Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 140 of 250
Found at i:45325878 original size:23 final size:23
Alignment explanation
Indices: 45325847--45325900 Score: 90
Period size: 24 Copynumber: 2.3 Consensus size: 23
45325837 CCCCAGCTTT
*
45325847 ATCTCATTTATTTTTCACAAATG
1 ATCTTATTTATTTTTCACAAATG
45325870 ATCTTATTTTATTTTTCACAAATG
1 ATCTTA-TTTATTTTTCACAAATG
45325894 ATCTTAT
1 ATCTTAT
45325901 CCTTTCTTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 6 0.21
24 23 0.79
ACGTcount: A:0.30, C:0.15, G:0.04, T:0.52
Consensus pattern (23 bp):
ATCTTATTTATTTTTCACAAATG
Found at i:45325885 original size:24 final size:24
Alignment explanation
Indices: 45325853--45325900 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
45325843 CTTTATCTCA
45325853 TTTATTTTTCACAAATGATCTTAT
1 TTTATTTTTCACAAATGATCTTAT
45325877 TTTATTTTTCACAAATGATCTTAT
1 TTTATTTTTCACAAATGATCTTAT
45325901 CCTTTCTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.04, T:0.54
Consensus pattern (24 bp):
TTTATTTTTCACAAATGATCTTAT
Found at i:45328070 original size:15 final size:16
Alignment explanation
Indices: 45328004--45328071 Score: 63
Period size: 16 Copynumber: 4.2 Consensus size: 16
45327994 ATGCGTTCTC
*
45328004 TATAACAATTATTT-T
1 TATAATAATTATTTAT
45328019 TATAATAA-TATTTCAT
1 TATAATAATTATTT-AT
45328035 TATAATAATTAAATTTAT
1 TATAATAATT--ATTTAT
45328053 TATAA-AATTGATTT-T
1 TATAATAATT-ATTTAT
45328068 TATA
1 TATA
45328072 TTTTATTTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
14 5 0.11
15 12 0.26
16 13 0.28
17 5 0.11
18 7 0.15
19 4 0.09
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (16 bp):
TATAATAATTATTTAT
Found at i:45330963 original size:18 final size:18
Alignment explanation
Indices: 45330940--45330993 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
45330930 TAGTTTGAAG
45330940 AAAAATATTAAGCTATAAAA
1 AAAAATATTAAGC--TAAAA
* *
45330960 AAATGAAAATTAAGCAAAAA
1 AAA--AATATTAAGCTAAAA
45330980 AAAAATATTAAGCT
1 AAAAATATTAAGCT
45330994 TGATTAACTT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
18 9 0.32
20 10 0.36
22 9 0.32
ACGTcount: A:0.65, C:0.06, G:0.07, T:0.22
Consensus pattern (18 bp):
AAAAATATTAAGCTAAAA
Found at i:45331927 original size:19 final size:20
Alignment explanation
Indices: 45331886--45331927 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
45331876 TTAATCATAT
* *
45331886 TTTATTAAATGAAAATAATA
1 TTTAATAAATGAAAATAACA
*
45331906 TTTAATAAAT-AAAATTACA
1 TTTAATAAATGAAAATAACA
45331925 TTT
1 TTT
45331928 GTAATAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (20 bp):
TTTAATAAATGAAAATAACA
Found at i:45332836 original size:21 final size:22
Alignment explanation
Indices: 45332804--45332847 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
45332794 AATTTAATTT
*
45332804 TTTTTTCTTTTAACTTTCTTTC
1 TTTTTTCTTTTAACTTTCATTC
*
45332826 TTTTTTC-TTTATCTTTCATTC
1 TTTTTTCTTTTAACTTTCATTC
45332847 T
1 T
45332848 CCTCTACTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTTTCTTTTAACTTTCATTC
Found at i:45336765 original size:20 final size:17
Alignment explanation
Indices: 45336744--45336776 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
45336734 AAAAATTATT
45336744 TATTT-ATTTTTTATAG
1 TATTTAATTTTTTATAG
45336760 TATTTAATTTTTTATAG
1 TATTTAATTTTTTATAG
45336777 AATATTGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TATTTAATTTTTTATAG
Found at i:45339816 original size:33 final size:34
Alignment explanation
Indices: 45339759--45339826 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 34
45339749 TTGTAATGGC
*
45339759 AGATATTCCCAGATTTTTCATTCCAGAAGTCAAA
1 AGATATTCCCAGATTTTTCATTCCACAAGTCAAA
* *
45339793 AGATATTCCCAGA-TTTTCTTTCCACAAGTTAAA
1 AGATATTCCCAGATTTTTCATTCCACAAGTCAAA
45339826 A
1 A
45339827 AGCTCAACTG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 18 0.58
34 13 0.42
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.34
Consensus pattern (34 bp):
AGATATTCCCAGATTTTTCATTCCACAAGTCAAA
Found at i:45339828 original size:34 final size:34
Alignment explanation
Indices: 45339759--45339828 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 34
45339749 TTGTAATGGC
* *
45339759 AGATATTCCCAGATTTTTCATTCCAGAAGTCAAA
1 AGATATTCCCAGATTTTTCATTCCACAAGTAAAA
*
45339793 AGATATTCCCAGA-TTTTCTTTCCACAAGTTAAAA
1 AGATATTCCCAGATTTTTCATTCCACAAG-TAAAA
45339827 AG
1 AG
45339829 CTCAACTGGC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 13 0.41
34 19 0.59
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (34 bp):
AGATATTCCCAGATTTTTCATTCCACAAGTAAAA
Found at i:45346321 original size:21 final size:23
Alignment explanation
Indices: 45346286--45346337 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
45346276 TTCCAGATTA
45346286 TTTCTCTCCTATTTCTCCTTTCC
1 TTTCTCTCCTATTTCTCCTTTCC
* *
45346309 TTTCTC-CCT-TTTCTTCTTTCT
1 TTTCTCTCCTATTTCTCCTTTCC
*
45346330 TTTTTCTC
1 TTTCTCTC
45346338 ACAGCAGCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 15 0.60
22 4 0.16
23 6 0.24
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTCTCTCCTATTTCTCCTTTCC
Found at i:45346630 original size:17 final size:17
Alignment explanation
Indices: 45346610--45346651 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
45346600 GAGATATTAG
45346610 GAGTCTTTCTTTATTTA
1 GAGTCTTTCTTTATTTA
45346627 GAGTCTTTCTTTATTTA
1 GAGTCTTTCTTTATTTA
45346644 GAGTCTTT
1 GAGTCTTT
45346652 ATTTTGGTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.17, C:0.12, G:0.14, T:0.57
Consensus pattern (17 bp):
GAGTCTTTCTTTATTTA
Found at i:45351388 original size:33 final size:34
Alignment explanation
Indices: 45351316--45351389 Score: 132
Period size: 34 Copynumber: 2.2 Consensus size: 34
45351306 TTGAATATTT
45351316 ATAAAATTTAAATAAATTGTTGTGATAATATAAA
1 ATAAAATTTAAATAAATTGTTGTGATAATATAAA
45351350 ATAAAATTTAAATAAATTGTTGTGAT-ATATAAA
1 ATAAAATTTAAATAAATTGTTGTGATAATATAAA
*
45351383 GTAAAAT
1 ATAAAAT
45351390 AATGTCATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
33 13 0.33
34 26 0.67
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (34 bp):
ATAAAATTTAAATAAATTGTTGTGATAATATAAA
Found at i:45358133 original size:28 final size:28
Alignment explanation
Indices: 45358102--45358158 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
45358092 ATTCGATGAC
*
45358102 AATCAATATTTTTCAATAACAATCATTT
1 AATCAATATTATTCAATAACAATCATTT
* * *
45358130 AATCATTATTATTCAATAGCAGTCATTT
1 AATCAATATTATTCAATAACAATCATTT
45358158 A
1 A
45358159 TTTATTCAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.40, C:0.14, G:0.04, T:0.42
Consensus pattern (28 bp):
AATCAATATTATTCAATAACAATCATTT
Found at i:45358327 original size:6 final size:6
Alignment explanation
Indices: 45358318--45358344 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
45358308 CACCGTAAAG
45358318 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
45358345 GCGGTAGCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:45359665 original size:3 final size:3
Alignment explanation
Indices: 45359639--45359725 Score: 53
Period size: 3 Copynumber: 30.3 Consensus size: 3
45359629 TTATTTAATT
* * *
45359639 TAA TAA T-A TAA T-A TCAA TTA -AA TAA TAA TAA CAA TAA CAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
45359682 TAA TTA -AA T-A TAA -AA CT-A TAA TAA TAAA TAA TAA GAA TAA TAA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TAA TAA TAA TAA
45359725 T
1 T
45359726 TTAATATATT
Statistics
Matches: 64, Mismatches: 10, Indels: 20
0.68 0.11 0.21
Matches are distributed among these distances:
2 11 0.17
3 48 0.75
4 5 0.08
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:45359685 original size:21 final size:19
Alignment explanation
Indices: 45359659--45359725 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
45359649 ATATCAATTA
45359659 AATAATAATAACAATAACAAT
1 AATAATAATAA-AATAA-AAT
45359680 AATAAT--TAAATATAAAACT
1 AATAATAATAAA-ATAAAA-T
*
45359699 -ATAATAAT-AAATAATAAG
1 AATAATAATAAAATAA-AAT
45359717 AATAATAAT
1 AATAATAAT
45359726 TTAATATATT
Statistics
Matches: 39, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
18 12 0.31
19 20 0.51
20 1 0.03
21 6 0.15
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.28
Consensus pattern (19 bp):
AATAATAATAAAATAAAAT
Found at i:45361349 original size:25 final size:24
Alignment explanation
Indices: 45361321--45361368 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
45361311 AATGCTAGAA
45361321 AATTTCTATAACAATTGCCTTTTAC
1 AATTT-TATAACAATTGCCTTTTAC
*
45361346 AATTTTGTAACAATTGCCTTTTA
1 AATTTTATAACAATTGCCTTTTA
45361369 TAATATCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (24 bp):
AATTTTATAACAATTGCCTTTTAC
Found at i:45374657 original size:44 final size:46
Alignment explanation
Indices: 45374602--45374689 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 46
45374592 TACAACATTT
45374602 ATTCCATTCAACCAAACACA-AAAATT-CTG-TTACAGCTCTATTCC
1 ATTCCATTCAACCAAACA-ATAAAATTACTGATTACAGCTCTATTCC
* * * *
45374646 ATTCTATTCAACTAAACAATTAAATTATTGATTACAGCTCTATT
1 ATTCCATTCAACCAAACAATAAAATTACTGATTACAGCTCTATT
45374690 ATATTACAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.03
44 21 0.57
45 2 0.05
46 13 0.35
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.35
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAATAAAATTACTGATTACAGCTCTATTCC
Found at i:45376180 original size:15 final size:16
Alignment explanation
Indices: 45376153--45376182 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
45376143 TTGAAATTGT
45376153 TATAAATTTTTAAAAA
1 TATAAATTTTTAAAAA
45376169 TATAAA-TTTTAAAA
1 TATAAATTTTTAAAA
45376183 TTTTTATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TATAAATTTTTAAAAA
Found at i:45376205 original size:19 final size:19
Alignment explanation
Indices: 45376181--45376225 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
45376171 TAAATTTTAA
*
45376181 AATTTTTATAATTATTTTG
1 AATTTTTAAAATTATTTTG
*
45376200 AATTTTGAAAATTATTTTG
1 AATTTTTAAAATTATTTTG
45376219 AATTTTT
1 AATTTTT
