Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 149 of 250
Found at i:48318310 original size:17 final size:15
Alignment explanation
Indices: 48318270--48318315 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
48318260 ATATAAATAG
*
48318270 AAATAAAAATATAAT
1 AAATAGAAATATAAT
48318285 AAATAGAAATATAAT
1 AAATAGAAATATAAT
48318300 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
48318316 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:48318325 original size:14 final size:14
Alignment explanation
Indices: 48318308--48318341 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
48318298 ATAATAGTAG
48318308 AAATATAAA-TAGAT
1 AAATA-AAATTAGAT
48318322 AAATAAAATTAGAT
1 AAATAAAATTAGAT
48318336 AAATAA
1 AAATAA
48318342 TAATAGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 3 0.16
14 16 0.84
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (14 bp):
AAATAAAATTAGAT
Found at i:48318344 original size:29 final size:30
Alignment explanation
Indices: 48318280--48318344 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 30
48318270 AAATAAAAAT
48318280 ATAATAAATAGAAATATAATAATAGTAGAA
1 ATAATAAATAGAAATATAATAATAGTAGAA
*
48318310 AT-ATAAATAGATAA-ATAA-AATTAG-ATAA
1 ATAATAAATAGA-AATATAATAA-TAGTAGAA
48318338 ATAATAA
1 ATAATAA
48318345 TAGTATTAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
28 7 0.23
29 20 0.65
30 4 0.13
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.28
Consensus pattern (30 bp):
ATAATAAATAGAAATATAATAATAGTAGAA
Found at i:48318384 original size:18 final size:18
Alignment explanation
Indices: 48318354--48318401 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
48318344 ATAGTATTAG
*
48318354 AATAGCAAAATAAATATA
1 AATAGCAAAATAAAAATA
48318372 AATAG-AAACATAAAAAT-
1 AATAGCAAA-ATAAAAATA
48318389 AATAGCAATAATA
1 AATAGCAA-AATA
48318402 TATTAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 8 0.31
18 17 0.65
19 1 0.04
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.21
Consensus pattern (18 bp):
AATAGCAAAATAAAAATA
Found at i:48318931 original size:5 final size:5
Alignment explanation
Indices: 48318923--48318949 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
48318913 CTAATTTAAT
48318923 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
48318950 ATAATATCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:48319576 original size:87 final size:87
Alignment explanation
Indices: 48319384--48319739 Score: 368
Period size: 88 Copynumber: 4.1 Consensus size: 87
48319374 TAATCTTCAG
* * * * * *
48319384 TCTGCTCCACTACTGCTTAGGAAGATAACATTTGCAATTTTCAGCCTGTTTCTCC-ACTGCTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTAC-CCTACTACTT-A
* **
48319448 GGGGATAAGGCTTACCATCTTCGA
64 GGGGGTAAGGCTTACTGTCTTCGA
* * *
48319472 TCTGCTACACTACTGCTTAGGGAGATAATATCTGTAATTTTTAGCCTGTTACCCTACTACTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGG
*
48319537 GGGTAAGGCTTATTGTCTTCGA
66 GGGTAAGGCTTACTGTCTTCGA
* * * * *
48319559 TCTGCTCCACTAATGCTTAGGGAGATAAGATCTTTAATCTTT-AGCATGTTACCCTACTGCTCAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTTCAGCCTGTTACCCTACTACTTAG
* *
48319623 GGAGTTAAGGCTCT-CTGTTTTCGA
65 GG-GGTAAGGCT-TACTGTCTTCGA
* * *
48319647 TCTGCTCCACTACTGTTTAGGG-G---GGATCTGT-ATTTTCCAGCCTATTACCCTACTACTTAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT-CAGCCTGTTACCCTACTACTTAG
*
48319707 GGGGTTAAGGCTTGCTGTCTTCGA
65 GGGG-TAAGGCTTACTGTCTTCGA
*
48319731 TCTTCTCCA
1 TCTGCTCCA
48319740 TAACCGATAC
Statistics
Matches: 227, Mismatches: 33, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
82 3 0.01
83 4 0.02
84 50 0.22
87 79 0.35
88 90 0.40
89 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.35
Consensus pattern (87 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGG
GGGTAAGGCTTACTGTCTTCGA
Found at i:48319960 original size:45 final size:45
Alignment explanation
Indices: 48319730--48320230 Score: 290
Period size: 45 Copynumber: 11.2 Consensus size: 45
48319720 GCTGTCTTCG
* * * * * *
48319730 ATCTTCTCCATAACCGATACATGGAGATAGGACTCACCATTTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCA
** *
48319775 ATCTGCTCCATAGTAGATACATGGAGATAAGA-TCTGTAATTCTT-A
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATT-TTCA
* * ** * * *
48319820 GTTTGCTCCATAATCGATACATGGAGATAAGATTTGCAACTTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCA
* * * * * * ***** **
48319865 ACCTACTCTC-TTG-CTACTTCA-GAGAGATAAGGCT-GGTGGCTAAA
1 ATCTGCTC-CATAGCCGA-TACATG-GAGATAAGACTCGCAATTTTCA
*
48319909 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCA
* ** *
48319954 ATCTGCTCCATAACCGATACATGGAGATAAGA-TCTATAATTCTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTTCA
* * *
48319999 ATCTACTCCATAGCCGATACATGGAGATAAGAC-CTACAACTTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTTCA
** * * * * ***** **
48320044 ATCTGCTCTTTTG-CTACTTCA-GAGAGATAAGGCT-GGTGGCTAAA
1 ATCTGCTCCATAGCCGA-TACATG-GAGATAAGACTCGCAATTTTCA
* * *
48320088 ATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCA
* *
48320133 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TCCGTAATTCTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACT-CGCAATTTTCA
* *
48320178 GTCTGCTTCATAGCCGATACATGGAGATAAGAC-CTGCAATTTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCAATTTTCA
*
48320223 ACCTGCTC
1 ATCTGCTC
48320231 TCTTACTACT
Statistics
Matches: 336, Mismatches: 98, Indels: 44
0.70 0.21 0.09
Matches are distributed among these distances:
43 1 0.00
44 62 0.18
45 269 0.80
46 4 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCA
Found at i:48320029 original size:90 final size:90
Alignment explanation
Indices: 48319730--48320230 Score: 348
Period size: 90 Copynumber: 5.6 Consensus size: 90
48319720 GCTGTCTTCG
* * * * ***
48319730 ATCTTCTCCATAACCGATACATGGAGATAGGA-CT-CACCATTTTCGATCTGCTCCATAGTAGAT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCA--ATTTTCAATCTGCTCCATAACCGAT
*
48319793 ACATGGAGATAAGATCTGTAATTCTTA
64 ACATGGAGATAAGATCTGTAATTCTCA
* * ** ** * * * ** *
48319820 GTTTGCTCCATAATCGATACATGGAGATAAGATTTGCAACTTTCAACCTACTCTC-T-TGCTACT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTCAATCTGCTC-CATAACCGA-T
* * ** *
48319883 TCA-GAGAGATAAG-GCTGGT--GGCTAAA
64 ACATG-GAGATAAGATCT-GTAATTCT-CA
*
48319909 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CTCGCCATTTTCAATCTGCTCCATAACCGATA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCT-GCAATTTTCAATCTGCTCCATAACCGATA
*
48319973 CATGGAGATAAGATCTATAATTCTCA
65 CATGGAGATAAGATCTGTAATTCTCA
* * * * *** * *
48319999 ATCTACTCCATAGCCGATACATGGAGATAAGACCTACAACTTTCAATCTGCT-CTTTTGCTACTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTCAATCTGCTCCATAACCGA-TA
* ** *
48320063 CA-GAGAGATAAG-GCTGGT--GGCTAAA
65 CATG-GAGATAAGATCT-GTAATTCT-CA
* * * *
48320088 ATCTGCTCCATAGCCGATAAATGGAGATAAGA-CTCGCCATTTTCGATCTGCTCCATAGCCGATA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCT-GCAATTTTCAATCTGCTCCATAACCGATA
*
48320152 CATGGAGATAAGATCCGTAATTCTCA
65 CATGGAGATAAGATCTGTAATTCTCA
* * *
48320178 GTCTGCTTCATAGCCGATACATGGAGATAAGACCTGCAATTTTCAACCTGCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTCAATCTGCTC
48320231 TCTTACTACT
Statistics
Matches: 310, Mismatches: 75, Indels: 52
0.71 0.17 0.12
Matches are distributed among these distances:
88 8 0.03
89 124 0.40
90 166 0.54
91 10 0.03
92 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (90 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTTTCAATCTGCTCCATAACCGATAC
ATGGAGATAAGATCTGTAATTCTCA
Found at i:48320041 original size:179 final size:179
Alignment explanation
Indices: 48319730--48320298 Score: 877
Period size: 179 Copynumber: 3.2 Consensus size: 179
48319720 GCTGTCTTCG
* * * * **
48319730 ATCTTCTCCATAACCGATACATGGAGATAGGACTCACCATTTTCGATCTGCTCCATAGTAGATAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
* * ** **
48319795 ATGGAGATAAGATCTGTAATTCTTAGTTTGCTCCATAATCGATACATGGAGATAAGATTTGCAAC
66 ATGGAGATAAGATCTGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAAC
*
48319860 TTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAA
131 TTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAA
* *
48319909 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCAATCTGCTCCATAACCGATAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
* * * *
48319974 ATGGAGATAAGATCTATAATTCTCAATCTACTCCATAGCCGATACATGGAGATAAGACCTACAAC
66 ATGGAGATAAGATCTGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAAC
* *
48320039 TTTCAATCTGCTCTTTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAA
131 TTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAA
*
48320088 ATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
* * *
48320153 ATGGAGATAAGATCCGTAATTCTCAGTCTGCTTCATAGCCGATACATGGAGATAAGACCTGCAAT
66 ATGGAGATAAGATCTGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAAC
* * *
48320218 TTTCAACCTGCTCTCTTACTACTTTAGAGAGATAAGGCTGATGGCTAAA
131 TTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAA
*
48320267 ATCTGTTCCATAGCCGATACATGGAGATAAGA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA
48320299 TCTGTAATTC
Statistics
Matches: 352, Mismatches: 38, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
179 352 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29
Consensus pattern (179 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
ATGGAGATAAGATCTGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAAC
TTTCAACCTGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAA
Found at i:48320427 original size:133 final size:133
Alignment explanation
Indices: 48320133--48320474 Score: 388
Period size: 133 Copynumber: 2.6 Consensus size: 133
48320123 GCCATTTTCG
48320133 ATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTTCATAGCCGATAC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTTCATAG-CGATAC
* * * *
48320198 ATGGAGATAAGACCTGCAATTTTCAACCTGCTCTCTTACTACTTTAGAGAGATAAGGCTGATGGC
65 ATGGAGATAAGACCTGCAATCTTCAACCTGCTCTCTTACTACCTCAAAGAGATAAGGCTGATGGC
48320263 TAAA
130 TAAA
* * * * *
48320267 ATCTGTTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTG-G-TACC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTTCATAGCGATACA
* * * * *
48320330 TCAGGAAGATAAGACTTG-TATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGTTGGTG
66 T--GG-AGATAAGACCTGCAATCTTCAACCTGCTCTCTTACTACCTCAAAGAGATAAGGCTGATG
*
48320394 GCTAGA
128 GCTAAA
* * * * * * *
48320400 ATCTACTCCATAGCCGATACATAGAGATAAGA-CTCGCTATTTTTTA-TCTGGTCCATAGCCGAT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATC-CG-TAATTCTCAGTCTGCTTCATAG-CGAT
48320463 ACATGGAGATAA
63 ACATGGAGATAA
48320475 AATCTATAAT
Statistics
Matches: 173, Mismatches: 27, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
131 4 0.02
132 2 0.01
133 89 0.51
134 73 0.42
135 1 0.01
136 4 0.02
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (133 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTTCATAGCGATACA
TGGAGATAAGACCTGCAATCTTCAACCTGCTCTCTTACTACCTCAAAGAGATAAGGCTGATGGCT
AAA
Found at i:48320464 original size:178 final size:177
Alignment explanation
Indices: 48320267--48321021 Score: 1064
Period size: 178 Copynumber: 4.3 Consensus size: 177
48320257 GATGGCTAAA
* * *
48320267 ATCTGTTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
* *
48320332 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGTTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
* * *
48320397 AGAATCTACTCCATAGCCGATACATAGAGATAAGACTCGCTATTTTTT
131 AAAATCTACTCCATAGCCGATACAT-GAGATAAGACTCGCCATTTTTG
* * * *
48320445 ATCTGGTCCATAGCCGATACATGGAGATAAAATCTATAATTTTCAGTCTGCTTCCCTGCTACCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
* * * *
48320510 AGAAAGATAAGACTTGTATCTTCAACCT--TCTCTTACTACCTCAGAGAGATAATGTTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
*
48320573 AAAATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCCATTTTTG
131 AAAATCTACTCCATAGCCGATACATG-AGATAAGACTCGCCATTTTTG
* * *
48320621 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTTTTAGTCTGCTTCCTTGCTACCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
* * * **
48320686 AGGAATATAAGACTTGTATCGTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTAATGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
48320751 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
131 AAAATCTACTCCATAGCCGATACAT-GAGATAAGACTCGCCATTTTTG
* * * * * * * * * *
48320799 ACCTGCTCTAAAGCCGATACATAGAGATAATATCTGTAATTTTTAGTTTACTTCCTTACTACCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
48320864 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
* * * * * *
48320929 AAAATCTGCTCCATAGCTGAAACATTGAGATAAGACTTGCAATTTTCG
131 AAAATCTACTCCATAGCCGATACA-TGAGATAAGACTCGCCATTTTTG
* * *
48320977 ATCTGCTCCATAGCTGATACATGGAGATAAGATCCGTAACTTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCA
48321022 ACCTACTCTC
Statistics
Matches: 515, Mismatches: 57, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
175 1 0.00
176 159 0.31
178 353 0.69
179 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (177 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
AAAATCTACTCCATAGCCGATACATGAGATAAGACTCGCCATTTTTG
Found at i:48320663 original size:45 final size:44
Alignment explanation
Indices: 48320576--48320672 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 44
48320566 GGTGGCTAAA
* *
48320576 ATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCCATTTTT
1 ATCTGCTCCATAGCCGATACATGAAGATAAGACTCACAATTTTT
* *
48320620 GATCTGCTCCATAGCCGATACATGGAGATAAGA-TCTATAATTTTT
1 -ATCTGCTCCATAGCCGATACATGAAGATAAGACTC-ACAATTTTT
48320665 AGTCTGCT
1 A-TCTGCT
48320673 TCCTTGCTAC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
44 3 0.07
45 43 0.93
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (44 bp):
ATCTGCTCCATAGCCGATACATGAAGATAAGACTCACAATTTTT
Found at i:48320698 original size:354 final size:355
Alignment explanation
Indices: 48320267--48321010 Score: 1096
Period size: 354 Copynumber: 2.1 Consensus size: 355
48320257 GATGGCTAAA
* * *
48320267 ATCTGTTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTCTCAGTCTGCTTCCTTGCTACCTC
* * * **
48320332 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGTTGGTGGCT
66 AGGAAGATAAGACTTGTATCGTCAACCTACTCTCTTGCTACCTCAAAGAGATAAGGCTAATGGCT
* * * * * *
48320397 AGAATCTACTCCATAGCCGATACATAGAGATAAGACTCGCTATTTTTTATCTGGTCCATAGCCGA
131 AAAATCTACTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTTGACCTGCTCCAAAGCCGA
* * *
48320462 TACATGGAGATAAAATCTATAATTTTCAGTCTGCTTCCCTGCTACCTCAGAAAGATAAGACTTGT
196 TACATAGAGATAAAATCTATAATTTTCAGTCTACTTCCCTACTACCTCAGAAAGATAAGACTTGT
* *
48320527 ATCTTCAACCT-TCTCTTACTACCTCAGAGAGATAATGTTGGTGGCTAAAATCTGCTCCATAGCC
261 ATCTTCAACCTCTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCC
* * *
48320591 GATACA-TGAAGATAAGACTCGCCATTTTTG
326 GAAACATTG-AGATAAGACTCGCAATTTTCG
* * *
48320621 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTTTTAGTCTGCTTCCTTGCTACCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTCTCAGTCTGCTTCCTTGCTACCTC
* *
48320686 AGGAATATAAGACTTGTATCGTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTAATGGCT
66 AGGAAGATAAGACTTGTATCGTCAACCTACTCTCTTGCTACCTCAAAGAGATAAGGCTAATGGCT
* *
48320751 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGACCTGCTCTAAAGCCGA
131 AAAATCTACTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTTGACCTGCTCCAAAGCCGA
* * * * * * *
48320816 TACATAGAGATAATATCTGTAATTTTTAGTTTACTTCCTTACTACCTGAGGAAGATAAGACTTGT
196 TACATAGAGATAAAATCTATAATTTTCAGTCTACTTCCCTACTACCTCAGAAAGATAAGACTTGT
*
48320881 ATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGC
261 ATCTTCAACCT-CTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGC
* *
48320946 TGAAACATTGAGATAAGACTTGCAATTTTCG
325 CGAAACATTGAGATAAGACTCGCAATTTTCG
*
48320977 ATCTGCTCCATAGCTGATACATGGAGATAAGATC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATC
48321011 CGTAACTTTC
Statistics
Matches: 347, Mismatches: 40, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
354 240 0.69
356 105 0.30
357 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (355 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTCTCAGTCTGCTTCCTTGCTACCTC
AGGAAGATAAGACTTGTATCGTCAACCTACTCTCTTGCTACCTCAAAGAGATAAGGCTAATGGCT
AAAATCTACTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTTGACCTGCTCCAAAGCCGA
TACATAGAGATAAAATCTATAATTTTCAGTCTACTTCCCTACTACCTCAGAAAGATAAGACTTGT
ATCTTCAACCTCTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCC
GAAACATTGAGATAAGACTCGCAATTTTCG
Found at i:48321037 original size:134 final size:134
Alignment explanation
Indices: 48320884--48321149 Score: 408
Period size: 134 Copynumber: 2.0 Consensus size: 134
48320874 GACTTGTATC
* * * *
48320884 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCTGA
1 TTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCACAGCCGA
* * *
48320949 -AACATTGAGATAAGACTTGCAATTTTCGATCTGCTCCATAGCTGATACATGGAGATAAGATCCG
66 TAA-ATAGAGATAAGACTTGCAATATTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCCG
48321013 TAACT
130 TAACT
* *
48321018 TTCAACCTACTCTCTTGCTACTTCAGAGAGATAATGCTAGTGGCTAAAATCTGCTCCACAGCCGA
1 TTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCACAGCCGA
** *
48321083 TAAATAGAGATAAGACTTGCCGTATTCGATTTGCTCCATAGCCGATACATGGAGATAAGATCCGT
66 TAAATAGAGATAAGACTTGCAATATTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCCGT
48321148 AA
131 AA
48321150 TTCTCAGTCT
Statistics
Matches: 119, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
134 117 0.98
135 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (134 bp):
TTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCACAGCCGA
TAAATAGAGATAAGACTTGCAATATTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCCGT
AACT
Found at i:48321163 original size:45 final size:44
Alignment explanation
Indices: 48321066--48321188 Score: 142
Period size: 45 Copynumber: 2.8 Consensus size: 44
48321056 AGTGGCTAAA
* * * *
48321066 ATCTGCTCCACAGCCGATAAATAGAGATAAGACTTGCCGTATTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGAC-TGCCGTATTCC
*
48321111 ATTTGCTCCATAGCCGATACATGGAGATAAGA-T-CCGTAATTCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTGCCGT-ATTC-C
*
48321155 AGTCTGCTCCATAGCCGATACATGGGGATAAGAC
1 A-TCTGCTCCATAGCCGATACATGGAGATAAGAC
48321189 CTGCAATTTT
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
42 4 0.06
43 5 0.07
44 1 0.01
45 57 0.85
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (44 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTGCCGTATTCC
Found at i:48321163 original size:179 final size:179
Alignment explanation
Indices: 48320935--48321276 Score: 474
Period size: 179 Copynumber: 1.9 Consensus size: 179
48320925 GGCTAAAATC
* * * * *
48320935 TGCTCCATAGCTGAAACATTGAGATAAGACTTGCAATTTTCGATCTGCTCCATAGCTGATACATG
1 TGCTCCATAGCCGAAACATGGAGATAAGACTCGCAATTCTCGATCTGCTCCATAGCCGATACATG
* * *
48321000 GAGATAAGATCC-GTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAATGCTAGTGGCTA
66 GAGATAAGA-CCTGCAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTAGCTA
48321064 AAATCTGCTCCACAGCCGATAAATAGAGATAAGACTTGCCGTATTCGATT
130 AAATCTGCTCCACAGCCGATAAATAGAGATAAGACTTGCCGTATTCGATT
* *
48321114 TGCTCCATAGCCGATACATGGAGATAAGA-TCCGTAATTCTC-AGTCTGCTCCATAGCCGATACA
1 TGCTCCATAGCCGAAACATGGAGATAAGACT-CGCAATTCTCGA-TCTGCTCCATAGCCGATACA
* * * * *
48321177 TGGGGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTAGCT
64 TGGAGATAAGACCTGCAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTAGCT
* * *
48321242 AAAATCTGCTCCATAGCCGATACATGGAGATAAGA
129 AAAATCTGCTCCACAGCCGATAAATAGAGATAAGA
48321277 TCTGTAATTC
Statistics
Matches: 142, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
178 4 0.03
179 138 0.97
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (179 bp):
TGCTCCATAGCCGAAACATGGAGATAAGACTCGCAATTCTCGATCTGCTCCATAGCCGATACATG
GAGATAAGACCTGCAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTAGCTAA
AATCTGCTCCACAGCCGATAAATAGAGATAAGACTTGCCGTATTCGATT
Found at i:48321207 original size:45 final size:45
Alignment explanation
Indices: 48321114--48321208 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
48321104 GTATTCGATT
* **
48321114 TGCTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTC
1 TGCTCCATAGCCGATACATGGAGATAAGATCCGCAATTCTCAACC
* *
48321159 TGCTCCATAGCCGATACATGGGGATAAGA-CCTGCAATTTTCAACC
1 TGCTCCATAGCCGATACATGGAGATAAGATCC-GCAATTCTCAACC
48321204 TGCTC
1 TGCTC
48321209 TCTTGCTACT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 2 0.05
45 42 0.95
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (45 bp):
TGCTCCATAGCCGATACATGGAGATAAGATCCGCAATTCTCAACC
Found at i:48321318 original size:89 final size:89
Alignment explanation
Indices: 48320977--48321320 Score: 215
Period size: 89 Copynumber: 3.9 Consensus size: 89
48320967 GCAATTTTCG
* * *
48320977 ATCTGCTCCATAGCTGATACATGGAGATAAGATCC-GTAACTT-TCAACCTACTCTCTTGCTACT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CCTGCAA-TTCTCAACCTGCTCTCTTGCTAC-
* * *
48321040 TC-AGAGAGATAATGCTAGTGGCTAAA
63 TCAAGAGAGATAAGGCTGGTAGCTAAA
* * * * ** * ** * *
48321066 ATCTGCTCCACAGCCGATAAATAGAGATAAGACTTGCCGTAT-TCGATTTGCTC-CATAGCCGA-
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAAT-TCTCAACCTGCTCTC-TTG-CTAC
* * * * *
48321128 TACATG-GAGATAA-GATCCGTAATTCT-CA
63 T-CAAGAGAGATAAGGCT-GGT-A-GCTAAA
* * * **
48321156 GTCTGCTCCATAGCCGATACATGGGGATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTCTCAACCTGCTCTCTTGCTACTCA
48321221 AGAGAGATAAGGCTGGTAGCTAAA
66 AGAGAGATAAGGCTGGTAGCTAAA
* * ** *
48321245 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCT-TCCTTGGTACCT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTCTCAACCTGCTCT-CTTGCTA-CT
48321309 CAAGA-AGATAAG
64 CAAGAGAGATAAG
48321321 ACTTATTTCT
Statistics
Matches: 188, Mismatches: 50, Indels: 34
0.69 0.18 0.12
Matches are distributed among these distances:
88 9 0.05
89 113 0.60
90 61 0.32
91 5 0.03
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (89 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCAATTCTCAACCTGCTCTCTTGCTACTCA
AGAGAGATAAGGCTGGTAGCTAAA
Found at i:48321392 original size:133 final size:133
Alignment explanation
Indices: 48321116--48321488 Score: 391
Period size: 133 Copynumber: 2.8 Consensus size: 133
48321106 ATTCGATTTG
* **
48321116 CTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCCGATACATGGG
1 CTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCC-ATACAAGAA
* * *
48321181 GATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTAGCTAAAA
65 GATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTAGCTAAAA
*
48321246 TCTG
130 TCTA
* * *
48321250 CTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACC-T-CAAG
1 CTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGC-TCCATAG--CCATACAAG
* * *
48321313 AAGATAAGA-CT-TATTTCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTA
63 AAGATAAGACCTGCAATT-TTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTAGCTA
48321376 AAATCTA
127 AAATCTA
* * * * * *
48321383 CTCCATAGCCGATATATGGAGATAAGA-CTCGCTATTTTTTA-TCTACTCCATAGCCGATACATG
1 CTCCATAGCCGATACATGGAGATAAGATC-CG-TAATTCTCAGTCTGCTCCATAGCC-ATACAAG
* * * * **
48321446 GAGATAAAATCTGTAATTTTCAGTCTGCT-TCTCTGCTACCTCA
63 AAGATAAGACCTGCAATTTTCAACCTGCTCTCT-TGCTACCTCA
48321489 GGAAGATAAG
Statistics
Matches: 200, Mismatches: 27, Indels: 24
0.80 0.11 0.10
Matches are distributed among these distances:
130 2 0.01
132 10 0.05
133 94 0.47
134 82 0.41
135 10 0.05
137 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (133 bp):
CTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCCATACAAGAAG
ATAAGACCTGCAATTTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTAGCTAAAAT
CTA
Found at i:48321451 original size:178 final size:178
Alignment explanation
Indices: 48321245--48321989 Score: 1062
Period size: 178 Copynumber: 4.2 Consensus size: 178
48321235 GGTAGCTAAA
* *
48321245 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
* * *
48321310 AAGAAGATAAGACTTATTTCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCT
66 AAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
* * *
48321375 AAAATCTACTCCATAGCCGATATATGGAGATAAGACTCGCTATTTTTT
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
* *
48321423 ATCTACTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTCAGTCTGCTT-CTCTGCTACCT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCT-TGCTACCT
* * * *
48321487 CAGGAAGATAAGACTTGTATCTTCAACCTGCTCCCTTACTACCTCAGAGAGATAAGGTTGGTGGC
65 CAAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGC
* * *
48321552 TAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTTT
130 TAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
* * *
48321601 ATCTGCTCCATAGCCGATACATGGATATAAGATCTATAATTTTTAGTCTGCTTCCTTGCTACCT-
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
* *
48321665 AAGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGC
66 AA-GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGC
* *
48321730 TAAAATCTACTCTATAGTCGATACATGGAGATAAGACTCGCCATTTTTG
130 TAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
* * * * * * * *
48321779 ATTTGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTACCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
* * * *
48321844 AGGAAGAAAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGTT
66 AAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
* * ** * * *
48321909 AAAATCTGCTCCACAGATGAAACATGGAGATAGGACTCGCCATTTTCG
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
*
48321957 ATCTTCTCCATAGCCGATACATGGAGATAAGAT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGAT
48321990 AGTAACTTTC
Statistics
Matches: 505, Mismatches: 58, Indels: 8
0.88 0.10 0.01
Matches are distributed among these distances:
177 3 0.01
178 499 0.99
179 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (178 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTC
AAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
Found at i:48321643 original size:45 final size:44
Alignment explanation
Indices: 48321556--48321652 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 44
48321546 GGTGGCTAAA
* *
48321556 ATCTGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTTT
1 ATCTGCTCCATAGCCGATACATAGAGATAAGACTC-ACAATTTTT
* * *
48321601 ATCTGCTCCATAGCCGATACATGGATATAAGA-TCTATAATTTTT
1 ATCTGCTCCATAGCCGATACATAGAGATAAGACTC-ACAATTTTT
48321645 AGTCTGCT
1 A-TCTGCT
48321653 TCCTTGCTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 9 0.20
45 36 0.80
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (44 bp):
ATCTGCTCCATAGCCGATACATAGAGATAAGACTCACAATTTTT
Found at i:48322028 original size:133 final size:133
Alignment explanation
Indices: 48321864--48322122 Score: 367
Period size: 133 Copynumber: 1.9 Consensus size: 133
48321854 GACTTGTATC
* * * * * *
48321864 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGTTAAAATCTGCTCCACA-GATG
1 TTCAACCTGCTCTCTTACTACCTCAGAGAGATAAAGCTGGTAGCTAAAATCTACTCCACATCAGG
* *
48321928 AAACATGGAGATAGGACTCGCCATTTTCGATCTTCTCCATAGCCGATACATGGAGATAAGATAGT
66 AAA-ATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATAGT
48321993 AACT
130 AACT
** * * * *
48321997 TTCAACCTGCTCTCTTACTATTTCAGAGAGATAAGGTTGGTAGCTAAAATCTACTCCATATCCGG
1 TTCAACCTGCTCTCTTACTACCTCAGAGAGATAAAGCTGGTAGCTAAAATCTACTCCACATCAGG
*
48322062 TAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGAT
66 AAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGAT
48322123 CCGTAATTCT
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
133 107 0.97
134 3 0.03
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (133 bp):
TTCAACCTGCTCTCTTACTACCTCAGAGAGATAAAGCTGGTAGCTAAAATCTACTCCACATCAGG
AAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATAGTA
ACT
Found at i:48322110 original size:356 final size:354
Alignment explanation
Indices: 48321245--48322164 Score: 883
Period size: 356 Copynumber: 2.6 Consensus size: 354
48321235 GGTAGCTAAA
* ** **
48321245 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAA-TTCTCAGTCTGCTTCCTTGGTACCT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CTATAACTT-TCAACCTGCTTCCTTACTACCT
* ** ** * ** * * * **
48321309 CAA-GAAGATAAGACTTATTTCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGG
64 -AAGGAAGATAAGACTTGTAGCTAAAACCTACTCTCTTGCTAAAT-AGAGAGATAAGACTAGCAG
* * * *
48321373 CTAAAATCTACTCCATAGCCGATATATGGAGATAAGACTCGCTATTTTTTATCTACTCCATAGCC
127 CTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCTATTTTTCATCTGCTCTATAGCC
* * *
48321438 GATACATGGAGATAAAATCTGTAATTTTCAGTCTGCTTCTCTGCTACCTCAGGAAGATAAGACTT
192 GATACATGGAGATAAAATCTGTAATTTTCAGTCTACTTCTCTACTACCTCAGGAAGAAAAGACTT
* * *
48321503 GTATCTTCAACCTGCTCCCTTACTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATA
257 GTATCTTCAACCTGCTCCCTTACTACCTCAGAGAGATAAAGCTGGTGGCTAAAATCTGCTCCACA
* * **
48321568 GCCGATACATAGAGATAAGACTCGCCATTTTTT
322 GACGAAACATAGAGATAAGACTCGCCATTTTCG
* * * ** *
48321601 ATCTGCTCCATAGCCGATACATGGATATAAGATCTATAATTTTTAGTCTGCTTCCTTGCTACCTA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CTATAACTTTCAACCTGCTTCCTTACTACCTA
* * ** * ** * **
48321666 AGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCT
65 AGGAAGATAAGACTTGTAGCTAAAACCTACTCTCTTGCTAAAT-AGAGAGATAAGACTAGCAGCT
* * * * *
48321731 AAAATCTACTCTATAGTCGATACATGGAGATAAGACTCGCCATTTTTGATTTGCTCTATAGCCGA
129 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCTATTTTTCATCTGCTCTATAGCCGA
* * * *
48321796 TACATAGAGATAATATCTGTAATTTTTAGTCTACTTC-CTTACTACCTGAGGAAGAAAAGACTTG
194 TACATGGAGATAAAATCTGTAATTTTCAGTCTACTTCTC-TACTACCTCAGGAAGAAAAGACTTG
* * *
48321860 TATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGTTAAAATCTGCTCCACAG
258 TATCTTCAACCTGCTCCCTTACTACCTCAGAGAGATAAAGCTGGTGGCTAAAATCTGCTCCACAG
* * *
48321925 ATGAAACATGGAGATAGGACTCGCCATTTTCG
323 ACGAAACATAGAGATAAGACTCGCCATTTTCG
* **
48321957 ATCTTCTCCATAGCCGATACATGGAGATAAGA-TAGTAACTTTCAACCTGC-TCTCTTACTATTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTA-TAACTTTCAACCTGCTTC-CTTACTACCT
* * * * *
48322020 CA-GAGAGATAAG-GTTGGTAGCTAAAATCTACTC-CATATCCGGTAAAT-G-GAGATAAGACTC
64 AAGGA-AGATAAGACTT-GTAGCTAAAACCTACTCTC-T-T--GCTAAATAGAGAGATAAGACTA
** *** * * *
48322080 GCCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGA-TC-CGTAATTCTCAGTCTGCTC
123 G-CAGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGC-TATTTTTCA-TCTGCTC
48322143 TATAGCCGATACATGGAGATAA
185 TATAGCCGATACATGGAGATAA
48322165 GACCTACAAT
Statistics
Matches: 475, Mismatches: 75, Indels: 28
0.82 0.13 0.05
Matches are distributed among these distances:
354 10 0.02
355 59 0.12
356 400 0.84
357 2 0.00
358 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (354 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTATAACTTTCAACCTGCTTCCTTACTACCTAA
GGAAGATAAGACTTGTAGCTAAAACCTACTCTCTTGCTAAATAGAGAGATAAGACTAGCAGCTAA
AATCTACTCCATAGCCGATACATGGAGATAAGACTCGCTATTTTTCATCTGCTCTATAGCCGATA
CATGGAGATAAAATCTGTAATTTTCAGTCTACTTCTCTACTACCTCAGGAAGAAAAGACTTGTAT
CTTCAACCTGCTCCCTTACTACCTCAGAGAGATAAAGCTGGTGGCTAAAATCTGCTCCACAGACG
AAACATAGAGATAAGACTCGCCATTTTCG
Found at i:48322114 original size:45 final size:45
Alignment explanation
Indices: 48322045--48322167 Score: 142
Period size: 45 Copynumber: 2.7 Consensus size: 45
48322035 GGTAGCTAAA
* * * * * *
48322045 ATCTACTCCATATCCGGTAAATGGAGATAAGACT-CGCCATTTTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCCGCAATTCTC
*
48322089 GATCTGCTCCATAGCCGATACATGGAGATAAGA-TCCGTAATTCTC
1 -ATCTGCTCCATAGCCGATACATGGAGATAAGACTCCGCAATTCTC
*
48322134 AGTCTGCTCTATAGCCGATACATGGAGATAAGAC
1 A-TCTGCTCCATAGCCGATACATGGAGATAAGAC
48322168 CTACAATTTT
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
44 2 0.03
45 65 0.97
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCCGCAATTCTC
Found at i:48322413 original size:178 final size:178
Alignment explanation
Indices: 48322224--48323011 Score: 1150
Period size: 178 Copynumber: 4.4 Consensus size: 178
48322214 GGTGGCTAAA
* * *
48322224 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTTGCTACCTC
* *
48322289 AAGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
*
48322354 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCTATTTTTT
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTT
* *
48322402 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTCAGTCTACTTCCCTGCTACCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTTGCTACCTC
* * * * *
48322467 AGGAAGATAAGACTTGTATCTTCAACTTGCTCTCTTACTACCTCAGAGACATAAGGTTGGTGGTT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
*
48322532 AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTT
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTT
* * * * *
48322580 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTTTTAGTATGCTTCCTTGCTACCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTTGCTACCTC
* *
