Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 157 of 250
Found at i:50496126 original size:22 final size:22
Alignment explanation
Indices: 50496087--50496128 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
50496077 GTGAGATGAC
*
50496087 AGCAAAACAATGATAAAACAGT
1 AGCAAAACAATGAGAAAACAGT
*
50496109 AGCAAAACAATGGGAAAACA
1 AGCAAAACAATGAGAAAACA
50496129 AGAATATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.14, G:0.17, T:0.10
Consensus pattern (22 bp):
AGCAAAACAATGAGAAAACAGT
Found at i:50502317 original size:21 final size:21
Alignment explanation
Indices: 50502292--50502449 Score: 178
Period size: 21 Copynumber: 7.6 Consensus size: 21
50502282 CATATTTTAC
* *
50502292 TTTCTGTTTAGCTCTTACGAG
1 TTTCTGTTCAACTCTTACGAG
* *
50502313 CTTCTGTTCAACTCTTATGAG
1 TTTCTGTTCAACTCTTACGAG
50502334 TTTCTGTT-AAGCTCTTACGAG
1 TTTCTGTTCAA-CTCTTACGAG
*
50502355 TTTCTGTTCAACTCTTATGAG
1 TTTCTGTTCAACTCTTACGAG
* *
50502376 TTTCTTTTCAGCTCTTACGAG
1 TTTCTGTTCAACTCTTACGAG
*
50502397 CTTCTGTTCAACTCTTA--AG
1 TTTCTGTTCAACTCTTACGAG
* **
50502416 TTTTTGTTCAACTCTTATAAG
1 TTTCTGTTCAACTCTTACGAG
*
50502437 CTTCTGTTCAACT
1 TTTCTGTTCAACT
50502450 TTCAAGCTTC
Statistics
Matches: 116, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
19 17 0.15
20 2 0.02
21 95 0.82
22 2 0.02
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.46
Consensus pattern (21 bp):
TTTCTGTTCAACTCTTACGAG
Found at i:50502340 original size:42 final size:42
Alignment explanation
Indices: 50502292--50502449 Score: 223
Period size: 42 Copynumber: 3.8 Consensus size: 42
50502282 CATATTTTAC
50502292 TTTCTGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
1 TTTCTGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
* *
50502334 TTTCTGTTAAGCTCTTACGAGTTTCTGTTCAACTCTTATGAG
1 TTTCTGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
50502376 TTTCT-TTTCAGCTCTTACGAGCTTCTGTTCAACTCTTA--AG
1 TTTCTGTTT-AGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
* * * **
50502416 TTTTTGTTCAACTCTTATAAGCTTCTGTTCAACT
1 TTTCTGTTTAGCTCTTACGAGCTTCTGTTCAACT
50502450 TTCAAGCTTC
Statistics
Matches: 105, Mismatches: 9, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
40 28 0.27
41 4 0.04
42 73 0.70
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.46
Consensus pattern (42 bp):
TTTCTGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
Found at i:50502402 original size:63 final size:61
Alignment explanation
Indices: 50502292--50502463 Score: 197
Period size: 63 Copynumber: 2.8 Consensus size: 61
50502282 CATATTTTAC
* * * * *
50502292 TTTCTGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAGTTTCTGTT-AAGCTCTTACGAG
1 TTTCTGTTCAACTCTTATGAGCTTCTGTTCAACTCTTACGAGCTTCTGTTCAA-CTCTTA--AG
* * *
50502355 TTTCTGTTCAACTCTTATGAGTTTCTTTTCAGCTCTTACGAGCTTCTGTTCAACTCTTAAG
1 TTTCTGTTCAACTCTTATGAGCTTCTGTTCAACTCTTACGAGCTTCTGTTCAACTCTTAAG
* * *
50502416 TTTTTGTTCAACTCTTATAAGCTTCTGTTCAACT-TT-CAAGCTTCTGTT
1 TTTCTGTTCAACTCTTATGAGCTTCTGTTCAACTCTTACGAGCTTCTGTT
50502464 GTCATATCTG
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
59 11 0.12
60 2 0.02
61 31 0.33
63 48 0.51
64 2 0.02
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.47
Consensus pattern (61 bp):
TTTCTGTTCAACTCTTATGAGCTTCTGTTCAACTCTTACGAGCTTCTGTTCAACTCTTAAG
Found at i:50511833 original size:13 final size:13
Alignment explanation
Indices: 50511793--50511833 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
50511783 TTTAATGAAA
50511793 TATT-TTATTATTT
1 TATTATTATTA-TT
50511806 TATTATTATTATT
1 TATTATTATTATT
*
50511819 TATTATTTTTATT
1 TATTATTATTATT
50511832 TA
1 TA
50511834 GTATAAAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 20 0.77
14 6 0.23
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TATTATTATTATT
Found at i:50513116 original size:51 final size:51
Alignment explanation
Indices: 50513040--50513147 Score: 216
Period size: 51 Copynumber: 2.1 Consensus size: 51
50513030 AAGTTATCCA
50513040 GATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAATTCTG
1 GATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAATTCTG
50513091 GATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAATTCTG
1 GATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAATTCTG
50513142 GATGAA
1 GATGAA
50513148 GTACGAAGTA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (51 bp):
GATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAATTCTG
Found at i:50514056 original size:46 final size:46
Alignment explanation
Indices: 50513989--50514193 Score: 295
Period size: 46 Copynumber: 4.5 Consensus size: 46
50513979 GCTTTTTGAA
*
50513989 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGACAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAT
* * *
50514035 ATGAATTGTGTAAGACCATGGTTGAATGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAT
* *
50514081 ATGAAATATGTAAGACCATGGTTGAAAGATAACATGGA-AACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCAT-GACAACATGAT
* * *
50514127 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAT
**
50514173 ATGAAATGAATAAGACCATGG
1 ATGAAATGTGTAAGACCATGG
50514194 CAACATGACA
Statistics
Matches: 141, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 139 0.99
47 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.24
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAT
Found at i:50514191 original size:30 final size:30
Alignment explanation
Indices: 50514157--50514221 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
50514147 GTTGAAAGAT
*
50514157 ACCATGGCAACGTGACATG-AAATGAATAAG
1 ACCATGGCAACATGACA-GAAAATGAATAAG
*
50514187 ACCATGGCAACATGACAGAAAATGAGTAAG
1 ACCATGGCAACATGACAGAAAATGAATAAG
50514217 ACCAT
1 ACCAT
50514222 AGTTGAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 1 0.03
30 31 0.97
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (30 bp):
ACCATGGCAACATGACAGAAAATGAATAAG
Found at i:50515720 original size:26 final size:26
Alignment explanation
Indices: 50515691--50515798 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
50515681 TGGTACAAAT
50515691 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
50515717 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
50515743 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
50515769 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
50515795 TGAT
1 TGAT
50515799 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:50520504 original size:13 final size:13
Alignment explanation
Indices: 50520482--50520514 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
50520472 AAGGGTTTGT
50520482 TTAT-TAAACTAA
1 TTATCTAAACTAA
50520494 TTATCTAAACTAA
1 TTATCTAAACTAA
*
50520507 TTAACTAA
1 TTATCTAA
50520515 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:50523454 original size:5 final size:5
Alignment explanation
Indices: 50523431--50523487 Score: 55
Period size: 5 Copynumber: 11.4 Consensus size: 5
50523421 AAATTAAGAT
* * *
50523431 AATAA AATTGA AATGAA AATAA AA-AT AATAA AATAA AATAA AATAA AA-AG
1 AATAA AA-TAA AAT-AA AATAA AATAA AATAA AATAA AATAA AATAA AATAA
50523481 AATAA AA
1 AATAA AA
50523488 AGATAGGAGG
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
4 6 0.14
5 28 0.67
6 8 0.19
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:50523470 original size:19 final size:18
Alignment explanation
Indices: 50523441--50523487 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 18
50523431 AATAAAATTG
*
50523441 AAATGAAAATAAAAATAATA
1 AAAT-AAAAT-AAAATAAAA
50523461 AAATAAAATAAAATAAAA
1 AAATAAAATAAAATAAAA
50523479 AGAATAAAA
1 A-AATAAAA
50523488 AGATAGGAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 9 0.36
19 12 0.48
20 4 0.16
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (18 bp):
AAATAAAATAAAATAAAA
Found at i:50523478 original size:24 final size:26
Alignment explanation
Indices: 50523429--50523487 Score: 86
Period size: 24 Copynumber: 2.3 Consensus size: 26
50523419 TCAAATTAAG
*
50523429 ATAATAAAATTGAAATGAAAATAAAA
1 ATAATAAAATTAAAATGAAAATAAAA
50523455 ATAATAAAA-TAAAAT-AAAATAAAA
1 ATAATAAAATTAAAATGAAAATAAAA
*
50523479 AGAATAAAA
1 ATAATAAAA
50523488 AGATAGGAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 17 0.55
25 5 0.16
26 9 0.29
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (26 bp):
ATAATAAAATTAAAATGAAAATAAAA
Found at i:50523488 original size:15 final size:15
Alignment explanation
Indices: 50523431--50523487 Score: 55
Period size: 14 Copynumber: 3.8 Consensus size: 15
