Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 144 of 250
Found at i:46648783 original size:27 final size:27
Alignment explanation
Indices: 46648730--46648985 Score: 144
Period size: 27 Copynumber: 9.4 Consensus size: 27
46648720 ATTACTATTT
* *
46648730 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGGTTTACAAAATTACCAAAA
46648757 TACCCTCGGTTTACAAAATTACCAAAA
1 TACCCTCGGTTTACAAAATTACCAAAA
* * *
46648784 TACCCTC-GATCAGTAAAATTACCAAAA
1 TACCCTCGGTTTA-CAAAATTACCAAAA
* * ** * *
46648811 TACCCT-AGTATGTAAAATTGCTAAAA
1 TACCCTCGGTTTACAAAATTACCAAAA
* ** *
46648837 TACCCTTGGTTTGTAAAATTACCGAAA
1 TACCCTCGGTTTACAAAATTACCAAAA
** **
46648864 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGGTTTACAAAATTACCAAAA
* *
46648891 TACCC-CTGATTTACAAAGTTA-CAGAAA
1 TACCCTC-GGTTTACAAAATTACCA-AAA
* * ***
46648918 TACCCTTGACTTT-CTAAAAATTATGGAAA
1 TACCCTCG-GTTTAC--AAAATTACCAAAA
* * * *
46648947 TACCATTGGTTTAAAAAATTACTAAAA
1 TACCCTCGGTTTACAAAATTACCAAAA
*
46648974 TACCCTTGGTTT
1 TACCCTCGGTTT
46648986 GTAGATTTAC
Statistics
Matches: 182, Mismatches: 36, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
26 24 0.13
27 136 0.75
28 6 0.03
29 16 0.09
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTCGGTTTACAAAATTACCAAAA
Found at i:46648788 original size:54 final size:54
Alignment explanation
Indices: 46648730--46648923 Score: 171
Period size: 54 Copynumber: 3.6 Consensus size: 54
46648720 ATTACTATTT
* *
46648730 TACCCTCGATTTACAAAATTACTAAAATACCCTCGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGGTTTGCAAAATTACCAAAA
* * * * * * *
46648784 TACCCTCGA-TCAGTAAAATTACCAAAATACCCT-AGTATGTAAAATTGCTAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAATACCCTCGGTTTGCAAAATTACCAAAA
* * ** * ** *
46648837 TACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGGTTTGCAAAATTACCAAAA
*
46648891 TACCC-CTGATTTACAAAGTTA-CAGAAATACCCT
1 TACCCTC-GATTTACAAAATTACCA-AAATACCCT
46648924 TGACTTTCTA
Statistics
Matches: 111, Mismatches: 24, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
53 43 0.39
54 68 0.61
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTCGGTTTGCAAAATTACCAAAA
Found at i:46648836 original size:26 final size:26
Alignment explanation
Indices: 46648744--46648895 Score: 151
Period size: 27 Copynumber: 5.7 Consensus size: 26
46648734 CTCGATTTAC
* * **
46648744 AAAATTACTAAAATACCCTCGGTTTAC
1 AAAATTACCAAAATACCCT-AGTTTGT
* **
46648771 AAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCTAG-TTTGT
*
46648798 AAAATTACCAAAATACCCTAGTATGT
1 AAAATTACCAAAATACCCTAGTTTGT
* * *
46648824 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCC-TAGTTTGT
* *
46648851 AAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCT-AGTTTGT
46648878 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
46648896 CTGATTTACA
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 21 0.20
27 82 0.80
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.28
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAGTTTGT
Found at i:46648855 original size:80 final size:80
Alignment explanation
Indices: 46648744--46648895 Score: 232
Period size: 80 Copynumber: 1.9 Consensus size: 80
46648734 CTCGATTTAC
*
46648744 AAAATTACTAAAATACCCTCGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCTCGGTTTACAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
46648809 AATACCCTAGTATGT
66 AATACCCTAGTATGT
* * ** * **
46648824 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCTCGGTTTACAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
46648889 AATACCC
66 AATACCC
46648896 CTGATTTACA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.28
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTCGGTTTACAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
AATACCCTAGTATGT
Found at i:46649080 original size:27 final size:27
Alignment explanation
Indices: 46649039--46649125 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
46649029 ACCCCTATTA
* *
46649039 GGTAAAAAGATCGTAAAGCCCTTGTAG
1 GGTAAAGAGATCGTAAAGCCCCTGTAG
* *
46649066 GGTAAAGAGACCGTAAAGCCCCTGTCG
1 GGTAAAGAGATCGTAAAGCCCCTGTAG
* *
46649093 GGTAAAGTGATCGTAATA-CCCCTGTAT
1 GGTAAAGAGATCGTAA-AGCCCCTGTAG
46649120 GGTAAA
1 GGTAAA
46649126 ATGACGAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.22
Consensus pattern (27 bp):
GGTAAAGAGATCGTAAAGCCCCTGTAG
Found at i:46649958 original size:26 final size:26
Alignment explanation
Indices: 46649929--46650065 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
46649919 GAGGAAGTGC
*
46649929 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
46649955 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
46649981 AAAAGGGCTTATGGCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
46650007 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
46650033 GAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
46650056 AAAAGAGGCT
1 AAAAG-GGCT
46650066 AGGCCTCCAG
Statistics
Matches: 101, Mismatches: 9, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
23 4 0.04
24 7 0.07
25 8 0.08
26 82 0.81
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:46650340 original size:31 final size:31
Alignment explanation
Indices: 46650263--46650341 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
46650253 CGTTTACAGT
* *
46650263 AAAGGCTTCGGCTCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
46650294 AAAGGCTTCGGCCCAGTTATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
46650325 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
46650342 AACCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:46656881 original size:18 final size:17
Alignment explanation
Indices: 46656856--46656889 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
46656846 ATCAAAATAA
46656856 AAATATGTTTCAAGGAT
1 AAATATGTTTCAAGGAT
46656873 AAATCATGTTTCAAGGA
1 AAAT-ATGTTTCAAGGA
46656890 CTTCAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (17 bp):
AAATATGTTTCAAGGAT
Found at i:46660735 original size:6 final size:6
Alignment explanation
Indices: 46660713--46660772 Score: 50
Period size: 6 Copynumber: 10.0 Consensus size: 6
46660703 AAGGTGAATT
* * * * *
46660713 AATAAA AACATAA AATAAA AATAGA AATGAT AATAAA AATAAA TAT-AA
1 AATAAA AATA-AA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
*
46660761 AATAAA ATTAAA
1 AATAAA AATAAA
46660773 CATCATCATC
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
5 4 0.10
6 32 0.78
7 5 0.12
ACGTcount: A:0.73, C:0.02, G:0.03, T:0.22
Consensus pattern (6 bp):
AATAAA
Found at i:46662791 original size:55 final size:55
Alignment explanation
Indices: 46662657--46662800 Score: 144
Period size: 55 Copynumber: 2.6 Consensus size: 55
46662647 TCACTTCTCC
* **
46662657 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCATGGTTGCTTGGCACAGACGTGTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGTTGCAAGGCACAGACGTGTCG
* ** * ** ** * * * *
46662712 TACGTTCATGTTAATTTGATAGGTTCGGCCACGGTTTCAAGGCACGGGCGTGTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGTTGCAAGGCACAGACGTGTCG
*
46662767 CACGCCCGTGTTGTTTTGGCAGGTTTGCCCACGG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGG
46662801 CCATGTCATA
Statistics
Matches: 64, Mismatches: 25, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
55 64 1.00
ACGTcount: A:0.13, C:0.25, G:0.32, T:0.30
Consensus pattern (55 bp):
CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGTTGCAAGGCACAGACGTGTCG
Found at i:46668790 original size:53 final size:54
Alignment explanation
Indices: 46668709--46668913 Score: 223
Period size: 53 Copynumber: 3.8 Consensus size: 54
46668699 TTTCCTTTTT
* * * *
46668709 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCTTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* * *
46668762 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* ** * * * *
46668816 GTAACTCATCAATGCCATGTATTGACATGGTCTTACATGATTTCCTTACCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* * * * *
46668871 GAACTGATCAATGCCATGCCTTGGCATGATCTTACATGATATC
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
46668914 CTTATCTTAC
Statistics
Matches: 127, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
53 46 0.36
54 37 0.29
55 44 0.35
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
Found at i:46668846 original size:55 final size:54
Alignment explanation
Indices: 46668720--46668908 Score: 220
Period size: 55 Copynumber: 3.5 Consensus size: 54
46668710 AACTTACCAT
* * * *
46668720 TGCCATGTCTTGACATGGTCTTACGTGGTATCTTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
* *
46668773 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAA
** * * * *
46668828 TGCCATGTATTGACATGGTCTTACATGATTTCC-TTACCTTATAGAACTGATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTTGCCTTATAGAACTCATCAA
* *
46668882 TGCCATGCCTTGGCATGATCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
46668909 ATATCCTTAT
Statistics
Matches: 115, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 37 0.32
54 33 0.29
55 43 0.37
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
Found at i:46668905 original size:54 final size:54
Alignment explanation
Indices: 46668720--46668922 Score: 221
Period size: 54 Copynumber: 3.8 Consensus size: 54
46668710 AACTTACCAT
* * * * * *
46668720 TGCCATGTCTTGACATGGTCTTACGTGGTATCTTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATAGAACTCATCAA
* ** *
46668773 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTACCTTATAG-AACTCATCAA
** * *
46668828 TGCCATGTATTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTGATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATAGAACTCATCAA
* * *
46668882 TGCCATGCCTTGGCATGATCTTACATGATATCCTTATCTTA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTA
46668923 CCAAATGCCT
Statistics
Matches: 126, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 1 0.01
53 35 0.28
54 45 0.36
55 43 0.34
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATAGAACTCATCAA
Found at i:46668954 original size:47 final size:47
Alignment explanation
Indices: 46668895--46669016 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
46668885 CATGCCTTGG
* * *
46668895 CATGATCTTACATGATATCCTTATCTTACCAAATGCCTTGATCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGATCCAAA
* *
46668942 CATGGTTTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGATCCAAA
* *
46668989 CATGGTCTTACATGGCATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
46669017 GTGCCAATGC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGATCCAAA
Found at i:46669091 original size:47 final size:45
Alignment explanation
Indices: 46668988--46669143 Score: 143
Period size: 47 Copynumber: 3.4 Consensus size: 45
46668978 CATGTTCCAA
* * * **
46668988 ACATGGTCTTACATGGCATCCTTGTCTTAGTGCCAATGCCACATCTTG
1 ACATGGTCTTACATGGGATCCTTG-C--AATACCAATGCCATGTCTTG
** * * *
46669036 ATGTGGTCTTACAT-GGAGTCCTTAATCAATGCCGATGCCATGTCTTG
1 ACATGGTCTTACATGGGA-TCCTT--GCAATACCAATGCCATGTCTTG
**
46669083 ACATGGTCTTACATGGGATCCTTGCCTTACCAATGCCATGTCTTG
1 ACATGGTCTTACATGGGATCCTTGCAATACCAATGCCATGTCTTG
46669128 ACATGGTCTTACATGG
1 ACATGGTCTTACATGG
46669144 TACAATTCCT
Statistics
Matches: 89, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
45 33 0.37
47 35 0.39
48 20 0.22
49 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.33
Consensus pattern (45 bp):
ACATGGTCTTACATGGGATCCTTGCAATACCAATGCCATGTCTTG
Found at i:46671388 original size:29 final size:29
Alignment explanation
Indices: 46671345--46671413 Score: 129
Period size: 29 Copynumber: 2.4 Consensus size: 29
46671335 AATCCAACAT
46671345 ACCTGTGTGGTACCCCTTTGGGCCCACAC
1 ACCTGTGTGGTACCCCTTTGGGCCCACAC
*
46671374 GCCTGTGTGGTACCCCTTTGGGCCCACAC
1 ACCTGTGTGGTACCCCTTTGGGCCCACAC
46671403 ACCTGTGTGGT
1 ACCTGTGTGGT
46671414 CCACACAGCC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.12, C:0.35, G:0.28, T:0.26
Consensus pattern (29 bp):
ACCTGTGTGGTACCCCTTTGGGCCCACAC
Found at i:46672953 original size:22 final size:23
Alignment explanation