48322645 AGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
*
48322710 AAAATCTACTCTATAGCCGATACATGGAGATAAGACTCGCCATTTTTT
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTT
* * * * * * *
48322758 ATCCGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTACCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTTGCTACCTC
* * *
48322823 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGTTACTTCAGAGAGATAAGACTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
* * * * **
48322888 AAAATCTGCTCCATAGCCGAAACATGGAGATAAGACTCACAATTTTCG
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTT
* ** *
48322936 ATCTGCTCCATAGCCGATACATGGAGATAAGATACT-TAACTTTCAACCTAC-TCTCTTGCTACT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGAT-CTGTAATTTTCAGTCTACTTC-CTTGCTACC
48322999 TCA-GAGAGATAAG
64 TCAGGA-AGATAAG
48323012 GCTAGTGGCT
Statistics
Matches: 546, Mismatches: 61, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
177 4 0.01
178 540 0.99
179 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (178 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTTGCTACCTC
AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTT
Found at i:48322430 original size:133 final size:134
Alignment explanation
Indices: 48322090--48322431 Score: 419
Period size: 133 Copynumber: 2.6 Consensus size: 134
48322080 GCCATTTTCG
*
48322090 ATCTGCTCCATAGCCGATACATGGAGATAAGATC-CGTAATTCTCAGTCTGCTCTATAGCCGATA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCGC-TAATTCTCAGTCTGCTCCATAGCCGATA
* * * * * *
48322154 CATGGAGATAAGACCTACAATTTTCAACTTGCTCTCTTGCTACTTTAGATAGATAAGGCTGGTGG
65 CATGGAGATAAGACCTACAATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGG
48322219 CTAAA
130 CTAAA
* *
48322224 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTG-TAATTCTCAGTCTGCTTCCTTGGTACC-
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATC-GCTAATTCTCAGTCTGC-TCCATAG--CCG
* * ***
48322287 -T-CAAGAAGATAAGA-CTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGG
62 ATACATGGAGATAAGACCTACAATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGG
48322349 TGGCTAAA
127 TGGCTAAA
* * * *
48322357 ATCTACTCCATAGCCGATACATGGAGATAAGACTCGCTATTTTTTA-TCTGCTCCATAGCCGATA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TCGCTAATTCTCAGTCTGCTCCATAGCCGATA
48322421 CATGGAGATAA
65 CATGGAGATAA
48322432 AATCTGTAAT
Statistics
Matches: 176, Mismatches: 22, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
130 2 0.01
132 6 0.03
133 93 0.53
134 68 0.39
135 5 0.03
137 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (134 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCGCTAATTCTCAGTCTGCTCCATAGCCGATAC
ATGGAGATAAGACCTACAATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGC
TAAA
Found at i:48322641 original size:445 final size:443
Alignment explanation
Indices: 48321782--48322622 Score: 980
Period size: 445 Copynumber: 1.9 Consensus size: 443
48321772 ATTTTTGATT
* * * * * *
48321782 TGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTACCTGAGG
1 TGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTCTCAGTCTACTTCCTTACTACCTCAAG
* *
48321847 AAGAAAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGTTAAA
66 AAGAAAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAAGCTGGTGGCTAAA
* * * *
48321912 ATCTGCTCCACAGATGAAACATGGAGATAGGACTCGCCATTTTCGATCTTCTCCATAGCCGATAC
131 ATCTACTCCACAGACGAAACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
* * * ** *
48321977 ATGGAGATAAGATAGTAACTTTCAACCTGCTCTCTTACTATTTCAGAGAGATAAGGTTGGTAGCT
196 ATGGAGATAAAATAGTAACTTTCAACCTACTCTCCTACTACCTCAGAGAGATAAGCTTGGTAGCT
* * ***
48322042 AAAATCTACTCCATATCCGGTAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGA
261 AAAATCTACTCCATATCC-GTAAA-GGACATAAGACTCGCCAGTTAAAATCTGCTCCATAGCCGA
* *
48322107 TACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCTATAGCCGATACATGGAGATAAGACCTAC
324 TACATGGAGATAAGATCCGCAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCTAC
48322172 AATTTTCAACTTGCTCTCTTGCTACTTTAGATAGATAAGGCTGGTGGCTAAAATC
389 AATTTTCAACTTGCTCTCTTGCTACTTTAGATAGATAAGGCTGGTGGCTAAAATC
* * **
48322227 TGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAAG
1 TGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTCTCAGTCTACTTCCTTACTACCTCAAG
* *
48322292 AAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAA
66 AAGAAAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAAGCTGGTGGCTAAA
* * * * **
48322357 ATCTACTCCATAGCCGATACATGGAGATAAGACTCGCTATTTTTTATCTGCTCCATAGCCGATAC
131 ATCTACTCCACAGACGAAACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
* * ** *
48322422 ATGGAGATAAAATCTGTAATTTTCAGTCTACT-TCCCTGCTACCTCAG-GAAGATAAGACTT-GT
196 ATGGAGATAAAAT-AGTAACTTTCAACCTACTCT-CCTACTACCTCAGAG-AGATAAG-CTTGGT
* ** * * * * * ***
48322484 ATCTTCAA-CTTGCTCTCTTACTACC-T-CAGAGACATAAG-GTTGGTGGTTAAAATCTGCTCCA
257 AGCTAAAATC-TACTC-CATA-T-CCGTAAAG-GACATAAGACTCGCCAGTTAAAATCTGCTCCA
* * *
48322545 TAGCCGATACATGGAGATAAGA-CTCGCCATTTTTTA-TCTGCTCCATAGCCGATACATGGAGAT
317 TAGCCGATACATGGAGATAAGATC-CG-CAATTCTCAGTCTGCTCCATAGCCGATACATGGAGAT
* *
48322608 AAGATCTATAATTTT
380 AAGACCTACAATTTT
48322623 TAGTATGCTT
Statistics
Matches: 327, Mismatches: 58, Indels: 22
0.80 0.14 0.05
Matches are distributed among these distances:
444 1 0.00
445 264 0.81
446 53 0.16
447 6 0.02
448 1 0.00
449 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (443 bp):
TGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTCTCAGTCTACTTCCTTACTACCTCAAG
AAGAAAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAAGCTGGTGGCTAAA
ATCTACTCCACAGACGAAACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCCGATAC
ATGGAGATAAAATAGTAACTTTCAACCTACTCTCCTACTACCTCAGAGAGATAAGCTTGGTAGCT
AAAATCTACTCCATATCCGTAAAGGACATAAGACTCGCCAGTTAAAATCTGCTCCATAGCCGATA
CATGGAGATAAGATCCGCAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCTACAA
TTTTCAACTTGCTCTCTTGCTACTTTAGATAGATAAGGCTGGTGGCTAAAATC
Found at i:48322999 original size:134 final size:134
Alignment explanation
Indices: 48322843--48323102 Score: 405
Period size: 134 Copynumber: 1.9 Consensus size: 134
48322833 GACTTGTATC
* * * *
48322843 TTCAACCTGCTCTCTTGTTACTTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGA
1 TTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGACTAGTGGCTAAAATATGCTCCATAGCCGA
*
48322908 -AACATGGAGATAAGACTCACAATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATACT
66 TAA-ATGGAGATAAGACTCACAATTTTCGATCTGATCCATAGCCGATACATGGAGATAAGATACT
48322972 TAACT
130 TAACT
* *
48322977 TTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTGGCTAAAATATGCTCTATAGCCGA
1 TTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGACTAGTGGCTAAAATATGCTCCATAGCCGA
* ** *
48323042 TAAATGGAGATAAGACTCGCCTTTTTTGATCTGATCCATAGCCGATACATGGAGATAAGAT
66 TAAATGGAGATAAGACTCACAATTTTCGATCTGATCCATAGCCGATACATGGAGATAAGAT
48323103 CCATAATTCT
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
134 112 0.98
135 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (134 bp):
TTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGACTAGTGGCTAAAATATGCTCCATAGCCGA
TAAATGGAGATAAGACTCACAATTTTCGATCTGATCCATAGCCGATACATGGAGATAAGATACTT
AACT
Found at i:48323086 original size:45 final size:45
Alignment explanation
Indices: 48323034--48323144 Score: 127
Period size: 45 Copynumber: 2.5 Consensus size: 45
48323024 AATATGCTCT
* * * *
48323034 ATAGCCGATAAATGGAGATAAGACTCGCCT-TTTTTGA-TCTGATCC
1 ATAGCCGATAAATGGAGATAAGA-TC-CATAATTCTCAGTCTGATCC
* *
48323079 ATAGCCGATACATGGAGATAAGATCCATAATTCTCAGTCTGCTCC
1 ATAGCCGATAAATGGAGATAAGATCCATAATTCTCAGTCTGATCC
*
48323124 ATAGCCGATATATGGAGATAA
1 ATAGCCGATAAATGGAGATAA
48323145 TACCTGTAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
43 2 0.04
44 6 0.11
45 49 0.86
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (45 bp):
ATAGCCGATAAATGGAGATAAGATCCATAATTCTCAGTCTGATCC
Found at i:48323128 original size:179 final size:179
Alignment explanation
Indices: 48322891--48323233 Score: 523
Period size: 179 Copynumber: 1.9 Consensus size: 179
48322881 GGTGGCTAAA
* *
48322891 ATCTGCTCCATAGCCGAAACATGGAGATAAGACTCACAATTTTCGATCTGCTCCATAGCCGATAC
1 ATCTGATCCATAGCCGAAACATGGAGATAAGACTCACAATTCTCGATCTGCTCCATAGCCGATAC
48322956 ATGGAGATAAGATA-CT-TAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTG
66 ATGGAGAT-A-ATACCTGTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTG
*
48323019 GCTAAAATATGCTCTATAGCCGATAAATGGAGATAAGACTCGCCTTTTTTG
129 GCTAAAATATGCTCCATAGCCGATAAATGGAGATAAGACTCGCCTTTTTTG
* *
48323070 ATCTGATCCATAGCCGATACATGGAGATAAGA-TCCATAATTCTC-AGTCTGCTCCATAGCCGAT
1 ATCTGATCCATAGCCGAAACATGGAGATAAGACT-CACAATTCTCGA-TCTGCTCCATAGCCGAT
* * * * *
48323133 ATATGGAGATAATACCTGTAATTTTCAACCTACTCTTTTGCTACTTTAGAGAGATAAGGCTGGTG
64 ACATGGAGATAATACCTGTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTG
*
48323198 GCTAAAATATGCTCCATAGCCGATACATGGAGATAA
129 GCTAAAATATGCTCCATAGCCGATAAATGGAGATAA
48323234 AATCTGTAAT
Statistics
Matches: 149, Mismatches: 11, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
177 3 0.02
178 5 0.03
179 141 0.95
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (179 bp):
ATCTGATCCATAGCCGAAACATGGAGATAAGACTCACAATTCTCGATCTGCTCCATAGCCGATAC
ATGGAGATAATACCTGTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTGGC
TAAAATATGCTCCATAGCCGATAAATGGAGATAAGACTCGCCTTTTTTG
Found at i:48323352 original size:133 final size:132
Alignment explanation
Indices: 48323070--48323499 Score: 553
Period size: 133 Copynumber: 3.2 Consensus size: 132
48323060 GCCTTTTTTG
* * ** *
48323070 ATCTGATCCATAGCCGATACATGGAGATAAGATCCATAATTCTCAGTCTGC-TCCATAGCCGATA
1 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTCTCAGTCTGCTTCC-TTG--G-TA
* * * * * * *
48323134 --TATGG-AGATAATACCTGTAATTTTCAACCTACTCTTTTGCTACTTTAGAGAGATAAGGCTGG
62 CCTA-GGAAGATAAGACTTGT-ATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGG
48323196 TGGCTAAA
125 TGGCTAAA
*
48323204 ATATGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTCTCAGTCTGCTTCCTTGGTACCT-
*
48323269 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCT
65 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
48323334 AAA
130 AAA
* * * * * **
48323337 ATCTACTCTATAGCCGATACATAGAGATAAAATCTGTAATTTTCAGTCTGCTTCCCTACTACCTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTCTCAGTCTGCTTCCTTGGTACC-T
* *
48323402 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCT
65 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
48323467 AAA
130 AAA
48323470 ATCTGCTCCATAGCCGATACATGGAGATAA
1 ATCTGCTCCATAGCCGATACATGGAGATAA
48323500 GACTTACCAT
Statistics
Matches: 262, Mismatches: 28, Indels: 13
0.86 0.09 0.04
Matches are distributed among these distances:
131 2 0.01
132 1 0.00
133 195 0.74
134 61 0.23
135 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (132 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTA
GGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTA
AA
Found at i:48323456 original size:979 final size:978
Alignment explanation
Indices: 48319953--48323366 Score: 5728
Period size: 979 Copynumber: 3.5 Consensus size: 978
48319943 CGCCATTTTC
* * * * * *
48319953 AATCTGCTCCATAACCGATACATGGAGATAAGA-TCTATAATTCTCAATCTACTCCATAGCCGAT
1 AATCTGCTCCATAGCCGAAACATGGAGATAAGACTC-ACAATTTTCGATCTGCTCCATAGCCGAT
* * * *
48320017 ACATGGAGATAAGACCTAC--AACTTTCAATCTGCTCTTTTGCTACTTCAGAGAGATAAGGCTGG
65 ACATGGAGATAAGA--TACGTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAG
48320080 TGGCTAAAATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATA
128 TGGCTAAAATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATA
*
48320145 GCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTTCATAGCCGATACATGGAGATAAGA
193 GCCGATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGA
* * *
48320210 CCTGCAATTTTCAACCTGCTCTCTTACTACTTTAGAGAGATAAGGCTGATGGCTAAAATCTGTTC
258 CCTGCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTC
*
48320275 CATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAGGAAGAT
323 CATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAAGAAGAT
* *
48320340 AAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGTTGGTGGCTAGAATCTA
388 AAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAATCTA
*
48320405 CTCCATAGCCGATACATAGAGATAAGACTCGCTATTTTTTATCTGGTCCATAGCCGATACATGGA
453 CTCCATAGCCGATACATAGAGATAAGACTCGCTATTTTTTATCTGCTCCATA-CC-ATACATGGA
* *
48320470 GATAAAATCTATAATTTTCAGTCTGCTTCCCTGCTACCTCAGAAAGATAAGACTTGTATCTTCAA
516 GATAAAATCTGTAATTTTCAGTCTGCTTCCCTGCTACCTCAGGAAGATAAGACTTGTATCTTCAA
*
48320535 CCT--TCTCTTACTACCTCAGAGAGATAATGTTGGTGGCTAAAATCTGCTCCATAGCCGATACAT
581 CCTGCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCCGATACAT
* *
48320598 GAAGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTT
646 GGAGATAAGACTCGCCATTTTTTATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTT
* *
48320663 TTAGTCTGCTTCCTTGCTACCTGAGGAATATAAGACTTGTATCGTCAACCTACTCTCTTGCTACC
711 TTAGTCTGCTTCCTTGCTACCTGAGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACC
* *
48320728 TCAGAGAGATAAGGCTAATGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCA
776 TCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCTATAGCCGATACATGGAGATAAGACTCGCCA
* *
48320793 TTTTTGA-CCTGCTCTAAAGCCGATACATAGAGATAATATCTGTAATTTTTAGTTTACTTCCTTA
841 TTTTTGATCC-GCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTA
*
48320857 CTACCTGAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT
905 CTACCTGAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGACT
48320922 GGTGGCTAA
970 GGTGGCTAA
* * ** *
48320931 AATCTGCTCCATAGCTGAAACATTGAGATAAGACTTGCAATTTTCGATCTGCTCCATAGCTGATA
1 AATCTGCTCCATAGCCGAAACATGGAGATAAGACTCACAATTTTCGATCTGCTCCATAGCCGATA
* *
48320996 CATGGAGATAAGATCCGTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAATGCTAGTGG
66 CATGGAGATAAGATACGTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTGG
* * * * * *
48321061 CTAAAATCTGCTCCACAGCCGATAAATAGAGATAAGACTTGCCGTATTCGATTTGCTCCATAGCC
131 CTAAAATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCC
*
48321126 GATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCCGATACATGGGGATAAGACCT
196 GATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCT
*
48321191 GCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTAGCTAAAATCTGCTCCAT
261 GCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCAT
48321256 AGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAAGAAGATAAG
326 AGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAAGAAGATAAG
* *
48321321 ACTTATTTCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAATCTACTC
391 ACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAATCTACTC
* * *
48321386 CATAGCCGATATATGGAGATAAGACTCGCTATTTTTTATCTACTCCATAGCCGATACATGGAGAT
456 CATAGCCGATACATAGAGATAAGACTCGCTATTTTTTATCTGCTCCATA-CC-ATACATGGAGAT
*
48321451 AAAATCTGTAATTTTCAGTCTGCTTCTCTGCTACCTCAGGAAGATAAGACTTGTATCTTCAACCT
519 AAAATCTGTAATTTTCAGTCTGCTTCCCTGCTACCTCAGGAAGATAAGACTTGTATCTTCAACCT
* *
48321516 GCTCCCTTACTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCCGATACATAGA
584 GCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGA
*
48321581 GATAAGACTCGCCATTTTTTATCTGCTCCATAGCCGATACATGGATATAAGATCTATAATTTTTA
649 GATAAGACTCGCCATTTTTTATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTTTTA
*
48321646 GTCTGCTTCCTTGCTACCTAAGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCA
714 GTCTGCTTCCTTGCTACCTGAGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCA
*
48321711 GAGAGATAAGGCTAGTGGCTAAAATCTACTCTATAGTCGATACATGGAGATAAGACTCGCCATTT
779 GAGAGATAAGGCTAGTGGCTAAAATCTACTCTATAGCCGATACATGGAGATAAGACTCGCCATTT
**
48321776 TTGATTTGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTAC
844 TTGATCCGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTAC
*
48321841 CTGAGGAAGAAAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAA-AGCTGGT
909 CTGAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGA-CTGGT
*
48321905 GGTTAA
973 GGCTAA
* ** * * * *
48321911 AATCTGCTCCACAGATGAAACATGGAGATAGGACTCGCCATTTTCGATCTTCTCCATAGCCGATA
1 AATCTGCTCCATAGCCGAAACATGGAGATAAGACTCACAATTTTCGATCTGCTCCATAGCCGATA
* * * * * *
48321976 CATGGAGATAAGATA-GTAACTTTCAACCTGCTCTCTTACTATTTCAGAGAGATAAGGTTGGTAG
66 CATGGAGATAAGATACGTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTGG
* * *
48322040 CTAAAATCTACTCCATATCCGGTAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCC
131 CTAAAATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCC
*
48322105 GATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCTATAGCCGATACATGGAGATAAGACCT
196 GATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCT
* * *
48322170 ACAATTTTCAACTTGCTCTCTTGCTACTTTAGATAGATAAGGCTGGTGGCTAAAATCTGCTCCAT
261 GCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCAT
48322235 AGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAAGAAGATAAG
326 AGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAAGAAGATAAG
48322300 ACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAATCTACTC
391 ACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAATCTACTC
*
48322365 CATAGCCGATACATGGAGATAAGACTCGCTATTTTTTATCTGCTCCATAGCCGATACATGGAGAT
456 CATAGCCGATACATAGAGATAAGACTCGCTATTTTTTATCTGCTCCATA-CC-ATACATGGAGAT
* *
48322430 AAAATCTGTAATTTTCAGTCTACTTCCCTGCTACCTCAGGAAGATAAGACTTGTATCTTCAACTT
519 AAAATCTGTAATTTTCAGTCTGCTTCCCTGCTACCTCAGGAAGATAAGACTTGTATCTTCAACCT
* *
48322495 GCTCTCTTACTACCTCAGAGACATAAGGTTGGTGGTTAAAATCTGCTCCATAGCCGATACATGGA
584 GCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGA
48322560 GATAAGACTCGCCATTTTTTATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTTTTA
649 GATAAGACTCGCCATTTTTTATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTTTTA
*
48322625 GTATGCTTCCTTGCTACCTGAGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCA
714 GTCTGCTTCCTTGCTACCTGAGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCA
48322690 GAGAGATAAGGCTAGTGGCTAAAATCTACTCTATAGCCGATACATGGAGATAAGACTCGCCATTT
779 GAGAGATAAGGCTAGTGGCTAAAATCTACTCTATAGCCGATACATGGAGATAAGACTCGCCATTT
*
48322755 TTTATCCGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTAC
844 TTGATCCGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTAC
* *
48322820 CTGAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGTTACTTCAGAGAGATAAGACTGGTG
909 CTGAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGACTGGTG
48322885 GCTAA
974 GCTAA
48322890 AATCTGCTCCATAGCCGAAACATGGAGATAAGACTCACAATTTTCGATCTGCTCCATAGCCGATA
1 AATCTGCTCCATAGCCGAAACATGGAGATAAGACTCACAATTTTCGATCTGCTCCATAGCCGATA
*
48322955 CATGGAGATAAGATACTTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTGG
66 CATGGAGATAAGATACGTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTGG
* * * * *
48323020 CTAAAATATGCTCTATAGCCGATAAATGGAGATAAGACTCGCCTTTTTTGATCTGATCCATAGCC
131 CTAAAATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCC
* * *
48323085 GATACATGGAGATAAGATCCATAATTCTCAGTCTGCTCCATAGCCGATATATGGAGATAATACCT
196 GATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCT
* * * *
48323150 GTAATTTTCAACCTACTCTTTTGCTACTTTAGAGAGATAAGGCTGGTGGCTAAAATATGCTCCAT
261 GCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCAT
* *
48323215 AGCCGATACATGGAGATAAAATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAGGAAGATAAG
326 AGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAAGAAGATAAG
48323280 ACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAATCTACTC
391 ACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAATCTACTC
*
48323345 TATAGCCGATACATAGAGATAA
456 CATAGCCGATACATAGAGATAA
48323367 AATCTGTAAT
Statistics
Matches: 2277, Mismatches: 150, Indels: 16
0.93 0.06 0.01
Matches are distributed among these distances:
976 2 0.00
978 538 0.24
979 927 0.41
980 810 0.36
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (978 bp):
AATCTGCTCCATAGCCGAAACATGGAGATAAGACTCACAATTTTCGATCTGCTCCATAGCCGATA
CATGGAGATAAGATACGTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTGG
CTAAAATCTGCTCCATAGCCGATAAATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCC
GATACATGGAGATAAGATCCGTAATTCTCAGTCTGCTCCATAGCCGATACATGGAGATAAGACCT
GCAATTTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCAT
AGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAAGAAGATAAG
ACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAAATCTACTC
CATAGCCGATACATAGAGATAAGACTCGCTATTTTTTATCTGCTCCATACCATACATGGAGATAA
AATCTGTAATTTTCAGTCTGCTTCCCTGCTACCTCAGGAAGATAAGACTTGTATCTTCAACCTGC
TCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGA
TAAGACTCGCCATTTTTTATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTTTTAGT
CTGCTTCCTTGCTACCTGAGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGA
GAGATAAGGCTAGTGGCTAAAATCTACTCTATAGCCGATACATGGAGATAAGACTCGCCATTTTT
GATCCGCTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTACCT
GAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGACTGGTGGC
TAA
Found at i:48323557 original size:45 final size:43
Alignment explanation
Indices: 48323470--48323566 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 43
48323460 GGTGGCTAAA
48323470 ATCTGCTCCATAGCCGATACATGGAGATAAGACTTACCATTTTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTTA-CATTTTT
48323514 CATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTA-ATTTTT
1 -ATCTGCTCCATAGCCGATACATGGAGATAAGA-CT-TACATTTTT
48323559 AGTCTGCT
1 A-TCTGCT
48323567 TCCTTGCTAC
Statistics
Matches: 49, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
44 1 0.02
45 44 0.90
46 2 0.04
47 2 0.04
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (43 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTTACATTTTT
Found at i:48323565 original size:178 final size:178
Alignment explanation
Indices: 48323337--48323915 Score: 854
Period size: 178 Copynumber: 3.3 Consensus size: 178
48323327 GGTGGCTAAA
* * * * * *
48323337 ATCTACTCTATAGCCGATACATAGAGATAAAATCTGTAATTTTCAGTCTGCTTCCCTACTACCTT
1 ATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTACTACCTG
* *
48323402 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTACTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCT
*
48323467 AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTTACCATTTTTC
131 AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTTTC
* *
48323515 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTG
1 ATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTACTACCTG
* * * *
48323580 AGGAATATAAGACTTGTATCTTCAACCTACTCTCTTTCTACCTTAGAGAGATAAGGCTAGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTACTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCT
* * * *
48323645 AAAATCTACTCCATAGTCGATACGTGGAGATAAGACTCACCATTTTTG
131 AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTTTC
* * * *
48323693 ATCTGTTCTATAGCCGATACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTACCTG
1 ATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTACTACCTG
* *
48323758 AGGAAGATAAGACTTGTATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGACTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTACTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCT
* * *
48323823 ACAATCTGCTCCATAGCTGAAACATGGAGATAAGACTCACCA-TTTTC
131 AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTTTC
* * * *
48323870 GATCTGCTTCATAGCCGATACATGGAGATAAGATCCGTAACTTTTA
1 -ATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTTA
48323916 ACCTGCTCTC
Statistics
Matches: 356, Mismatches: 44, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
177 4 0.01
178 352 0.99
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (178 bp):
ATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTACTACCTG
AGGAAGATAAGACTTGTATCTTCAACCTACTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCT
AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTTTC
Found at i:48323569 original size:935 final size:935
Alignment explanation
Indices: 48322402--48324170 Score: 3043
Period size: 935 Copynumber: 1.9 Consensus size: 935
48322392 GCTATTTTTT
* * *
48322402 ATCTGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTTTCAGTCTACTTCCCTGCTACCTC
1 ATCTACTCCATAGCCGATACATAGAGATAAAATCTGTAATTTTCAGTCTACTTCCCTACTACCTC
* *
48322467 AGGAAGATAAGACTTGTATCTTCAACTTGCTCTCTTACTACCTCAGAGACATAAGGTTGGTGGTT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGACATAAGGTTGGTGGCT
* *
48322532 AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTTATCTGCTCCATAGCCGA
131 AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTTTCATCTGCTCCATAGCCGA
48322597 TACATGGAGATAAGATCTATAATTTTTAGTATGCTTCCTTGCTACCTGAGGAATATAAGACTTGT
196 TACATGGAGATAAGATCTATAATTTTTAGTATGCTTCCTTGCTACCTGAGGAATATAAGACTTGT
* *
48322662 ATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCTATAGC
261 ATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGC
* *
48322727 CGATACATGGAGATAAGACTCGCCATTTTTTATCCGCTCTATAGCCGATACATAGAGATAATATC
326 CGATACATGGAGATAAGACTCACCATTTTTGATCCGCTCTATAGCCGATACATAGAGATAATATC
*
48322792 TGTAATTTTTAGTCTACTTCCTTACTACCTGAGGAAGATAAGACTTGTATCTTCAACCTGCTCTC
391 TGTAATTTTTAGTCTACTTCCTTACTACCTGAGGAAGATAAGACTTGTATCTTCAACCTACTCTC
* *
48322857 TTGTTACTTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGAAACATGGAGATAAG
456 TTGCTACCTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGAAACATGGAGATAAG
*
48322922 ACTCACAATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATACTTAACTTTCAACCTAC
521 ACTCACAATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATACGTAACTTTCAACCTAC
*
48322987 TCTCTTGCTACTTCAGAGAGATAAGGCTAGTGGCTAAAATATGCTCTATAGCCGATAAATGGAGA
586 TCTCTTGCTACTTCAGAGAGATAAGGCTAGTGGCTAAAATATGCTCCATAGCCGATAAATGGAGA
*
48323052 TAAGACTCGCCTTTTTTGATCTGATCCATAGCCGATACATGGAGATAAGATCCATAATTCTCAGT
651 TAAGACTCGCCATTTTTGATCTGATCCATAGCCGATACATGGAGATAAGATCCATAATTCTCAGT
* * * ** *
48323117 CTGCTCCATAGCCGATATATGGAGATAATACCTGTAATTTTCAACCTACTCTTTTGCTACTTTAG
716 CCGCTCCATAGCCGATACATGGAGATAAGACCTACAATTTTCAACCTACTCTCTTGCTACTTTAG
*
48323182 AGAGATAAGGCTGGTGGCTAAAATATGCTCCATAGCCGATACATGGAGATAAAATCTGTAATTCT
781 AGAGATAAGGCTGGTGGCTAAAATATGCTCCATAGCCGAGACATGGAGATAAAATCTGTAATTCT
48323247 CAGTCTGCTTCCTTGGTACCTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCT
846 CAGTCTGCTTCCTTGGTACCTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCT
48323312 CAAAGAGATAAGGCTGGTGGCTAAA
911 CAAAGAGATAAGGCTGGTGGCTAAA
* * *
48323337 ATCTACTCTATAGCCGATACATAGAGATAAAATCTGTAATTTTCAGTCTGCTTCCCTACTACCTT
1 ATCTACTCCATAGCCGATACATAGAGATAAAATCTGTAATTTTCAGTCTACTTCCCTACTACCTC
*
48323402 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGACATAAGGTTGGTGGCT
*
48323467 AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTTACCATTTTTCATCTGCTCCATAGCCGA
131 AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTTTCATCTGCTCCATAGCCGA
* *
48323532 TACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTGAGGAATATAAGACTTGT
196 TACATGGAGATAAGATCTATAATTTTTAGTATGCTTCCTTGCTACCTGAGGAATATAAGACTTGT
* * *
48323597 ATCTTCAACCTACTCTCTTTCTACCTTAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGT
261 ATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGC
* * *
48323662 CGATACGTGGAGATAAGACTCACCATTTTTGATCTGTTCTATAGCCGATACATAGAGATAATATC
326 CGATACATGGAGATAAGACTCACCATTTTTGATCCGCTCTATAGCCGATACATAGAGATAATATC
48323727 TGTAATTTTTAGTCTACTTCCTTACTACCTGAGGAAGATAAGACTTGTATCTTCAACCTACTCTC
391 TGTAATTTTTAGTCTACTTCCTTACTACCTGAGGAAGATAAGACTTGTATCTTCAACCTACTCTC
* *
48323792 TTGCTACCTCAGAGAGATAAGACTGGTGGCTACAATCTGCTCCATAGCTGAAACATGGAGATAAG
456 TTGCTACCTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGAAACATGGAGATAAG
* * * * *
48323857 ACTCACCATTTTCGATCTGCTTCATAGCCGATACATGGAGATAAGATCCGTAACTTTTAACCTGC
521 ACTCACAATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATACGTAACTTTCAACCTAC
* *
48323922 TCTCTTGCTACTTTAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATAGCCGATAAATGGAGA
586 TCTCTTGCTACTTCAGAGAGATAAGGCTAGTGGCTAAAATATGCTCCATAGCCGATAAATGGAGA
* * * *
48323987 TAATACTCTCCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGT
651 TAAGACTCGCCATTTTTGATCTGATCCATAGCCGATACATGGAGATAAGATCCATAATTCTCAGT
* * *
48324052 CCGCTCTATAGCCGATACATGGAGATAAGACCTACAATTTTTAACCTGCTCTCTTGCTACTTTAG
716 CCGCTCCATAGCCGATACATGGAGATAAGACCTACAATTTTCAACCTACTCTCTTGCTACTTTAG
* *
48324117 AGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGAGATATGGAGATAAAA
781 AGAGATAAGGCTGGTGGCTAAAATATGCTCCATAGCCGAGACATGGAGATAAAA
48324171 CTCGTCATTT
Statistics
Matches: 779, Mismatches: 55, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
935 779 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (935 bp):
ATCTACTCCATAGCCGATACATAGAGATAAAATCTGTAATTTTCAGTCTACTTCCCTACTACCTC
AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGACATAAGGTTGGTGGCT
AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATTTTTCATCTGCTCCATAGCCGA
TACATGGAGATAAGATCTATAATTTTTAGTATGCTTCCTTGCTACCTGAGGAATATAAGACTTGT
ATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGC
CGATACATGGAGATAAGACTCACCATTTTTGATCCGCTCTATAGCCGATACATAGAGATAATATC
TGTAATTTTTAGTCTACTTCCTTACTACCTGAGGAAGATAAGACTTGTATCTTCAACCTACTCTC
TTGCTACCTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGAAACATGGAGATAAG
ACTCACAATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATACGTAACTTTCAACCTAC
TCTCTTGCTACTTCAGAGAGATAAGGCTAGTGGCTAAAATATGCTCCATAGCCGATAAATGGAGA
TAAGACTCGCCATTTTTGATCTGATCCATAGCCGATACATGGAGATAAGATCCATAATTCTCAGT
CCGCTCCATAGCCGATACATGGAGATAAGACCTACAATTTTCAACCTACTCTCTTGCTACTTTAG
AGAGATAAGGCTGGTGGCTAAAATATGCTCCATAGCCGAGACATGGAGATAAAATCTGTAATTCT
CAGTCTGCTTCCTTGGTACCTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCT
CAAAGAGATAAGGCTGGTGGCTAAA
Found at i:48323811 original size:757 final size:755
Alignment explanation
Indices: 48322580--48323989 Score: 1890
Period size: 757 Copynumber: 1.9 Consensus size: 755
48322570 GCCATTTTTT
* * * * * *
48322580 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTTTTAGTATGCTTCCTTGCTACCTG
1 ATCTACTCCATAGCCGATACATAGAGATAAAATCTATAATTTTCAGTATGCTTCCCTACTACCTG
* *
48322645 AGGAATATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTAGTGGCT
* * * *
48322710 AAAATCTACTCTATAGCCGATACATGGAGATAAGACTCGCCATTTTTTATCCGCTCTATAGCCGA
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCACCATTTTTCATCCGCTCCATAGCCGA
*
48322775 TACATAGAGATAATATCTGTAATTTTTAGTCTACTTCCTTACTACCTGAGGAAGATAAGACTTGT
196 TACATAGAGATAAGATCTGTAATTTTTAGTCTACTTCCTTACTACCTGAGGAAGATAAGACTTGT
* * *
48322840 ATCTTCAACCTGCTCTCTTGTTACTTCAGAGAGATAAGACTGGTGGCTAAAATCTGCTCCATAGC
261 ATCTTCAACCTACTCTCTTGTTACTTCAGAGAGATAAGACTAGTGGCTAAAATCTACTCCATAGC
*
48322905 CGAAACATGGAGATAAGACTCACAATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATA
326 CGAAACATGGAGATAAGACTCACAATTTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATA
* * * * * *
48322970 CTTAACTTTCAACCTACTCTCTTGCTACTTCAGAGAGATAAGGCTAGTGGCTAAAATATGCTCTA
391 CTTAACTTTCAACCTACTCTCTTACTACCTCAGAGAGATAAGACTAGTAGCTAAAACATACTCTA
** *** *
48323035 TAGCCGATAAATGGAGATAAGACTCGCCT-TTTTTGATCTGATCCATAGCCGATACATGGAGATA
456 TAGCCGATAAA-GGAGATAAGACT-G-CTGGCTACAATCTGATCCATAGCCGAAACATGGAGATA
* * *
48323099 AGA-TCCATAATTCTC-AGTCTGCTCCATAGCCGATATATGGAGATAATA-CCTGTAA-TTTTCA
518 AGACT-CACAATTCTCGA-TCTGCTCCATAGCCGATACATGGAGATAAGATCC-GTAACTTTT-A
* * *
48323160 ACCTACTCTTTTGCTACTTTAGAGAGATAAGGCTGGTGGCTAAAATATGCTCCATAGCCGATACA
579 ACCTACTCTCTTGCTACTTTAGAGAGATAAGGCTAGTGGCTAAAATATGCTCCATAGCCGATAAA
48323225 TGGAGATAAAATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAGGAAGATAAGACTTGTATCT
644 TGGAGATAAAATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAGGAAGATAAGACTTGTATCT
48323290 TCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAA
709 TCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAA
* * * *
48323337 ATCTACTCTATAGCCGATACATAGAGATAAAATCTGTAATTTTCAGTCTGCTTCCCTACTACCTT
1 ATCTACTCCATAGCCGATACATAGAGATAAAATCTATAATTTTCAGTATGCTTCCCTACTACCTG
* *
48323402 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCT
66 AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTAGTGGCT
* * *
48323467 AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTTACCATTTTTCATCTGCTCCATAGCCGA
131 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCACCATTTTTCATCCGCTCCATAGCCGA
* * * *
48323532 TACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTGAGGAATATAAGACTTGT
196 TACATAGAGATAAGATCTGTAATTTTTAGTCTACTTCCTTACTACCTGAGGAAGATAAGACTTGT
*
48323597 ATCTTCAACCTACTCTCTT-TCTACCTT-AGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATA
261 ATCTTCAACCTACTCTCTTGT-TA-CTTCAGAGAGATAAGACTAGTGGCTAAAATCTACTCCATA
* * * * * * * *
48323660 GTCGATACGTGGAGATAAGACTCACCATTTTTGATCTGTTCTATAGCCGATACATAGAGATAATA
324 GCCGAAACATGGAGATAAGACTCACAATTTTCGATCTGCTCCATAGCCGATACATAGAGATAAGA
* * ** * * * ** *
48323725 T-CTGTAATTTTTAGTCTACT-TCCTTACTACCTGAG-GAAGATAAGACTTGTATCTTCAACCTA
389 TACT-TAACTTTCAACCTACTCT-CTTACTACCTCAGAG-AGATAAGACTAGTAGCTAAAACATA
* * * * * * *