50523421 AAATTAAGAT
*
50523431 AATAAAATTGAAATGAA
1 AATAAAA-TAAAAT-AA
*
50523448 AATAAAA-ATAATAA
1 AATAAAATAAAATAA
50523462 AATAAAATAAAATAA
1 AATAAAATAAAATAA
*
50523477 AA-AGAATAAAA
1 AATAAAATAAAA
50523488 AGATAGGAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 17 0.49
15 11 0.31
17 7 0.20
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.19
Consensus pattern (15 bp):
AATAAAATAAAATAA
Found at i:50528868 original size:13 final size:13
Alignment explanation
Indices: 50528846--50528878 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
50528836 AAGGGTTTGT
50528846 TTAT-TAAACTAA
1 TTATCTAAACTAA
50528858 TTATCTAAACTAA
1 TTATCTAAACTAA
*
50528871 TTAACTAA
1 TTATCTAA
50528879 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:50538897 original size:21 final size:20
Alignment explanation
Indices: 50538872--50538975 Score: 81
Period size: 21 Copynumber: 5.2 Consensus size: 20
50538862 TAGCCTTCGG
50538872 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCAC-TATGT
* ** *
50538893 GCTTCAG-TTAGC-CTCCGG
1 GCTTCCGTTTAGCACTATGT
50538911 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCAC-TATGT
* ** *
50538932 GCTTCAG-TTAGC-CTCCGG
1 GCTTCCGTTTAGCACTATGT
50538950 GCTTCCGTTTAGCACGTATGT
1 GCTTCCGTTTAGCAC-TATGT
50538971 GCTTC
1 GCTTC
50538976 AGCTAGATTT
Statistics
Matches: 61, Mismatches: 16, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
18 16 0.26
19 12 0.20
20 12 0.20
21 21 0.34
ACGTcount: A:0.12, C:0.28, G:0.23, T:0.37
Consensus pattern (20 bp):
GCTTCCGTTTAGCACTATGT
Found at i:50538993 original size:39 final size:39
Alignment explanation
Indices: 50538854--50538977 Score: 221
Period size: 39 Copynumber: 3.2 Consensus size: 39
50538844 GCTCTGATGA
* *
50538854 GCTTTAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
50538893 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
*
50538932 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACGTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
50538971 GCTTCAG
1 GCTTCAG
50538978 CTAGATTTCG
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.13, C:0.27, G:0.24, T:0.36
Consensus pattern (39 bp):
GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
Found at i:50540339 original size:31 final size:31
Alignment explanation
Indices: 50540301--50540491 Score: 127
Period size: 31 Copynumber: 5.8 Consensus size: 31
50540291 ACAAATGACA
*
50540301 AGTGAAAAGTAGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
50540332 AGTGAAAAGTGGTAGCTCCGGCTACCTGAT-
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
50540362 AGATAAAAAAATGGTCGC-TCTGGCTACCTGATC
1 AG-T-GAAAAGTGGTAGCTTC-GGCTACCTGATC
* *
50540395 AGTGAATAGTGAAAAGTGGTGGCTCCGGCTACCTGAT-
1 -------AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
50540432 AGATAAAAAAAAATGGTAGCTCCGACTACCTGATC
1 AG-T---GAAAAGTGGTAGCTTCGGCTACCTGATC
*
50540467 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
50540492 AAGTGACAAG
Statistics
Matches: 124, Mismatches: 19, Indels: 34
0.70 0.11 0.19
Matches are distributed among these distances:
30 4 0.03
31 48 0.39
32 21 0.17
34 24 0.19
35 2 0.02
38 21 0.17
39 2 0.02
40 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:50540392 original size:32 final size:33
Alignment explanation
Indices: 50540312--50540469 Score: 137
Period size: 38 Copynumber: 4.7 Consensus size: 33
50540302 GTGAAAAGTA
* * *
50540312 GTAGCTTCGGCTACCTGATCAGT--GAAAAGTG
1 GTAGCTCCGGCTACCTGATCAGTAAAAAAAATG
50540343 GTAGCTCCGGCTACCTGAT-AG-ATAAAAAAATG
1 GTAGCTCCGGCTACCTGATCAGTA-AAAAAAATG
* * *
50540375 GTCGCTCTGGCTACCTGATCAGTGAATAGTGAAAAGTG
1 GTAGCTCCGGCTACCTGATCAGT-AA-A---AAAAATG
*
50540413 GTGGCTCCGGCTACCTGAT-AGATAAAAAAAAATG
1 GTAGCTCCGGCTACCTGATCAG-T-AAAAAAAATG
*
50540447 GTAGCTCCGACTACCTGATCAGT
1 GTAGCTCCGGCTACCTGATCAGT
50540470 GAATAGTGGT
Statistics
Matches: 103, Mismatches: 12, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
30 2 0.02
31 18 0.17
32 23 0.22
33 2 0.02
34 25 0.24
35 4 0.04
37 3 0.03
38 26 0.25
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.24
Consensus pattern (33 bp):
GTAGCTCCGGCTACCTGATCAGTAAAAAAAATG
Found at i:50542012 original size:17 final size:17
Alignment explanation