Indices: 46672920--46672963 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
46672910 AATGAAAAAG
46672920 ATAAAATAAAGAAATA-AAAGTTA
1 ATAAAATAAAGAAA-ACAAAGTTA
46672943 ATAAAAT-AAGAAAACAAAGTT
1 ATAAAATAAAGAAAACAAAGTT
46672964 TCTCTTCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 1 0.05
22 12 0.60
23 7 0.35
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.20
Consensus pattern (23 bp):
ATAAAATAAAGAAAACAAAGTTA
Found at i:46686789 original size:28 final size:29
Alignment explanation
Indices: 46686747--46686867 Score: 138
Period size: 28 Copynumber: 4.2 Consensus size: 29
46686737 AGCATGACTG
46686747 TAAATGTGATTTGGGCCTAAT-GGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
*
46686775 TGAATGTGATTTGGGCCTAATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
* * *
46686804 TAAATATGATTTGGGCGTTATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
* * * * *
46686833 CAAAAGAGA-TTGGGCCTAGTGGGCTATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
*
46686861 TACATGT
1 TAAATGT
46686868 ATGTGGATTT
Statistics
Matches: 75, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 38 0.51
29 37 0.49
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (29 bp):
TAAATGTGATTTGGGCCTAATGGGCCATA
Found at i:46690585 original size:16 final size:16
Alignment explanation
Indices: 46690561--46690599 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
46690551 GTAGATCGGC
46690561 AAAAGCCAAAATGCCG
1 AAAAGCCAAAATGCCG
*
46690577 AATAGCCAAAATGCCG
1 AAAAGCCAAAATGCCG
46690593 AAAAGCC
1 AAAAGCC
46690600 GAAAGTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.26, G:0.18, T:0.08
Consensus pattern (16 bp):
AAAAGCCAAAATGCCG
Found at i:46690858 original size:28 final size:29
Alignment explanation
Indices: 46690818--46690924 Score: 155
Period size: 29 Copynumber: 3.8 Consensus size: 29
46690808 CATGATTGTA
46690818 AATGTGATTTGGGCCTAAT-GGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
*
46690846 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATG
*
46690875 AATGTGATTTGGGCCTCATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* * *
46690904 AAAGAGA-TTGGGCCTAGTGGG
1 AATGTGATTTGGGCCTAATGGG
46690925 TTAGATACAG
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
28 31 0.44
29 40 0.56
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.29
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATG
Found at i:46690915 original size:57 final size:57
Alignment explanation
Indices: 46690816--46690924 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 57
46690806 AGCATGATTG
* *
46690816 TAAATGTGATTTGGGCCTAATGGCCATATGAATGTGATTTGGGCCTAATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCATA
* *
46690873 TAAATGTGATTTGGGCCTCATGGGCCATATGAAAGAGA-TTGGGCCTAGTGGG
1 TAAATGTGATTTGGGCCTAAT-GGCCATATGAAAGAGATTTGGGCCTAATGGG
46690925 TTAGATACAG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
57 33 0.70
58 14 0.30
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (57 bp):
TAAATGTGATTTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCATA
Found at i:46693527 original size:22 final size:22
Alignment explanation
Indices: 46693497--46693555 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
46693487 CCTGAGCTGA
*
46693497 TGAATAGTAAGCTC-TATCGAGC
1 TGAACAGTAAGCTCATA-CGAGC
*
46693519 TGAACAGTAAGTTCATACGAGC
1 TGAACAGTAAGCTCATACGAGC
*
46693541 TAAAACAGTAAGCTC
1 T-GAACAGTAAGCTC
46693556 CAATGAGCTG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 18 0.58
23 13 0.42
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (22 bp):
TGAACAGTAAGCTCATACGAGC
Found at i:46701125 original size:46 final size:48
Alignment explanation
Indices: 46701074--46701204 Score: 157
Period size: 47 Copynumber: 2.8 Consensus size: 48
46701064 ATGGTTGAGC
*
46701074 ATCCGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACTAG
* * *
46701121 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTA-G
46701166 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46701205 GCGGGTTACA
Statistics
Matches: 70, Mismatches: 6, Indels: 13
0.79 0.07 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 28 0.40
47 29 0.41
48 2 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTAG
Found at i:46708015 original size:47 final size:47
Alignment explanation
Indices: 46707961--46708493 Score: 985
Period size: 47 Copynumber: 11.3 Consensus size: 47
46707951 AGGGGTGTCA
46707961 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
46708008 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
46708055 TACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
46708102 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
46708149 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
46708196 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
46708243 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
46708292 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
46708339 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
46708386 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
46708433 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
46708480 CACATATATACACT
1 CACATATATACACT
46708494 GTCTTGGCCG
Statistics
Matches: 474, Mismatches: 10, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
47 428 0.90
49 46 0.10
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:46717440 original size:6 final size:6
Alignment explanation
Indices: 46717429--46717600 Score: 129
Period size: 6 Copynumber: 27.8 Consensus size: 6
46717419 TATCATAACT
* * * *
46717429 AGAATC AGAATC AGAATC AGAATC AG-GTGAC AAAATC AAAATC AGAACC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * *
46717478 AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC AGGTAA-C AGAATT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * *
46717528 AGAATC AGAACC AGAATC AGAATT AGGTAAT- AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
46717577 AGGTAA-C AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
46717601 GTGAATGCAA
Statistics
Matches: 134, Mismatches: 17, Indels: 30
0.74 0.09 0.17
Matches are distributed among these distances:
5 10 0.07
6 104 0.78
7 12 0.09
8 8 0.06
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:46717441 original size:18 final size:18
Alignment explanation
Indices: 46717429--46717600 Score: 129
Period size: 19 Copynumber: 9.3 Consensus size: 18
46717419 TATCATAACT
46717429 AGAATCAGAATCAGAATC
1 AGAATCAGAATCAGAATC
* *
46717447 AGAATCAG-GTGACAAAATC
1 AGAATCAGAAT--CAGAATC
* *
46717466 AAAATCAGAACCAGAATC
1 AGAATCAGAATCAGAATC
*
46717484 AGAATTAGGTAA-CAGAATC
1 AGAATCA-G-AATCAGAATC
*
46717503 AGAATCAGTATCAGGTAA-C
1 AGAATCAGAATCA-G-AATC
* *
46717522 AGAATTAGAATCAGAACC
1 AGAATCAGAATCAGAATC
*
46717540 AGAATCAGAATTAGGTAAT-
1 AGAATCAGAATCA-G-AATC
*
46717559 AGAATCAGAATCAGTATC
1 AGAATCAGAATCAGAATC
46717577 AGGTAA-CAGAATCAGAATC
1 A-G-AATCAGAATCAGAATC
46717596 AGAAT
1 AGAAT
46717601 GTGAATGCAA
Statistics
Matches: 121, Mismatches: 18, Indels: 30
0.72 0.11 0.18
Matches are distributed among these distances:
17 8 0.07
18 38 0.31
19 67 0.55
20 8 0.07
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (18 bp):
AGAATCAGAATCAGAATC
Found at i:46717473 original size:37 final size:37
Alignment explanation
Indices: 46717431--46717516 Score: 118
Period size: 37 Copynumber: 2.3 Consensus size: 37
46717421 TCATAACTAG
*
46717431 AATCAGAATCAGAATCAGAATCAGGTGACAAAATCAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAAAATCAA
* * * *
46717468 AATCAGAACCAGAATCAGAATTAGGTAACAGAATCAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAAAATCAA
*
46717505 AATCAGTATCAG
1 AATCAGAATCAG
46717517 GTAACAGAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.17
Consensus pattern (37 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAAAATCAA
Found at i:46717499 original size:25 final size:25
Alignment explanation
Indices: 46717471--46717537 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
46717461 AAATCAAAAT
* *
46717471 CAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
46717496 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
46717521 CAGAATTAGAATCAGAA
1 CAGAATCAGAATCAGAA
46717538 CCAGAATCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:46717510 original size:62 final size:62
Alignment explanation
Indices: 46717434--46717599 Score: 278
Period size: 62 Copynumber: 2.7 Consensus size: 62
46717424 TAACTAGAAT
* * * *
46717434 CAGAATCAGAATCAGAATCAGGTGACAAAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
*
46717496 CAGAATCAGAATCAGTATCAGGTAACAGAATTAGAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
*
46717558 TAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
46717600 TGTGAATGCA
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 97 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
Found at i:46717568 original size:25 final size:25
Alignment explanation
Indices: 46717521--46717600 Score: 101
Period size: 25 Copynumber: 3.2 Consensus size: 25
46717511 TATCAGGTAA
*
46717521 CAGAATTA-G-AATCAGAACCAGAAT
1 CAGAATTAGGTAAT-AGAATCAGAAT
46717545 CAGAATTAGGTAATAGAATCAGAAT
1 CAGAATTAGGTAATAGAATCAGAAT
* * *
46717570 CAGTATCAGGTAACAGAATCAGAAT
1 CAGAATTAGGTAATAGAATCAGAAT
46717595 CAGAAT
1 CAGAAT
46717601 GTGAATGCAA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
24 8 0.16
25 38 0.78
26 3 0.06
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (25 bp):
CAGAATTAGGTAATAGAATCAGAAT
Found at i:46718005 original size:27 final size:27
Alignment explanation
Indices: 46717975--46718222 Score: 252
Period size: 27 Copynumber: 9.2 Consensus size: 27
46717965 AGGTATCTCG
*
46717975 GTAATTCCACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTATAGGGGTATTTTA
* *
46718002 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTATAGGGGTATTTTA
**
46718029 GTAATTCTACCCTATAGGGGTA-TTGC
1 GTAATTCTACCCTATAGGGGTATTTTA
* **
46718055 GATAATTCTACCCTACAGGGGTATTTCG
1 G-TAATTCTACCCTATAGGGGTATTTTA
* **
46718083 GTAATTCTACCCTACAGGGGTA-TTCG
1 GTAATTCTACCCTATAGGGGTATTTTA
*
46718109 GTAATTCTACCTTACTA-GGGTATTTTA
1 GTAATTCTACCCTA-TAGGGGTATTTTA
* *
46718136 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTATAGGGGTATTTTA
* ** * *
46718163 GTAATTTTA-CAAACTAGGGGTGTTTTG
1 GTAATTCTACCCTA-TAGGGGTATTTTA
* *
46718190 GTAATTCTACCATATAGGGGTATTTCA
1 GTAATTCTACCCTATAGGGGTATTTTA
46718217 GTAATT
1 GTAATT
46718223 TCACGATCGA
Statistics
Matches: 187, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
26 28 0.15
27 153 0.82
28 6 0.03
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTATAGGGGTATTTTA
Found at i:46718033 original size:54 final size:55
Alignment explanation
Indices: 46717974--46718222 Score: 303
Period size: 54 Copynumber: 4.6 Consensus size: 55
46717964 AAGGTATCTC
* *
46717974 GGTAATTCCACCCTATAGGGGTATTTTAGTAATTCTACCCTAC-AGGGGTATTTT
1 GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACTAGGGGTATTTT
* *
46718028 GGTAATTCTACCCTATAGGGGTATTGC-GATAATTCTACCCTAC-AGGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTATTTCAG-TAATTCTACCCTACTAGGGGTATTTT
* * *
46718082 GGTAATTCTACCCTACAGGGGTA-TTCGGTAATTCTACCTTACTA-GGGTATTTT
1 GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACTAGGGGTATTTT
* * * * * ** *
46718135 AGTAATTCTACCCTACAAGGGTATTTTAGTAATTTTA-CAAACTAGGGGTGTTTT
1 GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACTAGGGGTATTTT
*
46718189 GGTAATTCTACCATATAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTATAGGGGTATTTCAGTAATT
46718223 TCACGATCGA
Statistics
Matches: 169, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
53 50 0.30
54 119 0.70
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (55 bp):
GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACTAGGGGTATTTT
Found at i:46718195 original size:134 final size:134
Alignment explanation
Indices: 46717948--46718222 Score: 349
Period size: 134 Copynumber: 2.1 Consensus size: 134
46717938 AGGGCACAAT
*
46717948 GGTAATTTTACCCCACAAGGTATCTCGGTAATTCCACCCTATAGGGGTATTTTAGTAATTCTACC