48323787 CTCTCTTGCTAC-CT-CAGAGAGATAAGACTGGTGGCTACAATCTGCTCCATAGCTGAAACATGG
451 CTCTATAGC--CGATAAAG-GAGATAAGACTGCTGGCTACAATCTGATCCATAGCCGAAACATGG
* * *
48323850 AGATAAGACTCACCATTTTCGATCTGCTTCATAGCCGATACATGGAGATAAGATCCGTAACTTTT
513 AGATAAGACTCACAATTCTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAACTTTT
* *
48323915 AACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATAGCCGATAA
578 AACCTACTCTCTTGCTACTTTAGAGAGATAAGGCTAGTGGCTAAAATATGCTCCATAGCCGATAA
48323980 ATGGAGATAA
643 ATGGAGATAA
48323990 TACTCTCCAT
Statistics
Matches: 561, Mismatches: 79, Indels: 27
0.84 0.12 0.04
Matches are distributed among these distances:
755 1 0.00
756 146 0.26
757 409 0.73
758 4 0.01
759 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (755 bp):
ATCTACTCCATAGCCGATACATAGAGATAAAATCTATAATTTTCAGTATGCTTCCCTACTACCTG
AGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTAGTGGCT
AAAATCTACTCCATAGCCGATACATGGAGATAAGACTCACCATTTTTCATCCGCTCCATAGCCGA
TACATAGAGATAAGATCTGTAATTTTTAGTCTACTTCCTTACTACCTGAGGAAGATAAGACTTGT
ATCTTCAACCTACTCTCTTGTTACTTCAGAGAGATAAGACTAGTGGCTAAAATCTACTCCATAGC
CGAAACATGGAGATAAGACTCACAATTTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATA
CTTAACTTTCAACCTACTCTCTTACTACCTCAGAGAGATAAGACTAGTAGCTAAAACATACTCTA
TAGCCGATAAAGGAGATAAGACTGCTGGCTACAATCTGATCCATAGCCGAAACATGGAGATAAGA
CTCACAATTCTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAACTTTTAACCTACT
CTCTTGCTACTTTAGAGAGATAAGGCTAGTGGCTAAAATATGCTCCATAGCCGATAAATGGAGAT
AAAATCTGTAATTCTCAGTCTGCTTCCTTGGTACCTCAGGAAGATAAGACTTGTATCTTCAACCT
GCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAA
Found at i:48323940 original size:134 final size:134
Alignment explanation
Indices: 48323781--48324043 Score: 411
Period size: 134 Copynumber: 2.0 Consensus size: 134
48323771 TTGTATCTTC
* * *
48323781 AACCTACTCTCTTGCTACCTCAGAGAGATAAGACTGGTGGCTACAATCTGCTCCATAGCTGA-AA
1 AACCTACTCTCTTGCTACCTCAGAGAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATAA
*
48323845 CATGGAGATAAGACTCACCATTTTCGATCTGCTTCATAGCCGATACATGGAGATAAGATCCGTAA
66 -ATGGAGATAAGACTCACCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAA
48323910 CTTTT
130 CTTTT
* * * *
48323915 AACCTGCTCTCTTGCTACTTTAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATAGCCGATAA
1 AACCTACTCTCTTGCTACCTCAGAGAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATAA
* * *
48323980 ATGGAGATAATACTCTCCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAA
66 ATGGAGATAAGACTCACCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAA
48324044 TTCTCAGTCC
Statistics
Matches: 117, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
134 115 0.98
135 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (134 bp):
AACCTACTCTCTTGCTACCTCAGAGAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATAA
ATGGAGATAAGACTCACCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCCGTAAC
TTTT
Found at i:48324065 original size:179 final size:178
Alignment explanation
Indices: 48323880--48324231 Score: 555
Period size: 179 Copynumber: 2.0 Consensus size: 178
48323870 GATCTGCTTC
48323880 ATAGCCGATACATGGAGATAAGATCCGT-AACTTTTAACCTGCTCTCTTGCTACTTTAGAGAGAT
1 ATAGCCGATACATGGAGATAAGA-CC-TAAACTTTTAACCTGCTCTCTTGCTACTTTAGAGAGAT
* * *
48323944 AAGGCTAGTGGCTAAAATCTGCTCCATAGCCGATAAATGGAGATAATACTC-TCCATTTTTGATC
64 AAGGCTAGTGGCTAAAATCTGCTCCATAGCCGAGAAATGGAGATAAAACTCGT-CATTTTCGATC
*
48324008 TGCTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCCGCTCT
128 TACTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCCGCTCT
*
48324059 ATAGCCGATACATGGAGATAAGACCTACAATTTTTAACCTGCTCTCTTGCTACTTTAGAGAGATA
1 ATAGCCGATACATGGAGATAAGACCTA-AACTTTTAACCTGCTCTCTTGCTACTTTAGAGAGATA
* * *
48324124 AGGCTGGTGGCTAAAATCTGCTCCATAGCCGAGATATGGAGATAAAACTCGTCATTTTCGATTTA
65 AGGCTAGTGGCTAAAATCTGCTCCATAGCCGAGAAATGGAGATAAAACTCGTCATTTTCGATCTA
* * *
48324189 CTTCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTC
130 CTCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTC
48324232 TGCTTTCTTG
Statistics
Matches: 159, Mismatches: 11, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
177 1 0.01
178 2 0.01
179 155 0.97
180 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (178 bp):
ATAGCCGATACATGGAGATAAGACCTAAACTTTTAACCTGCTCTCTTGCTACTTTAGAGAGATAA
GGCTAGTGGCTAAAATCTGCTCCATAGCCGAGAAATGGAGATAAAACTCGTCATTTTCGATCTAC
TCCATAGCCGATACATGGAGATAAGATCCGTAATTCTCAGTCCGCTCT
Found at i:48324103 original size:45 final size:44
Alignment explanation
Indices: 48323962--48324102 Score: 142
Period size: 45 Copynumber: 3.1 Consensus size: 44
48323952 TGGCTAAAAT
* * * * *
48323962 CTGCTCCATAGCCGATAAATGGAGATAATACTCTCCATTTTTGAT
1 CTGCTCCATAGCCGATACATGGAGATAAGAC-CTCAATTTTTAAC
* * *
48324007 CTGCTCCATAGCCGATACATGGAGATAAGATCCGT-AATTCTCAGTC
1 CTGCTCCATAGCCGATACATGGAGATAAGA-CC-TCAATTTTTA-AC
*
48324053 C-GCTCTATAGCCGATACATGGAGATAAGACCTACAATTTTTAAC
1 CTGCTCCATAGCCGATACATGGAGATAAGACCT-CAATTTTTAAC
48324097 CTGCTC
1 CTGCTC
48324103 TCTTGCTACT
Statistics
Matches: 78, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 4 0.05
45 70 0.90
46 3 0.04
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (44 bp):
CTGCTCCATAGCCGATACATGGAGATAAGACCTCAATTTTTAAC
Found at i:48324122 original size:90 final size:88
Alignment explanation
Indices: 48323879--48324168 Score: 243
Period size: 89 Copynumber: 3.2 Consensus size: 88
48323869 CGATCTGCTT
*
48323879 CATAGCCGATACATGGAGATAAGATCCGT-AACTTTTAACCTGCTCTCTTGCTACTTTAGAGAGA
1 CATAGCCGATACATGGAGATAAGA-CC-TCAATTTTTAACCTGCTCTCTTGCTACTTTAGAGAGA
* * *
48323943 TAAGGCTAGTGGCTAAAATCTGCTC
64 TAAGCCTAATGGCTAAAATCCGCTC
* * * * * * *
48323968 CATAGCCGATAAATGGAGATAATACTCTCCATTTTTGATCTGCTC-CATAGCCGATAC-AT-G-G
1 CATAGCCGATACATGGAGATAAGAC-CTCAATTTTTAACCTGCTCTC-TTG-C--TACTTTAGAG
* * *
48324029 AGATAAGATCCGTAAT-TCT-CAGTCCGCTC
61 AGATAAG--CC-TAATGGCTAAAATCCGCTC
*
48324058 TATAGCCGATACATGGAGATAAGACCTACAATTTTTAACCTGCTCTCTTGCTACTTTAGAGAGAT
1 CATAGCCGATACATGGAGATAAGACCT-CAATTTTTAACCTGCTCTCTTGCTACTTTAGAGAGAT
* ** *
48324123 AAGGCTGGTGGCTAAAATCTGCTC
65 AAGCCTAATGGCTAAAATCCGCTC
* *
48324147 CATAGCCGAGATATGGAGATAA
1 CATAGCCGATACATGGAGATAA
48324169 AACTCGTCAT
Statistics
Matches: 153, Mismatches: 32, Indels: 32
0.71 0.15 0.15
Matches are distributed among these distances:
87 5 0.03
88 7 0.05
89 75 0.49
90 55 0.36
91 5 0.03
92 6 0.04
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (88 bp):
CATAGCCGATACATGGAGATAAGACCTCAATTTTTAACCTGCTCTCTTGCTACTTTAGAGAGATA
AGCCTAATGGCTAAAATCCGCTC
Found at i:48330298 original size:125 final size:126
Alignment explanation
Indices: 48330169--48330468 Score: 331
Period size: 126 Copynumber: 2.4 Consensus size: 126
48330159 GTAAATTGCC
* ** * * * *
48330169 ACCCAGCACGATTGGGCACGATTTAC-CAAA-TTTCTAAATACGAAATATTGTCTCATTTTAA-T
1 ACCCAGCACGATAGGGCACGATTT-CTCAAACTCCCCAAACACAAAATATTGCCTCATTTTAATT
* * * *
48330231 TTAAGAAAACATGGATGAAA-TGTCAAAAGAATATTCCGTATCTTAGTCGAATGAAAAATCGAA
65 TTAA-AAAACATGGACGAAATTGTC-AAAGAACATCCCGTATCTTAGTCGAACGAAAAATCGAA
* *
48330294 ACCCAGCACGATAGGACACGATCTCTCAAACTCCCCAAACACAAAATATTGCCTCATTTTAATTT
1 ACCCAGCACGATAGGGCACGATTTCTCAAACTCCCCAAACACAAAATATTGCCTCATTTTAATTT
* * * * *
48330359 TAAAAAGCATGGACGAAATTTTCAAAGGACATCCCGTATTTTAGTTGAACGAAAAATCGAA
66 TAAAAAACATGGACGAAATTGTCAAAGAACATCCCGTATCTTAGTCGAACGAAAAATCGAA
* * * * *
48330420 ACCCAGCATGACAGGGCACGATTCCTCGAACT-CCCAAACACGAAATATT
1 ACCCAGCACGATAGGGCACGATTTCTCAAACTCCCCAAACACAAAATATT
48330469 TCCTTATGTT
Statistics
Matches: 146, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
124 1 0.01
125 41 0.28
126 96 0.66
127 8 0.05
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.25
Consensus pattern (126 bp):
ACCCAGCACGATAGGGCACGATTTCTCAAACTCCCCAAACACAAAATATTGCCTCATTTTAATTT
TAAAAAACATGGACGAAATTGTCAAAGAACATCCCGTATCTTAGTCGAACGAAAAATCGAA
Found at i:48330871 original size:17 final size:15
Alignment explanation
Indices: 48330831--48330876 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
48330821 ATATAAATAG
* *
48330831 AAATAAAAATACAAT
1 AAATAGAAATATAAT
48330846 AAATAGAAATATAAT
1 AAATAGAAATATAAT
48330861 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
48330877 ATAGATAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 15 0.56
16 1 0.04
17 11 0.41
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:48330886 original size:14 final size:13
Alignment explanation
Indices: 48330846--48330948 Score: 59
Period size: 14 Copynumber: 7.2 Consensus size: 13
48330836 AAAATACAAT
48330846 AAATAGA-AATATA
1 AAATAGATAA-ATA
*
48330859 ATAATAGTAGAAATA
1 A-AATAG-ATAAATA
48330874 TAAATAGATAAATA
1 -AAATAGATAAATA
48330888 AAATTAGATAAATA
1 AAA-TAGATAAATA
48330902 ATAATAGTATTAGAATA
1 A-AATAG-A-TA-AATA
*
48330919 ACAA-AAATAAATA
1 A-AATAGATAAATA
48330932 TAAATAGA-AACATA
1 -AAATAGATAA-ATA
48330946 AAA
1 AAA
48330949 ATAATAGCAA
Statistics
Matches: 74, Mismatches: 4, Indels: 24
0.73 0.04 0.24
Matches are distributed among these distances:
13 15 0.20
14 33 0.45
15 13 0.18
16 6 0.08
17 7 0.09
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (13 bp):
AAATAGATAAATA
Found at i:48330905 original size:29 final size:30
Alignment explanation
Indices: 48330843--48330905 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
48330833 ATAAAAATAC
48330843 AATAAATAGAAATATAATAATAGTAGAAAT
1 AATAAATAGAAATATAATAATAGTAGAAAT
*
48330873 -ATAAATAGATAA-ATAA-AATTAG-ATAAAT
1 AATAAATAGA-AATATAATAA-TAGTAGAAAT
48330901 AATAA
1 AATAA
48330906 TAGTATTAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
28 7 0.24
29 20 0.69
30 2 0.07
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (30 bp):
AATAAATAGAAATATAATAATAGTAGAAAT
Found at i:48332037 original size:3 final size:3
Alignment explanation
Indices: 48332031--48332056 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
48332021 ATGATGAATT
48332031 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
48332057 TGATGATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:48339607 original size:35 final size:36
Alignment explanation
Indices: 48339569--48339685 Score: 175
Period size: 35 Copynumber: 3.3 Consensus size: 36
48339559 CAATGATATG
* * *
48339569 CAATCTTAGATATGA-TACAATCTTAGATATTATTG
1 CAATCTTAGATATGATTGCAATCTTAGATATGATTA
*
48339604 CAATCTTAGATATGATTGCAGTCTTAGATATGA-TA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATTA
48339639 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGAT-TA
48339676 CAATCTTAGA
1 CAATCTTAGA
48339686 AGATATGATT
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
35 48 0.65
36 14 0.19
37 12 0.16
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.38
Consensus pattern (36 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATTA
Found at i:48339609 original size:18 final size:18
Alignment explanation
Indices: 48339561--48339685 Score: 173
Period size: 18 Copynumber: 6.9 Consensus size: 18
48339551 ATAATCTTCA
48339561 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
48339580 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
48339597 ATTATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
48339615 ATGATTGCAGTCTTAGAT
1 ATGATTGCAATCTTAGAT
*
48339633 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
48339650 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
48339668 ATGATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
48339686 AGATATGATT
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
17 30 0.32
18 49 0.52
19 15 0.16
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:48339630 original size:53 final size:54
Alignment explanation
Indices: 48339561--48339685 Score: 216
Period size: 53 Copynumber: 2.3 Consensus size: 54
48339551 ATAATCTTCA
*
48339561 ATGATATGCAATCTTAGATATGATACAATCTTAGATATTATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
*
48339615 ATGAT-TGCAGTCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
*
48339668 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
48339686 AGATATGATT
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
53 51 0.77
54 15 0.23
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (54 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
Found at i:48351190 original size:19 final size:19
Alignment explanation
Indices: 48351166--48351211 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
48351156 TGTAAAGTTT
*
48351166 AATGCACATG-ATGCAATG
1 AATGCAAATGCATGCAATG
*
48351184 CAATGCAAATGCATGGAATG
1 -AATGCAAATGCATGCAATG
48351204 AATGCAAA
1 AATGCAAA
48351212 AGAAAGTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.20
Consensus pattern (19 bp):
AATGCAAATGCATGCAATG
Found at i:48352831 original size:125 final size:126
Alignment explanation
Indices: 48352700--48352999 Score: 349
Period size: 126 Copynumber: 2.4 Consensus size: 126
48352690 GTAAATTGCC
* ** * * *
48352700 ACCCAGCACGATTGGGCACGATTTAC-CAAA-TTTCTAAATACGAAATATTGTCTCATTTTAA-T
1 ACCCAGCACGATAGGGCACGATTT-CTCAAACTCCCCAAACACGAAATATTGCCTCATTTTAATT
* * * *
48352762 TTAAGAAAACATGGATGAAA-TGTCAAAAGGATATTCCGTATCTTAGTCGAATGAAAAATCGAA
65 TTAA-AAAACATGGACGAAATTGTC-AAAGGACATCCCGTATCTTAGTCGAACGAAAAATCGAA
* * *
48352825 ATCCAGCACGATAGGACACGATCTCTCAAACTCCCCAAACACGAAATATTGCCTCATTTTAATTT
1 ACCCAGCACGATAGGGCACGATTTCTCAAACTCCCCAAACACGAAATATTGCCTCATTTTAATTT
* * * * *
48352890 TAAAAAGCATGGACGAAATTTTCAAAGGACATCCCGTATTTTAGTTGAACGAAATATCGAA
66 TAAAAAACATGGACGAAATTGTCAAAGGACATCCCGTATCTTAGTCGAACGAAAAATCGAA
* * *
48352951 ACCCAGCATGATAGGGCACGATTCCTCGAACT-CCCAAACACGAAATATT
1 ACCCAGCACGATAGGGCACGATTTCTCAAACTCCCCAAACACGAAATATT
48353000 TCCTTATGTT
Statistics
Matches: 147, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
124 1 0.01
125 41 0.28
126 97 0.66
127 8 0.05
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (126 bp):
ACCCAGCACGATAGGGCACGATTTCTCAAACTCCCCAAACACGAAATATTGCCTCATTTTAATTT
TAAAAAACATGGACGAAATTGTCAAAGGACATCCCGTATCTTAGTCGAACGAAAAATCGAA
Found at i:48353368 original size:23 final size:23
Alignment explanation
Indices: 48353302--48353368 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
48353292 TATAAGAAAA
*
48353302 ATAAT-AAT-GAAA-ATAATATT
1 ATAATAAATAGAAATATAATAAT
48353322 AGTATATAAATAGAAATA-AA-AAT
1 A-TA-ATAAATAGAAATATAATAAT
48353345 ATAATAAATAGAAATATAATAAT
1 ATAATAAATAGAAATATAATAAT
48353368 A
1 A
48353369 GTAGAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 6 0.15
23 10 0.26
24 6 0.15
25 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (23 bp):
ATAATAAATAGAAATATAATAAT
Found at i:48353375 original size:17 final size:15
Alignment explanation
Indices: 48353335--48353380 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
48353325 ATATAAATAG
*
48353335 AAATAAAAATATAAT
1 AAATAGAAATATAAT
48353350 AAATAGAAATATAAT
1 AAATAGAAATATAAT
48353365 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
48353381 ATAGATAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:48354267 original size:23 final size:22
Alignment explanation
Indices: 48354225--48354272 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
48354215 TATTTATTGA
*
48354225 TTACATAATTATTTAGTTTACT
1 TTACATAATTATTTAATTTACT
*
48354247 TTACAT-ATTATATTAAATTTATT
1 TTACATAATTAT-TT-AATTTACT
48354270 TTA
1 TTA
48354273 AGCTTACCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 5 0.23
22 8 0.36
23 9 0.41
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.56
Consensus pattern (22 bp):
TTACATAATTATTTAATTTACT
Found at i:48354552 original size:3 final size:3
Alignment explanation
Indices: 48354546--48354575 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
48354536 AGAAGAAGAA
48354546 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
48354576 TGATTGATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:48356892 original size:2 final size:2
Alignment explanation
Indices: 48356887--48356919 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
48356877 CATATATATA
48356887 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
48356920 TTAATTCTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:48362117 original size:35 final size:36
Alignment explanation
Indices: 48362079--48362195 Score: 184
Period size: 35 Copynumber: 3.3 Consensus size: 36
48362069 CAATGATGTG
* * *
48362079 CAATCTTAGATATGA-TACAATCTTAGATATTATTG
1 CAATCTTAGATATGATTGCAATCTTAGATATGATTA
48362114 CAATCTTAGATATGATTGCAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATTA
48362149 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGAT-TA
48362186 CAATCTTAGA
1 CAATCTTAGA
48362196 AGATATGATT
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
35 49 0.64
36 15 0.20
37 12 0.16
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.38
Consensus pattern (36 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATTA
Found at i:48362119 original size:18 final size:18
Alignment explanation
Indices: 48362071--48362195 Score: 182
Period size: 18 Copynumber: 6.9 Consensus size: 18
48362061 ATAATCTTCA
48362071 ATGATGTGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
48362090 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
48362107 ATTATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
48362125 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
48362143 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
48362160 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
48362178 ATGATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
48362196 AGATATGATT
Statistics
Matches: 96, Mismatches: 7, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
17 31 0.32
18 50 0.52
19 15 0.16
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:48362135 original size:53 final size:54
Alignment explanation
Indices: 48362071--48362195 Score: 216
Period size: 53 Copynumber: 2.3 Consensus size: 54
48362061 ATAATCTTCA
* *
48362071 ATGATGTGCAATCTTAGATATGATACAATCTTAGATATTATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
48362125 ATGAT-TGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
*
48362178 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
48362196 AGATATGATT
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
53 52 0.76
54 16 0.24
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (54 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
Found at i:48368636 original size:17 final size:17
Alignment explanation
Indices: 48368614--48368650 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
48368604 CTTCTATTTC
48368614 AAAAAAAAGGAAAAAAA
1 AAAAAAAAGGAAAAAAA
*
48368631 AAAAAAAATGAAAAAAA
1 AAAAAAAAGGAAAAAAA
48368648 AAA
1 AAA
48368651 TGGAGAGGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.08, T:0.03
Consensus pattern (17 bp):
AAAAAAAAGGAAAAAAA
Found at i:48369626 original size:44 final size:44
Alignment explanation
Indices: 48369566--48369747 Score: 163
Period size: 44 Copynumber: 4.1 Consensus size: 44
48369556 CAAAGAAACA
* *
48369566 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGG
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * **
48369610 AGATCTGACATTCCTGTGCTTACAGCGAAGCAGATTGAAGATTTC
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* * *
48369655 AG--CATGGCATCCCTATGTTTATAGGGAA-TGAGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * *
48369698 AAATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
*
48369742 AAATCT
1 AGATCT
48369748 AACCTTCAGA
Statistics
Matches: 106, Mismatches: 26, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
42 2 0.02
43 11 0.10
44 78 0.74
45 15 0.14
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (44 bp):
AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:48369865 original size:34 final size:34
Alignment explanation
Indices: 48369822--48369900 Score: 140
Period size: 34 Copynumber: 2.3 Consensus size: 34
48369812 CAAATCGAGG
48369822 ACATAGCAGATTTGAATCTCAGATGCTCTTAGAC
1 ACATAGCAGATTTGAATCTCAGATGCTCTTAGAC
* *
48369856 ACATAGCAGATTTGACTCTCAGATGTTCTTAGAC
1 ACATAGCAGATTTGAATCTCAGATGCTCTTAGAC
48369890 ACATAGCAGAT
1 ACATAGCAGAT
48369901 CTAACCTTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (34 bp):
ACATAGCAGATTTGAATCTCAGATGCTCTTAGAC
Found at i:48369912 original size:34 final size:33
Alignment explanation
Indices: 48369822--48369914 Score: 116
Period size: 34 Copynumber: 2.7 Consensus size: 33
48369812 CAAATCGAGG
48369822 ACATAGCAGATTTGAA-TCTCAGATGCTCTTAGAC
1 ACATAGCAGATTT-AACT-TCAGATGCTCTTAGAC
* *
48369856 ACATAGCAGATTTGACTCTCAGATGTTCTTAGAC
1 ACATAGCAGATTTAACT-TCAGATGCTCTTAGAC
*
48369890 ACATAGCAGATCTAACCTTCAGATG
1 ACATAGCAGATTTAA-CTTCAGATG
48369915 ATTAGACTGA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
33 1 0.02
34 50 0.94
35 2 0.04
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (33 bp):
ACATAGCAGATTTAACTTCAGATGCTCTTAGAC
Found at i:48370231 original size:83 final size:83
Alignment explanation
Indices: 48370139--48370850 Score: 1111
Period size: 83 Copynumber: 8.6 Consensus size: 83
48370129 GAAGTAGATC
*
48370139 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCG
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
48370204 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
* * ** *
48370222 CAAGATGGTTTGGCGTCATTGTGCTTACAAATAACAAATCAAGGACATAGCAGATTAGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
48370287 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
* * * * *
48370305 CAAGATGGTTTGGCATTCTTGTGCTTACAAGAAACAAATTGAGAACATAGCAGATTAGACTCTCG
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
48370370 GATGTTCTCAAATAGACT
66 GATGTTCTCAAACAGACT
* ** * * *
48370388 CAAGATGGTTTGGCGTCCTTGTGCTTACAAATAACAAATCAAGGACATAGCAGATTAAACTTTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
48370453 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
* * *
48370471 CAAGATGGTTTGGCATTCTTGTGCTTACAAGAAACAAATCGAGGACATAGCAAATTAGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
48370536 GATGTTCTCAAACAGGCT
66 GATGTTCTCAAACAGACT
48370554 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
48370619 GATGTTCTCAAATAGACT
66 GATGTTCTCAAACAGACT
* *
48370637 TAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
48370702 GATGTTCTCAAACTGACT
66 GATGTTCTCAAACAGACT
* * * * * *
48370720 CAAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGTAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
48370785 GATGTTCTCAAATAGACT
66 GATGTTCTCAAACAGACT
*
48370803 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGA-GACATA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATA
48370851 ACTGATTTGG
Statistics
Matches: 573, Mismatches: 56, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
82 6 0.01
83 567 0.99
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
GATGTTCTCAAACAGACT
Found at i:48371145 original size:219 final size:218
Alignment explanation
Indices: 48370752--48371151 Score: 660
Period size: 218 Copynumber: 1.8 Consensus size: 218
48370742 GTTTACAAGA
* *
48370752 AACAAATCGAGGACATAGTAGATTTGACTCTCAGATGTTCTCAAATAGACTCAAGATGATTTGGC
1 AACAAATCGAGGACATAGCAGATTTAACTCTCAGATGTTCTCAAATAGACTCAAGATGATTTGGC
* *
48370817 ATCCTTGTGCTTACAAGGAACAAATCGAGACATAACTGATTTGGCTTTCACGTGTTTACGATGAA
66 ATCCTTGTGCGTACAAGGAACAAATCGAGACATAACAGATTTGGCTTTCACGTGTTTACGATGAA
* *
48370882 GCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCAGGCATCTCCAC
131 GCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCAGGCATCTCCAC
48370947 TTCGATGGAAAGCAGATACATGG
196 TTCGATGGAAAGCAGATACATGG
48370970 AACAAATCGAGGACATAGCAGATTTAACTCTCAGATGTTCTCAAATAGA-TCCAAGATGATTTGG
1 AACAAATCGAGGACATAGCAGATTTAACTCTCAGATGTTCTCAAATAGACT-CAAGATGATTTGG
* * * * *
48371034 TATCCTTGTGCGTACAAGGAGCAAATTGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTG
65 CATCCTTGTGCGTACAAGGAACAAATCG-AGACATAACAGATTTGGCTTTCACGTGTTTACGATG
48371099 AAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA-AGGAACAAATCGAAG
129 AAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA-GAACAAATCGAAG
48371152 AAGCAGATTT
Statistics
Matches: 168, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
217 1 0.01
218 85 0.51
219 82 0.49
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (218 bp):
AACAAATCGAGGACATAGCAGATTTAACTCTCAGATGTTCTCAAATAGACTCAAGATGATTTGGC
ATCCTTGTGCGTACAAGGAACAAATCGAGACATAACAGATTTGGCTTTCACGTGTTTACGATGAA
GCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCAGGCATCTCCAC
TTCGATGGAAAGCAGATACATGG
Found at i:48371570 original size:17 final size:19
Alignment explanation
Indices: 48371548--48371767 Score: 209
Period size: 18 Copynumber: 12.4 Consensus size: 19
48371538 ATAGAAATAT
48371548 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
48371565 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
*
48371584 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
* *
48371601 AATCTTAGATATAAT-TGC
1 AATCTTACATATGATATGC
*
48371619 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
48371636 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
*
48371654 AATCTTAAATATGAT-TGC
1 AATCTTACATATGATATGC
*
48371672 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
48371689 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
*
48371707 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
48371724 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
* * *
48371742 AATCTTAGACATGATATAC
1 AATCTTACATATGATATGC
48371761 AATCTTA
1 AATCTTA
48371768 GAAGATATGA
Statistics
Matches: 182, Mismatches: 7, Indels: 26
0.85 0.03 0.12
Matches are distributed among these distances:
17 69 0.38
18 79 0.43
19 34 0.19
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:48371627 original size:35 final size:36
Alignment explanation
Indices: 48371556--48371769 Score: 301
Period size: 35 Copynumber: 6.0 Consensus size: 36
48371546 ATAATCTTCA
*
48371556 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGAT-TACAATCTTAGAT
* * *
48371594 ATGA-TACAATCTTAGATATAATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATTACAATCTTAGAT
* * *
48371629 ATGA-TACAATCTTAGATATGATTGCAATCTTAAAT
1 ATGATTGCAATCTTAGATATGATTACAATCTTAGAT
48371664 ATGATTGCAATCTTAGATATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATTACAATCTTAGAT
48371699 ATGATTGCAATCTTAGATATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATTACAATCTTAGAT
*
48371734 ATGATTGCAATCTTAGACATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATGAT-TACAATCTTAGA
48371770 AGATATGATT
Statistics
Matches: 165, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
35 117 0.71
36 32 0.19
37 12 0.07
38 4 0.02
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (36 bp):
ATGATTGCAATCTTAGATATGATTACAATCTTAGAT
Found at i:48371677 original size:53 final size:53
Alignment explanation
Indices: 48371556--48371769 Score: 306
Period size: 53 Copynumber: 4.0 Consensus size: 53
48371546 ATAATCTTCA
48371556 ATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGA-TACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATA--CAATCTTAGATATGATTACAATCTTAGAT
* * *
48371611 ATAATTGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAAAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGATATGATTACAATCTTAGAT
*
48371664 ATGATTGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGATATGATTACAATCTTAGAT
* * *
48371717 ATGA-TACAATCTTAGATATGATTGCAATCTTAGACATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATGA-TACAATCTTAGATATGAT-TACAATCTTAGA
48371770 AGATATGATT
Statistics
Matches: 147, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
52 31 0.21
53 82 0.56
54 30 0.20
55 4 0.03
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (53 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGATATGATTACAATCTTAGAT
Found at i:48371697 original size:88 final size:89
Alignment explanation
Indices: 48371556--48371769 Score: 376
Period size: 88 Copynumber: 2.4 Consensus size: 89
48371546 ATAATCTTCA
48371556 ATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATAATTGCAA
1 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATAATTGCAA
48371621 TCTTAGATATGATACAATCTTAGAT
65 TCTTAGATATGATACAATCTTAGAT
* *
48371646 ATGATTGCAATCTTAAATATGAT-TGCAATCTTAGATATGATACAATCTTAGATATGATTGCAAT
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATAATTGCAAT
48371710 CTTAGATATGATACAATCTTAGAT
66 CTTAGATATGATACAATCTTAGAT
* *
48371734 ATGATTGCAATCTTAGACATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGA
48371770 AGATATGATT
Statistics
Matches: 118, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
88 85 0.72
89 28 0.24
90 5 0.04
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (89 bp):
ATGATTGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATAATTGCAAT
CTTAGATATGATACAATCTTAGAT
Found at i:48376198 original size:24 final size:24
Alignment explanation
Indices: 48376166--48376215 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
48376156 TGTTAGAATT
48376166 ATCTATACTATATTTAAGATTTTG
1 ATCTATACTATATTTAAGATTTTG
*
48376190 ATCTCTACTATATTTAAGATTTTG
1 ATCTATACTATATTTAAGATTTTG
48376214 AT
1 AT
48376216 TGAGTTAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.32, C:0.10, G:0.08, T:0.50
Consensus pattern (24 bp):
ATCTATACTATATTTAAGATTTTG
Found at i:48377504 original size:13 final size:12
Alignment explanation
Indices: 48377486--48377520 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
48377476 GAATTTTTGC
48377486 TTTCTTTTCCCT
1 TTTCTTTTCCCT
*
48377498 ATTTCTTCTCCCT
1 -TTTCTTTTCCCT
48377511 TTTCTTTTCC
1 TTTCTTTTCC
48377521 ATCTTCATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.03, C:0.34, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTCTTTTCCCT
Found at i:48378432 original size:38 final size:37
Alignment explanation
Indices: 48378390--48378518 Score: 105
Period size: 38 Copynumber: 3.4 Consensus size: 37
48378380 ATTATTGGTT
*
48378390 ACATGCCTACCGTTACTGTTGAACCGATTACATGTTAA
1 ACATGCCTACTGTTACTGTTGAACCGA-TACATGTTAA
* * *
48378428 ACATGTCTACTGTTACTGATGAACTAGATACATGATTAA
1 ACATGCCTACTGTTACTGTTGAAC-CGATACATG-TTAA
* * * * **
48378467 AAATGCTTATTGTTACTATCAAACCGAATACATGTTAA
1 ACATGCCTACTGTTACTGTTGAACCG-ATACATGTTAA
* * *
48378505 GCATGTCTATTGTT
1 ACATGCCTACTGTT
48378519 TCTATACTGA
Statistics
Matches: 71, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
38 42 0.59
39 29 0.41
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.35
Consensus pattern (37 bp):
ACATGCCTACTGTTACTGTTGAACCGATACATGTTAA
Found at i:48378754 original size:91 final size:91
Alignment explanation
Indices: 48378598--48378768 Score: 254
Period size: 91 Copynumber: 1.9 Consensus size: 91
48378588 CTAATAGTTT
* * *
48378598 ACCTACAAACACTGGTGGTTTATCCACACACTTTTTGACAAATTTTATCTACAAACTCGTAGTGC
1 ACCTACAAACACTGGTGGTTTATCCACACAATTTCTGACAAATTTTATCTACAAACCCGTAGTGC
48378663 ATTCACAACCTACTGGTAGTGTATCA
66 ATTCACAACCTACTGGTAGTGTATCA
* ** * *
48378689 ACCTACAAACACTGGTGGTTTATCCACA-AATTTACTGGCAGCTTTTATCTATAAACCCGTTGTG
1 ACCTACAAACACTGGTGGTTTATCCACACAATTT-CTGACAAATTTTATCTACAAACCCGTAGTG
48378753 CATTCACAACCTACTG
65 CATTCACAACCTACTG
48378769 ACAGCGTATT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
90 4 0.06
91 67 0.94
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (91 bp):
ACCTACAAACACTGGTGGTTTATCCACACAATTTCTGACAAATTTTATCTACAAACCCGTAGTGC
ATTCACAACCTACTGGTAGTGTATCA
Found at i:48379005 original size:18 final size:18
Alignment explanation
Indices: 48378984--48379021 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
48378974 CTAAAAATTG
48378984 TTATTATGTATGC-TTGAT
1 TTATTAT-TATGCATTGAT
*
48379002 TTATTATTTTGCATTGAT
1 TTATTATTATGCATTGAT
48379020 TT
1 TT
48379022 TCTTATGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.21, C:0.05, G:0.13, T:0.61
Consensus pattern (18 bp):
TTATTATTATGCATTGAT
Found at i:48380737 original size:12 final size:12
Alignment explanation
Indices: 48380720--48380744 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48380710 ACTTAATCAC
48380720 TTTAATATTAAA
1 TTTAATATTAAA
48380732 TTTAATATTAAA
1 TTTAATATTAAA
48380744 T
1 T
48380745 ATTATTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:48383677 original size:32 final size:32
Alignment explanation
Indices: 48383631--48383692 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
48383621 GAATAAAGTA
*
48383631 TGTGTTGTACATCGATGCATCCTACACTGGTC
1 TGTGGTGTACATCGATGCATCCTACACTGGTC
48383663 TGTGGTGTACATCGATGCATCCTACACTGG
1 TGTGGTGTACATCGATGCATCCTACACTGG
48383693 CCTTGGATGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (32 bp):
TGTGGTGTACATCGATGCATCCTACACTGGTC
Found at i:48386122 original size:21 final size:20
Alignment explanation
Indices: 48386098--48386145 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
48386088 ATTTAGCCCA
* *
48386098 TTTTTCTAATTACAATTGAAT
1 TTTTTCTAACTA-AACTGAAT
* *
48386119 TTTTGCAAACTAAACTGAAT
1 TTTTTCTAACTAAACTGAAT
48386139 TTTTTCT
1 TTTTTCT
48386146 TTCTTTTCTC