Indices: 50541990--50542030 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
50541980 AAAAAGGACT
50541990 AAATTGTATCAAATGCA
1 AAATTGTATCAAATGCA
50542007 AAATTGTATCAAATGCA
1 AAATTGTATCAAATGCA
50542024 AAATTGT
1 AAATTGT
50542031 GGGAAATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.32
Consensus pattern (17 bp):
AAATTGTATCAAATGCA
Found at i:50543898 original size:21 final size:21
Alignment explanation
Indices: 50543873--50543937 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
50543863 TAGCCTTCGG
50543873 GCTTCCGTTTAGCGCTTATGT
1 GCTTCCGTTTAGCGCTTATGT
* ** *
50543894 GCTTCAG-TTAGC-C-TCCGG
1 GCTTCCGTTTAGCGCTTATGT
50543912 GCTTCCGTTTAGCGCTTATGT
1 GCTTCCGTTTAGCGCTTATGT
50543933 GCTTC
1 GCTTC
50543938 AGTTAGCCTC
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 8 0.24
19 6 0.18
20 6 0.18
21 13 0.39
ACGTcount: A:0.09, C:0.28, G:0.25, T:0.38
Consensus pattern (21 bp):
GCTTCCGTTTAGCGCTTATGT
Found at i:50543994 original size:39 final size:39
Alignment explanation
Indices: 50543855--50543978 Score: 212
Period size: 39 Copynumber: 3.2 Consensus size: 39
50543845 GCTCTGATGA
*
50543855 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCGCTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCGCTTATGT
50543894 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCGCTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCGCTTATGT
* **
50543933 GCTTCAGTTAGCCTCCGGGCTTCTGTTTAGAACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCGCTTATGT
50543972 GCTTCAG
1 GCTTCAG
50543979 CTAGATTTCG
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.12, C:0.26, G:0.25, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCGCTTATGT
Found at i:50579994 original size:24 final size:24
Alignment explanation
Indices: 50579960--50580006 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
50579950 ATTAATTGTA
* *
50579960 AAAAAATTATATACTGGATCCAAT
1 AAAAAACTATATACCGGATCCAAT
50579984 AAAAAACTATATACCGGATCCAA
1 AAAAAACTATATACCGGATCCAA
50580007 GATTTTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.09, T:0.23
Consensus pattern (24 bp):
AAAAAACTATATACCGGATCCAAT
Found at i:50580463 original size:27 final size:27
Alignment explanation
Indices: 50580410--50580466 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
50580400 AAAACAATTA
** *
50580410 AGTGGAGGGTGTCAGGTAGATGACACC
1 AGTGGAGGGTGTCAAATAGACGACACC
* *
50580437 AGTGGAGGGTGTCAAATAGGCGGCACC
1 AGTGGAGGGTGTCAAATAGACGACACC
50580464 AGT
1 AGT
50580467 TGTGCCTATC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.16, G:0.40, T:0.18
Consensus pattern (27 bp):
AGTGGAGGGTGTCAAATAGACGACACC
Found at i:50580726 original size:25 final size:24
Alignment explanation
Indices: 50580680--50580726 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
50580670 TTTGTTTAGT
* *
50580680 GTTATTTTTATATTCTGTTTTAAA
1 GTTATTTTTATATTATGATTTAAA
*
50580704 GTTATTTTGTTTATTATGATTTA
1 GTTATTTT-TATATTATGATTTA
50580727 TTAGTAAGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.23, C:0.02, G:0.11, T:0.64
Consensus pattern (24 bp):
GTTATTTTTATATTATGATTTAAA
Found at i:50580814 original size:27 final size:27
Alignment explanation
Indices: 50580779--50580830 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
50580769 AAAATTTTTT
* *
50580779 AATATATTTGATATTATTAGAAATAAC
1 AATAAATTTAATATTATTAGAAATAAC
*
50580806 AATAAATTTAATATTGTTAGAAATA
1 AATAAATTTAATATTATTAGAAATA
50580831 GACTATTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (27 bp):
AATAAATTTAATATTATTAGAAATAAC
Found at i:50583716 original size:64 final size:64
Alignment explanation
Indices: 50583618--50583774 Score: 271
Period size: 64 Copynumber: 2.5 Consensus size: 64
50583608 TGAGCTTATG
* *
50583618 TAATTTATATAAAA-AAATTATATTACAAAATTTGTTCCAATTAGATTATGGTTGTAATGTATT
1 TAATTTATATAAAATAATTTATATTACAAAATTTGTTCCAATTAGATTATGGTTGTAATGAATT
*
50583681 TAATTTATATAAAATAATTTATATTACAAACTTTGTTCCAATTAGATTATGGTTGTAATGAATT
1 TAATTTATATAAAATAATTTATATTACAAAATTTGTTCCAATTAGATTATGGTTGTAATGAATT
*
50583745 TAATTTATATAACATAATTTATATTACAAA
1 TAATTTATATAAAATAATTTATATTACAAA
50583775 GCTAAGTTTG
Statistics
Matches: 89, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
63 14 0.16
64 75 0.84