1 GGTAATTCTACCCCACAAGGTATCTCGGTAATTCCACCCTATAGGGGTATTTTAGTAATTCTACC
* * ** *
46718013 CTACAGGGGTATTTTGGTAATTCTACCCTATAGGGGTATTGCGATAATTCTACCCTACAGGGGTA
66 CTACAAGGGTATTTTAGTAATTCTACCAAATAGGGGTATTGCGATAATTCTACCATACAGGGGTA
46718078 TTTC
131 TTTC
* * * *
46718082 GGTAATTCTACCCTACAGGGGTAT-TCGGTAATTCTACCTTACTA-GGGTATTTTAGTAATTCTA
1 GGTAATTCTACCCCACA-AGGTATCTCGGTAATTCCACCCTA-TAGGGGTATTTTAGTAATTCTA
* * ** * *
46718145 CCCTACAAGGGTATTTTAGTAATTTTA-CAAACTAGGGGTGTTTTGGTAATTCTACCATATAGGG
64 CCCTACAAGGGTATTTTAGTAATTCTACCAAA-TAGGGGTATTGCGATAATTCTACCATACAGGG
46718209 GTATTTC
128 GTATTTC
*
46718216 AGTAATT
1 GGTAATT
46718223 TCACGATCGA
Statistics
Matches: 121, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
133 2 0.02
134 112 0.93
135 7 0.06
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (134 bp):
GGTAATTCTACCCCACAAGGTATCTCGGTAATTCCACCCTATAGGGGTATTTTAGTAATTCTACC
CTACAAGGGTATTTTAGTAATTCTACCAAATAGGGGTATTGCGATAATTCTACCATACAGGGGTA
TTTC
Found at i:46718265 original size:27 final size:27
Alignment explanation
Indices: 46718228--46718643 Score: 309
Period size: 27 Copynumber: 15.4 Consensus size: 27
46718218 TAATTTCACG
** * *
46718228 ATCGAGGGTAAAACGGTAATTTTGTAA
1 ATCGAGGGTAAAATAGTAATTCTATAA
*
46718255 ATCAAGGGTAAAATAGTAATTCTATAA
1 ATCGAGGGTAAAATAGTAATTCTATAA
46718282 ATCGAGGGTAAAATAGTAATTCTATAA
1 ATCGAGGGTAAAATAGTAATTCTATAA
*** * *
46718309 ATCGAGGGTACTTTGGTAATT-TTTACCA
1 ATCGAGGGTAAAATAGTAATTCTATA--A
** * *
46718337 ATCGAGGGT-ATTTCAGTAATTTTACAA
1 ATCGAGGGTAAAAT-AGTAATTCTATAA
* *** * *
46718364 ATCAGGGGGTATTTTAGTAATTTTACAA
1 ATC-GAGGGTAAAATAGTAATTCTATAA
* *** * *
46718392 A-CCAGGGGTATTTTAGTAATTTTCTAA
1 ATCGA-GGGTAAAATAGTAATTCTATAA
* * * *
46718419 TTCGAGGATAAAATGGTAATTCTCTAA
1 ATCGAGGGTAAAATAGTAATTCTATAA
*
46718446 ATCGAGGGTAAAATGGTAATTCTATAA
1 ATCGAGGGTAAAATAGTAATTCTATAA
* ** *
46718473 ATCGAGGGTAGAACGGTAATTCTGTAA
1 ATCGAGGGTAAAATAGTAATTCTATAA
* * *
46718500 ATTGAGGGTAAAATAGT-ATTTTCTAA
1 ATCGAGGGTAAAATAGTAATTCTATAA
* * * * *
46718526 TTCAAGGGTAAAATATTAACTCTGTAA
1 ATCGAGGGTAAAATAGTAATTCTATAA
* *
46718553 ATCGAGGGTAAAATAGTAATTTTCTAA
1 ATCGAGGGTAAAATAGTAATTCTATAA
* *
46718580 ATCGAGGGTAAAACAGTAATTCTGTAA
1 ATCGAGGGTAAAATAGTAATTCTATAA
* * *
46718607 ATCGAGGGTAAAATGGTAATTTTGTAA
1 ATCGAGGGTAAAATAGTAATTCTATAA
46718634 ATCGAGGGTA
1 ATCGAGGGTA
46718644 CTTTGATAAT
Statistics
Matches: 320, Mismatches: 60, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
26 23 0.07
27 255 0.80
28 37 0.12
29 5 0.02
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (27 bp):
ATCGAGGGTAAAATAGTAATTCTATAA
Found at i:46718301 original size:54 final size:54
Alignment explanation
Indices: 46718228--46718643 Score: 356
Period size: 54 Copynumber: 7.7 Consensus size: 54
46718218 TAATTTCACG
** * * *
46718228 ATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAA
1 ATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAA
* *** * *
46718282 ATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTACTTTGGTAATT-TTTACCA
1 ATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTA--A
** * * ***
46718337 ATCGAGGGT-ATTTCAGTAATTTTACAAATCAGGGGGTATTTTAGTAATT-T-TACA
1 ATCGAGGGTAAAAT-AGTAATTTTATAAATC-GAGGGTAAAATAGTAATTCTGTA-A
* * *** * * * * *
46718391 AACCAGGGGTATTTTAGTAATTTTCTAATTCGAGGATAAAATGGTAATTCTCTAA
1 ATCGA-GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAA
* * * **
46718446 ATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAGAACGGTAATTCTGTAA
1 ATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAA
* * * * * *
46718500 ATTGAGGGTAAAATAGT-ATTTTCTAATTCAAGGGTAAAATATTAACTCTGTAA
1 ATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAA
* *
46718553 ATCGAGGGTAAAATAGTAATTTTCTAAATCGAGGGTAAAACAGTAATTCTGTAA
1 ATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAA
* *
46718607 ATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 ATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTA
46718644 CTTTGATAAT
Statistics
Matches: 292, Mismatches: 61, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
53 46 0.16
54 177 0.61
55 48 0.16
56 21 0.07
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (54 bp):
ATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAA
Found at i:46718318 original size:107 final size:107
Alignment explanation
Indices: 46718228--46718643 Score: 309
Period size: 107 Copynumber: 3.9 Consensus size: 107
46718218 TAATTTCACG
* * *
46718228 ATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAA
1 ATCGAGGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAA
* * ** * * * *
46718293 AATAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACCA
66 AATAGTAATTTTCTAAATCGAGGGTA-AATAGTAACTTCT-CAA
*** * * **** * * *
46718337 ATCGAGGGTATTTCAGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACAAA-CCAGGGGT
1 ATCGAGGGTAAAACAGTAATTTTATAAATCA-AGGGTAAAACAGTAATTCTATAAATCGA-GGGT
*** * * *
46718401 ATTTTAGTAATTTTCTAATTCGAGGATAAAATGGTAA-TTCTCTAA
64 AAAATAGTAATTTTCTAAATCGAGGGT-AAATAGTAACTTCTC-AA
** * * * * * *
46718446 ATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAGAACGGTAATTCTGTAAATTGAGGGTAA
1 ATCGAGGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAA
* * * *
46718511 AATAGT-ATTTTCTAATTCAAGGGTAAAATATTAAC-TCTGTAA
66 AATAGTAATTTTCTAAATCGAGGGT-AAATAGTAACTTCT-CAA
* * * *
46718553 ATCGAGGGTAAAATAGTAATTTTCTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAA
1 ATCGAGGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAA
* *
46718618 AATGGTAATTTTGTAAATCGAGGGTA
66 AATAGTAATTTTCTAAATCGAGGGTA
46718644 CTTTGATAAT
Statistics
Matches: 238, Mismatches: 61, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
107 94 0.39
108 40 0.17
109 55 0.23
110 48 0.20
111 1 0.00
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (107 bp):
ATCGAGGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAA
AATAGTAATTTTCTAAATCGAGGGTAAATAGTAACTTCTCAA
Found at i:46718357 original size:55 final size:53
Alignment explanation
Indices: 46718281--46718482 Score: 138
Period size: 55 Copynumber: 3.7 Consensus size: 53
46718271 TAATTCTATA
** *
46718281 AATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACC
1 AATCGAGGGT-ATTTAGTAATTCTATAAATCGAGGGTAATTTGGTAATTTTTA-C
* * * * *
46718336 AATCGAGGGTATTTCAGTAATTTTACAAATCAGGGGGTATTTTAGTAA-TTTTAC
1 AATCGAGGGTATTT-AGTAATTCTATAAATC-GAGGGTAATTTGGTAATTTTTAC
* * * * * * ** *
46718390 AAACCAGGGGTATTTTAGTAATTTTCTAATTCGAGGATAAAATGGTAATTCTCTA-
1 AATCGA-GGGTA-TTTAGTAATTCTATAAATCGAGGGTAATTTGGTAATT-TTTAC
** *
46718445 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGT-ATTTAGTAATTCTATAAATCGAGGGTA
46718483 GAACGGTAAT
Statistics
Matches: 112, Mismatches: 28, Indels: 15
0.72 0.18 0.10
Matches are distributed among these distances:
54 40 0.36
55 53 0.47
56 19 0.17
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.35
Consensus pattern (53 bp):
AATCGAGGGTATTTAGTAATTCTATAAATCGAGGGTAATTTGGTAATTTTTAC
Found at i:46718467 original size:191 final size:188
Alignment explanation
Indices: 46718152--46718509 Score: 470
Period size: 191 Copynumber: 1.9 Consensus size: 188
46718142 CTACCCTACA
* * * * *
46718152 AGGGTATTTTAGTAATTTTACAAACTAGGGGTGTTTTGGTAATTCTACCATATAGGGGTATTTCA
1 AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTCTACCAAACAGGGGTATTTCA
* * *
46718217 GTAATTTCACGATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAA
66 GTAATTTCAC-ATCGAGGATAAAACGGTAATTCTCTAAATCAAGGGTAAAATAGTAATTCTATAA
*
46718282 ATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACCAATCG
130 ATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACCAATCG
*
46718341 AGGGTATTTCAGTAATTTTACAAA-TCAGGGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATT
1 AGGGTATTTCAGTAATTTTACAAACT-A-GGGGTATTTTAGTAATTCTACCAAA-CAGGGGTATT
* * * *
46718404 TTAGTAATTTTCTA-ATTCGAGGATAAAATGGTAATTCTCTAAATCGAGGGTAAAATGGTAATTC
63 TCAGTAA-TTTC-ACA-TCGAGGATAAAACGGTAATTCTCTAAATCAAGGGTAAAATAGTAATTC
* * * *
46718468 TATAAATCGAGGGTAGAACGGTAATTCTGTAAATTGAGGGTA
125 TATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTA
46718510 AAATAGTATT
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
188 1 0.01
189 27 0.19
190 33 0.23
191 83 0.57
192 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (188 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTCTACCAAACAGGGGTATTTCA
GTAATTTCACATCGAGGATAAAACGGTAATTCTCTAAATCAAGGGTAAAATAGTAATTCTATAAA
TCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACCAATCG
Found at i:46718653 original size:27 final size:27
Alignment explanation
Indices: 46718623--46718767 Score: 118
Period size: 27 Copynumber: 5.4 Consensus size: 27
46718613 GGTAAAATGG
**
46718623 TAATTTTGTAAATCGAGGGTACTTT-GA
1 TAATTTTACAAATCGAGGGTA-TTTCGA
** * *
46718650 TAATTTTACATGTTGAGGG-ATTTCAA
1 TAATTTTACAAATCGAGGGTATTTCGA
*
46718676 TAATTTTGCAAA-CTGAGGGTATTTCGA
1 TAATTTTACAAATC-GAGGGTATTTCGA
* * *
46718703 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAAATCGAGGGTATTTCGA
* * *
46718730 TAATTTTATAAACCGAGGGTACTTT-GG
1 TAATTTTACAAATCGAGGGTA-TTTCGA
46718757 TAATTTTACAA
1 TAATTTTACAA
46718768 CTGAGGATAT
Statistics
Matches: 94, Mismatches: 19, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
25 3 0.03
26 16 0.17
27 71 0.76
28 4 0.04
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCGA
Found at i:46718668 original size:54 final size:52
Alignment explanation
Indices: 46718605--46718767 Score: 132
Period size: 54 Copynumber: 3.0 Consensus size: 52
46718595 GTAATTCTGT
46718605 AAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTACTTTGATAATTTTAC
1 AAATCGAGGGT-AAATGGTAATTTTGTAAA-CGAGGGTACTTTGATAATTTTAC
** * ** ** *
46718659 ATGTTGAGGG-ATTTCAATAATTTTGCAAACTGAGGGTA-TTTCGATAATTTTAC
1 AAATCGAGGGTAAAT-GGTAATTTTGTAAAC-GAGGGTACTTT-GATAATTTTAC
* ** * *
46718712 AAATCGAGGATATTTGGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTAC
1 AAATCGAGGGTAAAT-GGTAATTTTGTAAA-CGAGGGTACTTTGATAATTTTAC
46718766 AA
1 AA
46718768 CTGAGGATAT
Statistics
Matches: 85, Mismatches: 18, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
52 6 0.07
53 35 0.41
54 40 0.47
55 4 0.05
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (52 bp):
AAATCGAGGGTAAATGGTAATTTTGTAAACGAGGGTACTTTGATAATTTTAC
Found at i:46718692 original size:26 final size:27
Alignment explanation
Indices: 46718649--46718788 Score: 90
Period size: 27 Copynumber: 5.3 Consensus size: 27
46718639 GGGTACTTTG
***
46718649 ATAATTTTACATGTTGAGGG-ATTTCA
1 ATAATTTTACAAACTGAGGGTATTTCA
* *
46718675 ATAATTTTGCAAACTGAGGGTATTTCG
1 ATAATTTTACAAACTGAGGGTATTTCA
* **
46718702 ATAATTTTACAAA-TCGAGGATATTTGG
1 ATAATTTTACAAACT-GAGGGTATTTCA
* * * *
46718729 GTAATTTTATAAACCGAGGGTACTTT-G
1 ATAATTTTACAAACTGAGGGTA-TTTCA
* * *
46718756 GTAATTTTAC-AACTGAGGATATTTTA
1 ATAATTTTACAAACTGAGGGTATTTCA
*
46718782 GTAATTT
1 ATAATTT
46718789 GGTAAACTAA
Statistics
Matches: 93, Mismatches: 16, Indels: 10
0.78 0.13 0.08
Matches are distributed among these distances:
25 3 0.03
26 33 0.35
27 54 0.58
28 3 0.03
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
ATAATTTTACAAACTGAGGGTATTTCA
Found at i:46718795 original size:53 final size:53
Alignment explanation
Indices: 46718622--46718795 Score: 181
Period size: 53 Copynumber: 3.3 Consensus size: 53
46718612 GGGTAAAATG
* ** *
46718622 GTAATTTTGTAAATCGAGGGTACTTTGATAATTTTACATGTTGAGG-GATTTCA
1 GTAATTTTGTAAACCGAGGGTACTTTGATAATTTTACA-AATGAGGATATTTCA
* * * **
46718675 ATAATTTTGCAAACTGAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTGG
1 GTAATTTTGTAAACCGAGGGTACTTT-GATAATTTTACAAAT-GAGGATATTTCA
* * * *
46718729 GTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAACTGAGGATATTTTA
1 GTAATTTTGTAAACCGAGGGTACTTTGATAATTTTACAAATGAGGATATTTCA
*
46718782 GTAATTTGGTAAAC
1 GTAATTTTGTAAAC
46718796 TAAAGTATTC
Statistics
Matches: 98, Mismatches: 19, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
52 4 0.04
53 56 0.57
54 35 0.36
55 3 0.03
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (53 bp):