45376226 TTGGTAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (19 bp):
AATTTTTAAAATTATTTTG
Found at i:45376933 original size:67 final size:70
Alignment explanation
Indices: 45376850--45376982 Score: 200
Period size: 70 Copynumber: 1.9 Consensus size: 70
45376840 ATAAACAATA
* **
45376850 TAATGGTTTTGCCTTTTAAC-TTA-ATGA-GTAAATATTTATCAAAACAACGTAGTTTTGCCTTT
1 TAATGGTTTTGACTTTTAACTTTAGAAAAGGTAAATATTTATCAAAACAACGTAGTTTTGCCTTT
45376912 TAATT
66 TAATT
* *
45376917 TAATGGTTTTGACTTTTAACTTTAGAAAAGGTAAATGTTTATCAAAACAGCGTAGTTTTGCCTTT
1 TAATGGTTTTGACTTTTAACTTTAGAAAAGGTAAATATTTATCAAAACAACGTAGTTTTGCCTTT
45376982 T
66 T
45376983 CTTATTCGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
67 19 0.33
68 3 0.05
69 2 0.03
70 34 0.59
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (70 bp):
TAATGGTTTTGACTTTTAACTTTAGAAAAGGTAAATATTTATCAAAACAACGTAGTTTTGCCTTT
TAATT
Found at i:45384892 original size:40 final size:40
Alignment explanation
Indices: 45384703--45384928 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
45384693 TTGAATGATG
* * * *
45384703 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
45384743 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
45384783 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
45384823 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
45384863 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45384904 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45384929 AACGAGGAGC
Statistics
Matches: 168, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 157 0.93
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45394339 original size:22 final size:21
Alignment explanation
Indices: 45394276--45394380 Score: 101
Period size: 20 Copynumber: 5.0 Consensus size: 21
45394266 ATAATGTGAC
45394276 AAAGGCTAACA-AAATGCCAT
1 AAAGGCTAACAGAAATGCCAT
*
45394296 AAAAGCTAACA-AAATGCCAT
1 AAAGGCTAACAGAAATGCCAT
*
45394316 AAAGGCTAACAGAACACGCCAT
1 AAAGGCTAACAGAA-ATGCCAT
* *
45394338 AAAGGCCAAATCAG-AATAGATCAT
1 AAAGG-CTAA-CAGAAAT-G-CCAT
45394362 AAAGGCTAACAG-AATGCCA
1 AAAGGCTAACAGAAATGCCA
45394381 CCCAGGCACC
Statistics
Matches: 71, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
20 31 0.44
21 3 0.04
22 18 0.25
23 8 0.11
24 11 0.15
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (21 bp):
AAAGGCTAACAGAAATGCCAT
Found at i:45395587 original size:18 final size:19
Alignment explanation
Indices: 45395564--45395601 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
45395554 TAAACACAAA
45395564 GAAATAAAAATA-AAAAAT
1 GAAATAAAAATATAAAAAT
*
45395582 GAAATAAACATATAAAAAT
1 GAAATAAAAATATAAAAAT
45395601 G
1 G
45395602 CTATAAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (19 bp):
GAAATAAAAATATAAAAAT
Found at i:45398870 original size:22 final size:22
Alignment explanation
Indices: 45398842--45398950 Score: 94
Period size: 22 Copynumber: 5.0 Consensus size: 22
45398832 TTGTATGGGT
* *
45398842 TCAACACTTTAATTCTCTTTGA
1 TCAACACTTCAATGCTCTTTGA
45398864 TCAACACTTCAATGCTCTTTGA
1 TCAACACTTCAATGCTCTTTGA
* *
45398886 T-AAGCATTTCAATGCTCTTTGC
1 TCAA-CACTTCAATGCTCTTTGA
* * * * *
45398908 TTAGCACTTCAGTGCTCTCTGT
1 TCAACACTTCAATGCTCTTTGA
* * *
45398930 TTAGCACTTCGATGCTCTTTG
1 TCAACACTTCAATGCTCTTTG
45398951 GTATGGTGTA
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
21 2 0.03
22 70 0.96
23 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.13, T:0.41
Consensus pattern (22 bp):
TCAACACTTCAATGCTCTTTGA
Found at i:45404387 original size:19 final size:19
Alignment explanation
Indices: 45404339--45404389 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
45404329 AGCTAATTTT
**
45404339 GGTATTGGTAAATTTCAGA
1 GGTATTGGTACCTTTCAGA
* *
45404358 GGTATCGGTACCTTTCAGG
1 GGTATTGGTACCTTTCAGA
45404377 GGTATTGGTACCT
1 GGTATTGGTACCT
45404390 ATTTCAAAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.22, C:0.14, G:0.29, T:0.35
Consensus pattern (19 bp):
GGTATTGGTACCTTTCAGA
Found at i:45406578 original size:35 final size:35
Alignment explanation
Indices: 45406532--45406602 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
45406522 TGGTAAGGAG
*
45406532 TTAACTTGCTGGAGGTTTGTGTTTGAATCTCTGCA
1 TTAACTTGCTGGAGGTTTGTGATTGAATCTCTGCA
45406567 TTAACTTGCTGGAGGTTTGTGATTGAATCTCTGCA
1 TTAACTTGCTGGAGGTTTGTGATTGAATCTCTGCA
45406602 T
1 T
45406603 GAGTAAGGGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.18, C:0.14, G:0.25, T:0.42
Consensus pattern (35 bp):
TTAACTTGCTGGAGGTTTGTGATTGAATCTCTGCA
Found at i:45409630 original size:17 final size:17
Alignment explanation
Indices: 45409608--45409640 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
45409598 AATTAAAAAT
*
45409608 TTTATGTCTTGTATTCA
1 TTTATGTCTTGCATTCA
45409625 TTTATGTCTTGCATTC
1 TTTATGTCTTGCATTC
45409641 TTCTGATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.12, T:0.58
Consensus pattern (17 bp):
TTTATGTCTTGCATTCA
Found at i:45415248 original size:92 final size:92
Alignment explanation
Indices: 45415091--45415269 Score: 295
Period size: 92 Copynumber: 1.9 Consensus size: 92
45415081 TTTGACATGA
* * * * *
45415091 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTTCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
45415156 CATGGTCTTATTCATTTCATATAACGT
66 CATGGTCTTATTCATTTCATATAACGT
* *
45415183 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
45415248 CATGGTCTTATTCATTTCATAT
66 CATGGTCTTATTCATTTCATAT
45415270 CAGAGAGTAC
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 80 1.00
ACGTcount: A:0.20, C:0.23, G:0.13, T:0.44
Consensus pattern (92 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCATTTCATATAACGT
Found at i:45415265 original size:46 final size:46
Alignment explanation
Indices: 45415086--45415265 Score: 252
Period size: 46 Copynumber: 3.9 Consensus size: 46
45415076 TTATCTTTGA
* * * * * *
45415086 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
* * *
45415132 CATGTTTCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
* * *
45415178 AACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
45415224 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC
45415266 ATATCAGAGA
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 117 1.00
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
Found at i:45417733 original size:29 final size:30
Alignment explanation
Indices: 45417676--45417743 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
45417666 TCCCCTTAAA
* * * *
45417676 ATATTTTCACTATTAGTCCTTTAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
45417706 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
45417735 AGTATTTAC
1 A-TATTTAC
45417744 TCTTGGGCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.28, C:0.18, G:0.04, T:0.50
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:45421146 original size:29 final size:29
Alignment explanation
Indices: 45421108--45421164 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
45421098 ATGGAAGAGG
* *
45421108 TGAAGAACTTGTTCGTTGAGAGTTCGTGA
1 TGAAGAACTTGTTCATTGAGAATTCGTGA
45421137 TGAAGAACTTGTTCATTGAGAATTCGTG
1 TGAAGAACTTGTTCATTGAGAATTCGTG
45421165 TCAATGTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (29 bp):
TGAAGAACTTGTTCATTGAGAATTCGTGA
Found at i:45422226 original size:20 final size:20
Alignment explanation
Indices: 45422188--45422228 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
45422178 AGTAAAATAT
*
45422188 TAAAGAAAATATTTTTTTAA
1 TAAAGAAAATATTTATTTAA
45422208 TAAA-AAAATATTATATTTAA
1 TAAAGAAAATATT-TATTTAA
45422228 T
1 T
45422229 TCTAGAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
TAAAGAAAATATTTATTTAA
Found at i:45422946 original size:20 final size:20
Alignment explanation
Indices: 45422908--45422948 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
45422898 AGTAAAATAT
*
45422908 TAAAGAAAATATTTTTTTAA
1 TAAAGAAAATATTTATTTAA
45422928 TAAA-AAAATATTATATTTAA
1 TAAAGAAAATATT-TATTTAA
45422948 T
1 T
45422949 TCTAGAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
TAAAGAAAATATTTATTTAA
Found at i:45423191 original size:720 final size:720
Alignment explanation
Indices: 45421813--45423258 Score: 2883
Period size: 720 Copynumber: 2.0 Consensus size: 720
45421803 TACCAATTTT
45421813 ATATATTATAACCCTAATTAGGTTGGACATCATTATTATTATATCATAATTGTATAATAAGTATT
1 ATATATTATAACCCTAATTAGGTTGGACATCATTATTATTATATCATAATTGTATAATAAGTATT
45421878 ATATAACAATTGATATATTATATGTAGTTTAAGCTATATGTATACTATTTTTATAATATAATGTG
66 ATATAACAATTGATATATTATATGTAGTTTAAGCTATATGTATACTATTTTTATAATATAATGTG
45421943 TACTAAATATAATAATTTGACGTTGTAAAATAAATTCATATTATAATATTATTTTAATCATAAAA
131 TACTAAATATAATAATTTGACGTTGTAAAATAAATTCATATTATAATATTATTTTAATCATAAAA
45422008 ATATTAATTAATGTTTTTTTAAATAATATAACTGAGTTGATCAAATAATAATAATAAAAGAAAAA
196 ATATTAATTAATGTTTTTTTAAATAATATAACTGAGTTGATCAAATAATAATAATAAAAGAAAAA
45422073 AGATAAAGGCAAATTTAGGGATTCCAATAATATTATCTTATTGTTTAATTAAATTTACATATACA
261 AGATAAAGGCAAATTTAGGGATTCCAATAATATTATCTTATTGTTTAATTAAATTTACATATACA
45422138 AAAGAATATGAGTTAGGATCAACTAAATCTGATTTAAGAGAGTAAAATATTAAAGAAAATATTTT
326 AAAGAATATGAGTTAGGATCAACTAAATCTGATTTAAGAGAGTAAAATATTAAAGAAAATATTTT
45422203 TTTAATAAAAAAATATTATATTTAATTCTAGAAATTTTTTTTATTTTGTTTTTATACATTACTTT
391 TTTAATAAAAAAATATTATATTTAATTCTAGAAATTTTTTTTATTTTGTTTTTATACATTACTTT
45422268 ATTAATTTGTAAAAATTATAATCAATGTTTAAAAGACAAATATTGATGATTAAAATATGGCTTTA
456 ATTAATTTGTAAAAATTATAATCAATGTTTAAAAGACAAATATTGATGATTAAAATATGGCTTTA
45422333 TATAAAGAGATTTTGAATTCAATCTATATTAGAAGTACATAATATATAACTATAATCTATTCCGA
521 TATAAAGAGATTTTGAATTCAATCTATATTAGAAGTACATAATATATAACTATAATCTATTCCGA
45422398 ATTCTCAATTGATAATAATTTTAACATTTGAAATCAAATATTATCCTAATATTTAATATTCGAAT
586 ATTCTCAATTGATAATAATTTTAACATTTGAAATCAAATATTATCCTAATATTTAATATTCGAAT
45422463 TCACAAAATTCAAATTGAATATTCACAAATATCTAAATCCCCCTAATTGGATCTCTTAAACATAT
651 TCACAAAATTCAAATTGAATATTCACAAATATCTAAATCCCCCTAATTGGATCTCTTAAACATAT
45422528 GACAA
716 GACAA
45422533 ATATATTATAACCCTAATTAGGTTGGACATCATTATTATTATATCATAATTGTATAATAAGTATT
1 ATATATTATAACCCTAATTAGGTTGGACATCATTATTATTATATCATAATTGTATAATAAGTATT