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.45
Consensus pattern (64 bp):
TAATTTATATAAAATAATTTATATTACAAAATTTGTTCCAATTAGATTATGGTTGTAATGAATT
Found at i:50584217 original size:33 final size:33
Alignment explanation
Indices: 50584180--50584243 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
50584170 GGCCGAGTGG
* *
50584180 AGTGCTGTACTGTGGTGGATATGAGCTGGGAGA
1 AGTGCTATACTATGGTGGATATGAGCTGGGAGA
*
50584213 AGTGCTATACTATGGTGGATATGGGCTGGGA
1 AGTGCTATACTATGGTGGATATGAGCTGGGA
50584244 AATAGTCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.22, C:0.09, G:0.41, T:0.28
Consensus pattern (33 bp):
AGTGCTATACTATGGTGGATATGAGCTGGGAGA
Found at i:50586275 original size:107 final size:112
Alignment explanation
Indices: 50586098--50586315 Score: 320
Period size: 107 Copynumber: 2.0 Consensus size: 112
50586088 CCACATTAAA
*
50586098 ATATTAAAATACTAAAAATAATATGCCAATAAAAAAATAAAAAACATAACATAAACGATACATAA
1 ATATTAAAATACTAAAAATAACATGCCAAT----AAATAAAAAACATAACATAAACGATACATAA
* *
50586163 TAAATATG-A-ATTTTT-TTATTATTTTAAAATGATAATAAGTAAATTTTT
62 TAAATACGAATATTTTTATTATTACTTTAAAATGATAATAAGTAAATTTTT
* *
50586211 ATATTAAAATACTAAAAATAACATGCCAAT-AA-CAAAAACATAACTTAAACGATACATAATAAA
1 ATATTAAAATACTAAAAATAACATGCCAATAAATAAAAAACATAACATAAACGATACATAATAAA
50586274 TACGAATATTTTTATTATTACTTTAAAATGATAATAAGTAAA
66 TACGAATATTTTTATTATTACTTTAAAATGATAATAAGTAAA
50586316 CATTTTTGGT
Statistics
Matches: 97, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
107 32 0.33
108 3 0.03
109 6 0.06
110 27 0.28
113 29 0.30
ACGTcount: A:0.55, C:0.08, G:0.05, T:0.33
Consensus pattern (112 bp):
ATATTAAAATACTAAAAATAACATGCCAATAAATAAAAAACATAACATAAACGATACATAATAAA
TACGAATATTTTTATTATTACTTTAAAATGATAATAAGTAAATTTTT
Found at i:50586992 original size:20 final size:20
Alignment explanation
Indices: 50586954--50586993 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
50586944 TGCCCTCCCA
*
50586954 TTCTCCTTCTTCTTTTTCTC
1 TTCTCCTTCTCCTTTTTCTC
50586974 TTCTCCTTC-CCTTTCTTCTC
1 TTCTCCTTCTCCTTT-TTCTC
50586994 CTTCACCCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (20 bp):
TTCTCCTTCTCCTTTTTCTC
Found at i:50587702 original size:20 final size:20
Alignment explanation
Indices: 50587661--50587715 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
50587651 GTTTAGGGTT
*
50587661 TTTTTTATA-TTTTTAAGTA
1 TTTTTTATATTTTTTAAGAA
50587680 TTTTTATATATTTTTTAA-AA
1 TTTTT-TATATTTTTTAAGAA
50587700 TTTTTTATAATTTTTT
1 TTTTTTAT-ATTTTTT
50587716 GAGTTGTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
19 8 0.25
20 17 0.53
21 7 0.22
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTTTTATATTTTTTAAGAA
Found at i:50588261 original size:14 final size:16
Alignment explanation
Indices: 50588236--50588268 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
50588226 TTTTTGGTCA
50588236 TTTCTATCTTTTTC-T
1 TTTCTATCTTTTTCAT
50588251 TTTCT-TCTTTTTCAT
1 TTTCTATCTTTTTCAT
50588266 TTT
1 TTT
50588269 GATTATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTCTATCTTTTTCAT
Found at i:50600303 original size:9 final size:9
Alignment explanation
Indices: 50600284--50600317 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
50600274 TGAGTTTTCG
*
50600284 AATTTGAAT
1 AATTCGAAT
*
50600293 AACTCGAAT
1 AATTCGAAT
50600302 AATTCGAAT
1 AATTCGAAT
50600311 AATTCGA
1 AATTCGA
50600318 CTATCAAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:50604334 original size:27 final size:27
Alignment explanation
Indices: 50604296--50604350 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
50604286 CCAACCTATA
50604296 CCATGACATGTTTCTTACTCCTTAAAT
1 CCATGACATGTTTCTTACTCCTTAAAT
50604323 CCATGACATGTTTCTTACTCCTTAAAT
1 CCATGACATGTTTCTTACTCCTTAAAT
50604350 C
1 C
50604351 TCTATGTGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.27, G:0.07, T:0.40
Consensus pattern (27 bp):
CCATGACATGTTTCTTACTCCTTAAAT
Found at i:50605168 original size:116 final size:117
Alignment explanation
Indices: 50604963--50605197 Score: 427
Period size: 116 Copynumber: 2.0 Consensus size: 117
50604953 AGGAGTGCTT
50604963 ATAAACTACTACAGGAGGCTAATTCGGGTCCTTAGTGATAATTTTTTACAGGCCAAGACTAGAGA
1 ATAAACTACTACAGGAGGCTAATTCGGGTCCTTAGTGATAATTTTTTACAGGCCAAGACTAGAGA
50605028 TTTCTGTAGGAAATTATGGAATATACATCTCCCTTCAAAAATTAAATTAACA
