCTTACA
1 GTCCCAGACATGGTCTTACA
45301608 CGTAACCACA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
41 26 0.48
42 7 0.13
43 21 0.39
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (41 bp):
GTCCCAGACATGGTCTTACATGAATCAAATACGATGCCGAT
Found at i:45301595 original size:41 final size:43
Alignment explanation
Indices: 45301504--45301797 Score: 168
Period size: 43 Copynumber: 6.9 Consensus size: 43
45301494 CAATGTCAAC
* ** *
45301504 GTCCCAGACATGGTCTTACATGCTATCTTATATTGATGCCATT
1 GTCCCAGACATGGTCTTACATGCAATCAAATATCGATGCCATT
*
45301547 GTCCCAGACAGGGTCTTACATG-AATCAAATA-CGATGCCGA-T
1 GTCCCAGACATGGTCTTACATGCAATCAAATATCGATGCC-ATT
* * * * * **
45301588 GTCCCAGACATGGTCTTACACGTAACCACATATCAATGCCAAC
1 GTCCCAGACATGGTCTTACATGCAATCAAATATCGATGCCATT
* * * * * * * * **
45301631 ATCCCAAACGTGGACTTACACGTAATCACATATTGATGCCAAC
1 GTCCCAGACATGGTCTTACATGCAATCAAATATCGATGCCATT
* * * **
45301674 GTCCCAGACTTGGTCTTACA-CCTAATCACATATCGATGCCAGC
1 GTCCCAGACATGGTCTTACATGC-AATCAAATATCGATGCCATT
* * * * * * **
45301717 ATCCCAAACGTGGTCTTA-TTCGTAATCACATATCGATGCCAAC
1 GTCCCAGACATGGTCTTACAT-GCAATCAAATATCGATGCCATT
* * *
45301760 GTCCCAGACGTGGTCTTAC-TCGTAATCACATATCGATG
1 GTCCCAGACATGGTCTTACAT-GCAATCAAATATCGATG
45301798 TCACATATAT
Statistics
Matches: 208, Mismatches: 35, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
41 27 0.13
42 15 0.07
43 166 0.80
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGCAATCAAATATCGATGCCATT
Found at i:45301649 original size:43 final size:43
Alignment explanation
Indices: 45301558--45301797 Score: 277
Period size: 43 Copynumber: 5.6 Consensus size: 43
45301548 TCCCAGACAG
* * * ** * *
45301558 GGTCTTACATG-AATCAAATA-CGATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAATCACATATCGATGCCAACATCCCAAACGT
* *
45301599 GGTCTTACACGTAACCACATATCAATGCCAACATCCCAAACGT
1 GGTCTTACACGTAATCACATATCGATGCCAACATCCCAAACGT
* * * * *
45301642 GGACTTACACGTAATCACATATTGATGCCAACGTCCCAGACTT
1 GGTCTTACACGTAATCACATATCGATGCCAACATCCCAAACGT
* *
45301685 GGTCTTACACCTAATCACATATCGATGCCAGCATCCCAAACGT
1 GGTCTTACACGTAATCACATATCGATGCCAACATCCCAAACGT
** * *
45301728 GGTCTTATTCGTAATCACATATCGATGCCAACGTCCCAGACGT
1 GGTCTTACACGTAATCACATATCGATGCCAACATCCCAAACGT
*
45301771 GGTCTTACTCGTAATCACATATCGATG
1 GGTCTTACACGTAATCACATATCGATG
45301798 TCACATATAT
Statistics
Matches: 167, Mismatches: 30, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
41 10 0.06
42 7 0.04
43 150 0.90
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGTAATCACATATCGATGCCAACATCCCAAACGT
Found at i:45301759 original size:129 final size:126
Alignment explanation
Indices: 45301533--45301797 Score: 318
Period size: 129 Copynumber: 2.1 Consensus size: 126
45301523 ATGCTATCTT
** *
45301533 ATATTGATGCCATTGTCCCAGACAGGGTCTTACATGAATCAAATACGATGCCGATGTCCCAGACA
1 ATATTGATGCCAACGTCCCAGACAGGGTCTTACATGAATCAAATACGATGCCGA-GTCCCAAACA
45301598 TGGTCTTACACGTAACCACATATCAATGCCAACATCCCAAACGTGGACTTACACGTAATCAC
65 TGGTCTTACACGTAACCACATATCAATGCCAACATCCCAAACGTGGACTTACACGTAATCAC
** *
45301660 ATATTGATGCCAACGTCCCAGACTTGGTCTTACACCT-AATCACATATCGATGCC-AGCATCCCA
1 ATATTGATGCCAACGTCCCAGACAGGGTCTTACA--TGAATCAAATA-CGATGCCGAG--TCCCA
* ** * * * * * *
45301723 AACGTGGTCTTATTCGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACTCGTAATCA
61 AACATGGTCTTACACGTAACCACATATCAATGCCAACATCCCAAACGTGGACTTACACGTAATCA
45301788 C
126 C
*
45301789 ATATCGATG
1 ATATTGATG