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.50
Consensus pattern (20 bp):
TTTTTCTAACTAAACTGAAT
Found at i:48387145 original size:39 final size:38
Alignment explanation
Indices: 48387075--48387167 Score: 98
Period size: 39 Copynumber: 2.4 Consensus size: 38
48387065 ATTACATTTT
* * *
48387075 AAACATGCCTACTATTACTGATGAACTGAATACATGATA
1 AAACATGCCTACTGTTACTGATAAACCGAATACATG-TA
* *
48387114 AAACATGCCTACTGTTATTG-TCAAACCGAATACATGTT
1 AAACATGCCTACTGTTACTGAT-AAACCGAATACATGTA
* *
48387152 AAGCATGTCTACTGTT
1 AAACATGCCTACTGTT
48387168 TTCTATACTT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
38 16 0.35
39 30 0.65
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.31
Consensus pattern (38 bp):
AAACATGCCTACTGTTACTGATAAACCGAATACATGTA
Found at i:48387408 original size:91 final size:91
Alignment explanation
Indices: 48387246--48387460 Score: 267
Period size: 91 Copynumber: 2.4 Consensus size: 91
48387236 TACTGGCAGT
* * *
48387246 TTAACTA-CAAACACTAGTGGCTTATCCACACACTTACTGACAAATTTTATCTACAAACCCATTA
1 TTAACTAGCAAACACTGGTGGTTTATCCACAAACTTACTGACAAATTTTATCTACAAACCCATTA
*
48387310 TGCATTCACAACCTACTGGCAGCGTA
66 TGCATTCACAACCTACTGGCAACGTA
* ** * * *
48387336 TTAACCT-GCAAACACTGGTGGTTTATCCATAAACTTACTAGA-AGCTTTTATTTGCAAACCCGT
1 TTAA-CTAGCAAACACTGGTGGTTTATCCACAAACTTACT-GACAAATTTTATCTACAAACCCAT
* *
48387399 TGTGCATTCACAACCTAGTGGCAACGTA
64 TATGCATTCACAACCTACTGGCAACGTA
*
48387427 TTAACTAGC-AACACTGGTGGTTCATCCACAAACT
1 TTAACTAGCAAACACTGGTGGTTTATCCACAAACT
48387461 GGAGTGTCCG
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
90 29 0.27
91 76 0.71
92 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (91 bp):
TTAACTAGCAAACACTGGTGGTTTATCCACAAACTTACTGACAAATTTTATCTACAAACCCATTA
TGCATTCACAACCTACTGGCAACGTA
Found at i:48390488 original size:27 final size:26
Alignment explanation
Indices: 48390445--48390578 Score: 126
Period size: 27 Copynumber: 5.0 Consensus size: 26
48390435 CATGTTGGAC
**
48390445 CGAAATACCCCCATAGGGTAAAATGA
1 CGAAATACCCCTGTAGGGTAAAATGA
48390471 TCGAAATACCCCTGTAGGGTAAAATGA
1 -CGAAATACCCCTGTAGGGTAAAATGA
* *
48390498 CCAAAATA-CCCTGATAGGGTCAAATGA
1 -CGAAATACCCCTG-TAGGGTAAAATGA
* * *
48390525 CTGTAATACCCCTATAGGGTAGAATGA
1 C-GAAATACCCCTGTAGGGTAAAATGA
* * *
48390552 CTATAATACCCCTGTAAGATAAAATGA
1 CGA-AATACCCCTGTAGGGTAAAATGA
48390579 TTGATTTGCC
Statistics
Matches: 87, Mismatches: 16, Indels: 8
0.78 0.14 0.07
Matches are distributed among these distances:
26 6 0.07
27 77 0.89
28 4 0.05
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.22
Consensus pattern (26 bp):
CGAAATACCCCTGTAGGGTAAAATGA
Found at i:48390533 original size:54 final size:54
Alignment explanation
Indices: 48390442--48390563 Score: 147
Period size: 54 Copynumber: 2.3 Consensus size: 54
48390432 GGCCATGTTG
* *
48390442 GACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTGTAGGGTAAAAT
1 GACCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGTAAAAT
** * * *
48390496 GACCAAAATACCCTGATAGGGTCAAATGA-CTGTAATACCCCTATAGGGTAGAAT
1 GACCAAAATACCCCCATAGGGTAAAATGATC-GAAATACCCCTATAGGGTAAAAT
* *
48390550 GACTATAATACCCC
1 GACCAAAATACCCC
48390564 TGTAAGATAA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.02
54 56 0.98
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (54 bp):
GACCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGTAAAAT
Found at i:48390767 original size:36 final size:36
Alignment explanation
Indices: 48390727--48390795 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
48390717 ACTGATATGG
48390727 TTGCACGGGTCACCCAAGACGACTGTGGACCTAAGA
1 TTGCACGGGTCACCCAAGACGACTGTGGACCTAAGA
48390763 TTGCACGGGTCACCCAAGACGACTGTGGACCTA
1 TTGCACGGGTCACCCAAGACGACTGTGGACCTA
48390796 CGGATGGCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.26, C:0.29, G:0.28, T:0.17
Consensus pattern (36 bp):
TTGCACGGGTCACCCAAGACGACTGTGGACCTAAGA
Found at i:48398363 original size:15 final size:16
Alignment explanation
Indices: 48398343--48398376 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
48398333 AAAATTAAAT
48398343 AAACTAA-CTAAATGC
1 AAACTAACCTAAATGC
*
48398358 AAACTAACCTAAATTC
1 AAACTAACCTAAATGC
48398374 AAA
1 AAA
48398377 TGAGATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.56, C:0.21, G:0.03, T:0.21
Consensus pattern (16 bp):
AAACTAACCTAAATGC
Found at i:48401057 original size:26 final size:26
Alignment explanation
Indices: 48401028--48401161 Score: 223
Period size: 26 Copynumber: 5.2 Consensus size: 26
48401018 TGGTACAAAT
*
48401028 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
48401054 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
48401080 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
48401106 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
48401132 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
48401158 TGAT
1 TGAT
48401162 GGGCATTTCA
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:48407815 original size:26 final size:26
Alignment explanation
Indices: 48407786--48407888 Score: 144
Period size: 26 Copynumber: 4.2 Consensus size: 26
48407776 TGGTACAAAT
48407786 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
48407812 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
48407838 TGATAAT--G---GGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
48407859 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
48407885 TGAT
1 TGAT
48407889 GGGCATTTCA
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
21 19 0.28
26 48 0.72
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:48407850 original size:47 final size:47
Alignment explanation
Indices: 48407799--48407888 Score: 162
Period size: 47 Copynumber: 1.9 Consensus size: 47
48407789 TAATGGGTTA
48407799 GGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATG
1 GGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATG
* *
48407846 GGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCATGAT
1 GGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGAT
48407889 GGGCATTTCA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (47 bp):
GGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCATGATAATG
Found at i:48407851 original size:21 final size:21
Alignment explanation
Indices: 48407825--48407867 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
48407815 TAATGGATTA
48407825 GGTAAATATTCCATGATAATG
1 GGTAAATATTCCATGATAATG
*
48407846 GGTAAATGTTCCATGATAATG
1 GGTAAATATTCCATGATAATG
48407867 G
1 G
48407868 TTTAGGTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.09, G:0.23, T:0.33
Consensus pattern (21 bp):
GGTAAATATTCCATGATAATG
Found at i:48411562 original size:47 final size:47
Alignment explanation
Indices: 48411462--48411839 Score: 605
Period size: 47 Copynumber: 7.9 Consensus size: 47
48411452 TAGTATGGCG
*
48411462 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
48411511 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
48411558 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
48411606 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
48411653 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
48411702 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
48411749 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
48411796 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
48411840 TCCCGAAGGG
Statistics
Matches: 311, Mismatches: 13, Indels: 12
0.93 0.04 0.04
Matches are distributed among these distances:
46 12 0.04
47 178 0.57
48 34 0.11
49 87 0.28
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:48411765 original size:96 final size:96
Alignment explanation
Indices: 48411462--48411839 Score: 645
Period size: 96 Copynumber: 4.0 Consensus size: 96
48411452 TAGTATGGCG
*
48411462 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
48411527 GAATGTGAAAGTGTATATATGTGATAAGGCC
66 GAATGTGAAAGTGTATATATGTGATAAGGCC
48411558 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
48411622 GAATGTGAAAGTGTATATATGTGATAAGGCC
66 GAATGTGAAAGTGTATATATGTGATAAGGCC
*
48411653 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
48411718 GAATGTGAAAGTGTATATATGTGATAAGGCC
66 GAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
48411749 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
48411812 GGATGTGAAAGTGTATAAATGTGATAAG
66 GAATGTGAAAGTGTATATATGTGATAAG
48411840 TCCCGAAGGG
Statistics
Matches: 270, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
94 53 0.20
95 94 0.35
96 123 0.46
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:48412014 original size:37 final size:37
Alignment explanation
Indices: 48411958--48412036 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
48411948 CCGAGCTCTA
* *
48411958 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
48411995 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
48412032 AAGAC
1 AAGAC
48412037 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:48423232 original size:46 final size:46
Alignment explanation
Indices: 48423162--48423290 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
48423152 TGTAACCCGC
* * * * *
48423162 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCAT
48423208 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCAT
48423254 CCATAAGTGAACTCGGA-TTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTT-AACTCAACGAGTTCGGA
48423291 TGCCCAAATA
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
45 2 0.03
46 75 0.97
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCAT
Found at i:48432026 original size:26 final size:26
Alignment explanation
Indices: 48431990--48432099 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
48431980 TGATACAAAT
48431990 TGATAATAGGTTAGGTAAATG-TTCTA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
48432016 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
48432042 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
48432068 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
48432094 TGATAA
1 TGATAA
48432100 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:48435224 original size:35 final size:34
Alignment explanation
Indices: 48435132--48435230 Score: 120
Period size: 29 Copynumber: 3.0 Consensus size: 34
48435122 GGAATGTTGG
*
48435132 GGGTCTATACCTAACATTGAGATTTCTACTTGTAT
1 GGGTCTGTA-CTAACATTGAGATTTCTACTTGTAT
48435167 GGGT-TG--C-AAGC--TGAGATTTCTACTTGTAT
1 GGGTCTGTACTAA-CATTGAGATTTCTACTTGTAT
48435196 GGGTCTGTACTTAACATTGAGATTTCTACTTGTAT
1 GGGTCTGTAC-TAACATTGAGATTTCTACTTGTAT
48435231 AGGTATCAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 16
0.76 0.01 0.22
Matches are distributed among these distances:
29 22 0.40
30 4 0.07
31 2 0.04
32 1 0.02
33 1 0.02
34 3 0.05
35 22 0.40
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.40
Consensus pattern (34 bp):
GGGTCTGTACTAACATTGAGATTTCTACTTGTAT
Found at i:48436504 original size:22 final size:22
Alignment explanation
Indices: 48436446--48436501 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
48436436 ACTAGATTGG
48436446 TATGCAATCTT---AGATATGA
1 TATGCAATCTTAGAAGATATGA
48436465 TATGCAATCTTAGAAGATATGA
1 TATGCAATCTTAGAAGATATGA
* *
48436487 TTTTGTAATCTTAGA
1 -TATGCAATCTTAGA
48436502 GATTTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 11 0.35
22 8 0.26
23 12 0.39
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
TATGCAATCTTAGAAGATATGA
Found at i:48442138 original size:11 final size:10
Alignment explanation
Indices: 48442122--48442167 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
48442112 TTCTATTTCA
48442122 AAAAAAAGAG
1 AAAAAAAGAG
* *
48442132 GAAAAAAGAA
1 AAAAAAAGAG
48442142 AAGAAAAAGAG
1 AA-AAAAAGAG
*
48442153 AAAAAAAAAG
1 AAAAAAAGAG
48442163 AAAAA
1 AAAAA
48442168 GAAAAAATGG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 21 0.70
11 9 0.30
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAG
Found at i:48442148 original size:23 final size:24
Alignment explanation
Indices: 48442122--48442174 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
48442112 TTCTATTTCA
**
48442122 AAAAAAAGAGGAAAAAAG-AAAAG
1 AAAAAAAGAAAAAAAAAGAAAAAG
*
48442145 AAAAAGAGAAAAAAAAAGAAAAAG
1 AAAAAAAGAAAAAAAAAGAAAAAG
48442169 AAAAAA
1 AAAAAA
48442175 TGGAGAGGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (24 bp):
AAAAAAAGAAAAAAAAAGAAAAAG
Found at i:48442149 original size:6 final size:6
Alignment explanation
Indices: 48442134--48442173 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
48442124 AAAAAGAGGA
48442134 AAAAAG -AAAAG AAAAAG AGAAAA- AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG A-AAAAG AAAAAG AAAAAG AAAAA
48442174 ATGGAGAGGC
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 9 0.29
6 18 0.58
7 4 0.13
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:48442156 original size:18 final size:17
Alignment explanation
Indices: 48442132--48442174 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 17
48442122 AAAAAAAGAG
48442132 GAAAAAAGAAAAGAAAAA
1 GAAAAAA-AAAAGAAAAA
48442150 GAGAAAAAAAAAGAAAAA
1 GA-AAAAAAAAAGAAAAA
48442168 GAAAAAA
1 GAAAAAA
48442175 TGGAGAGGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.21
18 14 0.58
19 5 0.21
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (17 bp):
GAAAAAAAAAAGAAAAA
Found at i:48443179 original size:43 final size:43
Alignment explanation
Indices: 48443124--48443355 Score: 159
Period size: 43 Copynumber: 5.5 Consensus size: 43
48443114 AAATTCAGTG
*
48443124 TCTTAATCCCCTAAGCAGTAGGGTAATAGGTTAAATTTGCAGA
1 TCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
* * *
48443167 TCTT-ATCTCCCTAAGCAGTAGTGG-AGA-AGATCGAAGA-CT-C-G-
1 TCTTAATC-CCCTAAGCAGTAG-GGTA-ACAGGT-TAA-ATTTGCAGA
* *
48443208 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGA
1 TCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
* * * *
48443251 TCTT-ATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C--A
1 TCTTAATC-CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGA
* * *
48443292 CCTTAATCCCCTAAGCGGTAAGGTAACAGGTTAAATTTGCAGA
1 TCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
48443335 TCTT-ATCTCCCTAAGCAGTAG
1 TCTTAATC-CCCTAAGCAGTAG
48443356 TGGAGTAGAT
Statistics
Matches: 142, Mismatches: 24, Indels: 46
0.67 0.11 0.22
Matches are distributed among these distances:
39 2 0.01
40 11 0.08
41 41 0.29
42 17 0.12
43 58 0.41
44 11 0.08
45 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (43 bp):
TCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA
Found at i:48443228 original size:41 final size:41
Alignment explanation
Indices: 48443175--48443396 Score: 127
Period size: 41 Copynumber: 5.3 Consensus size: 41
48443165 GATCTTATCT
48443175 CCCTAAGCAGTAGTGGAGAAGATCGAAGACTCGCCTTAATC
1 CCCTAAGCAGTAGTGGAGAAGATCGAAGACTCGCCTTAATC
* ** *** * *
48443216 CCCTAAGCAGTAG-GGTA-ACAGGTTAAATTTGTAGATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGA-AGATCGAA-GACTCG-CCTTAATC
* *
48443258 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCACCTTAATC
1 -CCCTAAGCAGTAGTGGAGAAGATCGAAGACTCGCCTTAATC
* * * * * *
48443300 CCCTAAGCGGTAAG-GTA-ACAGGT-TAA-ATTTGCAGATCTT-ATC
1 CCCTAAGCAGT-AGTGGAGA-AGATCGAAGA-CT-C-G-CCTTAATC
*
48443342 TCCCTAAGCAGTAGTGGAGTAGATCGAAGACTCGCCTTAATC
1 -CCCTAAGCAGTAGTGGAGAAGATCGAAGACTCGCCTTAATC
48443384 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
48443397 AGTAACAGGT
Statistics
Matches: 128, Mismatches: 33, Indels: 40
0.64 0.16 0.20
Matches are distributed among these distances:
39 1 0.01
40 6 0.05
41 54 0.42
42 20 0.16
43 41 0.32
44 5 0.04
45 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.24
Consensus pattern (41 bp):
CCCTAAGCAGTAGTGGAGAAGATCGAAGACTCGCCTTAATC
Found at i:48443266 original size:84 final size:84
Alignment explanation
Indices: 48443125--48443650 Score: 751
Period size: 84 Copynumber: 6.3 Consensus size: 84
48443115 AATTCAGTGT
*
48443125 CTTAATCCCCTAAGCAGTAGGGTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
48443190 GAGAAGATCGAAGACTCGC
66 GAGCAGATCGAAGACTCGC
*
48443209 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTAGTG
1 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
48443274 GAGCAGATCGAAGACTCAC
66 GAGCAGATCGAAGACTCGC
* *
48443293 CTTAATCCCCTAAGCGGTAAGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
48443358 GAGTAGATCGAAGACTCGC
66 GAGCAGATCGAAGACTCGC
* * * *
48443377 CTTAATCCCCTAAGCAGTAGAGTAACAGGTT-CA----CAGATCTTATCTCCCTAAGCAATAGCG