66 TTTCTGTAGGAAATTATGGAATATACATCTCCCTTCAAAAATTAAATTAACA
* * **
50605080 ATAAACTACTACAGGAGGCTAATTTGGGTCC-TAGTGATAATTTTTTATAGGCGGAGACTAGAGA
1 ATAAACTACTACAGGAGGCTAATTCGGGTCCTTAGTGATAATTTTTTACAGGCCAAGACTAGAGA
50605144 TTTCTGTAGGAAATTATGGAATATACATCTCCCTTCAAAAATTAAATTAACA
66 TTTCTGTAGGAAATTATGGAATATACATCTCCCTTCAAAAATTAAATTAACA
50605196 AT
1 AT
50605198 TTGGAGAATT
Statistics
Matches: 114, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
116 84 0.74
117 30 0.26
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (117 bp):
ATAAACTACTACAGGAGGCTAATTCGGGTCCTTAGTGATAATTTTTTACAGGCCAAGACTAGAGA
TTTCTGTAGGAAATTATGGAATATACATCTCCCTTCAAAAATTAAATTAACA
Found at i:50607716 original size:30 final size:30
Alignment explanation
Indices: 50607682--50607740 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
50607672 TGTTTTATTG
50607682 TTAATTTTGTTATTATTTTAGAAGCATTTC
1 TTAATTTTGTTATTATTTTAGAAGCATTTC
*
50607712 TTAATTTTGTTATTATTTTAGAGGCATTT
1 TTAATTTTGTTATTATTTTAGAAGCATTT
50607741 GTTTGTTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.05, G:0.12, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAGAAGCATTTC
Found at i:50615063 original size:19 final size:19
Alignment explanation
Indices: 50615036--50615072 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
50615026 ATAATATTCA
*
50615036 ATGATATGCAATCTTAGAT
1 ATGAAATGCAATCTTAGAT
50615055 ATGAAATGCAATCTTAGA
1 ATGAAATGCAATCTTAGA
50615073 AGATATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (19 bp):
ATGAAATGCAATCTTAGAT
Found at i:50620233 original size:7 final size:7
Alignment explanation
Indices: 50620216--50620264 Score: 64
Period size: 7 Copynumber: 6.9 Consensus size: 7
50620206 TCTATTTCGA
50620216 AAAAAAGG
1 AAAAAA-G
50620224 AAAAAAG
1 AAAAAAG
*
50620231 AAAAGA-
1 AAAAAAG
50620237 AAAAAAG
1 AAAAAAG
50620244 AAAAAAAG
1 -AAAAAAG
50620252 AAAAAAG
1 AAAAAAG
50620259 AAAAAA
1 AAAAAA
50620265 TGGAGAGGCC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
6 5 0.14
7 19 0.51
8 13 0.35
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:50620240 original size:21 final size:21
Alignment explanation
Indices: 50620214--50620264 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
50620204 CTTCTATTTC
*
50620214 GAAAAAAAGGAAAAAAGAAAA
1 GAAAAAAAGAAAAAAAGAAAA
50620235 GAAAAAAAGAAAAAAAGAAAA
1 GAAAAAAAGAAAAAAAGAAAA
*
50620256 AAGAAAAAA
1 GA-AAAAAA
50620265 TGGAGAGGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (21 bp):
GAAAAAAAGAAAAAAAGAAAA
Found at i:50621293 original size:44 final size:43
Alignment explanation
Indices: 50621234--50621796 Score: 280
Period size: 44 Copynumber: 12.9 Consensus size: 43
50621224 GATCCAAGAT
* *
50621234 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGAT-ACA
**
50621278 GATTTGGCATCTCTGTATTGGCAAAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGAT-ACA
* * * *
50621322 GATTTGGTATCTCTGTATTGGCAGGAAGCAGATCAAAGACATAACT
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAG--AT-ACA
* * * * * * *
50621368 GATTTAGC-TTTACGTGT-TT-ACATTGAAGCAAATCCAAGAT---
1 GATTTGGCATCT-C-TGTATTGGCA-GGGAGCAGATCGAAGATACA
** * *
50621408 GATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGATA-CA
* * *
50621452 GATTTGGCATCTTTGTATTGGCAGAGAGCAGATCGAAGACAGCA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGATA-CA
* * * *
50621496 GATTTGGCGTCTCTATATTGGCAGGGAGCAGATCGAGGTCATAGCT
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAG--ATA-CA
* * * * * *
50621542 GATTTGGCTTTCACGTGT-TT-AC-GTTGAAGCAAATCTAAGAT---
1 GATTTGGC-ATCTC-TGTATTGGCAG--GGAGCAGATCGAAGATACA
* * * *
50621583 GATTTGGCGTCTCTGTATTGGTAGGGAGCAGATCGAAGACATGGCT
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAG--AT-ACA
* * * * * *
50621629 GATTTGGCTTTCACGTGT-TT-AC-GTTGAAGCAAATCTAAGAT---
1 GATTTGGC-ATCTC-TGTATTGGCAG--GGAGCAGATCGAAGATACA
* * * * * *
50621670 GATTTGACATCTCTGTATTGGCAGAGAGCAAATTGAAGACAGA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGATACA
* * ** *
50621713 TGATTTGGCGTCTCTGTATTGTCAATGAGCAGATCGAATATACCA
1 -GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGATA-CA
*
50621758 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGA
1 GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGA
50621797 CATAGCTTTC
Statistics
Matches: 396, Mismatches: 84, Indels: 78
0.71 0.15 0.14
Matches are distributed among these distances:
39 9 0.02
40 53 0.13
41 20 0.05
42 4 0.01
44 213 0.54
45 11 0.03
46 47 0.12
47 34 0.09
48 5 0.01
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (43 bp):
GATTTGGCATCTCTGTATTGGCAGGGAGCAGATCGAAGATACA
Found at i:50621602 original size:87 final size:86
Alignment explanation
Indices: 50621217--50621973 Score: 624
Period size: 87 Copynumber: 8.8 Consensus size: 86
50621207 GTATTTACAC
* * * *
50621217 TGAAGCAGATCCAAGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAG-AT-GACAGA
1 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGCATAG-CTGA
* * * *
50621280 TTTGGC-ATCTC-TGTATT-GGC
65 TTTGGCTTTCACGTGT-TTACGT
** * * ** * *
50621300 AAAGAGCAGATCGAAGATAACAGATTTGGTATCTCTGTATTGGCAGGAAGCAGATCAAAGACATA
1 TGA-AGCAAATCTAAGAT----GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAG-CATA
* * *
50621365 ACTGATTTAGCTTT-ACGTGTTTACAT
60 GCTGATTTGGCTTTCACGTGTTTACGT
* * * * *
50621391 TGAAGCAAATCCAAGATGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAG-ATAGCAGAT
1 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGCATAGCTGAT
* ** * *
50621455 TTGGC-ATC-TTTGTATT-GGC
66 TTGGCTTTCACGTGT-TTACGT
* * * * * *
50621474 AGAGAGCAGATCGAAGACAGCAGATTTGGCGTCTCTATATTGGCAGGGAGCAGATCGAGGTCATA
1 TGA-AGCAAATCTAAG--A--TGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAG-CATA
50621539 GCTGATTTGGCTTTCACGTGTTTACGT
60 GCTGATTTGGCTTTCACGTGTTTACGT
* *
50621566 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGTAGGGAGCAGATCGAAGACATGGCTGA
1 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAG-CATAGCTGA
50621631 TTTGGCTTTCACGTGTTTACGT
65 TTTGGCTTTCACGTGTTTACGT
* * * * * * *
50621653 TGAAGCAAATCTAAGATGATTTGACATCTCTGTATTGGCAGAGAGCAAATTGAAG-ACAGATGAT
1 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGCATAGCTGAT
* * * **
50621717 TTGGC-GTCTC-TGTATTGTCAA
66 TTGGCTTTCACGTGT-TT-ACGT
* * *
50621738 TG-AGCAGATCGAATATACCAGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAG---A-C
1 TGAAGCAAATCTAAGAT----GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGCATAGC
*
50621798 --A--TAGCTTTCACGTGTTTACGT
62 TGATTTGGCTTTCACGTGTTTACGT
50621819 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGA
1 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAG-CATAGCTGA
50621884 TTTGGCTTTCACGTGTTTACGT
65 TTTGGCTTTCACGTGTTTACGT
* * * * *
50621906 TGAAACAAATCTAAGATGATTTGGCGTCTCTATATTGGCAGAGAGCAGATCGAAG-ACAGATGAT
1 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGCATAGCTGAT
50621970 TTGG
66 TTGG
50621974 TATCTTTGTA
Statistics
Matches: 537, Mismatches: 96, Indels: 80
0.75 0.13 0.11
Matches are distributed among these distances:
78 38 0.07
81 6 0.01
82 17 0.03
83 15 0.03
84 52 0.10
85 26 0.05
86 35 0.07
87 185 0.34
88 99 0.18
89 1 0.00
90 38 0.07
91 19 0.04
92 6 0.01
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (86 bp):
TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGCATAGCTGAT
TTGGCTTTCACGTGTTTACGT
Found at i:50621917 original size:253 final size:257
Alignment explanation
Indices: 50621322--50622028 Score: 980
Period size: 253 Copynumber: 2.8 Consensus size: 257
50621312 GAAGATAACA
** * * * *
50621322 GATTTGGTATCTCTGTATTGGCAGGAAGCAGATCAAAGACATAACTGATTTAGCTTT-ACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
* * * * *
50621386 TACATTGAAGCAAATCCAAGATGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGC
66 TACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGACAG-
* *
50621451 A-GATTTGGCATCTTTGTATTGGCAGAGAGCAGATCGAAGACAGCAGATTTGGCGTCTCTATATT
130 ATGATTTGGCATCTTTGTATTGTCAGAGAGCAGATCGAAGACACCAGATTTGGCGTCTCTATATT
* *
50621515 GGCAGGGAGCAGATCGAGGTCATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAA
195 GGCAGGGAGCAGATCGA-G--AGAGC-GA-TTAGCTTTCACGTGTTTACGTTGAAGCAAATCTAA
50621580 GAT
255 GAT
* *
50621583 GATTTGGCGTCTCTGTATTGGTAGGGAGCAGATCGAAGACATGGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
* * * *
50621648 TACGTTGAAGCAAATCTAAGATGATTTGACATCTCTGTATTGGCAGAGAGCAAATTGAAGACAGA
66 TACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGACAGA
* * * * *
50621713 TGATTTGGCGTCTCTGTATTGTCA-ATGAGCAGATCGAATATACCAGATTTGGCGTCTCTGTATT