45301798 TCACATATAT
Statistics
Matches: 117, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
127 31 0.26
128 9 0.08
129 77 0.66
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (126 bp):
ATATTGATGCCAACGTCCCAGACAGGGTCTTACATGAATCAAATACGATGCCGAGTCCCAAACAT
GGTCTTACACGTAACCACATATCAATGCCAACATCCCAAACGTGGACTTACACGTAATCAC
Found at i:45301794 original size:86 final size:86
Alignment explanation
Indices: 45301500--45301797 Score: 334
Period size: 86 Copynumber: 3.5 Consensus size: 86
45301490 CGTACAATGT
* ** * *** * *
45301500 CAACGTCCCAGACATGGTCTTACATGCT-ATCTTATATTGATGCCATTGTCCCAGACAG-GGTCT
1 CAACGTCCCAGACATGGTCTTACACG-TAATCACATATCGATGCCAACATCCCAAAC-GTGGACT
* *
45301563 TACATG-AATCAAATA-CGATGC
64 TACACGTAATCACATATCGATGC
* * * *
45301584 CGATGTCCCAGACATGGTCTTACACGTAACCACATATCAATGCCAACATCCCAAACGTGGACTTA
1 CAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACATCCCAAACGTGGACTTA
*
45301649 CACGTAATCACATATTGATGC
66 CACGTAATCACATATCGATGC
* * * *
45301670 CAACGTCCCAGACTTGGTCTTACACCTAATCACATATCGATGCCAGCATCCCAAACGTGGTCTTA
1 CAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACATCCCAAACGTGGACTTA
**
45301735 TTCGTAATCACATATCGATGC
66 CACGTAATCACATATCGATGC
* *
45301756 CAACGTCCCAGACGTGGTCTTACTCGTAATCACATATCGATG
1 CAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATG
45301798 TCACATATAT
Statistics
Matches: 180, Mismatches: 30, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
83 2 0.01
84 51 0.28
85 8 0.04
86 119 0.66
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (86 bp):
CAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACATCCCAAACGTGGACTTA
CACGTAATCACATATCGATGC
Found at i:45306568 original size:24 final size:24
Alignment explanation
Indices: 45306541--45306589 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
45306531 TGAATTTAAA
45306541 GTAATTAGGTATAAGGACTAAATT
1 GTAATTAGGTATAAGGACTAAATT
*
45306565 GTAATTAGGTATAATGACTAAATT
1 GTAATTAGGTATAAGGACTAAATT
45306589 G
1 G
45306590 CATATAAGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.04, G:0.20, T:0.35
Consensus pattern (24 bp):
GTAATTAGGTATAAGGACTAAATT
Found at i:45306766 original size:9 final size:9
Alignment explanation
Indices: 45306752--45306781 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
45306742 TTAATGTTTA
45306752 ATTATATAT
1 ATTATATAT
45306761 ATTATATAT
1 ATTATATAT
45306770 ATTATATTAT
1 ATTATA-TAT
45306780 AT
1 AT
45306782 AATAATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 15 0.75
10 5 0.25
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (9 bp):
ATTATATAT
Found at i:45310137 original size:8 final size:8
Alignment explanation
Indices: 45310126--45310158 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
45310116 GTGTGTGTAC
45310126 GTGAGAGA
1 GTGAGAGA
45310134 GTGAGAGA
1 GTGAGAGA
45310142 GTGAGAGA
1 GTGAGAGA
45310150 GTGAGAGA
1 GTGAGAGA
45310158 G
1 G
45310159 AGAAGTAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.52, T:0.12
Consensus pattern (8 bp):
GTGAGAGA
Found at i:45310582 original size:18 final size:18
Alignment explanation
Indices: 45310559--45310596 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
45310549 TTGAGGTTGG
45310559 GGATATGGATACGGGTAT
1 GGATATGGATACGGGTAT
* *
45310577 GGATATTGATATGGGTAT
1 GGATATGGATACGGGTAT
45310595 GG
1 GG
45310597 TGGCATGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.03, G:0.39, T:0.32