GTAATTTTGTAAACCGAGGGTACTTTGATAATTTTACAAATGAGGATATTTCA
Found at i:46720750 original size:18 final size:17
Alignment explanation
Indices: 46720722--46720755 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
46720712 GGCTTTAACC
46720722 CATTACAGAATAAGAAA
1 CATTACAGAATAAGAAA
*
46720739 CATTATCAGAATCAGAA
1 CATTA-CAGAATAAGAA
46720756 TCAGAATCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.21
Consensus pattern (17 bp):
CATTACAGAATAAGAAA
Found at i:46720752 original size:6 final size:6
Alignment explanation
Indices: 46720743--46720965 Score: 213
Period size: 6 Copynumber: 36.3 Consensus size: 6
46720733 AAGAAACATT
* *
46720743 ATCAGA ATCAGA ATCAGA ATCAGA ATCACA ATTAGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
46720791 ATCACA ATTAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
46720840 ACCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * *
46720890 ATCAGA ATCAGA ACCAGA ATCAGA ATTAGGTA AT-AGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
46720939 ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
46720966 GTGAATGCAA
Statistics
Matches: 179, Mismatches: 23, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
5 10 0.06
6 148 0.83
7 13 0.07
8 8 0.04
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:46720889 original size:62 final size:62
Alignment explanation
Indices: 46720800--46720964 Score: 294
Period size: 62 Copynumber: 2.7 Consensus size: 62
46720790 AATCACAATT
* * *
46720800 AGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
*
46720862 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAT
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
46720924 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
46720965 TGTGAATGCA
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 99 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (62 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
Found at i:46720965 original size:37 final size:37
Alignment explanation
Indices: 46720744--46720956 Score: 165
Period size: 37 Copynumber: 5.8 Consensus size: 37
46720734 AGAAACATTA
* *
46720744 TCAGAATCAGAATCAGAATCAGAATCA--CAATTAGAA
1 TCAGAATCAGAATCAGAATCAGAATCAGGTAA-CAGAA
* *
46720780 TCAGAATCAGAATCACAATTAGAATCA-G-AATCAGAA
1 TCAGAATCAGAATCAGAATCAGAATCAGGTAA-CAGAA
* * *
46720816 TCAG-GTGACAGAATCAAAATCAGAACCA-G-AATCAGAA
1 TCAGAAT--CAGAATCAGAATCAGAATCAGGTAA-CAGAA
* *
46720853 TTAGGTAA-CAGAATCAGAATCAGTATCAGGTAACAGAA
1 TCA-G-AATCAGAATCAGAATCAGAATCAGGTAACAGAA
* * *
46720891 TCAGAATCAGAACCAGAATCAGAATTAGGTAATAGAA
1 TCAGAATCAGAATCAGAATCAGAATCAGGTAACAGAA
*
46720928 TCAGAATCAGTATCAGGTAA-CAGAATCAG
1 TCAGAATCAGAATCA-G-AATCAGAATCAG
46720957 AATCAGAATG
Statistics
Matches: 146, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
35 1 0.01
36 38 0.26
37 85 0.58
38 18 0.12
39 4 0.03
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.19
Consensus pattern (37 bp):
TCAGAATCAGAATCAGAATCAGAATCAGGTAACAGAA
Found at i:46721418 original size:26 final size:27
Alignment explanation
Indices: 46721380--46721627 Score: 252
Period size: 27 Copynumber: 9.3 Consensus size: 27
46721370 GGGGCAAAAT
* * * *
46721380 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
46721406 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
46721433 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
46721460 GGTAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
46721487 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
46721514 AGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
46721540 GGTAATTCTACCTTACTA-GGGTATTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
* * ** * *
46721567 AGTAATTTTA-CAAACTAGGGGTGTTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
* *
46721594 GGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
46721621 AGTAATT
1 GGTAATT
46721628 TCACGATCGA
Statistics
Matches: 184, Mismatches: 33, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
26 41 0.22
27 141 0.77
28 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:46721679 original size:27 final size:27
Alignment explanation
Indices: 46721649--46721794 Score: 118
Period size: 27 Copynumber: 5.4 Consensus size: 27
46721639 GGTAAAATAG
**
46721649 TAATTTTGTAAATCAAGGGTACTTT-GA
1 TAATTTTACAAATCAAGGGTA-TTTCGA
** * *
46721676 TAATTTTACATGTCGAGGGTATTTCAA
1 TAATTTTACAAATCAAGGGTATTTCGA
*
46721703 TAATTTTGCAAA-CTAAGGGTATTTCGA
1 TAATTTTACAAATC-AAGGGTATTTCGA
* * * *
46721730 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAAATCAAGGGTATTTCGA
* * *
46721757 TAATTTTATAAACCAAGGGTACTTT-GG
1 TAATTTTACAAATCAAGGGTA-TTTCGA
46721784 TAATTTTACAA
1 TAATTTTACAA
46721795 CTGAGGATAT
Statistics
Matches: 94, Mismatches: 21, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
26 4 0.04
27 86 0.91
28 4 0.04
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
TAATTTTACAAATCAAGGGTATTTCGA
Found at i:46721707 original size:54 final size:53
Alignment explanation
Indices: 46721647--46721822 Score: 203
Period size: 54 Copynumber: 3.3 Consensus size: 53
46721637 AGGGTAAAAT
** *
46721647 AGTAATTTTGTAAATCAAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTC
1 AGTAATTTTGTAAA-CAAGGGTACTTTGATAATTTTACAAATCGAGGATATTTC
* * *
46721701 AATAATTTTGCAAACTAAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTG
1 AGTAATTTTGTAAAC-AAGGGTACTTT-GATAATTTTACAAATCGAGGATATTTC
* * * *
46721755 GGTAATTTTATAAACCAAGGGTACTTTGGTAATTTTACAACT-GAGGATATTTC
1 AGTAATTTTGTAAA-CAAGGGTACTTTGATAATTTTACAAATCGAGGATATTTC
*
46721808 AGTAATTTGGTAAAC
1 AGTAATTTTGTAAAC
46721823 TAAAGTATTC
Statistics
Matches: 102, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 25 0.25
54 72 0.71
55 4 0.04
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.38
Consensus pattern (53 bp):
AGTAATTTTGTAAACAAGGGTACTTTGATAATTTTACAAATCGAGGATATTTC
Found at i:46728740 original size:46 final size:46
Alignment explanation
Indices: 46728676--46728801 Score: 175
Period size: 46 Copynumber: 2.7 Consensus size: 46
46728666 AACTAGGCAT
* *
46728676 CCGAACTCGTTTAA-TTGAGTCCAAGTTCACTTATGGATGCGAACT-C
1 CCGAACTC-ATTAAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TGC
46728722 CCGAACTCATTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCATTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * *
46728768 CCGAGCTCGTTAAGTTGAGTCCGAGTTCGCTTAT
1 CCGAACTCATTAAGTTGAGTCCGAGTTCACTTAT
46728802 AGGAAGGTTA
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
45 5 0.07
46 68 0.93
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (46 bp):
CCGAACTCATTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:46733934 original size:25 final size:25
Alignment explanation
Indices: 46733906--46733973 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
46733896 TTCTGTACAT
* *
46733906 GTATGCTCATACGAGCTGTTAATTA
1 GTATGCTCATACGAGCTGTAAATCA
* *
46733931 GTATGCTC-TCATGAGCTATAAATCA
1 GTATGCTCAT-ACGAGCTGTAAATCA
* *
46733956 ATAAGCTCATACGAGCTG
1 GTATGCTCATACGAGCTG
46733974 AGAATCGGTA
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
24 1 0.03
25 31 0.94
26 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (25 bp):
GTATGCTCATACGAGCTGTAAATCA
Found at i:46733979 original size:25 final size:24
Alignment explanation
Indices: 46733951--46734019 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 24
46733941 ATGAGCTATA
* *
46733951 AATCAATAAGCTCATACGAGCTGAG
1 AATCAGTAAGCTCATACGAGCTG-C
* *
46733976 AATCGGTAAGCTC-TCGCGAGCTGC
1 AATCAGTAAGCTCAT-ACGAGCTGC
*
46734000 AATCAGTAAGCTTATACGAG
1 AATCAGTAAGCTCATACGAG
46734020 ACGGGAATCG
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
24 16 0.46
25 19 0.54
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (24 bp):
AATCAGTAAGCTCATACGAGCTGC
Found at i:46733997 original size:50 final size:49
Alignment explanation
Indices: 46733910--46734019 Score: 112
Period size: 50 Copynumber: 2.2 Consensus size: 49
46733900 GTACATGTAT
** * * * *
46733910 GCTCATACGAGCTGTTAATTAGTATGCTCTCATGAGCTATAAATCAATAA
1 GCTCATACGAGCTGAGAATCAGTAAGCTCTCACGAGCT-GAAATCAATAA
* * * *
46733960 GCTCATACGAGCTGAGAATCGGTAAGCTCTCGCGAGCTGCAATCAGTAA
1 GCTCATACGAGCTGAGAATCAGTAAGCTCTCACGAGCTGAAATCAATAA
*
46734009 GCTTATACGAG
1 GCTCATACGAG
46734020 ACGGGAATCG
Statistics
Matches: 49, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
49 18 0.37
50 31 0.63
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (49 bp):
GCTCATACGAGCTGAGAATCAGTAAGCTCTCACGAGCTGAAATCAATAA
Found at i:46735300 original size:25 final size:25
Alignment explanation
Indices: 46735252--46735300 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
46735242 GCATCTAAAG
*
46735252 TTGTTATATAGTATAGATATGTGTA
1 TTGTTATATAGTATAGATAGGTGTA
*
46735277 TTGTTATATA-TATTATATAGGTGT
1 TTGTTATATAGTA-TAGATAGGTGT
46735301 TTATGGGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (25 bp):
TTGTTATATAGTATAGATAGGTGTA
Found at i:46739053 original size:27 final size:27
Alignment explanation
Indices: 46739002--46739192 Score: 199
Period size: 27 Copynumber: 7.1 Consensus size: 27
46738992 GGTATTATAA
* * * *
46739002 TCATTTTACCCTATTGAGGTATTTCGA
1 TCATTTTACCTTATGGGGGTATTTCGG
* *
46739029 TCATTTTACTTTATGGGGGTTTTTCGG
1 TCATTTTACCTTATGGGGGTATTTCGG
* *
46739056 TGATTTTACCTTATGGGGATATTTCGG
1 TCATTTTACCTTATGGGGGTATTTCGG
* *
46739083 TCATTTTACCCTAAAGGGGGTATTTCGG
1 TCATTTTA-CCTTATGGGGGTATTTCGG
* * *
46739111 TTA-TTTAAC-TATGGGGGCATTTCGG
1 TCATTTTACCTTATGGGGGTATTTCGG
* *
46739136 TCATTTTACCATATGGGGGTATTTTGG
1 TCATTTTACCTTATGGGGGTATTTCGG
*
46739163 TCATTTTTACC-TATAGGGGTATTTCGG
1 TCA-TTTTACCTTATGGGGGTATTTCGG
46739190 TCA
1 TCA
46739193 CCATTTCAGC
Statistics
Matches: 135, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
25 15 0.11
26 6 0.04
27 89 0.66
28 25 0.19
ACGTcount: A:0.19, C:0.14, G:0.24, T:0.43
Consensus pattern (27 bp):
TCATTTTACCTTATGGGGGTATTTCGG
Found at i:46739136 original size:80 final size:79
Alignment explanation
Indices: 46739040--46739190 Score: 214
Period size: 80 Copynumber: 1.9 Consensus size: 79
46739030 CATTTTACTT
** * *
46739040 TATGGGGGTTTTTCGGTGATTTTACCTTATGGGGATATTTCGGTCA-TTTTACCCTAAAGGGGGT
1 TATGGGGGCATTTCGGTCATTTTACCATATGGGGATATTTCGGTCATTTTTA-CCTAAA-GGGGT
46739104 ATTTCGGTTATTTAAC
64 ATTTCGGTTATTTAAC
* * *
46739120 TATGGGGGCATTTCGGTCATTTTACCATATGGGGGTATTTTGGTCATTTTTACCTATAGGGGTAT
1 TATGGGGGCATTTCGGTCATTTTACCATATGGGGATATTTCGGTCATTTTTACCTAAAGGGGTAT
46739185 TTCGGT
66 TTCGGT
46739191 CACCATTTCA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 13 0.21
80 45 0.71
81 5 0.08
ACGTcount: A:0.18, C:0.13, G:0.27, T:0.42
Consensus pattern (79 bp):
TATGGGGGCATTTCGGTCATTTTACCATATGGGGATATTTCGGTCATTTTTACCTAAAGGGGTAT
TTCGGTTATTTAAC
Found at i:46743052 original size:27 final size:27
Alignment explanation
Indices: 46743010--46743208 Score: 229
Period size: 27 Copynumber: 7.4 Consensus size: 27
46743000 TGGATAAGTT
**
46743010 GTAGAATTGTCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
46743037 GTAGAATTATCAAAATACCCCTGCAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** *
46743064 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
46743091 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
46743118 ATAGAATTACCGAAATACCCTTGTA-G
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
46743144 GTAGAAATACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
46743171 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
46743198 GTAAAATTACC
1 GTAGAATTACC
46743209 ATTTTGCCCC
Statistics
Matches: 149, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 22 0.15
27 127 0.85
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:46743189 original size:80 final size:81
Alignment explanation
Indices: 46743010--46743209 Score: 258
Period size: 80 Copynumber: 2.5 Consensus size: 81
46743000 TGGATAAGTT
** * * * *
46743010 GTAGAATTGTCGAAATACCCCTGTAGGGTAGAATTATCAAAATACCCCTGCAGGGTAGAATTATT
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGCAGGGTAGAAATACT
46743075 GAAATACCCCTATAGG
66 GAAATACCCCTATAGG
* * * * *