45422598 ATATAACAATTGATATATTATATGTAGTTTAAGCTATATGTATACTATTTTTATAATATAATGTG
66 ATATAACAATTGATATATTATATGTAGTTTAAGCTATATGTATACTATTTTTATAATATAATGTG
45422663 TACTAAATATAATAATTTGACGTTGTAAAATAAATTCATATTATAATATTATTTTAATCATAAAA
131 TACTAAATATAATAATTTGACGTTGTAAAATAAATTCATATTATAATATTATTTTAATCATAAAA
45422728 ATATTAATTAATGTTTTTTTAAATAATATAACTGAGTTGATCAAATAATAATAATAAAAGAAAAA
196 ATATTAATTAATGTTTTTTTAAATAATATAACTGAGTTGATCAAATAATAATAATAAAAGAAAAA
45422793 AGATAAAGGCAAATTTAGGGATTCCAATAATATTATCTTATTGTTTAATTAAATTTACATATACA
261 AGATAAAGGCAAATTTAGGGATTCCAATAATATTATCTTATTGTTTAATTAAATTTACATATACA
45422858 AAAGAATATGAGTTAGGATCAACTAAATCTGATTTAAGAGAGTAAAATATTAAAGAAAATATTTT
326 AAAGAATATGAGTTAGGATCAACTAAATCTGATTTAAGAGAGTAAAATATTAAAGAAAATATTTT
45422923 TTTAATAAAAAAATATTATATTTAATTCTAGAAATTTTTTTTATTTTGTTTTTATACATTACTTT
391 TTTAATAAAAAAATATTATATTTAATTCTAGAAATTTTTTTTATTTTGTTTTTATACATTACTTT
*
45422988 ATTAATTTGTACAAATTATAATCAATGTTTAAAAGACAAATATTGATGATTAAAATATGGCTTTA
456 ATTAATTTGTAAAAATTATAATCAATGTTTAAAAGACAAATATTGATGATTAAAATATGGCTTTA
45423053 TATAAAGAGATTTTGAATTCAATCTATATTAGAAGTACATAATATATAACTATAATCTATTCCGA
521 TATAAAGAGATTTTGAATTCAATCTATATTAGAAGTACATAATATATAACTATAATCTATTCCGA
45423118 ATTCTCAATTGATAATAATTTTAACATTTGAAATCAAATATTATCCTAATATTTAATATTCGAAT
586 ATTCTCAATTGATAATAATTTTAACATTTGAAATCAAATATTATCCTAATATTTAATATTCGAAT
45423183 TCACAAAATTCAAATTGAATATTCACAAATATCTAAATCCCCCTAATTGGATCTCTTAAACATAT
651 TCACAAAATTCAAATTGAATATTCACAAATATCTAAATCCCCCTAATTGGATCTCTTAAACATAT
45423248 GACAA
716 GACAA
45423253 ATATAT
1 ATATAT
45423259 CTTATCCAAA
Statistics
Matches: 725, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
720 725 1.00
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.40
Consensus pattern (720 bp):
ATATATTATAACCCTAATTAGGTTGGACATCATTATTATTATATCATAATTGTATAATAAGTATT
ATATAACAATTGATATATTATATGTAGTTTAAGCTATATGTATACTATTTTTATAATATAATGTG
TACTAAATATAATAATTTGACGTTGTAAAATAAATTCATATTATAATATTATTTTAATCATAAAA
ATATTAATTAATGTTTTTTTAAATAATATAACTGAGTTGATCAAATAATAATAATAAAAGAAAAA
AGATAAAGGCAAATTTAGGGATTCCAATAATATTATCTTATTGTTTAATTAAATTTACATATACA
AAAGAATATGAGTTAGGATCAACTAAATCTGATTTAAGAGAGTAAAATATTAAAGAAAATATTTT
TTTAATAAAAAAATATTATATTTAATTCTAGAAATTTTTTTTATTTTGTTTTTATACATTACTTT
ATTAATTTGTAAAAATTATAATCAATGTTTAAAAGACAAATATTGATGATTAAAATATGGCTTTA
TATAAAGAGATTTTGAATTCAATCTATATTAGAAGTACATAATATATAACTATAATCTATTCCGA
ATTCTCAATTGATAATAATTTTAACATTTGAAATCAAATATTATCCTAATATTTAATATTCGAAT
TCACAAAATTCAAATTGAATATTCACAAATATCTAAATCCCCCTAATTGGATCTCTTAAACATAT
GACAA
Found at i:45423765 original size:20 final size:20
Alignment explanation
Indices: 45423740--45423782 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
45423730 TTTTATAGGA
**
45423740 TAATATAACGTTAAAATAAT
1 TAATATAAAATTAAAATAAT
*
45423760 TAATATAAAATTGAAATAAT
1 TAATATAAAATTAAAATAAT
45423780 TAA
1 TAA
45423783 AAATATTCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (20 bp):
TAATATAAAATTAAAATAAT
Found at i:45428629 original size:93 final size:93
Alignment explanation
Indices: 45428470--45428661 Score: 366
Period size: 93 Copynumber: 2.1 Consensus size: 93
45428460 GTATAATGCA
*
45428470 CTTTTGTGGTGGATGCAATAATCTTTAGATATTTTATTAATTTGGAAGTTTATGAAAATTTTGAC
1 CTTTTTTGGTGGATGCAATAATCTTTAGATATTTTATTAATTTGGAAGTTTATGAAAATTTTGAC
45428535 ATGAGCCTAATGATTATTGTTGTTACAG
66 ATGAGCCTAATGATTATTGTTGTTACAG
*
45428563 CTTTTTTGGTGGATGCAATAGTCTTTAGATATTTTATTAATTTGGAAGTTTATGAAAATTTTGAC
1 CTTTTTTGGTGGATGCAATAATCTTTAGATATTTTATTAATTTGGAAGTTTATGAAAATTTTGAC
45428628 ATGAGCCTAATGATTATTGTTGTTACAG
66 ATGAGCCTAATGATTATTGTTGTTACAG
45428656 CTTTTT
1 CTTTTT
45428662 ATATGAACCA
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 97 1.00
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.46
Consensus pattern (93 bp):
CTTTTTTGGTGGATGCAATAATCTTTAGATATTTTATTAATTTGGAAGTTTATGAAAATTTTGAC
ATGAGCCTAATGATTATTGTTGTTACAG
Found at i:45430450 original size:43 final size:43
Alignment explanation
Indices: 45430368--45430450 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
45430358 ATCTGCAAAT
* * *
45430368 TGCTATGTATCTACAGCCAAAGGCAGATTCCATCTGCGGGTAC
1 TGCTATGTATCCACAACCAAAGGCAGATTCCATCGGCGGGTAC
**
45430411 TGCTATGTATCCACAACCAAAGGTTGATTCCAAT-GGCGGG
1 TGCTATGTATCCACAACCAAAGGCAGATTCC-ATCGGCGGG
45430451 GTTTATGCTG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 32 0.94
44 2 0.06
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (43 bp):
TGCTATGTATCCACAACCAAAGGCAGATTCCATCGGCGGGTAC
Found at i:45450138 original size:15 final size:15
Alignment explanation
Indices: 45450091--45450138 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
45450081 AACATCATGT
45450091 AAAAGAAAAG-GAGA
1 AAAAGAAAAGAGAGA
* * *
45450105 AAAGGCAAAAGAAAAA
1 AAAAG-AAAAGAGAGA
45450121 AAAAGAAAAGAGAGA
1 AAAAGAAAAGAGAGA
45450136 AAA
1 AAA
45450139 GAGGCAAGTA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
14 4 0.15
15 16 0.62
16 6 0.23
ACGTcount: A:0.75, C:0.02, G:0.23, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAGAGAGA
Found at i:45450243 original size:6 final size:6
Alignment explanation
Indices: 45450234--45450260 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
45450224 AAAAAGAAAA
45450234 TGAGAT TGAGAT TGAGAT TGAGAT TGA
1 TGAGAT TGAGAT TGAGAT TGAGAT TGA
45450261 AAAAGAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (6 bp):
TGAGAT
Found at i:45450271 original size:18 final size:18
Alignment explanation
Indices: 45450223--45450272 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
45450213 AAAAGAAAAC
*
45450223 GAAAAAGAAAATGAGATT
1 GAAAAAGAAATTGAGATT
* ** *
45450241 GAGATTGAGATTGAGATT
1 GAAAAAGAAATTGAGATT
45450259 GAAAAAGAAATTGA
1 GAAAAAGAAATTGA
45450273 AAAAGAGTTT
Statistics
Matches: 23, Mismatches: 9, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.26, T:0.22
Consensus pattern (18 bp):
GAAAAAGAAATTGAGATT
Found at i:45452131 original size:23 final size:23
Alignment explanation
Indices: 45452103--45452149 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
45452093 AGTATGTTTG
45452103 CTTTGCCCAATTGAGATTATTGC
1 CTTTGCCCAATTGAGATTATTGC
45452126 CTTTGCCCAATTGAGATTATTGC
1 CTTTGCCCAATTGAGATTATTGC
45452149 C
1 C
45452150 ATATGATCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (23 bp):
CTTTGCCCAATTGAGATTATTGC
Found at i:45453123 original size:48 final size:48
Alignment explanation
Indices: 45453069--45453288 Score: 185
Period size: 48 Copynumber: 4.6 Consensus size: 48
45453059 TGAGATCCCA
* *
45453069 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGATCTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGATCTAG
* * * * * *
45453117 TATAAGACTATGTTTGGGACATGGCATCGGCATTGATATGCG-TGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGAT-CTAG
* * * * * *
45453165 TGTAATACCATGTTTGGGACATGGCATTGGCCTCGATG-TGTGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GATGAGATCTAG
* * * * * * *
45453213 TGTAAGACCATATCTAGAACATGGCATCGGTATCGATATGTA-ATTTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATG-AGATCTAG
* *
45453261 TGTAAGACCATGTCTAGGACATAGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
45453289 ATTATGGGAC
Statistics
Matches: 134, Mismatches: 33, Indels: 10
0.76 0.19 0.06
Matches are distributed among these distances:
47 1 0.01
48 133 0.99
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGATCTAG
Found at i:45453235 original size:96 final size:96
Alignment explanation
Indices: 45453069--45453287 Score: 226
Period size: 96 Copynumber: 2.3 Consensus size: 96
45453059 TGAGATCCCA
* * * * * *
45453069 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGATCTCGTATAAGACTATGTTTGG
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGAGCTAGTATAAGACCATATCTAG
* *
45453134 GACATGGCATCGGCATTGATATGCGTGCTAG
66 AACATGGCATCGGCATCGATATGCGTGCTAG
* * * * *
45453165 TGTAATACCATGTTTGGGACATGGCATTGGCCTCGATG-TGTGAGCTAGTGTAAGACCATATCTA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-GATGAGAGCTAGTATAAGACCATATCTA
* ** * *
45453229 GAACATGGCATCGGTATCGATATGTAAT-TTCG
65 GAACATGGCATCGGCATCGATATG-CGTGCTAG
* *
45453261 TGTAAGACCATGTCTAGGACATAGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
45453288 CATTATGGGA
Statistics
Matches: 99, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
96 97 0.98
97 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGAGCTAGTATAAGACCATATCTAG
AACATGGCATCGGCATCGATATGCGTGCTAG
Found at i:45462885 original size:80 final size:79
Alignment explanation
Indices: 45462661--45462911 Score: 269
Period size: 79 Copynumber: 3.2 Consensus size: 79
45462651 ATGTCTGGGC
* * * * * * *
45462661 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTTTGTG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* *
45462724 AGATACTAATTCCGGGC
64 AG-TACTAAATCCGGGT
*
45462741 TAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
45462804 GTTACTAAATCCGGGT
65 G-TACTAAATCCGGGT
* **
45462820 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
45462885 TAGCTATATCC-GGT
66 TA-CTAAATCCGGGT
* *
45462899 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
45462912 TACGTGATTT
Statistics
Matches: 147, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
79 72 0.49
80 71 0.48
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TACTAAATCCGGGT
Found at i:45462892 original size:40 final size:40
Alignment explanation
Indices: 45462657--45462878 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
45462647 AATGATGTCT
* * * *
45462657 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
* * * * *
45462697 GGACTAAGAT-CCGAAGGCATTTTTGTGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
45462737 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
45462776 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
45462816 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
45462856 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
45462879 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.21
40 119 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:45462900 original size:119 final size:119