Consensus pattern (18 bp):
GGATATGGATACGGGTAT
Found at i:45311049 original size:15 final size:15
Alignment explanation
Indices: 45311029--45311065 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 15
45311019 CCTGAGGTAA
45311029 ACCACCGCCATTTTT
1 ACCACCGCCATTTTT
45311044 ACCACCG---TTTTT
1 ACCACCGCCATTTTT
45311056 ACCACCGCCA
1 ACCACCGCCA
45311066 CCTTGATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 6
0.76 0.00 0.24
Matches are distributed among these distances:
12 12 0.63
15 7 0.37
ACGTcount: A:0.22, C:0.43, G:0.08, T:0.27
Consensus pattern (15 bp):
ACCACCGCCATTTTT
Found at i:45311387 original size:9 final size:9
Alignment explanation
Indices: 45311365--45311424 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 9
45311355 GATGACGAGG
45311365 ATCATCCAAC
1 ATCAT-CAAC
*
45311375 -TCATCACC
1 ATCATCAAC
*
45311383 ATCATCAAA
1 ATCATCAAC
*
45311392 ATCATCATC
1 ATCATCAAC
*
45311401 ATCATCAAG
1 ATCATCAAC
45311410 ATCA-CAATC
1 ATCATCAA-C
45311419 ATCATC
1 ATCATC
45311425 CAAGTCATCA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
8 6 0.15
9 32 0.82
10 1 0.03
ACGTcount: A:0.40, C:0.33, G:0.02, T:0.25
Consensus pattern (9 bp):
ATCATCAAC
Found at i:45311401 original size:6 final size:6
Alignment explanation
Indices: 45311375--45311452 Score: 50
Period size: 6 Copynumber: 12.5 Consensus size: 6
45311365 ATCATCCAAC
* ** **
45311375 TCATCA CCATCA TCAAAA TCATCA TCATCA TCAAGA TCA-CAA TCATCA
1 TCATCA TCATCA TCATCA TCATCA TCATCA TCATCA TCATC-A TCATCA
* *
45311423 TCCAAGTCA TCATCG TCATAA TCATCA TCA
1 T-C-A-TCA TCATCA TCATCA TCATCA TCA
45311453 CTGAAATCTT
Statistics
Matches: 54, Mismatches: 13, Indels: 10
0.70 0.17 0.13
Matches are distributed among these distances:
6 45 0.83
7 3 0.06
8 2 0.04
9 4 0.07
ACGTcount: A:0.38, C:0.31, G:0.04, T:0.27
Consensus pattern (6 bp):
TCATCA
Found at i:45311419 original size:18 final size:18
Alignment explanation
Indices: 45311365--45311452 Score: 76
Period size: 18 Copynumber: 5.1 Consensus size: 18
45311355 GATGACGAGG
* * *
45311365 ATCATCCAACTCATCACC
1 ATCATCAAAATCATCATC
45311383 ATCATCAAAATCATCATC
1 ATCATCAAAATCATCATC
*
45311401 ATCATCAAGATCA-CAATC
1 ATCATCAAAATCATC-ATC
* *
45311419 ATCATCCAAGTCATCATC
1 ATCATCAAAATCATCATC
*
45311437 GTCAT---AATCATCATC
1 ATCATCAAAATCATCATC
45311452 A
1 A
45311453 CTGAAATCTT
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
15 9 0.16
17 1 0.02
18 47 0.81
19 1 0.02
ACGTcount: A:0.39, C:0.32, G:0.03, T:0.26
Consensus pattern (18 bp):
ATCATCAAAATCATCATC
Found at i:45311683 original size:3 final size:3
Alignment explanation
Indices: 45311675--45311712 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
45311665 CTGACCACCC
*
45311675 TTG TTG TTG TT- TTGG TTG TTG TTC TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TT-G TTG TTG TTG TTG TTG TTG TTG TT
45311713 TCCACCTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.87
4 2 0.06
ACGTcount: A:0.00, C:0.03, G:0.29, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:45312184 original size:12 final size:13
Alignment explanation
Indices: 45312163--45312191 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
45312153 CTAGAGAAAC
45312163 AAAAATGAGAGAG
1 AAAAATGAGAGAG
45312176 AAAAA-GAGAGAG
1 AAAAATGAGAGAG
45312188 AAAA
1 AAAA
45312192 TACTTGGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (13 bp):
AAAAATGAGAGAG
Done.