46743091 ATAGAATTACCGAAATACCCTTGTAGGATAGAATTACCGAAATACCCTTGTA-GGTAGAAATACT
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGCAGGGTAGAAATACT
*
46743155 GAAATACCCCTGTAGG
66 GAAATACCCCTATAGG
* * *
46743171 GTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCA
46743210 TTTTGCCCCT
Statistics
Matches: 101, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
80 58 0.57
81 43 0.43
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (81 bp):
GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGCAGGGTAGAAATACT
GAAATACCCCTATAGG
Found at i:46744002 original size:27 final size:26
Alignment explanation
Indices: 46743950--46744009 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
46743940 CCACATATAT
*
46743950 ATATCTGTTCTGGTGGCGTAGCCACA
1 ATATCTGTTCTGGTGACGTAGCCACA
* * *
46743976 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACGTAGCCACA
46744003 ATATCTG
1 ATATCTG
46744010 GCAGCTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACGTAGCCACA
Found at i:46768113 original size:46 final size:46
Alignment explanation
Indices: 46768057--46768225 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
46768047 TGGTTGAGCA
*
46768057 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAAACG
* * * *
46768103 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAA--A--CG
* * *
46768150 TCCGAACTTGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAAACG
*
46768196 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCA
46768226 CTTAGGGGCG
Statistics
Matches: 102, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 55 0.54
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAAACG
Found at i:46768213 original size:93 final size:93
Alignment explanation
Indices: 46768054--46768224 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
46768044 GGATGGTTGA
*
46768054 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAAACGTCCGAACTCGTTGAGT
46768119 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
46768147 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAAACGTCC-GAACTCGTTGAG
46768211 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
46768225 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46772480 original size:18 final size:19
Alignment explanation
Indices: 46772448--46772486 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
46772438 AAAATTACCT
*
46772448 AAATAGCCCTTTAGGGTAG
1 AAATAGCCCTGTAGGGTAG
46772467 AAATA-CCCTGTAGGGTAG
1 AAATAGCCCTGTAGGGTAG
46772485 AA
1 AA
46772487 TTATCGAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (19 bp):
AAATAGCCCTGTAGGGTAG
Found at i:46772489 original size:45 final size:46
Alignment explanation
Indices: 46772420--46772518 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 46
46772410 TAGAATTACC
* * * *
46772420 GAAATACCTCTGTAGGGCAAAATTACCTAAATAGCCCTTTAGGGTA
1 GAAATACCTCTGTAGGGCAAAATTACCGAAATACCCCTTAAGGATA
* * *
46772466 GAAATACC-CTGTAGGGTAGAATTATCGAAATACCCCTTAAGGATA
1 GAAATACCTCTGTAGGGCAAAATTACCGAAATACCCCTTAAGGATA
*
46772511 GAATTACC
1 GAAATACC
46772519 GAAATACGCT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
45 37 0.82
46 8 0.18
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (46 bp):
GAAATACCTCTGTAGGGCAAAATTACCGAAATACCCCTTAAGGATA
Found at i:46772495 original size:26 final size:26
Alignment explanation
Indices: 46772466--46772591 Score: 97
Period size: 27 Copynumber: 5.0 Consensus size: 26
46772456 CTTTAGGGTA
*
46772466 GAAATACCCTGTAGGGTAGAATTATC
1 GAAATACCCTGTAGGGTAGAATTACC
*
46772492 GAAATACCCCT-TAAGGATAGAATTACC
1 GAAATA-CCCTGT-AGGGTAGAATTACC
* *
46772519 GAAATACGCTTGTAGGGTAGAAATA-C
1 GAAATAC-CCTGTAGGGTAGAATTACC
46772545 ------CCCTGTAGGGTAGAATTACC
1 GAAATACCCTGTAGGGTAGAATTACC
* * *
46772565 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCC-TGTAGGGTAGAATTACC
46772592 ATTTTGCCCC
Statistics
Matches: 79, Mismatches: 9, Indels: 23
0.71 0.08 0.21
Matches are distributed among these distances:
19 15 0.19
20 2 0.03
26 12 0.15
27 49 0.62
28 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (26 bp):
GAAATACCCTGTAGGGTAGAATTACC
Found at i:46772535 original size:72 final size:73
Alignment explanation
Indices: 46772409--46772591 Score: 221
Period size: 72 Copynumber: 2.5 Consensus size: 73
46772399 TGGATAAGTT
* * *
46772409 GTAGAATTACCGAAATACCTCTGTAGGGCAAAATTACCTAAATAGCCCTTTAGGGTAGAAATA-C
1 GTAGAATTACCGAAATACCCCTGTAAGGCAAAATTACCGAAATAGCCCTTTAGGGTAGAAATACC
46772473 CCTGTAGG
66 CCTGTAGG
* *
46772481 GTAGAATTATCGAAATACCCCT-TAAGG-ATAGAATTACCGAAATA-CGCTTGTAGGGTAGAAAT
1 GTAGAATTACCGAAATACCCCTGTAAGGCA-A-AATTACCGAAATAGCCCTT-TAGGGTAGAAAT
46772543 ACCCCTGTAGG
63 ACCCCTGTAGG
* * ** *
46772554 GTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 GTAGAATTACCGAAATACCCCTGTAAGGCAAAATTACC
46772592 ATTTTGCCCC
Statistics
Matches: 95, Mismatches: 10, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
70 1 0.01
71 9 0.09
72 45 0.47
73 35 0.37
74 4 0.04
75 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (73 bp):
GTAGAATTACCGAAATACCCCTGTAAGGCAAAATTACCGAAATAGCCCTTTAGGGTAGAAATACC
CCTGTAGG
Found at i:46772543 original size:19 final size:19
Alignment explanation
Indices: 46772519--46772564 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
46772509 TAGAATTACC
* *
46772519 GAAATACGCTTGTAGGGTA
1 GAAATACCCCTGTAGGGTA
46772538 GAAATACCCCTGTAGGGTA
1 GAAATACCCCTGTAGGGTA
*
46772557 GAATTACC
1 GAAATACC
46772565 GAGATACCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (19 bp):
GAAATACCCCTGTAGGGTA
Found at i:46772547 original size:46 final size:46
Alignment explanation
Indices: 46772492--46772587 Score: 133
Period size: 46 Copynumber: 2.1 Consensus size: 46
46772482 TAGAATTATC
*
46772492 GAAATACCCCT-TAAGGATAGAATTACCGAAATACGCTTGTAGGGTA
1 GAAATACCCCTGT-AGGATAGAATTACCGAAATACCCTTGTAGGGTA
* * *
46772538 GAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTA
1 GAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTA
46772584 -AAAT
1 GAAAT
46772588 TACCATTTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
45 4 0.09
46 40 0.89
47 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (46 bp):
GAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTA
Found at i:46773286 original size:27 final size:26
Alignment explanation
Indices: 46773242--46773292 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
46773232 CTCGCTGCAA
*
46773242 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
46773269 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
46773293 TGCAGCCTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:46774364 original size:27 final size:27
Alignment explanation
Indices: 46774337--46774548 Score: 207
Period size: 27 Copynumber: 7.9 Consensus size: 27
46774327 GGCAAATCAA
* * *
46774337 TCATTTTACCTTACAGGGGTATTACAA
1 TCATTTTACCCTATAGGGGTATTACAG
* * *
46774364 TCATTTTACCCTACAAGGGTATTATAG
1 TCATTTTACCCTATAGGGGTATTACAG
*
46774391 TCA-TTTACCCTATAGGGGTATTATAG
1 TCATTTTACCCTATAGGGGTATTACAG
* * *
46774417 TCATTTTACCTTATAGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTACAG
***
46774444 TCATTTTACCCTATAGGGGTATTTTGG
1 TCATTTTACCCTATAGGGGTATTACAG
* * *
46774471 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTACAG
*
46774498 TCATTTTATCCTATGAGGGTGT-TT-C-G
1 TCATTTTACCCTAT-AGGG-GTATTACAG
46774524 ATCATTTTACCCTATAGGGGGTATT
1 -TCATTTTACCCTATA-GGGGTATT
46774549 TCGATCATTT
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
26 28 0.17
27 127 0.78
28 5 0.03
29 2 0.01
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTATTACAG
Found at i:46774428 original size:80 final size:81
Alignment explanation
Indices: 46774337--46774493 Score: 226
Period size: 80 Copynumber: 2.0 Consensus size: 81
46774327 GGCAAATCAA
46774337 TCATTTTACCTTACAGGGGTATTACAATCATTTTACCCTACAAGGGTATTATAGTCA-TTTACCC
1 TCATTTTACCTTACAGGGGTATTACAATCATTTTACCCTACAAGGGTATTATAGTCATTTTACCC
46774401 TATAGGGGTATTATAG
66 TATAGGGGTATTATAG
* * ** * * * *
46774417 TCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTATAGGGGTATTTTGGTCATTTTACCC
1 TCATTTTACCTTACAGGGGTATTACAATCATTTTACCCTACAAGGGTATTATAGTCATTTTACCC
*
46774482 TATGGGGGTATT
66 TATAGGGGTATT
46774494 TCGGTCATTT
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 49 0.73
81 18 0.27
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (81 bp):
TCATTTTACCTTACAGGGGTATTACAATCATTTTACCCTACAAGGGTATTATAGTCATTTTACCC
TATAGGGGTATTATAG
Found at i:46774474 original size:54 final size:54
Alignment explanation
Indices: 46774337--46774560 Score: 240
Period size: 54 Copynumber: 4.1 Consensus size: 54
46774327 GGCAAATCAA
* * * * *
46774337 TCATTTTACCTTACAGGGGTATTACAATCATTTTACCCTACAAGGGTATTAT-AG
1 TCATTTTACCCTATAGGGGTATTACAATCATTTTACCCTATAGGGGTATT-TCGG
* * *
46774391 TCA-TTTACCCTATAGGGGTATTATAGTCATTTTACCTTATAGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTACAATCATTTTACCCTATAGGGGTATTTCGG
**** *
46774444 TCATTTTACCCTATAGGGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTACAATCATTTTACCCTATAGGGGTATTTCGG
* * *
46774498 TCATTTTATCCTATGAGGGTGT-TT-CGATCATTTTACCCTATAGGGGGTATTTCGA
1 TCATTTTACCCTAT-AGGG-GTATTACAATCATTTTACCCTATA-GGGGTATTTCGG
46774553 TCATTTTA
1 TCATTTTA
46774561 GACCACAAAT
Statistics
Matches: 148, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
52 1 0.01
53 43 0.29
54 77 0.52
55 25 0.17
56 2 0.01
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.42
Consensus pattern (54 bp):
TCATTTTACCCTATAGGGGTATTACAATCATTTTACCCTATAGGGGTATTTCGG
Found at i:46774523 original size:81 final size:81
Alignment explanation
Indices: 46774337--46774560 Score: 267
Period size: 81 Copynumber: 2.8 Consensus size: 81
46774327 GGCAAATCAA
* * * * * * *
46774337 TCATTTTACCTTACAGGGGTATTACAATCATTTTACCCTACAAGGGTATTATAGTCA-TTTACCC
1 TCATTTTACCTTATAGGGGTATTTCGATCATTTTACCCTATAGGGGTATTTTGGTCATTTTACCC
46774401 TATAGGGGTATTATAG
66 TATAGGGGTATTATAG
*
46774417 TCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTATAGGGGTATTTTGGTCATTTTACCC
1 TCATTTTACCTTATAGGGGTATTTCGATCATTTTACCCTATAGGGGTATTTTGGTCATTTTACCC
* *
46774482 TATGGGGGTATT-TCGG
66 TATAGGGGTATTAT-AG
* * *
46774498 TCATTTTATCC-TAT-GAGGGTGTTTCGATCATTTTACCCTATAGGGGGTATTTCGATCATTTTA
1 TCATTTTA-CCTTATAG-GGGTATTTCGATCATTTTACCCTATA-GGGGTATTTTGGTCATTTTA
46774561 GACCACAAAT
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
80 51 0.41
81 54 0.43
82 20 0.16
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.42
Consensus pattern (81 bp):
TCATTTTACCTTATAGGGGTATTTCGATCATTTTACCCTATAGGGGTATTTTGGTCATTTTACCC
TATAGGGGTATTATAG
Found at i:46774990 original size:7 final size:7
Alignment explanation
Indices: 46774980--46775072 Score: 59
Period size: 7 Copynumber: 12.9 Consensus size: 7
46774970 TGATATAAAA
46774980 TATATAT
1 TATATAT
46774987 TATATAT
1 TATATAT
46774994 TATATTAACT
1 TATA-T-A-T
46775004 TCATAT-T
1 T-ATATAT
46775011 TA-AGTAT
1 TATA-TAT
46775018 TAATATAT
1 T-ATATAT
*
46775026 AATATAT
1 TATATAT
*
46775033 AATATA-
1 TATATAT
46775039 T-TATAT
1 TATATAT
46775045 TATTATAT
1 TA-TATAT
46775053 TATATAT
1 TATATAT
* *
46775060 AATATAA
1 TATATAT
46775067 TATATA
1 TATATA
46775073 AAACATAAAG
Statistics
Matches: 70, Mismatches: 5, Indels: 22
0.72 0.05 0.23
Matches are distributed among these distances:
5 5 0.07
6 3 0.04
7 42 0.60
8 12 0.17
9 2 0.03
10 3 0.04
11 3 0.04
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (7 bp):
TATATAT
Found at i:46775045 original size:27 final size:27
Alignment explanation
Indices: 46775015--46775071 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
46775005 CATATTTAAG
*
46775015 TATTAATATATAATATATAATATATTA
1 TATTAATATATAATATATAATATAATA
* *
46775042 TATTATTATATTATATATAATATAATA
1 TATTAATATATAATATATAATATAATA
46775069 TAT
1 TAT
46775072 AAAACATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (27 bp):
TATTAATATATAATATATAATATAATA
Found at i:46775073 original size:7 final size:7
Alignment explanation
Indices: 46775018--46775073 Score: 64
Period size: 7 Copynumber: 8.4 Consensus size: 7