Alignment explanation
Indices: 45462661--45462911 Score: 278
Period size: 119 Copynumber: 2.1 Consensus size: 119
45462651 ATGTCTGGGC
* * *
45462661 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTTTGTGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
* **
45462726 ATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
66 ATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGT
* * * **
45462780 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
* * *
45462843 AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGT
64 AGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGT
* *
45462899 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
45462912 TACGTGATTT
Statistics
Matches: 111, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 76 0.68
120 32 0.29
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
ATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGT
Found at i:45465785 original size:21 final size:20
Alignment explanation
Indices: 45465758--45465806 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
45465748 AATAGAAATT
*
45465758 ATGAATGAC-AGGAAATTGTC
1 ATGAATGACAAGG-AATTGAC
45465778 AGTGAATGACAAGGAATTGAC
1 A-TGAATGACAAGGAATTGAC
45465799 ATGAATGA
1 ATGAATGA
45465807 TTCTATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 8 0.31
21 15 0.58
22 3 0.12
ACGTcount: A:0.43, C:0.08, G:0.27, T:0.22
Consensus pattern (20 bp):
ATGAATGACAAGGAATTGAC
Found at i:45472796 original size:19 final size:20
Alignment explanation
Indices: 45472751--45472820 Score: 108
Period size: 19 Copynumber: 3.5 Consensus size: 20
45472741 TAGCTCTTAT
45472751 GAGCTTCTGTTCAGCTCTTAC
1 GAGCTTCTGTTCAGCTCTT-C
45472772 GAGCTTCTGTTCAGCTCTT-
1 GAGCTTCTGTTCAGCTCTTC
*
45472791 GAGCTTCTGTTTAGCT-TTC
1 GAGCTTCTGTTCAGCTCTTC
45472810 GAGCTTCTGTT
1 GAGCTTCTGTT
45472821 GGCATATTCG
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
18 2 0.04
19 26 0.55
21 19 0.40
ACGTcount: A:0.11, C:0.24, G:0.21, T:0.43
Consensus pattern (20 bp):
GAGCTTCTGTTCAGCTCTTC
Found at i:45473018 original size:21 final size:19
Alignment explanation
Indices: 45472992--45473039 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 19
45472982 AATAGATGTT
*
45472992 ATGAATGACAGGAAATTGTC
1 ATGAATGACAGG-AATTGAC
45473012 AATGAATGACAGGAATTGAC
1 -ATGAATGACAGGAATTGAC
45473032 ATGAATGA
1 ATGAATGA
45473040 TTTTATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 8 0.31
20 6 0.23
21 12 0.46
ACGTcount: A:0.44, C:0.08, G:0.25, T:0.23
Consensus pattern (19 bp):
ATGAATGACAGGAATTGAC
Found at i:45475514 original size:46 final size:46
Alignment explanation
Indices: 45475447--45475621 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
45475437 TGTAACCCGC
* *
45475447 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGTAT
* * *
45475493 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGT-T
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--GCGTTCGTAT
* * * *
45475539 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGTAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGTAT
* *
45475586 CCATAAGTGAACTCGGACTCAACTCAACGAATTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
45475622 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
45 3 0.03
46 65 0.62
47 33 0.31
48 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGTAT
Found at i:45475563 original size:93 final size:93
Alignment explanation
Indices: 45475454--45475626 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
45475444 CGCCCATAAG
* *
45475454 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCAGACGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
*
45475519 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAATTCGGATGCCTAGTTACATTTCA
* *
45475547 CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCAGACGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
45475612 ACGAATTCGGATGCC
66 ACGAATTCGGATGCC
45475627 CAAATATCCT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCAGACGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
ACGAATTCGGATGCCTAGTTACATTTCA
Found at i:45475724 original size:38 final size:38
Alignment explanation
Indices: 45475682--45475754 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
45475672 TCGTACTCCT
* *
45475682 TTACCATTCTCCTTGGATTACTAATGACGATACTTTGG
1 TTACCATTCTCCTTGGAATACCAATGACGATACTTTGG
45475720 TTACCATTCTCCTTGGAATACCAATGACGATACTT
1 TTACCATTCTCCTTGGAATACCAATGACGATACTT
45475755 CGGTAGTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (38 bp):
TTACCATTCTCCTTGGAATACCAATGACGATACTTTGG
Found at i:45482403 original size:25 final size:25
Alignment explanation
Indices: 45482369--45482430 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
45482359 ATTGACTCCT
*
45482369 TTAAAAATTATAAAGATATAAACTA
1 TTAAAAATTATAAAAATATAAACTA
45482394 TTAAAAATTATAAAAATATAAACTA
1 TTAAAAATTATAAAAATATAAACTA
45482419 TTAAAAATTATA
1 TTAAAAATTATA
45482431 CTTTGCCACT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (25 bp):
TTAAAAATTATAAAAATATAAACTA
Found at i:45485514 original size:9 final size:9
Alignment explanation
Indices: 45485497--45485533 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
45485487 TGAGTTTTCG
45485497 AATTCGAAT
1 AATTCGAAT
*
45485506 AACTCGAAT
1 AATTCGAAT
45485515 AATTCGAAT
1 AATTCGAAT
45485524 AATTCGAAT
1 AATTCGAAT
45485533 A
1 A
45485534 TCAAACAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:45485953 original size:19 final size:20
Alignment explanation
Indices: 45485917--45485954 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
45485907 TTATTGCCCA
* *
45485917 AAACTTTTTATTTTTCACCT
1 AAACTTTTTACTTCTCACCT
45485937 AAAC-TTTTACTTCTCACC
1 AAACTTTTTACTTCTCACC
45485955 CTTTATTCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.47
Consensus pattern (20 bp):
AAACTTTTTACTTCTCACCT
Found at i:45497802 original size:41 final size:41
Alignment explanation
Indices: 45497757--45497841 Score: 134
Period size: 41 Copynumber: 2.1 Consensus size: 41
45497747 CTTTGTCTTC
*
45497757 TTTGTAACATTTCCAAATTCGGCCATAACGTCTAAGCTGGG
1 TTTGTAACATTTCCAAATTCGGCCATAACGTCTAAGCCGGG
* * *
45497798 TTTGTAACATTTTCAAATTCGGCCATAATGTCTAGGCCGGG
1 TTTGTAACATTTCCAAATTCGGCCATAACGTCTAAGCCGGG
45497839 TTT
1 TTT
45497842 AAGGTGTTAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (41 bp):
TTTGTAACATTTCCAAATTCGGCCATAACGTCTAAGCCGGG
Found at i:45502022 original size:3 final size:3
Alignment explanation
Indices: 45502014--45502039 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
45502004 AAATGGATAG
45502014 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
45502040 ACTATATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:45504799 original size:493 final size:493
Alignment explanation
Indices: 45503873--45504821 Score: 1531
Period size: 493 Copynumber: 1.9 Consensus size: 493
45503863 TCAAATGTTT
*
45503873 TGTAACACCCCAAACCCGGCCTAGACGTTATGACAGAATCAAACTGCGTCACATGAGAGTACTTT
1 TGTAACACCCCAAACCCGGCCTAGACGTTATGACAGAATCAAACGGCGTCACATGAGAGTACTTT
* * *
45503938 TAGGGAACCCTTTTAGAAAACCTTATCAAGTGAAAAATCGTGAAGTTTATTATCTTTACTTAAGT
66 TAGGAAACCCTTTTAAAAAACCTTATCAAGTGAAAAATCGTGAAGTTTATTATCTTTACTTAAAT
* * * * * *
45504003 TGGAAAATCTCTCTACCAATTATTACGTGAAAACATTTAATTAACGCGGAAGCTAAACCTTCGTT
131 CGGAAAATCTCTATACCAATTATTACGTGAAAACATTTAATTAACGCGAAAGCTAAAACATCATT
*
45504068 AATTCATAAATAAAAAATTTAACAATTTAAAATCCCAAAATAAACCCAAGAATAGTTTGAGCCCA
196 AATTCATAAATAAAAAATTTAACAATTTAAAATCCCAAAATAAACCCAAGAATAGTTCGAGCCCA
*
45504133 AATACATATTAATCCCAAAACATATATTTAAGTAAAGCAGGCAAAATAAAGTGTTACACAAAAAT
261 AATACATATTAATCCCAAAACATATATTTAAGTAAAGCAGGCAAAATAAAGTGTGACACAAAAAT
* * *
45504198 CCATAAATGTCTACCAGTGGTTACCATCGAGCCCTCCGTAACACCGATCTATCTACTGCTAAGGA
326 CCATAAATGTCTACCAGTGGTCACCATCGAGCCCTCCATAACACCGATCCATCTACTGCTAAGGA
*
45504263 TTACCTGACAAACAAAATAAACAAAGGGGTGAGTTTTCGCAAACTTAGTGTGTACATCCCCACAA
391 TTACCTGACAAACAAAATAAACAAAGGGGTGAGTTTTCGCAAACTCAGTGTGTACATCCCCACAA
45504328 ATAGTCGAGTTTTGAACTCGGGCTCTGATACCACTAAA
456 ATAGTCGAGTTTTGAACTCGGGCTCTGATACCACTAAA
* ** * * *** *
45504366 TGTAACACCCTAAACTTGGCCTAGACGTTATGGCCGAATCTGGCGGCGTCACATTAGAGTACTTT
1 TGTAACACCCCAAACCCGGCCTAGACGTTATGACAGAATCAAACGGCGTCACATGAGAGTACTTT
**
45504431 TAGGAAACCCTTTTAAAAAACCTTATCAAGTGAAAAATCGTTCAGTTTATTATCTTTACTTAAAT
66 TAGGAAACCCTTTTAAAAAACCTTATCAAGTGAAAAATCGTGAAGTTTATTATCTTTACTTAAAT
* * * * *
45504496 CGGGAAATCTTTATTCCAATTATTATGTGAAAACATTTCATTAACGCGAAAGCTAAAACATCATT
131 CGGAAAATCTCTATACCAATTATTACGTGAAAACATTTAATTAACGCGAAAGCTAAAACATCATT
45504561 AATTCATAAATAAAAAATTTAACAATTTAAAATCCCAAAATAAACCCAAGAATAGTTCGAGCCCA
196 AATTCATAAATAAAAAATTTAACAATTTAAAATCCCAAAATAAACCCAAGAATAGTTCGAGCCCA
*
45504626 AATACATATTAATCCCAAAACATATATTTAAGTAAAGCATGCAAAATAAAGTGTGACACAAAAAT
261 AATACATATTAATCCCAAAACATATATTTAAGTAAAGCAGGCAAAATAAAGTGTGACACAAAAAT
* * * * *
45504691 CCGA-AAATGTCTACCAGTGGTCACCATCGAGTCCTCTATCACACTGATCCATCTACTGCTGAGG
326 CC-ATAAATGTCTACCAGTGGTCACCATCGAGCCCTCCATAACACCGATCCATCTACTGCTAAGG
*
45504755 ATTATCTGACAAACAAAATAAACAAAGGGGTGAGTTTTCGCAAACTCAGTGTGTACATCCCCACA
390 ATTACCTGACAAACAAAATAAACAAAGGGGTGAGTTTTCGCAAACTCAGTGTGTACATCCCCACA
45504820 AA
455 AA
45504822 CAGCATGCAT
Statistics
Matches: 416, Mismatches: 39, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
493 415 1.00
494 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (493 bp):
TGTAACACCCCAAACCCGGCCTAGACGTTATGACAGAATCAAACGGCGTCACATGAGAGTACTTT
TAGGAAACCCTTTTAAAAAACCTTATCAAGTGAAAAATCGTGAAGTTTATTATCTTTACTTAAAT
CGGAAAATCTCTATACCAATTATTACGTGAAAACATTTAATTAACGCGAAAGCTAAAACATCATT
AATTCATAAATAAAAAATTTAACAATTTAAAATCCCAAAATAAACCCAAGAATAGTTCGAGCCCA
AATACATATTAATCCCAAAACATATATTTAAGTAAAGCAGGCAAAATAAAGTGTGACACAAAAAT
CCATAAATGTCTACCAGTGGTCACCATCGAGCCCTCCATAACACCGATCCATCTACTGCTAAGGA
TTACCTGACAAACAAAATAAACAAAGGGGTGAGTTTTCGCAAACTCAGTGTGTACATCCCCACAA
ATAGTCGAGTTTTGAACTCGGGCTCTGATACCACTAAA
Found at i:45505034 original size:40 final size:39
Alignment explanation