1 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
48443437 GAGCAGATCGACGACGACTCGC
66 GAGCAGATCGA--A-GACTCGC
*
48443459 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTAGTG
1 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
* *
48443524 GAGTAGATCGAAGACCCGC
66 GAGCAGATCGAAGACTCGC
* * * * **
48443543 CTTAATCCCTTAAGTAGTAGGGTAACAGGTTAAATTTACAGATCTTA--TCCTTAAGCAGTAGCA
1 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
48443606 GAGCAGATCGAAGACGATGCAC
66 GAGCAGATCGAAGAC--T-CGC
*
48443628 CTTAACCCCCTAAGCAGTAGGGT
1 CTTAATCCCCTAAGCAGTAGGGT
48443651 CCAAGATGAT
Statistics
Matches: 395, Mismatches: 36, Indels: 21
0.87 0.08 0.05
Matches are distributed among these distances:
79 35 0.09
81 1 0.00
82 64 0.16
83 2 0.01
84 236 0.60
85 23 0.06
87 34 0.09
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (84 bp):
CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTG
GAGCAGATCGAAGACTCGC
Found at i:48443931 original size:134 final size:133
Alignment explanation
Indices: 48443792--48444113 Score: 441
Period size: 134 Copynumber: 2.4 Consensus size: 133
48443782 GATCCAAAAT
* *
48443792 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGGCATAGCAGATCTAATATTCCTGTGCT
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTAACATTCCTGTGCT
* * * *
48443857 TACAGCGAAGCAGATCAAAGATTTTAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
66 TACAACGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAATCGAAGA-
*
48443922 AGCA
130 AACA
* *
48443926 GATTTGGCATCCTTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCT
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTAACATTCCTGTGCT
* * *
48443991 TCCAACGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAATCGAAGAA
66 TACAACGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAATCGAAGAA
*
48444056 ATA
131 ACA
* ** *
48444059 GATTTGGCATCTCCATAT-TCGAC-GGAGAGCAGATCGAAGACATAGCAGATCTAAC
1 GATTTGGCATC-CC-TGTGTTTACAGG-GAACAGATCGAAGACATAGCAGATCTAAC
48444114 CTTCGGATGT
Statistics
Matches: 166, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
133 15 0.09
134 149 0.90
135 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (133 bp):
GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTAACATTCCTGTGCT
TACAACGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAATCGAAGAA
ACA
Found at i:48443964 original size:44 final size:44
Alignment explanation
Indices: 48443792--48444069 Score: 188
Period size: 44 Copynumber: 6.2 Consensus size: 44
48443782 GATCCAAAAT
48443792 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGGCATAGCA
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAA-G-ATAGCA
* *** * * * * ***
48443838 GATCTAATATTCCTGTGCTTACAGCGAAGCAGATCAAAGATTTTA
1 GATTTGGCATCCCTGTGTTTACAGGGAA-CAGATCGAAGATAGCA
** * *
48443883 -ACATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCA
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGA-TCGAAGATAGCA
*
48443926 GATTTGGCATCCTTGTGTTTACAGGGAACAGATCGAAGACATAGCA
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAG--ATAGCA
* * * * * ** **
48443972 GATCTGACATTCCTGTGCTTCCAACGAAGCAGATCGAAGATTTCA
1 GATTTGGCATCCCTGTGTTTACAGGGAA-CAGATCGAAGATAGCA
* * **
48444017 GCA--TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGA-AATA
1 G-ATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGATAGCA
48444059 GATTTGGCATC
1 GATTTGGCATC
48444070 TCCATATTCG
Statistics
Matches: 171, Mismatches: 51, Indels: 23
0.70 0.21 0.09
Matches are distributed among these distances:
41 1 0.01
42 3 0.02
43 26 0.15
44 65 0.38
45 9 0.05
46 49 0.29
47 18 0.11
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
GATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGATAGCA
Found at i:48444157 original size:223 final size:220
Alignment explanation
Indices: 48443926--48444337 Score: 515
Period size: 220 Copynumber: 1.9 Consensus size: 220
48443916 GAAGATAGCA
** * * *
48443926 GATTTGGCATCCTTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGAC-ATTCCTGTGC
1 GATTTGGCATCCTTGCATTGACAAGGAACAGATCGAAGACATAGCAGATCTGACTATTAC-GTGC
* * * * *
48443990 TTCCAAC-GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGT-GTTTATAGGGAACAAATCGAA
65 TTAC-ACTGAAGCAGATCGAAGA--TCA-CATGGCATCCCTGTACTGT-CAGAGAACAAATCGAA
* *
48444053 GAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTC
125 GAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTC
48444118 GGATGTTTTCACATCGAAGTAGATCCAAGAT
190 GGATGTTTTCACATCGAAGTAGATCCAAGAT
* * * * *
48444149 GATTTGGCATCCTTGCATTGACAAGGAGCAGATCGAAGACATAGCAGATTTGCCTTTTACGTGTT
1 GATTTGGCATCCTTGCATTGACAAGGAACAGATCGAAGACATAGCAGATCTGACTATTACGTGCT
* * * ** *
48444214 TACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAACA
66 TACACTGAAGCAGATCGAAGATCACATGGCATCCCTGTACTGTCAGAGAACAAATCGAAGAAACA
* * *
48444279 GATTTGGCATCTCCATATTCAACGGAGAGTAGATCGAAGACATAGTAGATCTGACCTTC
131 GATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTC
48444338 ATTGAAGCAG
Statistics
Matches: 160, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
220 85 0.53
221 4 0.03
222 1 0.01
223 67 0.42
224 3 0.02
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (220 bp):
GATTTGGCATCCTTGCATTGACAAGGAACAGATCGAAGACATAGCAGATCTGACTATTACGTGCT
TACACTGAAGCAGATCGAAGATCACATGGCATCCCTGTACTGTCAGAGAACAAATCGAAGAAACA
GATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
TTTCACATCGAAGTAGATCCAAGAT
Found at i:48444214 original size:89 final size:87
Alignment explanation
Indices: 48444085--48444246 Score: 204
Period size: 89 Copynumber: 1.8 Consensus size: 87
48444075 ATTCGACGGA
* *
48444085 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTACAC-T-GAAGCAGATCCAAGATG
48444150 ATTTGGCATCCTTGCATTGACAAG
64 ATTTGGCATCCTTGCATTGACAAG
** * *
48444174 GAGCAGATCGAAGACATAGCAGAT-TTGCCTTTTAC-G-TGTTTACGCTGAAGCAGATCTAAGAT
1 GAGCAGATCGAAGACATAGCAGATCTAACC--TT-CGGATGTTTACACTGAAGCAGATCCAAGAT
48444236 GATTTGGCATC
63 GATTTGGCATC
48444247 TCTGTACTGT
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
87 25 0.39
88 4 0.06
89 31 0.48
90 3 0.05
91 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCCTTGCATTGACAAG
Found at i:48444408 original size:78 final size:78
Alignment explanation
Indices: 48444279--48444716 Score: 625
Period size: 78 Copynumber: 5.6 Consensus size: 78
48444269 CGAAGAAACA
* * * **
48444279 GATTTGGCATCTCCATATTCA-ACGGAGAGTAGATCGAAGACATAGTAGATCTGACCTTCATTGA
1 GATTTGGCATCTCTATATT-AGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGA
48444343 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * * * *
48444357 GATTTGGCATCTCTGTATTAGACGAGGAGCAGATCGAAGAAACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
*
48444422 GCAGATCAAAGAT
66 GCAGATCCAAGAT
* * * *
48444435 GATTTGGCATATCTGTATTAGACGGGGAGTAGATCGAAGACATAATAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTGA
48444499 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
48444513 GATTTGGCATCTCTATATTATACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
48444578 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
48444591 GATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTGA
48444655 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
48444669 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATC--AGAGATAACAGAT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAACAGAT
48444717 TTGGCATCTC
Statistics
Matches: 326, Mismatches: 30, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
76 12 0.04
77 3 0.01
78 310 0.95
79 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:48444733 original size:45 final size:45
Alignment explanation
Indices: 48444669--48444837 Score: 234
Period size: 45 Copynumber: 3.8 Consensus size: 45
48444659 GATCCAAGAT
*
48444669 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATC-AGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGA-AGATAACA
* *
48444714 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
48444758 GATTTCGCGTCTCTATATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
48444803 GATTTGGCGTCTCTGTATTAGACGAGGAGTAGATC
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATC
48444838 AAATATAGCA
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
44 39 0.35
45 70 0.64
46 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:48444820 original size:89 final size:89
Alignment explanation
Indices: 48444669--48444836 Score: 257
Period size: 89 Copynumber: 1.9 Consensus size: 89
48444659 GATCCAAGAT
* *
48444669 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAGATAACAGATTTGGCATCTCTGTATTA
1 GATTTCGCATCTCTATATTAGACGGGGAGCAAATCAGAGATAACAGATTTGGCATCTCTGTATTA
*
48444734 GACGGGGAGCAGATTGAAGAAGCA
66 GACGAGGAGCAGATTGAAGAAGCA
* * *
48444758 GATTTCGCGTCTCTATATTAGACGGGGAGCAGATC-GAAGATAACAGATTTGGCGTCTCTGTATT
1 GATTTCGCATCTCTATATTAGACGGGGAGCAAATCAG-AGATAACAGATTTGGCATCTCTGTATT
*
48444822 AGACGAGGAGTAGAT
65 AGACGAGGAGCAGAT
48444837 CAAATATAGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
88 1 0.01
89 70 0.99
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (89 bp):
GATTTCGCATCTCTATATTAGACGGGGAGCAAATCAGAGATAACAGATTTGGCATCTCTGTATTA
GACGAGGAGCAGATTGAAGAAGCA
Found at i:48445221 original size:19 final size:19
Alignment explanation
Indices: 48445197--48445288 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
48445187 ATAATCTTCA
*
48445197 ATGATATGCAACCTTAGAT
1 ATGATATGCAATCTTAGAT
48445216 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
48445235 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
48445254 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
48445271 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
48445289 AGATATGATT
Statistics
Matches: 70, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
17 17 0.24
19 53 0.76
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:48445229 original size:36 final size:38
Alignment explanation
Indices: 48445197--48445295 Score: 161
Period size: 36 Copynumber: 2.7 Consensus size: 38
48445187 ATAATCTTCA
*
48445197 ATGATATGCAACCTTAGATATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
48445235 ATGATATGCAATCTTAGATATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
48445271 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATATGCAATCTTAGATATGATATG
48445296 ATTTTGTAAT
Statistics
Matches: 58, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
34 4 0.07
35 1 0.02
36 29 0.50
38 24 0.41
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (38 bp):
ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:48445314 original size:22 final size:22
Alignment explanation
Indices: 48445197--48445311 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
48445187 ATAATCTTCA
*
48445197 ATGATATGCAACCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
48445216 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
48445235 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
48445254 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
48445271 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
48445293 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
48445312 GATTTAATTT
Statistics
Matches: 87, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
17 17 0.20
19 50 0.57
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:48446728 original size:12 final size:12
Alignment explanation
Indices: 48446713--48446738 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
48446703 CAAAACTCGA
48446713 TTTAAAAATGGT
1 TTTAAAAATGGT
48446725 TTTAAAAATGGT
1 TTTAAAAATGGT
48446737 TT
1 TT
48446739 CGACAACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (12 bp):
TTTAAAAATGGT
Found at i:48447163 original size:5 final size:5
Alignment explanation
Indices: 48447153--48447184 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
48447143 TTAGATAAAC
48447153 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA AT
1 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA AT
48447185 GATTGTAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (5 bp):
ATCTA
Found at i:48447290 original size:20 final size:19
Alignment explanation
Indices: 48447261--48447300 Score: 71
Period size: 20 Copynumber: 2.1 Consensus size: 19
48447251 CTTCCTGTGC
48447261 TAAATGATCAAGAAAATAA
1 TAAATGATCAAGAAAATAA
48447280 TAAAGTGATCAAGAAAATAA
1 TAAA-TGATCAAGAAAATAA
48447300 T
1 T
48447301 CTATTTACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.60, C:0.05, G:0.12, T:0.23
Consensus pattern (19 bp):
TAAATGATCAAGAAAATAA
Found at i:48449948 original size:32 final size:32
Alignment explanation
Indices: 48449907--48449970 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
48449897 TATAACTATA
48449907 CTACTTTTTTATATGTAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
48449939 CTACTTTTTTATATGTAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
48449971 ATTTTTTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.47
Consensus pattern (32 bp):
CTACTTTTTTATATGTAAAACTAATGTATGAT
Found at i:48454429 original size:21 final size:21
Alignment explanation
Indices: 48454405--48454454 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
48454395 CATTGTTTCT
*
48454405 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
48454426 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
48454447 AATCTCAC
1 AATCTCAC
48454455 AGCCACCGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.36, G:0.08, T:0.24
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:48456153 original size:21 final size:22
Alignment explanation
Indices: 48456094--48456157 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 22
48456084 CATAAGCAGT
* * *
48456094 ATACGACACATAAAATGTCTGA
1 ATACGACACATATAGTGCCTGA
** *
48456116 A-ACGACACACGTGGTGCCT-A
1 ATACGACACATATAGTGCCTGA
48456136 ATACGACACATATAGTGCCTGA
1 ATACGACACATATAGTGCCTGA
48456158 TGACGAAGCT
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
20 2 0.06
21 27 0.87
22 2 0.06
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (22 bp):
ATACGACACATATAGTGCCTGA
Found at i:48456660 original size:17 final size:18
Alignment explanation
Indices: 48456638--48456672 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
48456628 TAATCCTAAT
*
48456638 TAACTC-ATTTACTTTTC
1 TAACTCAATTCACTTTTC
48456655 TAACTCAATTCACTTTTC
1 TAACTCAATTCACTTTTC
48456673 ATTTCTACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.49
Consensus pattern (18 bp):
TAACTCAATTCACTTTTC
Found at i:48457415 original size:9 final size:9
Alignment explanation
Indices: 48457397--48457467 Score: 84
Period size: 9 Copynumber: 8.6 Consensus size: 9
48457387 AATTTATTCC
48457397 ATAA-TATA
1 ATAATTATA
48457405 ATAATTATA
1 ATAATTATA
48457414 ATAATTATA
1 ATAATTATA
48457423 ATAATTATA
1 ATAATTATA
48457432 ATAA-TATA
1 ATAATTATA
48457440 A-ACA--ATA
1 ATA-ATTATA
48457447 ATAA-T-TA
1 ATAATTATA
48457454 ATAATTATA
1 ATAATTATA
48457463 ATAAT
1 ATAAT
48457468 AAATATCTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 11
0.84 0.00 0.16
Matches are distributed among these distances:
7 12 0.21
8 12 0.21
9 33 0.58
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (9 bp):
ATAATTATA
Found at i:48457417 original size:3 final size:3
Alignment explanation
Indices: 48457397--48457469 Score: 69
Period size: 3 Copynumber: 24.3 Consensus size: 3
48457387 AATTTATTCC
* * *
48457397 ATA AT- ATA ATA ATT ATA ATA ATT ATA ATA ATT ATA ATA AT- ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* *
48457441 ACA ATA ATA ATTA ATA ATT ATA ATA ATA A
1 ATA ATA ATA A-TA ATA ATA ATA ATA ATA A
48457470 ATATCTATTT
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
2 4 0.07
3 48 0.86
4 4 0.07
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:48457424 original size:18 final size:17
Alignment explanation
Indices: 48457397--48457472 Score: 99
Period size: 18 Copynumber: 4.6 Consensus size: 17
48457387 AATTTATTCC
48457397 ATAATATAATAATTATA
1 ATAATATAATAATTATA
48457414 ATAATTATAATAATTATA
1 ATAA-TATAATAATTATA
48457432 ATAATATAA-ACA--ATA
1 ATAATATAATA-ATTATA
48457447 ATAAT-TAATAATTATA
1 ATAATATAATAATTATA
48457463 ATAATA-AATA
1 ATAATATAATA
48457473 TCTATTTAAT
Statistics
Matches: 53, Mismatches: 0, Indels: 13
0.80 0.00 0.20
Matches are distributed among these distances:
14 4 0.08
15 9 0.17
16 13 0.25
17 10 0.19
18 17 0.32
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAATATAATAATTATA
Done.