46775008 ATTTAAGTAT
46775018 TAATATA
1 TAATATA
46775025 TAATATA
1 TAATATA
46775032 TAATATA
1 TAATATA
*
46775039 TTATAT-
1 TAATATA
*
46775045 TATTATA
1 TAATATA
*
46775052 TTATATA
1 TAATATA
46775059 T-A-ATA
1 TAATATA
46775064 TAATATA
1 TAATATA
46775071 TAA
1 TAA
46775074 AACATAAAGT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
5 4 0.10
6 6 0.15
7 31 0.76
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
TAATATA
Found at i:46776282 original size:22 final size:22
Alignment explanation
Indices: 46776242--46776309 Score: 93
Period size: 22 Copynumber: 3.0 Consensus size: 22
46776232 CATTCTATTA
*
46776242 TTAGCACGTTAAGTGCTCTCTGT
1 TTAGCAC-TTTAGTGCTCTCTGT
46776265 TTAGCACATTT-GTGCTCTCTGT
1 TTAGCAC-TTTAGTGCTCTCTGT
*
46776287 ATAGCACTTTAGTGCTCTCTGT
1 TTAGCACTTTAGTGCTCTCTGT
46776309 T
1 T
46776310 CGTTTGTGCA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
21 3 0.08
22 28 0.70
23 9 0.22
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.43
Consensus pattern (22 bp):
TTAGCACTTTAGTGCTCTCTGT
Found at i:46783233 original size:43 final size:43
Alignment explanation
Indices: 46783126--46783241 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 43
46783116 CATTAGGATT
* * *
46783126 ATCGAGATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCATATCTGGGACAGTGGC
** * * * *
46783169 ATCTTTATATGATTTCGTGTAAGACCCTATCTGGGACAGTGGC
1 ATCGATATGTGATTACATGTAAGACCATATCTGGGACAGTGGC
*
46783212 ATCGATATGTGATAACATGTAAGACCATAT
1 ATCGATATGTGATTACATGTAAGACCATAT
46783242 TAGGGATATG
Statistics
Matches: 57, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.31
Consensus pattern (43 bp):
ATCGATATGTGATTACATGTAAGACCATATCTGGGACAGTGGC
Found at i:46785458 original size:10 final size:10
Alignment explanation
Indices: 46785443--46785468 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
46785433 TTTTAGGTTG
46785443 TTAAATGGAA
1 TTAAATGGAA
46785453 TTAAATGGAA
1 TTAAATGGAA
46785463 TTAAAT
1 TTAAAT
46785469 TCCTATTGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (10 bp):
TTAAATGGAA
Found at i:46795965 original size:18 final size:18
Alignment explanation
Indices: 46795942--46795978 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
46795932 ATCCTGGGAT
46795942 ATCAAAAAAAGAATTAAG
1 ATCAAAAAAAGAATTAAG
46795960 ATCAAAAAAAGAATTAAG
1 ATCAAAAAAAGAATTAAG
46795978 A
1 A
46795979 ACACATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.68, C:0.05, G:0.11, T:0.16
Consensus pattern (18 bp):
ATCAAAAAAAGAATTAAG
Found at i:46796562 original size:23 final size:23
Alignment explanation
Indices: 46796532--46796586 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
46796522 TAAGTATAAA
46796532 ACATGAAATTAAAGCATTATGAG
1 ACATGAAATTAAAGCATTATGAG
46796555 ACATGAAATTAAAGCATTATGAG
1 ACATGAAATTAAAGCATTATGAG
*
46796578 -CATCAAATT
1 ACATGAAATT
46796587 CACCAATTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 8 0.26
23 23 0.74
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.27
Consensus pattern (23 bp):
ACATGAAATTAAAGCATTATGAG
Found at i:46796888 original size:19 final size:19
Alignment explanation
Indices: 46796864--46796904 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
46796854 CCGAATGGAT
46796864 ATATTTTTAGCTATAATAG
1 ATATTTTTAGCTATAATAG
46796883 ATATTTTTAGCTATAATAG
1 ATATTTTTAGCTATAATAG
46796902 ATA
1 ATA
46796905 CTCACTTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (19 bp):
ATATTTTTAGCTATAATAG
Found at i:46808211 original size:103 final size:103
Alignment explanation
Indices: 46808029--46808214 Score: 282
Period size: 103 Copynumber: 1.8 Consensus size: 103
46808019 TATTACACAG
* * * * * * *
46808029 CCTAGCACATGGCTTAGCACGCAACCTGACACATGGGCGTGTGGCTTGGACGTGTGACCCAAGTT
1 CCTAGAACATAGCCTAGCACACAACCTGACACACGGGCGTGTGGCTTGGACGTGTAACCCAAGTC
46808094 AGTGAGTTACACGGGCACCGACATGGGCTGGGACATCA
66 AGTGAGTTACACGGGCACCGACATGGGCTGGGACATCA
* *
46808132 CCTAGAACATAGCCTAGCACACAACCTGGCACACGGGCGTGTGGCTTGGCCGTGTAACCCAAGTC
1 CCTAGAACATAGCCTAGCACACAACCTGACACACGGGCGTGTGGCTTGGACGTGTAACCCAAGTC
*
46808197 AGTGAGTTATACGGGCAC
66 AGTGAGTTACACGGGCAC
46808215 GGAATTTTCT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
103 73 1.00
ACGTcount: A:0.24, C:0.27, G:0.30, T:0.19
Consensus pattern (103 bp):
CCTAGAACATAGCCTAGCACACAACCTGACACACGGGCGTGTGGCTTGGACGTGTAACCCAAGTC
AGTGAGTTACACGGGCACCGACATGGGCTGGGACATCA
Found at i:46813679 original size:28 final size:28
Alignment explanation
Indices: 46813642--46813704 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
46813632 TAGCACCCAG
46813642 AGAAAAACAACAAAATTAAGAATCAAGA
1 AGAAAAACAACAAAATTAAGAATCAAGA
*
46813670 AGAAAAACAACAAAATTAAGAATCAAGG
1 AGAAAAACAACAAAATTAAGAATCAAGA
46813698 AGAAAAA
1 AGAAAAA
46813705 TTAATGGCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.68, C:0.10, G:0.13, T:0.10
Consensus pattern (28 bp):
AGAAAAACAACAAAATTAAGAATCAAGA
Found at i:46824145 original size:40 final size:39
Alignment explanation
Indices: 46824071--46824284 Score: 229
Period size: 40 Copynumber: 5.4 Consensus size: 39
46824061 AACCCAAGTA
* * *
46824071 CCTTTGGGATTTAGCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTC-ACTAGCACAAATG
*
46824110 CCTTCGGGTCTTAGCTCGGATATAGTCACTAGCACAACA-G
1 CCTTCGGGACTTAGC-CGGATATAGTCACTAGCACAA-ATG
* *
46824150 CCTTCGGGACTTAGCCCGAATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTC-ACTAGCACAAATG
* * * *
46824190 CCTTCGGGACTTATCCTGGATATAGTCAATAGCACAACTA
1 CCTTCGGGACTTAGCC-GGATATAGTCACTAGCACAAATG
* *
46824230 CCTTCGGGACTTAGCCCGGATATGGTCACTAGCAC-CATG
1 CCTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATG
46824269 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
46824285 CAGATAACAT
Statistics
Matches: 147, Mismatches: 19, Indels: 19
0.79 0.10 0.10
Matches are distributed among these distances:
38 2 0.01
39 31 0.21
40 108 0.73
41 6 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATG
Found at i:46824223 original size:80 final size:80
Alignment explanation
Indices: 46824069--46824281 Score: 283
Period size: 80 Copynumber: 2.7 Consensus size: 80
46824059 CAAACCCAAG
* * * *
46824069 TACCTTTGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCTCGGATAT
1 TACCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTACCTCGGATAT
*
46824133 AGTCACTAGCACAAC
66 AGTCAATAGCACAAC
*
46824148 -AGCCTTCGGGACTTAGCCCGAATATAGCAACTCGCACAAATGCCTTCGGGACTTATCCT-GGAT
1 TA-CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTA-CCTCGGAT
46824211 ATAGTCAATAGCACAAC
64 ATAGTCAATAGCACAAC
* * *
46824228 TACCTTCGGGACTTAGCCCGGATATGGTC-ACTAGCAC-CATGCCTTCGGGACTTA
1 TACCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTA
46824282 GCCCAGATAA
Statistics
Matches: 119, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 28 0.24
80 86 0.72
81 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TACCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTACCTCGGATAT
AGTCAATAGCACAAC
Found at i:46830485 original size:39 final size:40
Alignment explanation
Indices: 46830408--46830554 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
46830398 TAGCTCCTCG
* * *
46830408 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
46830448 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
46830487 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
46830527 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
46830555 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:46830565 original size:80 final size:80
Alignment explanation
Indices: 46830454--46830634 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
46830444 CTCATTCAAT
* * *
46830454 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
46830517 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
46830533 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
46830597 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
46830614 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
46830635 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:46830594 original size:40 final size:40
Alignment explanation
Indices: 46830451--46830634 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
46830441 TAACTCATTC
* *
46830451 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
46830491 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
46830531 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
46830571 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
46830612 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46830635 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:46905136 original size:47 final size:47
Alignment explanation
Indices: 46905075--46905485 Score: 405
Period size: 47 Copynumber: 8.4 Consensus size: 47
46905065 CAGCCAAGAC
46905075 AGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAA
* * *
46905122 ATTGTATATATGTGAAAAGGCCTAATAGCCA-ATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAAT-GGCAGATGTGATGAATGTGAA
* *** * *
46905169 AGTGTATATGTGTGATAATGTATATAGTTGATAAGGTCTA-ATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAA-G-GCCTA----AT--GG-C-AGAT-G-TGATG-AA----TGTGAA
* * *
46905232 AGTGTATATATGTGATAAGGCTTATTGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAA
* *
46905279 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAA
* *
46905326 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAA
*
46905373 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAA
* * * * * *
46905420 AGTGTATATATGTGACAGGGCCGAGTGGCCA-ACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGG-CAGATGTGATGAATGTGAA
* *
46905467 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
46905486 TCCCGAAGGG
Statistics
Matches: 308, Mismatches: 37, Indels: 38
0.80 0.10 0.10
Matches are distributed among these distances:
47 249 0.81
48 5 0.02
49 2 0.01
51 1 0.00
52 4 0.01
53 3 0.01
54 5 0.02
55 3 0.01
56 3 0.01
57 2 0.01
58 4 0.01
59 1 0.00
61 2 0.01
62 1 0.00
63 23 0.07
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAA
Found at i:46905220 original size:63 final size:64
Alignment explanation
Indices: 46905115--46905249 Score: 195
Period size: 63 Copynumber: 2.1 Consensus size: 64
46905105 GATGTGATGA
46905115 ATGTGA-AATTGTATATATGTGAAAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAATTGTATATATGTGAAAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
* * * * *
46905178 GTGTGATAA-TGTATATA-GTTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAATTGTATATATG-TGAAAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
46905241 ATGTGATAA
1 ATGTGATAA
46905250 GGCTTATTGG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
62 1 0.02
63 61 0.95
64 2 0.03
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (64 bp):
ATGTGATAATTGTATATATGTGAAAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
Found at i:46905270 original size:110 final size:110
Alignment explanation
Indices: 46905077--46905296 Score: 343
Period size: 110 Copynumber: 2.0 Consensus size: 110
46905067 GCCAAGACAG
*
46905077 TGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAATTGTATATATGTGAAAAGG
1 TGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTATATATGTGAAAAGG
*
46905142 CCTAATAGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAA
66 CCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * *
46905187 TGTATATA-GTTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 TGTATATATG-TGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTATATATGTGAAAAG
* * * *
46905251 GCTTATTGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
65 GCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
46905297 GGCCTAATAG
Statistics
Matches: 100, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
109 1 0.01
110 99 0.99
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (110 bp):
TGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTATATATGTGAAAAGG
CCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:46905386 original size:157 final size:157
Alignment explanation
Indices: 46905075--46905485 Score: 458