Indices: 45504942--45505040 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 39
45504932 ACTATCTCCG
* *
45504942 TCCAACCCAACACA-CTATGTGGGGATAAAATCGACCCA
1 TCCAACCCTACACACCTATATGGGGATAAAATCGACCCA
* ** * *
45504980 CCCATTCCTGCACACCGTATATGGGGATATAATCGACCCA
1 TCCAACCCTACACACC-TATATGGGGATAAAATCGACCCA
45505020 TCCAACCCTACACACCATATA
1 TCCAACCCTACACACC-TATA
45505041 GTACCGTATC
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
38 9 0.19
39 1 0.02
40 37 0.79
ACGTcount: A:0.33, C:0.34, G:0.13, T:0.19
Consensus pattern (39 bp):
TCCAACCCTACACACCTATATGGGGATAAAATCGACCCA
Found at i:45513024 original size:30 final size:30
Alignment explanation
Indices: 45512990--45513050 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
45512980 TCCTTAACTC
45512990 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
45513020 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
45513050 A
1 A
45513051 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:45522384 original size:24 final size:25
Alignment explanation
Indices: 45522351--45522398 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
45522341 TAAGAAAGTG
45522351 GTTACAAGAAGATAAAAGGTGAAAT
1 GTTACAAGAAGATAAAAGGTGAAAT
*
45522376 GTTA-AAGAAGTTAAAAGGTGAAA
1 GTTACAAGAAGATAAAAGGTGAAA
45522399 GGTAGAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.52, C:0.02, G:0.25, T:0.21
Consensus pattern (25 bp):
GTTACAAGAAGATAAAAGGTGAAAT
Found at i:45531318 original size:18 final size:18
Alignment explanation
Indices: 45531286--45531321 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45531276 ATTTGTGATC
*
45531286 AAAATTGAAGGTGAAAGT
1 AAAATTGAAAGTGAAAGT
*
45531304 AAAATTGAAATTGAAAGT
1 AAAATTGAAAGTGAAAGT
45531322 GATATGAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.22, T:0.25
Consensus pattern (18 bp):
AAAATTGAAAGTGAAAGT
Found at i:45541983 original size:44 final size:42
Alignment explanation
Indices: 45541912--45542009 Score: 135
Period size: 44 Copynumber: 2.3 Consensus size: 42
45541902 ATATGTGTTA
**
45541912 TCGTGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACGTCTGAAACGTTGGCATCGTA-TT-TGATT
*
45541955 TACGTGTAAGACCACGTCTGAAATGTTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACGTCTGAAACGTTGGCATCGTATTTGATT
45541998 TCGTGTAAGACC
1 TCGTGTAAGACC
45542010 CTGTTTGGGC
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
42 11 0.22
43 7 0.14
44 31 0.62
45 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGAAACGTTGGCATCGTATTTGATT
Found at i:45548858 original size:17 final size:18
Alignment explanation
Indices: 45548827--45548860 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
45548817 CGTGTGGTTT
45548827 ACCCGTATGGGCCCACAC
1 ACCCGTATGGGCCCACAC
45548845 ACCCGTAT-GGCCCACA
1 ACCCGTATGGGCCCACA
45548861 GGGCCCAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.24, C:0.44, G:0.21, T:0.12
Consensus pattern (18 bp):
ACCCGTATGGGCCCACAC
Found at i:45556980 original size:47 final size:47
Alignment explanation
Indices: 45556926--45557087 Score: 177
Period size: 47 Copynumber: 3.5 Consensus size: 47
45556916 CTAAGTTGCC
* * * *
45556926 TAAACTTAGGACACATTAAGTAGCT-ATATTGACTAAAACATATTAAA
1 TAAACTTAGGACACATTAAATAGCTGA-ACTAACTAAAACACATTAAA
* * *
45556973 TAAACTTAGGACATATTAAATAGCTGAACTAATTAGAACACATTAAA
1 TAAACTTAGGACACATTAAATAGCTGAACTAACTAAAACACATTAAA
* * * *
45557020 TAAACTTAAGACA-ATTTAAATTGCTGAACTAATTAGAACACATTAAA
1 TAAACTTAGGACACA-TTAAATAGCTGAACTAACTAAAACACATTAAA
*
45557067 TAAACTTAAGACA-ATTAAATA
1 TAAACTTAGGACACATTAAATA
45557088 CTTAAACTAA
Statistics
Matches: 103, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
46 7 0.07
47 95 0.92
48 1 0.01
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.29
Consensus pattern (47 bp):
TAAACTTAGGACACATTAAATAGCTGAACTAACTAAAACACATTAAA
Found at i:45557017 original size:27 final size:27
Alignment explanation
Indices: 45556978--45557068 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 27
45556968 TTAAATAAAC
* *
45556978 TTAGGACATATTAAATAGCTGAACTAA
1 TTAGAACACATTAAATAGCTGAACTAA
45557005 TTAGAACACATTAAATA----AACT--
1 TTAGAACACATTAAATAGCTGAACTAA
* *
45557026 TAAG-ACA-ATTTAAATTGCTGAACTAA
1 TTAGAACACA-TTAAATAGCTGAACTAA
45557052 TTAGAACACATTAAATA
1 TTAGAACACATTAAATA
45557069 AACTTAAGAC
Statistics
Matches: 49, Mismatches: 6, Indels: 18
0.67 0.08 0.25
Matches are distributed among these distances:
19 1 0.02
20 9 0.18
21 3 0.06
23 4 0.08
24 4 0.08
26 3 0.06
27 24 0.49
28 1 0.02
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.30
Consensus pattern (27 bp):
TTAGAACACATTAAATAGCTGAACTAA
Found at i:45558464 original size:15 final size:15
Alignment explanation
Indices: 45558423--45558469 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
45558413 TTAAAATTTG
*
45558423 AAAAATATAGAAACTA
1 AAAAAT-TATAAACTA
* *
45558439 AAAAAAT-TAAATTA
1 AAAAATTATAAACTA
45558453 AAAAATTATAAACTA
1 AAAAATTATAAACTA
45558468 AA
1 AA
45558470 TCCACATCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
14 11 0.44
15 9 0.36
16 5 0.20
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.23
Consensus pattern (15 bp):
AAAAATTATAAACTA
Found at i:45559349 original size:88 final size:88
Alignment explanation
Indices: 45559168--45559385 Score: 226
Period size: 88 Copynumber: 2.4 Consensus size: 88
45559158 GTAAAAATCT
* *
45559168 CTCAAACTTTTTAAAAAAAAGTAATTAAGCCTCTCT-CTTTTTTTTTGCACCCAATTGAGCACTT
1 CTCAAACTTTTT-CAAAAAAGCAATTAAGCC-C-CTGC-TTTTTTTTGCACCCAATTGAGCACTT
** * * *
45559232 GGACTTTCAAAATGCATCAAAAAGGCC
62 AAACTGTCAAAATGCATAAAAAAGACC
* * *
45559259 CTCAAACTTCTTCAATAAAAGCAATTAAGCCCCTGCTTTTTTTT-CACTCAATT-AGGTACTTAA
1 CTCAAACTTTTTCAA-AAAAGCAATTAAGCCCCTGCTTTTTTTTGCACCCAATTGA-GCACTTAA
*
45559322 ACTGTCAAATTGCATAAAAAAGACC
64 ACTGTCAAAATGCATAAAAAAGACC
* * * *
45559347 CTCAAAATTTTTCAAAAAAACAATTAAACCCTTGCTTTT
1 CTCAAACTTTTTCAAAAAAGCAATTAAGCCCCTGCTTTT
45559386 ATTAAAAATT
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
87 22 0.20
88 47 0.44
89 10 0.09
90 4 0.04
91 25 0.23
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.33
Consensus pattern (88 bp):
CTCAAACTTTTTCAAAAAAGCAATTAAGCCCCTGCTTTTTTTTGCACCCAATTGAGCACTTAAAC
TGTCAAAATGCATAAAAAAGACC
Found at i:45559429 original size:10 final size:9
Alignment explanation
Indices: 45559388--45559476 Score: 63
Period size: 10 Copynumber: 9.6 Consensus size: 9
45559378 TTGCTTTTAT
45559388 TAAAAATTA
1 TAAAAATTA
*
45559397 TAAAAAATAA
1 T-AAAAATTA
**
45559407 TAAATTTTA
1 TAAAAATTA
45559416 TAAAAATTA
1 TAAAAATTA
**
45559425 TTAAATTTTAA
1 -TAAAAATT-A
45559436 TAAAAATTA
1 TAAAAATTA
*
45559445 -AAAAATTG
1 TAAAAATTA
*
45559453 TAAAATTTTA
1 TAAAA-ATTA
*
45559463 TAAAAATCA
1 TAAAAATTA
45559472 TAAAA
1 TAAAA
45559477 GAAATAACAA
Statistics
Matches: 60, Mismatches: 15, Indels: 10
0.71 0.18 0.12
Matches are distributed among these distances:
8 7 0.12
9 25 0.42
10 27 0.45
11 1 0.02
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (9 bp):
TAAAAATTA
Found at i:45559438 original size:20 final size:19
Alignment explanation
Indices: 45559394--45559451 Score: 80
Period size: 19 Copynumber: 3.0 Consensus size: 19
45559384 TTATTAAAAA
*
45559394 TTATAAAAAATAATAAATT
1 TTATAAAAATTAATAAATT
*
45559413 TTATAAAAATTATTAAATT
1 TTATAAAAATTAATAAATT
*
45559432 TTAATAAAAATTAAAAAATT
1 TT-ATAAAAATTAATAAATT
45559452 GTAAAATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 19 0.56
20 15 0.44
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TTATAAAAATTAATAAATT
Found at i:45559448 original size:28 final size:27
Alignment explanation
Indices: 45559389--45559469 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 27
45559379 TGCTTTTATT
** * **
45559389 AAAAATTATAAAAAATAATAAATTTTA
1 AAAAATTATAAAATTTTATAAAAATTA
*
45559416 TAAAAATTATTAAATTTTAATAAAAATTA
1 -AAAAATTATAAAATTTT-ATAAAAATTA
*
45559445 AAAAATTGTAAAATTTTATAAAAAT
1 AAAAATTATAAAATTTTATAAAAAT
45559470 CATAAAAGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
27 8 0.18
28 28 0.64
29 8 0.18
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (27 bp):
AAAAATTATAAAATTTTATAAAAATTA
Found at i:45559476 original size:27 final size:28
Alignment explanation
Indices: 45559417--45559476 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
45559407 TAAATTTTAT
* *
45559417 AAAAATTATTAAATTTTAATAAAAATTA
1 AAAAATTATAAAATTTTAATAAAAATCA
*
45559445 AAAAATTGTAAAATTTT-ATAAAAATCA
1 AAAAATTATAAAATTTTAATAAAAATCA
*
45559472 TAAAA
1 AAAAA
45559477 GAAATAACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 13 0.46
28 15 0.54
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (28 bp):
AAAAATTATAAAATTTTAATAAAAATCA
Found at i:45559692 original size:29 final size:27
Alignment explanation
Indices: 45559659--45559764 Score: 86
Period size: 30 Copynumber: 3.7 Consensus size: 27
45559649 TTACATTTTG
*
45559659 TATAATTTTCTTAGGACTTTATAAAATTT
1 TATAATTTTTTTA-GA-TTTATAAAATTT
* * *
45559688 TATAAATTTTTTTATATTTCTATATATTT
1 TAT-AATTTTTTTAGATTTATA-AAATTT
* *
45559717 TTTAATTTTTTTACGATTTTTGTAAAATTT
1 TATAATTTTTTTA-GA--TTTATAAAATTT
*
45559747 TATAATTTTTTTATATTT
1 TATAATTTTTTTAGATTT
45559765 TTTTACGATT
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
27 3 0.05
28 15 0.24
29 13 0.21
30 26 0.42
31 5 0.08
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (27 bp):
TATAATTTTTTTAGATTTATAAAATTT
Found at i:45559698 original size:10 final size:10
Alignment explanation
Indices: 45559676--45559780 Score: 54
Period size: 10 Copynumber: 10.6 Consensus size: 10
45559666 TTCTTAGGAC
*
45559676 TTTATAAAAT
1 TTTATAAATT
45559686 TTTATAAATT
1 TTTATAAATT
* *
45559696 TTTTTATATT
1 TTTATAAATT
* *
45559706 TCTATATATT
1 TTTATAAATT
45559716 TTT-T-AATT
1 TTTATAAATT
* *
45559724 TTTTTACGATT
1 TTTATA-AATT
* *
45559735 TTTGTAAAAT
1 TTTATAAATT
45559745 TTTAT-AATT
1 TTTATAAATT
* *
45559754 TTTTTATATT
1 TTTATAAATT
* *
45559764 TTTTTACGATT
1 TTTATA-AATT
45559775 TTTATA
1 TTTATA
45559781 TTTTTTTCTA
Statistics
Matches: 73, Mismatches: 17, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
8 6 0.08
9 9 0.12
10 42 0.58
11 16 0.22
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (10 bp):
TTTATAAATT
Found at i:45559725 original size:58 final size:60
Alignment explanation
Indices: 45559638--45559764 Score: 170
Period size: 58 Copynumber: 2.1 Consensus size: 60
45559628 AATTACAAAA
* *
45559638 TTTATATTTCTTTACATTTTGTATAATTTTCTTAGGA-CTTTATAAAATTTTATAAATTTT
1 TTTATATTTCTATACATTTTGTATAATTTTCTTACGATCTTTATAAAATTTTAT-AATTTT
* * * *
45559698 TTTATATTTCTATATATTTT-T-TAATTTTTTTACGATTTTTGTAAAATTTTATAATTTT
1 TTTATATTTCTATACATTTTGTATAATTTTCTTACGATCTTTATAAAATTTTATAATTTT
45559756 TTTATATTT
1 TTTATATTT
45559765 TTTTACGATT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
58 27 0.45
59 15 0.25
60 18 0.30
ACGTcount: A:0.28, C:0.05, G:0.04, T:0.63
Consensus pattern (60 bp):
TTTATATTTCTATACATTTTGTATAATTTTCTTACGATCTTTATAAAATTTTATAATTTT
Found at i:45559735 original size:19 final size:20
Alignment explanation
Indices: 45559695--45559787 Score: 79
Period size: 19 Copynumber: 4.8 Consensus size: 20
45559685 TTTTATAAAT
* * *
45559695 TTTTTTATATTTCTATA-TA
1 TTTTTTATATTTTTTTACGA
45559714 TTTTTTA-ATTTTTTTACGA
1 TTTTTTATATTTTTTTACGA
* * *
45559733 TTTTTGTAAAATTTTATA--A
1 TTTTT-TATATTTTTTTACGA
45559752 TTTTTTTATATTTTTTTACGA
1 -TTTTTTATATTTTTTTACGA
45559773 -TTTTTATATTTTTTT
1 TTTTTTATATTTTTTT
45559788 CTAATTTTTA
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
18 7 0.12
19 38 0.63
20 7 0.12
21 8 0.13
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (20 bp):
TTTTTTATATTTTTTTACGA
Found at i:45559786 original size:10 final size:10
Alignment explanation
Indices: 45559693--45559804 Score: 72
Period size: 10 Copynumber: 11.5 Consensus size: 10
45559683 AATTTTATAA
45559693 ATTTTTTTAT
1 ATTTTTTTAT
* *
45559703 ATTTCTATAT
1 ATTTTTTTAT
45559713 A-TTTTTTA-
1 ATTTTTTTAT
*
45559721 ATTTTTTTACG
1 ATTTTTTTA-T
* *
45559732 ATTTTTGTAA
1 ATTTTTTTAT
* *
45559742 AATTTTATA-
1 ATTTTTTTAT
45559751 ATTTTTTTAT
1 ATTTTTTTAT
*
45559761 ATTTTTTTACG
1 ATTTTTTTA-T
45559772 A--TTTTTAT
1 ATTTTTTTAT
*
45559780 ATTTTTTTCT
1 ATTTTTTTAT
* *
45559790 AATTTTTAAT
1 ATTTTTTTAT
45559800 ATTTT
1 ATTTT
45559805 AATATTTTAT
Statistics
Matches: 78, Mismatches: 17, Indels: 14
0.72 0.16 0.13
Matches are distributed among these distances:
8 2 0.03
9 25 0.32
10 42 0.54
11 9 0.12
ACGTcount: A:0.25, C:0.04, G:0.03, T:0.69
Consensus pattern (10 bp):
ATTTTTTTAT
Found at i:45559793 original size:40 final size:40
Alignment explanation
Indices: 45559704--45559804 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 40
45559694 TTTTTTTATA
*
45559704 TTTCTATATATTTTTTA-ATTTTTTTACGATTTTTGTAAAAT
1 TTTCTA-AT-TTTTTTATATTTTTTTACGATTTTTATAAAAT
* ***
45559745 TTTATAATTTTTTTATATTTTTTTACGATTTTTATATTTT
1 TTTCTAATTTTTTTATATTTTTTTACGATTTTTATAAAAT
*
45559785 TTTCTAA-TTTTTAATATTTT
1 TTTCTAATTTTTTTATATTTT
45559805 AATATTTTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 19 0.37
40 28 0.54
41 5 0.10
ACGTcount: A:0.25, C:0.04, G:0.03, T:0.68
Consensus pattern (40 bp):
TTTCTAATTTTTTTATATTTTTTTACGATTTTTATAAAAT
Found at i:45559794 original size:19 final size:19
Alignment explanation
Indices: 45559696--45559804 Score: 69
Period size: 19 Copynumber: 5.6 Consensus size: 19
45559686 TTTATAAATT
* * * *
45559696 TTTTTATATTTCTATATAT
1 TTTTTATATTTTTTTACAA
*
45559715 TTTTTA-ATTTTTTTACGA
1 TTTTTATATTTTTTTACAA
* *** *
45559733 TTTTTGTAAAATTTTATAA
1 TTTTTATATTTTTTTACAA
*
45559752 TTTTTTTATATTTTTTTACGA
1 --TTTTTATATTTTTTTACAA
45559773 TTTTTATATTTTTTT-CTAA
1 TTTTTATATTTTTTTAC-AA
45559792 TTTTTAATATTTT
1 TTTTT-ATATTTT
45559805 AATATTTTAT
Statistics
Matches: 67, Mismatches: 18, Indels: 9
0.71 0.19 0.10
Matches are distributed among these distances:
18 13 0.19
19 34 0.51
20 7 0.10
21 13 0.19
ACGTcount: A:0.25, C:0.04, G:0.03, T:0.69
Consensus pattern (19 bp):
TTTTTATATTTTTTTACAA
Found at i:45563727 original size:22 final size:23
Alignment explanation
Indices: 45563683--45563727 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
45563673 ATTTCGAGTT
* *
45563683 TTTTTACCCGTATTTTAACTATA
1 TTTTTACCCGTATTATAAATATA
45563706 TTTTTACCCGTA-TATAAATATA
1 TTTTTACCCGTATTATAAATATA
45563728 AATATTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.31, C:0.16, G:0.04, T:0.49
Consensus pattern (23 bp):
TTTTTACCCGTATTATAAATATA
Found at i:45564107 original size:15 final size:15
Alignment explanation
Indices: 45564087--45564134 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
45564077 TGATAAACTA
*
45564087 AAAAAATTAAGTGTT
1 AAAAAATTAAGTATT
*
45564102 AAAAAATTAAATATT
1 AAAAAATTAAGTATT
*
45564117 AAAAAATTAAGTACT
1 AAAAAATTAAGTATT
45564132 AAA
1 AAA
45564135 TTAAAGTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.29
Consensus pattern (15 bp):
AAAAAATTAAGTATT
Found at i:45565460 original size:34 final size:34
Alignment explanation
Indices: 45565417--45565488 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
45565407 ATGTCCCAGA
45565417 CATGGTCTTACACTGACACATCTCGTAGCCGATG
1 CATGGTCTTACACTGACACATCTCGTAGCCGATG
*
45565451 CATGGTCTTACACTGACACATCTCGTAGCTGATG
1 CATGGTCTTACACTGACACATCTCGTAGCCGATG
45565485 CATG
1 CATG
45565489 TCCCAGACAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (34 bp):
CATGGTCTTACACTGACACATCTCGTAGCCGATG
Found at i:45572653 original size:35 final size:34
Alignment explanation
Indices: 45572607--45572706 Score: 137
Period size: 35 Copynumber: 2.9 Consensus size: 34
45572597 TACTCTCTCT
*
45572607 TTGGTATGTTTCGATTGGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTCG-TTGGACTAGCTCTTATGAGCA
*
45572642 TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGTA
1 TTGGTGTGTTTC-GTTGGACTAGCTCTTATGAGCA
* *
45572677 TTGGCGTGTTACTGTTGGACTAGCTCTTAT
1 TTGGTGTGTTTC-GTTGGACTAGCTCTTAT
45572707 AAGTATTTGA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
35 58 0.98
36 1 0.02
ACGTcount: A:0.16, C:0.14, G:0.28, T:0.42
Consensus pattern (34 bp):
TTGGTGTGTTTCGTTGGACTAGCTCTTATGAGCA
Found at i:45572712 original size:35 final size:35
Alignment explanation
Indices: 45572621--45572713 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 35
45572611 TATGTTTCGA
* * *
45572621 TTGGACTAGCTCTTATGAGCATTGGTGTGTTTCGG
1 TTGGACTAGCTCTTATGAGTATTGGCGTGTTACGG
*
45572656 TTGGACTAGCTCTTATGAGTATTGGCGTGTTACTG
1 TTGGACTAGCTCTTATGAGTATTGGCGTGTTACGG
*
45572691 TTGGACTAGCTCTTATAAGTATT
1 TTGGACTAGCTCTTATGAGTATT
45572714 TGATGTGTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 53 1.00
ACGTcount: A:0.18, C:0.14, G:0.27, T:0.41
Consensus pattern (35 bp):
TTGGACTAGCTCTTATGAGTATTGGCGTGTTACGG
Found at i:45572859 original size:36 final size:36
Alignment explanation
Indices: 45572818--45572892 Score: 123
Period size: 36 Copynumber: 2.1 Consensus size: 36
45572808 GAAAGAATAT
* * *
45572818 TTGTGAAATGTTATTGAATTTGATGTTCAGTTTAGA
1 TTGTGAAATGTTATTGAATGTAATGTTCAGATTAGA
45572854 TTGTGAAATGTTATTGAATGTAATGTTCAGATTAGA
1 TTGTGAAATGTTATTGAATGTAATGTTCAGATTAGA
45572890 TTG
1 TTG
45572893 AACGAGGGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.29, C:0.03, G:0.23, T:0.45
Consensus pattern (36 bp):
TTGTGAAATGTTATTGAATGTAATGTTCAGATTAGA
Found at i:45573078 original size:35 final size:35
Alignment explanation
Indices: 45573032--45573148 Score: 155
Period size: 35 Copynumber: 3.3 Consensus size: 35
45573022 TACTCTCTCT
*
45573032 TTGGTGTGTTTCGATTGGACTAGCTCTTATGAGTA
1 TTGGTGTGTTTCGATTGGACTAGCTCTTATAAGTA
*
45573067 TTGGTGTGTTTCGGTTGGACTAGCTCTTATAAGTA
1 TTGGTGTGTTTCGATTGGACTAGCTCTTATAAGTA
* * *
45573102 TTGGTGTGTTAC-AGTTGGACTAGCTCTTGTAAGCA
1 TTGGTGTGTTTCGA-TTGGACTAGCTCTTATAAGTA
*
45573137 TTTGATGTGTTT
1 -TTGGTGTGTTT
45573149 TAGAGGGATT
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
35 63 0.88
36 9 0.12
ACGTcount: A:0.17, C:0.11, G:0.28, T:0.44
Consensus pattern (35 bp):
TTGGTGTGTTTCGATTGGACTAGCTCTTATAAGTA
Found at i:45575792 original size:17 final size:18
Alignment explanation
Indices: 45575770--45575803 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
45575760 TATGCTTCAA
45575770 TTGTTTGTG-AATTGTGT
1 TTGTTTGTGAAATTGTGT
45575787 TTGTTTGTGAAATTGTG
1 TTGTTTGTGAAATTGTG
45575804 AACCTAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (18 bp):
TTGTTTGTGAAATTGTGT
Found at i:45579343 original size:35 final size:36
Alignment explanation
Indices: 45579265--45579358 Score: 129
Period size: 36 Copynumber: 2.6 Consensus size: 36
45579255 TATGTTTCGA
* * *
45579265 TTGGACTAGCTCTTATGAGCATTGGTGGTGTTTCGG
1 TTGGACTAGCTCTTATGAGTATTGGTCGTGTTACGG
45579301 TTGGACTAGCTCTTATGAGTATTGG-CGTGTTACTGG
1 TTGGACTAGCTCTTATGAGTATTGGTCGTGTTAC-GG
*
45579337 TT-GACTAGCTCTTATAAGTATT
1 TTGGACTAGCTCTTATGAGTATT
45579359 TGATGTGTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
35 25 0.47
36 28 0.53
ACGTcount: A:0.18, C:0.14, G:0.28, T:0.40
Consensus pattern (36 bp):
TTGGACTAGCTCTTATGAGTATTGGTCGTGTTACGG
Found at i:45579367 original size:36 final size:35
Alignment explanation
Indices: 45579251--45579367 Score: 128
Period size: 36 Copynumber: 3.3 Consensus size: 35
45579241 TACTCTCTCT
* * * *
45579251 TTGGTATGTTTCGATTGGACTAGCTCTTATGAGCA
1 TTGGTGTGTTACGGTTGGACTAGCTCTTATGAGTA
*
45579286 TTGGTGGTGTTTCGGTTGGACTAGCTCTTATGAGTA
1 TTGGT-GTGTTACGGTTGGACTAGCTCTTATGAGTA
* *
45579322 TTGGCGTGTTACTGGTT-GACTAGCTCTTATAAGTA
1 TTGGTGTGTTAC-GGTTGGACTAGCTCTTATGAGTA
*
45579357 TTTGATGTGTT
1 -TTGGTGTGTT
45579368 TTAGAAGGAT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
35 28 0.39
36 43 0.61
ACGTcount: A:0.17, C:0.12, G:0.28, T:0.43
Consensus pattern (35 bp):
TTGGTGTGTTACGGTTGGACTAGCTCTTATGAGTA
Found at i:45579505 original size:36 final size:36
Alignment explanation
Indices: 45579464--45579538 Score: 123
Period size: 36 Copynumber: 2.1 Consensus size: 36
45579454 AAAGAATTAT
* * *
45579464 TTGTGAAATGTTATTGAATTTGATGTTCAGTTTAGA
1 TTGTGAAATGTTATTGAATGTAATGTTCAGATTAGA
45579500 TTGTGAAATGTTATTGAATGTAATGTTCAGATTAGA
1 TTGTGAAATGTTATTGAATGTAATGTTCAGATTAGA
45579536 TTG
1 TTG