Period size: 141 Copynumber: 2.7 Consensus size: 157
46905065 CAGCCAAGAC
*
46905075 AGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAATTGTATATATGTGAAAA
1 AGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTATATATGTGAAAA
* * * ** *
46905140 GGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAATGTATATAGTTGATAAGG
66 GGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTAATAAGGTATATAGCCGATAAGA
* **
46905205 TCTAATGGCCGATGTGATGAATGTGAA
131 TCGAATGGAAGATGTGATGAATGTGAA
* * * *
46905232 AGTGTATATATGTGATAAGGCTTATTGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTATATATGTGAAAA
*
46905297 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA-G------GCC-------
66 GGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTAATAAGGTATATAGCCGATAAGA
**
46905348 T--AATGGCCGATGTGATGAATGTGAA
131 TCGAATGGAAGATGTGATGAATGTGAA
* * *
46905373 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 AGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTATATATGTGAAAA
* * * * * * * *
46905438 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 GGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTAATAAG
46905486 TCCCGAAGGG
Statistics
Matches: 230, Mismatches: 23, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
141 123 0.53
143 1 0.00
150 1 0.00
156 1 0.00
157 104 0.45
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (157 bp):
AGTGTATATATGTGATAAGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTATATATGTGAAAA
GGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTAATAAGGTATATAGCCGATAAGA
TCGAATGGAAGATGTGATGAATGTGAA
Found at i:46907554 original size:43 final size:43
Alignment explanation
Indices: 46907506--46907608 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
46907496 TTGGTTTTCA
46907506 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
46907549 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
46907592 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
46907609 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:46907625 original size:29 final size:29
Alignment explanation
Indices: 46907590--46907663 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
46907580 GTTGTGAGAT
* *
46907590 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
46907619 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
46907648 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
46907664 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:46908150 original size:40 final size:40
Alignment explanation
Indices: 46908053--46908191 Score: 217
Period size: 40 Copynumber: 3.5 Consensus size: 40
46908043 GAGTTACTAA
*
46908053 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
46908093 AT-CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
46908132 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
46908172 ATCCGTGCTAAATCCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
46908192 CAATCATGCT
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 38 0.42
40 53 0.58
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:46908188 original size:119 final size:119
Alignment explanation
Indices: 46907976--46908191 Score: 276
Period size: 119 Copynumber: 1.8 Consensus size: 119
46907966 GAATGATGTC
** *
46907976 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTGGT
1 CGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTCGT
* *
46908041 GCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTAT
66 GCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGCGATGTAT
** * *
46908095 CGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCATT
1 CGGGCTAAGTCCCGAAG-GC-TTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCATT
* * *
46908158 CGTGCTAGTGA-TATATCCGTGCTAAATCCCGAAG
63 CGTGCGAGTGACTAAATCCGGGCTAAATCCCGAAG
46908192 CAATCATGCT
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
119 56 0.68
120 20 0.24
121 6 0.07
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (119 bp):
CGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTCGT
GCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGCGATGTAT
Found at i:46908213 original size:119 final size:120
Alignment explanation
Indices: 46907976--46908219 Score: 266
Period size: 119 Copynumber: 2.0 Consensus size: 120
46907966 GAATGATGTC
** *
46907976 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTGGT
1 CGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTCGT
* * *
46908041 GCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA-T
66 GCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTATT
** * *
46908095 CGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCATT
1 CGGGCTAAGTCCCGAAG-GC-TTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCATT
* * * * *
46908158 CGTGCTAGTGA-TATATCCGTGCTAAATCCCG-A-AGCAATCATGCTGGTGACGTGTATT
63 CGTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGA--TGTATT
46908215 CGGGC
1 CGGGC
46908220 CTTCGTGCCT
Statistics
Matches: 104, Mismatches: 15, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
117 14 0.13
118 1 0.01
119 57 0.55
120 26 0.25
121 6 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (120 bp):
CGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTCGT
GCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTATT
Found at i:46911964 original size:47 final size:47
Alignment explanation
Indices: 46911898--46912372 Score: 799
Period size: 47 Copynumber: 10.1 Consensus size: 47
46911888 GAAATGATAG
46911898 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46911945 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
46911994 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
46912041 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
46912088 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
46912135 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
46912182 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT-A
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46912228 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46912275 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
46912322 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46912369 TAAG
1 TAAG
46912373 TCCCGAAGGG
Statistics
Matches: 410, Mismatches: 15, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
46 45 0.11
47 318 0.78
49 47 0.11
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:46912315 original size:234 final size:236
Alignment explanation
Indices: 46911898--46912372 Score: 801
Period size: 234 Copynumber: 2.0 Consensus size: 236
46911888 GAAATGATAG
* *
46911898 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
46911963 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
46912028 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
130 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGG
* * * * *
46912093 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
195 CCGAATAGCCAACGTGATGAATGTGAAAGTGCATAAATGTGA
46912135 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
46912200 GTGATGAATGTGAAAGTG-TATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
66 GTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
46912263 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGC
131 GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGC
* * *
46912328 CGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
196 CGAATAGCCAACGTGATGAATGTGAAAGTGCATAAATGTGA
46912369 TAAG
1 TAAG
46912373 TCCCGAAGGG
Statistics
Matches: 224, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
234 134 0.60
235 9 0.04
237 81 0.36
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (236 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGC
CGAATAGCCAACGTGATGAATGTGAAAGTGCATAAATGTGA
Found at i:46912547 original size:37 final size:37
Alignment explanation
Indices: 46912491--46912569 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
46912481 CCGAGCTCTA
* *
46912491 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
46912528 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
46912565 AAGAC
1 AAGAC
46912570 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46920975 original size:56 final size:55
Alignment explanation
Indices: 46920915--46921105 Score: 262
Period size: 56 Copynumber: 3.4 Consensus size: 55
46920905 TCCCAGACAG
* *
46920915 GGTCTTACTCGTACACATATATTAGAGTCACATATCGATGCCAACGTATAAAATGT
1 GGTCTTACTCG-ACACATATATTCGAGTCACATATCGATGCCAACGTATAAAACGT
46920971 GGTCTTACTCG-CACATATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGACACATATAT-TCG-AGTCACATATCGATGCCAACGTATAAAACGT
* *
46921027 GGTCTTACTCGAACACATATA-TCGATATCACATATCAATGCCAACGTATAAAACGT
1 GGTCTTACTCG-ACACATATATTCGA-GTCACATATCGATGCCAACGTATAAAACGT
46921083 GGTCTTACTC-ACATACATATATT
1 GGTCTTACTCGAC--ACATATATT
46921106 GACACCATGG
Statistics
Matches: 123, Mismatches: 4, Indels: 15
0.87 0.03 0.11
Matches are distributed among these distances:
54 11 0.09
55 3 0.02
56 100 0.81
57 1 0.01
58 8 0.07
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (55 bp):
GGTCTTACTCGACACATATATTCGAGTCACATATCGATGCCAACGTATAAAACGT
Found at i:46921742 original size:15 final size:15
Alignment explanation
Indices: 46921719--46921749 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
46921709 TCAAAAATTC
46921719 CAATACAAAACATAT
1 CAATACAAAACATAT
*
46921734 CAATCCAAAACATAT
1 CAATACAAAACATAT
46921749 C
1 C
46921750 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:46933791 original size:40 final size:40
Alignment explanation
Indices: 46933717--46933896 Score: 292
Period size: 40 Copynumber: 4.5 Consensus size: 40
46933707 AACCCAAGTA
* *
46933717 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
46933756 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
46933796 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
46933836 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
46933876 CCTTTGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
46933897 GTCATCCGAA
Statistics
Matches: 133, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 13 0.10
40 119 0.89
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:46941511 original size:40 final size:40
Alignment explanation
Indices: 46941434--46941652 Score: 309
Period size: 40 Copynumber: 5.5 Consensus size: 40
46941424 AACCCAAGTA
* * *
46941434 CCTTCGGGATTTAG-CAGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
46941473 CCTTCGGGACTTAGCGCGGATATAGTCACTAGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * * *
46941513 CCTTCGGGACATAGCCCGGATATAGTCAATAGTAGAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
46941553 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
46941593 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
46941632 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
46941653 GTCATCCGAA
Statistics
Matches: 160, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 36 0.22
40 123 0.77
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:46968849 original size:27 final size:26
Alignment explanation
Indices: 46968819--46968872 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
46968809 CTAGACCTCT
*
46968819 TAGTTGATAAAATGGCTATTATGACCC
1 TAGTTGATAAAATGACTATTATG-CCC
46968846 TAGTTGATAAAATGACTATTATGCCC
1 TAGTTGATAAAATGACTATTATGCCC
46968872 T
1 T
46968873 TATGAGAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (26 bp):
TAGTTGATAAAATGACTATTATGCCC
Found at i:46976713 original size:27 final size:27
Alignment explanation
Indices: 46976677--46976733 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
46976667 CCTAGACCCT
*
46976677 CTAGTTGATAAAATGGCTATTATGCCC
1 CTAGTTGATAAAATGACTATTATGCCC
*
46976704 CTAGTTGATAAAATGACTGTTATGCCC
1 CTAGTTGATAAAATGACTATTATGCCC
46976731 CTA
1 CTA
46976734 TGAGAAGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (27 bp):
CTAGTTGATAAAATGACTATTATGCCC
Found at i:46978207 original size:46 final size:46
Alignment explanation