45579539 AACGAGGGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.29, C:0.03, G:0.23, T:0.45
Consensus pattern (36 bp):
TTGTGAAATGTTATTGAATGTAATGTTCAGATTAGA
Found at i:45579735 original size:34 final size:34
Alignment explanation
Indices: 45579677--45579792 Score: 151
Period size: 35 Copynumber: 3.3 Consensus size: 34
45579667 TACTCTCTCT
*
45579677 TTGGTGTGTTTCGATTGGACTAGCTCTTATGAGTA
1 TTGGTGTGTTTCG-TTGGACTAGCTCTTATAAGTA
*
45579712 TTGGTGTGTTTCGGTGGACTAGCTCTTATAAGTA
1 TTGGTGTGTTTCGTTGGACTAGCTCTTATAAGTA
* * *
45579746 TTGGTGTGTTACAGTTGGACTAGCTCTTGTAAGCA
1 TTGGTGTGTTTC-GTTGGACTAGCTCTTATAAGTA
*
45579781 TTTGATGTGTTT
1 -TTGGTGTGTTT
45579793 AGGGGATTGG
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
34 30 0.42
35 32 0.45
36 9 0.13
ACGTcount: A:0.17, C:0.11, G:0.28, T:0.43
Consensus pattern (34 bp):
TTGGTGTGTTTCGTTGGACTAGCTCTTATAAGTA
Found at i:45585975 original size:35 final size:34
Alignment explanation
Indices: 45585929--45586028 Score: 137
Period size: 35 Copynumber: 2.9 Consensus size: 34
45585919 TACTCTCTCT
*
45585929 TTGGTATGTTTCGATTGGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTCG-TTGGACTAGCTCTTATGAGCA
*
45585964 TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGTA
1 TTGGTGTGTTTC-GTTGGACTAGCTCTTATGAGCA
* *
45585999 TTGGCGTGTTACTGTTGGACTAGCTCTTAT
1 TTGGTGTGTTTC-GTTGGACTAGCTCTTAT
45586029 AAGTATTTGA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
35 58 0.98
36 1 0.02
ACGTcount: A:0.16, C:0.14, G:0.28, T:0.42
Consensus pattern (34 bp):
TTGGTGTGTTTCGTTGGACTAGCTCTTATGAGCA
Found at i:45586034 original size:35 final size:35
Alignment explanation
Indices: 45585943--45586035 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 35
45585933 TATGTTTCGA
* * *
45585943 TTGGACTAGCTCTTATGAGCATTGGTGTGTTTCGG
1 TTGGACTAGCTCTTATGAGTATTGGCGTGTTACGG
*
45585978 TTGGACTAGCTCTTATGAGTATTGGCGTGTTACTG
1 TTGGACTAGCTCTTATGAGTATTGGCGTGTTACGG
*
45586013 TTGGACTAGCTCTTATAAGTATT
1 TTGGACTAGCTCTTATGAGTATT
45586036 TGATGTGTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 53 1.00
ACGTcount: A:0.18, C:0.14, G:0.27, T:0.41
Consensus pattern (35 bp):
TTGGACTAGCTCTTATGAGTATTGGCGTGTTACGG
Found at i:45586181 original size:36 final size:36
Alignment explanation
Indices: 45586140--45586214 Score: 123
Period size: 36 Copynumber: 2.1 Consensus size: 36
45586130 GAAAGAATAT
* * *
45586140 TTGTGAAATGTTATTGAATTTGATGTTCAGTTTAGA
1 TTGTGAAATGTTATTGAATGTAATGTTCAGATTAGA
45586176 TTGTGAAATGTTATTGAATGTAATGTTCAGATTAGA
1 TTGTGAAATGTTATTGAATGTAATGTTCAGATTAGA
45586212 TTG
1 TTG
45586215 AACGAGGGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.29, C:0.03, G:0.23, T:0.45
Consensus pattern (36 bp):
TTGTGAAATGTTATTGAATGTAATGTTCAGATTAGA
Found at i:45586400 original size:35 final size:35
Alignment explanation
Indices: 45586354--45586470 Score: 155
Period size: 35 Copynumber: 3.3 Consensus size: 35
45586344 TACTCTCTCT
*
45586354 TTGGTGTGTTTCGATTGGACTAGCTCTTATGAGTA
1 TTGGTGTGTTTCGATTGGACTAGCTCTTATAAGTA
*
45586389 TTGGTGTGTTTCGGTTGGACTAGCTCTTATAAGTA
1 TTGGTGTGTTTCGATTGGACTAGCTCTTATAAGTA
* * *
45586424 TTGGTGTGTTAC-AGTTGGACTAGCTCTTGTAAGCA
1 TTGGTGTGTTTCGA-TTGGACTAGCTCTTATAAGTA
*
45586459 TTTGATGTGTTT
1 -TTGGTGTGTTT
45586471 TAGAGGGATT
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
35 63 0.88
36 9 0.12
ACGTcount: A:0.17, C:0.11, G:0.28, T:0.44
Consensus pattern (35 bp):
TTGGTGTGTTTCGATTGGACTAGCTCTTATAAGTA
Found at i:45589112 original size:17 final size:18
Alignment explanation
Indices: 45589090--45589123 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
45589080 TATGCTTCAA
45589090 TTGTTTGTG-AATTGTGT
1 TTGTTTGTGAAATTGTGT
45589107 TTGTTTGTGAAATTGTG
1 TTGTTTGTGAAATTGTG
45589124 AACCTAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (18 bp):
TTGTTTGTGAAATTGTGT
Found at i:45594041 original size:23 final size:23
Alignment explanation
Indices: 45594015--45594113 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
45594005 ATAAGTGCAA
45594015 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
45594038 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
45594061 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
45594084 CACTGAAACGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
45594107 CACTGAT
1 CACTGAT
45594114 CAATAACACT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 71 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:45600399 original size:23 final size:23
Alignment explanation
Indices: 45600373--45600471 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
45600363 CATAAGTGCA
45600373 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
45600396 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
45600419 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
45600442 CACTGAAACGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
45600465 CACTGAT
1 CACTGAT
45600472 CAATAACACT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 71 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:45603327 original size:19 final size:21
Alignment explanation
Indices: 45603303--45603342 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
45603293 AAGAAACGGC
45603303 TCTCATGCT-AA-TCTCTCAA
1 TCTCATGCTCAATTCTCTCAA
*
45603322 TCTCATGTTCAATTCTCTCAA
1 TCTCATGCTCAATTCTCTCAA
45603343 ACCAAAACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 2 0.11
21 8 0.44
ACGTcount: A:0.25, C:0.30, G:0.05, T:0.40
Consensus pattern (21 bp):
TCTCATGCTCAATTCTCTCAA
Found at i:45620033 original size:43 final size:43
Alignment explanation
Indices: 45619972--45620137 Score: 167
Period size: 43 Copynumber: 3.9 Consensus size: 43
45619962 ATTACCGAGA
* * *
45619972 TGTGATTACATGTAAGACCGTGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* * *
45620015 TGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCG-TAT
* * * * *
45620059 T-CGATTTCGTGTAAGACCCTATCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* * *
45620100 AAGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 -TGTGATTACATGTAAGACCATATCTGGGACATTGGCAT
45620138 TGTACGAGCT
Statistics
Matches: 103, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.02
42 6 0.06
43 91 0.88
44 4 0.04
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
Found at i:45622505 original size:17 final size:19
Alignment explanation
Indices: 45622476--45622510 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
45622466 ATTCTTACAT
45622476 TTATTTGAAACCT-TCCAC
1 TTATTTGAAACCTATCCAC
45622494 TTATTT-AAACCTATCCA
1 TTATTTGAAACCTATCCA
45622511 TTCACTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.26, G:0.03, T:0.40
Consensus pattern (19 bp):
TTATTTGAAACCTATCCAC
Found at i:45629328 original size:49 final size:50
Alignment explanation
Indices: 45629269--45629401 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 50
45629259 TATTGTGTGT
* *
45629269 CAGTGTAAGACCTGTTTGGGACATGGCATCGACACT-GATAGATGAGAGC
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGACACTCGATAGAAGAAAGC
* * * *
45629318 CAGTGTAAGACCTGTTTGGGACACGACATCGAC-CTCGATATAAGAAATC
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGACACTCGATAGAAGAAAGC
* * *
45629367 CAGTGTAAGACCATGTCTGGGATATGGCGTCGACA
1 CAGTGTAAGACC-TGTTTGGGACATGGCATCGACA
45629402 TCTTATCCCA
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
48 2 0.03
49 52 0.74
50 16 0.23
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (50 bp):
CAGTGTAAGACCTGTTTGGGACATGGCATCGACACTCGATAGAAGAAAGC
Found at i:45636931 original size:48 final size:48
Alignment explanation
Indices: 45636860--45637028 Score: 173
Period size: 48 Copynumber: 3.6 Consensus size: 48
45636850 TGATACGTGT
*
45636860 GCCAGTGTAAGACATGTCTGGGACATGTATCGGCCTTGAGATATACTA
1 GCCAGTGTAAGACATGTCTGGGACATGTATCGGCCTTGAGATATACAA
* * * ** *
45636908 GCCAGTGTAAGACATGCCTGGGACATGCATCGGCTTTGAGA-CGA-GA
1 GCCAGTGTAAGACATGTCTGGGACATGTATCGGCCTTGAGATATACAA
* * * **
45636954 GCTAGTGTAAGACATGTCTAGGACATGCT-TCAGCCTCAAGATATACAA
1 GCCAGTGTAAGACATGTCTGGGACATG-TATCGGCCTTGAGATATACAA
* * *
45637002 GCTAGTGTAAAACTTGTCTGGGACATG
1 GCCAGTGTAAGACATGTCTGGGACATG
45637029 GCGTCAGCTT
Statistics
Matches: 98, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 33 0.34
47 2 0.02
48 63 0.64
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (48 bp):
GCCAGTGTAAGACATGTCTGGGACATGTATCGGCCTTGAGATATACAA
Found at i:45637113 original size:49 final size:49
Alignment explanation
Indices: 45637049--45637167 Score: 141
Period size: 49 Copynumber: 2.4 Consensus size: 49
45637039 ATTGTGTGTT
* * *
45637049 AGTGTAAGACCTGTTTGGGACATGGCATCAACAC-CGATAGATGAAAGCC
1 AGTGTAAGACCTGTTTGGGACACGACATCAAC-CTCGATAGAAGAAAGCC
* * * *
45637098 AGTGTAAGACTTGTTTGGGACACGACATCGACCTCGATATAAGAAATCC
1 AGTGTAAGACCTGTTTGGGACACGACATCAACCTCGATAGAAGAAAGCC
*
45637147 AGTGTAAGACCATGTCTGGGA
1 AGTGTAAGACC-TGTTTGGGA
45637168 TATGGCGTCG
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
48 1 0.02
49 50 0.85
50 8 0.14
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTGTTTGGGACACGACATCAACCTCGATAGAAGAAAGCC
Found at i:45640352 original size:43 final size:43
Alignment explanation
Indices: 45640296--45640419 Score: 144
Period size: 43 Copynumber: 2.9 Consensus size: 43
45640286 TACCGAGATA
*
45640296 TGATTACGAGTAAGACCATGTCTGGGACATTGGCATTG-TATT
1 TGATTACGAGTAAGACCATGTCTGGGACATTGGCATCGTTATT
* * * *
45640338 GTGGTTACGCGTAAGACTATGTTTGGGACATTGGCATCGTTATT
1 -TGATTACGAGTAAGACCATGTCTGGGACATTGGCATCGTTATT
* * *
45640382 TGATTTC-ATGTAAGACCCTGTCTGGGACAGTGGCATCG
1 TGATTACGA-GTAAGACCATGTCTGGGACATTGGCATCG
45640420 ATAAGTGATA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
43 63 0.94
44 4 0.06
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (43 bp):
TGATTACGAGTAAGACCATGTCTGGGACATTGGCATCGTTATT
Found at i:45647680 original size:42 final size:42
Alignment explanation
Indices: 45647621--45647742 Score: 154
Period size: 43 Copynumber: 2.9 Consensus size: 42
45647611 TAGGGTTAGT
* *
45647621 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCAATA
* * * * *
45647663 TGAGATTTCATGTAAGACCATAGCTGGGCTCTTGGAATCAATA
1 TGAGATTACATGTAAGACCATATCTGGGAT-ATGGCATCAATA
* *
45647706 TGAGATCACATGTAAGATCATATCTGGGATATGGCAT
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCAT
45647743 TGGTATGGTA
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACATGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:45647856 original size:20 final size:20
Alignment explanation
Indices: 45647828--45647865 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45647818 CAATGTTATA
45647828 GTTGGGAAAGACTATGGTAT
1 GTTGGGAAAGACTATGGTAT
* *
45647848 GTTGTGAAAGATTATGGT
1 GTTGGGAAAGACTATGGT
45647866 GATTTGCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.03, G:0.34, T:0.34
Consensus pattern (20 bp):
GTTGGGAAAGACTATGGTAT
Found at i:45651873 original size:19 final size:19
Alignment explanation
Indices: 45651851--45651912 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 19
45651841 ATTTTTTAAT
45651851 TATTGAATGATTTTAGCTC
1 TATTGAATGATTTTAGCTC
* *
45651870 TATTTGCATCTG-TTTCA-CTC
1 TA-TTG-A-ATGATTTTAGCTC
*
45651890 TATTGAATGATTTTCGCTC
1 TATTGAATGATTTTAGCTC
45651909 TATT
1 TATT
45651913 TTCCTTCTCC
Statistics
Matches: 33, Mismatches: 5, Indels: 10
0.69 0.10 0.21
Matches are distributed among these distances:
17 2 0.06
18 4 0.12
19 12 0.36
20 8 0.24
21 5 0.15
22 2 0.06
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (19 bp):
TATTGAATGATTTTAGCTC
Found at i:45652305 original size:17 final size:17
Alignment explanation
Indices: 45652283--45652323 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
45652273 AATTTCCCAA
*
45652283 AGTAATAATGTAATATT
1 AGTAATAATATAATATT
45652300 AGTAATAATATAATATT
1 AGTAATAATATAATATT
45652317 AGTAATA
1 AGTAATA
45652324 GAGAAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (17 bp):
AGTAATAATATAATATT
Found at i:45652946 original size:91 final size:91
Alignment explanation
Indices: 45652624--45653025 Score: 583
Period size: 91 Copynumber: 4.4 Consensus size: 91
45652614 CTTCAATTAA
* * *
45652624 TTAATTTATGTTGTTGTACTATTATATTAATTTAGGCTTCAATTAATTAACTTTAAAGTTTAAAC
1 TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAC
* *
45652689 TGTGGTTTAACAGAC-ATTTTTTTGT
66 TGTAGTTTAACAGACTTTTTTTTTGT
45652714 TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAC
1 TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAC
* *
45652779 TGTAGTCTAA-GGTAACTTTTTTTTTGT
66 TGTAGTTTAACAG--ACTTTTTTTTTGT
*
45652806 TTAATTTATGCTGTTGTACTTGTACTATTATATTAATTTAGGCTCCAATTAACTAACTTTAAAGT
1 TTAATTTATGC-----TA-TTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGT
* *
45652871 TTAAACGGTAGCTTAACAGACTTTTTTTTTGT
60 TTAAACTGTAGTTTAACAGACTTTTTTTTTGT
* *
45652903 TTAATTTATGCTATTGTACTATTATATTAATTTAGACTTCAATTAACTAACTTTAAAGTTTAAAA
1 TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAC
*
45652968 TGTAGTTTAACATACTTTTTTTTTGT
66 TGTAGTTTAACAGACTTTTTTTTTGT
**
45652994 TTAATTTATGCTGCTGTACTATTATATTAATT
1 TTAATTTATGCTATTGTACTATTATATTAATT
45653026 AATTTTTAAT
Statistics
Matches: 282, Mismatches: 20, Indels: 19
0.88 0.06 0.06
Matches are distributed among these distances:
89 1 0.00
90 70 0.25
91 104 0.37
92 22 0.08
97 26 0.09
98 58 0.21
99 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.11, T:0.49
Consensus pattern (91 bp):
TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAC
TGTAGTTTAACAGACTTTTTTTTTGT
Found at i:45652987 original size:188 final size:188
Alignment explanation
Indices: 45652637--45653030 Score: 634
Period size: 188 Copynumber: 2.1 Consensus size: 188
45652627 ATTTATGTTG
* * * * *
45652637 TTGTACTATTATATTAATTTAGGCTTCAATTAATTAACTTTAAAGTTTAAACTGTGGTTTAACAG
1 TTGTACTATTATATTAATTTAGGCTCCAATTAACTAACTTTAAAGTTTAAACGGTAGCTTAACAG
*
45652702 ACATTTTTTTGTTTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTT
66 ACATTTTTTTGTTTAATTTATGCTATTGTACTATTATATTAATTTAGACTTCAATTAACTAACTT
* ** *
45652767 TAAAGTTTAAACTGTAGTCTAAGGTAACTTTTTTTTTGTTTAATTTATGCTGTTGTAC
131 TAAAGTTTAAAATGTAGTCTAACATAACTTTTTTTTTGTTTAATTTATGCTGCTGTAC
45652825 TTGTACTATTATATTAATTTAGGCTCCAATTAACTAACTTTAAAGTTTAAACGGTAGCTTAACAG
1 TTGTACTATTATATTAATTTAGGCTCCAATTAACTAACTTTAAAGTTTAAACGGTAGCTTAACAG
*
45652890 ACTTTTTTTTTGTTTAATTTATGCTATTGTACTATTATATTAATTTAGACTTCAATTAACTAACT
66 AC-ATTTTTTTGTTTAATTTATGCTATTGTACTATTATATTAATTTAGACTTCAATTAACTAACT
*
45652955 TTAAAGTTTAAAATGTAGTTTAACAT-ACTTTTTTTTTGTTTAATTTATGCTGCTGTAC
130 TTAAAGTTTAAAATGTAGTCTAACATAACTTTTTTTTTGTTTAATTTATGCTGCTGTAC
45653013 TAT-TA-TATTA-ATTAATTT
1 T-TGTACTATTATATTAATTT
45653031 TTAATTTAAT
Statistics
Matches: 192, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
186 8 0.04
187 5 0.03
188 96 0.50
189 83 0.43
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.49
Consensus pattern (188 bp):
TTGTACTATTATATTAATTTAGGCTCCAATTAACTAACTTTAAAGTTTAAACGGTAGCTTAACAG
ACATTTTTTTGTTTAATTTATGCTATTGTACTATTATATTAATTTAGACTTCAATTAACTAACTT
TAAAGTTTAAAATGTAGTCTAACATAACTTTTTTTTTGTTTAATTTATGCTGCTGTAC
Found at i:45655677 original size:32 final size:31
Alignment explanation
Indices: 45655641--45655704 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 31
45655631 ACTTATGTTT
* *
45655641 TTTATTAT-AATCTTGTTGTATTATTTTAGTTG
1 TTTATT-TGAATCATGTTGT-TTATTTGAGTTG
45655673 TTTATTTGGAATCATGTTGTTTATTTGAGTTG
1 TTTATTT-GAATCATGTTGTTTATTTGAGTTG
45655705 ATGTTGTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 1 0.04
32 17 0.61
33 10 0.36
ACGTcount: A:0.20, C:0.03, G:0.17, T:0.59
Consensus pattern (31 bp):
TTTATTTGAATCATGTTGTTTATTTGAGTTG
Found at i:45659023 original size:40 final size:39
Alignment explanation
Indices: 45658834--45659016 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
45658824 CGAATGATGT
* * * *
45658834 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
45658874 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
45658914 CCGGGCTAAG-CCCGAAGGCATTGGTGCG-GTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45658951 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
45658992 CTGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
45659017 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
38 17 0.14
39 34 0.28
40 62 0.50
41 10 0.08
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45668501 original size:25 final size:25
Alignment explanation
Indices: 45668473--45668551 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
45668463 CCTAATGCCG
45668473 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
45668498 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
45668520 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
45668545 ATGTGAT
1 ATGTGAT
45668552 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:45668527 original size:47 final size:47
Alignment explanation
Indices: 45668458--45668882 Score: 737
Period size: 47 Copynumber: 9.1 Consensus size: 47
45668448 GAAATGATAG
45668458 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45668504 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
45668551 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
45668598 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45668645 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45668692 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45668739 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45668786 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * * *
45668833 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45668879 TAAG
1 TAAG
45668883 TCCCGAAGGG
Statistics
Matches: 362, Mismatches: 15, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
46 48 0.13
47 314 0.87
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:45669057 original size:37 final size:37
Alignment explanation
Indices: 45669001--45669079 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
45668991 CCGAGCTCTA
* *
45669001 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
45669038 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45669075 AAGAC
1 AAGAC
45669080 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45671221 original size:40 final size:39
Alignment explanation
Indices: 45671137--45671321 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
45671127 TCGAATGATG
* * * *
45671137 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
45671177 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
45671217 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
45671256 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
45671297 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
45671322 AACAAGTAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45671273 original size:79 final size:81
Alignment explanation
Indices: 45671137--45671319 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
45671127 TCGAATGATG
* *
45671137 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
45671201 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
45671216 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
45671278 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
45671296 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
45671320 TGAACAAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:45671343 original size:79 final size:79
Alignment explanation
Indices: 45671138--45671344 Score: 228
Period size: 79 Copynumber: 2.6 Consensus size: 79
45671128 CGAATGATGT
* *
45671138 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACCATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
*
45671201 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* * *
45671218 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCATT
45671280 TGTGCGAGTTACT-ATAA
63 TGTGCGAGTTACTAAT-A
* **
45671297 CCGGGCTATGTCCCGAAGGCATTTGAACAAGTAGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGTTAA
45671345 ATTCCAAAGG
Statistics
Matches: 107, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
78 3 0.03
79 62 0.58
80 42 0.39
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATA
Done.