Indices: 46978135--46978338 Score: 227
Period size: 46 Copynumber: 4.4 Consensus size: 46
46978125 TTTTGGGCAT
*
46978135 CCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
46978181 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
46978227 CCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
* * *
46978272 ATCCGAACTCGTTAAGTTGAGTCTGAGTTCACTTATGGATGCAAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
46978320 CCGAGCTCGTTGAGTTGAG
1 CCGAACTCGTTGAGTTGAG
46978339 CCTCAGTTCG
Statistics
Matches: 130, Mismatches: 19, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
42 3 0.02
43 3 0.02
45 3 0.02
46 86 0.66
47 25 0.19
48 4 0.03
50 3 0.02
51 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:46980149 original size:27 final size:27
Alignment explanation
Indices: 46980111--46980162 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
46980101 TATTTTGGGT
* *
46980111 ATTTTTATTGTAATAAGGCCTTTATGG
1 ATTTTTACTGTAATAAGGCATTTATGG
46980138 ATTTTTACTGTAATAAGGCATTTAT
1 ATTTTTACTGTAATAAGGCATTTAT
46980163 TTTGGGTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.29, C:0.08, G:0.15, T:0.48
Consensus pattern (27 bp):
ATTTTTACTGTAATAAGGCATTTATGG
Found at i:46981411 original size:8 final size:8
Alignment explanation
Indices: 46981400--46981434 Score: 70
Period size: 8 Copynumber: 4.4 Consensus size: 8
46981390 TGGTTAAGTA
46981400 GAGTGTTG
1 GAGTGTTG
46981408 GAGTGTTG
1 GAGTGTTG
46981416 GAGTGTTG
1 GAGTGTTG
46981424 GAGTGTTG
1 GAGTGTTG
46981432 GAG
1 GAG
46981435 GTCCTGTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.14, C:0.00, G:0.51, T:0.34
Consensus pattern (8 bp):
GAGTGTTG
Found at i:46987641 original size:22 final size:21
Alignment explanation
Indices: 46987609--46987649 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
46987599 TTATTATTAA
*
46987609 ATTATATTTAATAATAATACT
1 ATTATATTTAATAACAATACT
46987630 ATTATAATTTAATAACAATA
1 ATTAT-ATTTAATAACAATA
46987650 ACAATAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTATATTTAATAACAATACT
Found at i:46991949 original size:20 final size:20
Alignment explanation
Indices: 46991903--46991949 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
46991893 TATTTAAATA
*
46991903 TATATTATGTAGAATTATAT
1 TATATTATGTAAAATTATAT
* *
46991923 TAAATTATTTAAATATTAT-T
1 TATATTATGTAAA-ATTATAT
46991943 TATATTA
1 TATATTA
46991950 AATTATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (20 bp):
TATATTATGTAAAATTATAT
Found at i:46991956 original size:14 final size:14
Alignment explanation
Indices: 46991917--46991957 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
46991907 TTATGTAGAA
46991917 TTATATTAAATTAT
1 TTATATTAAATTAT
*
46991931 TTA-A--ATATTAT
1 TTATATTAAATTAT
46991942 TTATATTAAATTAT
1 TTATATTAAATTAT
46991956 TT
1 TT
46991958 TTAATTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 6
0.73 0.07 0.20
Matches are distributed among these distances:
11 9 0.41
12 1 0.05
13 1 0.05
14 11 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATATTAAATTAT
Found at i:46993329 original size:12 final size:13
Alignment explanation
Indices: 46993314--46993359 Score: 53
Period size: 12 Copynumber: 3.7 Consensus size: 13
46993304 AATAGGGGTG
46993314 ATAATAATA-ATA
1 ATAATAATACATA
46993326 ATAATAATACA-A
1 ATAATAATACATA
*
46993338 ACAATAATACAT-
1 ATAATAATACATA
46993350 ATATATAATA
1 ATA-ATAATA
46993360 ATAGTAGTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 22 0.76
13 7 0.24
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (13 bp):
ATAATAATACATA
Found at i:46993866 original size:22 final size:22
Alignment explanation
Indices: 46993839--46993959 Score: 88
Period size: 22 Copynumber: 5.6 Consensus size: 22
46993829 GAAAAAACAA
* *
46993839 AAAAAACAAAAAAACTTCTTCC
1 AAAAAACAAAAAAACTACCTCC
46993861 AGAAAAACAAAAAAAC-ACCTCC
1 A-AAAAACAAAAAAACTACCTCC
*
46993883 -AAAAAGAAAAAAACT-CCTCC
1 AAAAAACAAAAAAACTACCTCC
* * **
46993903 AACAAAAGAACAATCCT-CCTCC
1 AA-AAAACAAAAAAACTACCTCC
* * * *
46993925 AAAAAACCAAAAATCCACCCCC
1 AAAAAACAAAAAAACTACCTCC
*
46993947 TAAAAACAAAAAA
1 AAAAAACAAAAAA
46993960 TTGGGTTTGG
Statistics
Matches: 79, Mismatches: 15, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
20 18 0.23
21 9 0.11
22 38 0.48
23 14 0.18
ACGTcount: A:0.60, C:0.28, G:0.02, T:0.10
Consensus pattern (22 bp):
AAAAAACAAAAAAACTACCTCC
Found at i:46993886 original size:20 final size:20
Alignment explanation
Indices: 46993840--46993904 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 20
46993830 AAAAAACAAA
*
46993840 AAAAACAAAAAAACTTCTTCC
1 AAAAACAAAAAAAC-TCCTCC
*
46993861 AGAAAAACAAAAAAACACCTCC
1 --AAAAACAAAAAAACTCCTCC
*
46993883 AAAAAGAAAAAAACTCCTCC
1 AAAAACAAAAAAACTCCTCC
46993903 AA
1 AA
46993905 CAAAAGAACA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 20 0.53
22 4 0.11
23 14 0.37
ACGTcount: A:0.62, C:0.25, G:0.03, T:0.11
Consensus pattern (20 bp):
AAAAACAAAAAAACTCCTCC
Found at i:46994365 original size:44 final size:43
Alignment explanation
Indices: 46994245--46994622 Score: 194
Period size: 44 Copynumber: 8.7 Consensus size: 43
46994235 TCAGATTTGC
46994245 TATCTTCGATC-CGTTCCCTATAAGCACAGGGATGCCAAAT-CTG-
1 TATCTTCGATCTC-TTCCCTATAAGCACAGGGATGCC--ATGCTGA
* * * *
46994288 T-TGTTC-AACT-TGTTCCTATAAGCACAGGGATGTCATGCTGA
1 TATCTTCGATCTCT-TCCCTATAAGCACAGGGATGCCATGCTGA
* * * * * *
46994329 AATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCA-GATCTGC
1 TATCTTCGATCT-CTTCCCTATAAGCACAGGGATGCCATG--CTGA
*
46994374 TATCTTCGATC-CGTTCCCTATAAGCACAGGGATGCCAAAT-CTGT
1 TATCTTCGATCTC-TTCCCTATAAGCACAGGGATGCC--ATGCTGA
* * * *
46994418 TGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGA
1 TATCTTCGATC-TCTTCCCTATAAGCACAGGGATGCC--ATGCTGA
* * * *
46994462 TGT-TTC-AACTTGTTCCCTATAAGAACAGGGATGCCATGCTGA
1 TATCTTCGATC-TCTTCCCTATAAGCACAGGGATGCCATGCTGA
* * * * * * *
46994504 AATCTTTGATCTGCTTCACT-TAAAGCATAGGAATGTCA-GATCTGC
1 TATCTTCGATCT-CTTCCCTAT-AAGCACAGGGATGCCATG--CTGA
46994549 TATCTTCGATC-CGTTCCCTATAAGCACAGGGATGCCATGCTGA
1 TATCTTCGATCTC-TTCCCTATAAGCACAGGGATGCCATGCTGA
* * * *
46994592 AATCTTGGATCTGCTTCACTGTAAGCACAGG
1 TATCTTCGATCT-CTTCCCTATAAGCACAGG
46994623 AATGTCAGAT
Statistics
Matches: 261, Mismatches: 46, Indels: 55
0.72 0.13 0.15
Matches are distributed among these distances:
39 2 0.01
40 4 0.02
41 24 0.09
42 13 0.05
43 57 0.22
44 131 0.50
45 29 0.11
46 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (43 bp):
TATCTTCGATCTCTTCCCTATAAGCACAGGGATGCCATGCTGA
Found at i:46994407 original size:88 final size:88
Alignment explanation
Indices: 46994302--46994644 Score: 419
Period size: 88 Copynumber: 3.9 Consensus size: 88
46994292 TCAACTTGTT
* *
46994302 CCTATAAGCACAGGGATGTCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCA
1 CCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA
46994367 GATCTGCTATCTTCGATCCGTTC
66 GATCTGCTATCTTCGATCCGTTC
*** * * * * *
46994390 CCTATAAGCACAGGGATGCCAAAT-CTGTTGTTTTC-AACTTG-TTCCCTATAAGCACAGGGATG
1 CCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGATC-TGCTTCACTGTAAGCACAGGAATG
* * * * * *
46994452 CCAAATCTGATGT-TTC-AACTTGTTC
63 TCAGATCTGCTATCTTCGATC-CGTTC
* * *
46994477 CCTATAAGAACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCACT-TAAAGCATAGGAATGTC
1 CCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGT-AAGCACAGGAATGTC
46994541 AGATCTGCTATCTTCGATCCGTTC
65 AGATCTGCTATCTTCGATCCGTTC
*
46994565 CCTATAAGCACAGGGATGCCATGCTGAAATCTTGGATCTGCTTCACTGTAAGCACAGGAATGTCA
1 CCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA
46994630 GATCTGCTATCTTCG
66 GATCTGCTATCTTCG
46994645 GTCTGCTCCT
Statistics
Matches: 209, Mismatches: 35, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
85 2 0.01
86 11 0.05
87 53 0.25
88 130 0.62
89 11 0.05
90 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (88 bp):
CCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA
GATCTGCTATCTTCGATCCGTTC
Found at i:46994482 original size:43 final size:43
Alignment explanation
Indices: 46994257--46994497 Score: 231
Period size: 44 Copynumber: 5.6 Consensus size: 43
46994247 TCTTCGATCC
*
46994257 GTTCCCTATAAGCACAGGGATGCCAAATCTGTTG-TTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTCAACTT
* ** * *
46994299 GTT-CCTATAAGCACAGGGATGTC--ATGCTGAAATCTTCGATCTA
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGT-TTC-AACTT
* * * * * * * * * *
46994342 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCC
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGT-TTCAACT-T
*
46994386 GTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATG-TTTCAACTT
46994430 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTCAACTT
*
46994473 GTTCCCTATAAGAACAGGGATGCCA
1 GTTCCCTATAAGCACAGGGATGCCA
46994498 TGCTGAAATC
Statistics
Matches: 162, Mismatches: 27, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
39 2 0.01
40 3 0.02
41 19 0.12
42 6 0.04
43 39 0.24
44 80 0.49
45 11 0.07
46 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (43 bp):
GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTCAACTT
Found at i:46994538 original size:175 final size:173
Alignment explanation
Indices: 46994257--46994585 Score: 570
Period size: 175 Copynumber: 1.9 Consensus size: 173
46994247 TCTTCGATCC
* * *
46994257 GTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTCAACTTGTTCCTATAAGCACAGGGATGTC
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTCAACTTGTTCCTATAAGAACAGGGATGCC
46994322 ATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCG
66 ATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCG
46994387 TTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
131 TTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
46994430 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTCAACTTGTTCCCTATAAGAACAGGGATG
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATG-TTCAACTTGTT-CCTATAAGAACAGGGATG
* * *
46994495 CCATGCTGAAATCTTTGATCTGCTTCACT-TAAAGCATAGGAATGTCAGATCTGCTATCTTCGAT
64 CCATGCTGAAATCTTCGATCTACTTCACTGT-AAGCACAGGAATGTCAGATCTGCTATCTTCGAT
46994559 CCGTTCCCTATAAGCACAGGGATGCCA
128 CCGTTCCCTATAAGCACAGGGATGCCA
46994586 TGCTGAAATC
Statistics
Matches: 147, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
173 33 0.22
174 12 0.08
175 102 0.69
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (173 bp):
GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTCAACTTGTTCCTATAAGAACAGGGATGCC
ATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCG
TTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
Found at i:46994619 original size:175 final size:172
Alignment explanation
Indices: 46994257--46994622 Score: 513
Period size: 175 Copynumber: 2.1 Consensus size: 172
46994247 TCTTCGATCC
* * * *
46994257 GTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTCAACTTGTTCCTATAAGCACAGGGATGTC
1 GTTCACTATAAGCACAGGGATGCCAAATCTGATGTTCAACTTGTTCCTATAAGAACAGGGATGCC
46994322 ATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCG
66 ATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCG
*** *
46994387 TTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
131 TTCCCTATAAGCACAGGGATGCC-AATCTGAAATTTGCAACTT
*
46994430 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTCAACTTGTTCCCTATAAGAACAGGGATG
1 GTTCACTATAAGCACAGGGATGCCAAATCTGATG-TTCAACTTGTT-CCTATAAGAACAGGGATG
* * *
46994495 CCATGCTGAAATCTTTGATCTGCTTCACT-TAAAGCATAGGAATGTCAGATCTGCTATCTTCGAT
64 CCATGCTGAAATCTTCGATCTACTTCACTGT-AAGCACAGGAATGTCAGATCTGCTATCTTCGAT
* *
46994559 CCGTTCCCTATAAGCACAGGGATGCC-ATGCTGAAATCTTGGATC-T
128 CCGTTCCCTATAAGCACAGGGATGCCAAT-CTGAAAT-TTGCAACTT
*
46994604 GCTTCACTGTAAGCACAGG
1 G-TTCACTATAAGCACAGG
46994623 AATGTCAGAT
Statistics
Matches: 173, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
173 35 0.20
174 18 0.10
175 120 0.69
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (172 bp):
GTTCACTATAAGCACAGGGATGCCAAATCTGATGTTCAACTTGTTCCTATAAGAACAGGGATGCC
ATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCG
TTCCCTATAAGCACAGGGATGCCAATCTGAAATTTGCAACTT
Done.