131 TGATTTGGCATCTTTGTATTGTCAGA-GAGCAGATCGAAGACACCAGATTTGGCGTCTCTATATT
50621777 GGCAGGGAGCAGATCGA-AGA-C-A-TAGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
195 GGCAGGGAGCAGATCGAGAGAGCGATTAGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
50621836 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
* *
50621901 TACGTTGAAACAAATCTAAGATGATTTGGCGTCTCTATATTGGCAGAGAGCAGATCGAAGACAGA
66 TACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGACAGA
* * * * * * *
50621966 TGATTTGGTATCTTTGTATTGTCAGAGAACAAATTGAAGA-AACAGATTTGGCATCTCCATATT
131 TGATTTGGCATCTTTGTATTGTCAGAGAGCAGATCGAAGACACCAGATTTGGCGTCTCTATATT
50622029 CAACGGAGAG
Statistics
Matches: 397, Mismatches: 45, Indels: 17
0.86 0.10 0.04
Matches are distributed among these distances:
252 19 0.05
253 189 0.48
254 1 0.00
255 1 0.00
257 1 0.00
258 2 0.01
261 51 0.13
262 133 0.34
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (257 bp):
GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
TACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGACAGA
TGATTTGGCATCTTTGTATTGTCAGAGAGCAGATCGAAGACACCAGATTTGGCGTCTCTATATTG
GCAGGGAGCAGATCGAGAGAGCGATTAGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGAT
Found at i:50622005 original size:44 final size:44
Alignment explanation
Indices: 50621919--50622028 Score: 114
Period size: 44 Copynumber: 2.5 Consensus size: 44
50621909 AACAAATCTA
* * *
50621919 AGATGATTTGGCGTCTCTATATTGGCAGAGAGCAGATCGAAGAC
1 AGATGATTTGGCATCTCTATATTGGCAGAGAACAAATCGAAGAC
* * * * * *
50621963 AGATGATTTGGTATCTTTGTATTGTCAGAGAACAAATTGAAGAA
1 AGATGATTTGGCATCTCTATATTGGCAGAGAACAAATCGAAGAC
* *
50622007 ACA-GATTTGGCATCTCCATATT
1 AGATGATTTGGCATCTCTATATT
50622029 CAACGGAGAG
Statistics
Matches: 52, Mismatches: 14, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
43 15 0.29
44 37 0.71
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (44 bp):
AGATGATTTGGCATCTCTATATTGGCAGAGAACAAATCGAAGAC
Found at i:50622240 original size:44 final size:43
Alignment explanation
Indices: 50622192--50622454 Score: 203
Period size: 44 Copynumber: 5.9 Consensus size: 43
50622182 GATTTTAACA
*
50622192 TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATT
1 TGGCATCCCTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGA-T
50622236 TGGCATCCCTGTGTTTACAGGGAACAGATTGAAGACATAGCAGAT
1 TGGCATCCCTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGAT
** * * * * **
50622281 CTGATATTCCTGTGCTTACAGCGAAACAGATCGAAGATTTCAGCA-
1 -TGGCATCCCTGTGTTTACAG-GGAACAGATTGAAGATAGCAG-AT
* * *
50622326 TGGCATCCATGTGTTTATAGGGAACAGATCGAAGACATAGCAGAT
1 TGGCATCCCTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGAT
* * * * **
50622371 CTGACATTCCTGTGCTTACAGCGAAGCAGATTGAAGATTTCAGCA-
1 -TGGCATCCCTGTGTTTACAGGGAA-CAGATTGAAGATAGCAG-AT
*
50622416 TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGA-AGCA
1 TGGCATCCCTGTGTTTACAGGGAACAGA-TTGAAGATAGCA
50622455 AGTTTGGCGT
Statistics
Matches: 172, Mismatches: 34, Indels: 28
0.74 0.15 0.12
Matches are distributed among these distances:
42 3 0.02
43 22 0.13
44 65 0.38
45 17 0.10
46 44 0.26
47 21 0.12
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (43 bp):
TGGCATCCCTGTGTTTACAGGGAACAGATTGAAGATAGCAGAT
Found at i:50622284 original size:134 final size:135
Alignment explanation
Indices: 50622098--50622407 Score: 399
Period size: 134 Copynumber: 2.3 Consensus size: 135
50622088 GATCCAAGAT
* * * * * *
50622098 GATTTGGCATTCTTGTGTTTACAAAGAGCAAATCGAAGACATATCAGATCTGACATTCCTGTGCT
1 GATTTGGCATTCCTGTGTTTACAGAGAACAGATTGAAGACATAGCAGATCTGACATTCCTGTGCT
** * * *
50622163 TACAGCGAGGCAGATCAAAGATTTTAACATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAG-
66 TACAGCGAAACAGATCAAAGATTTCAACATGGCATCCATGTGTTTATAGGGAACAGA-TCGAAGA
50622226 ATAGCA
130 ATAGCA
* * *
50622232 GATTTGGCATCCCTGTGTTTACAGGGAACAGATTGAAGACATAGCAGATCTGATATTCCTGTGCT
1 GATTTGGCATTCCTGTGTTTACAGAGAACAGATTGAAGACATAGCAGATCTGACATTCCTGTGCT
* *
50622297 TACAGCGAAACAGATCGAAGATTTCAGCATGGCATCCATGTGTTTATAGGGAACAGATCGAAGAC
66 TACAGCGAAACAGATCAAAGATTTCAACATGGCATCCATGTGTTTATAGGGAACAGATCGAAGA-
50622362 ATAGCA
130 ATAGCA
* * * *
50622368 GATCTGACATTCCTGTGCTTACAGCGAAGCAGATTGAAGA
1 GATTTGGCATTCCTGTGTTTACAGAGAA-CAGATTGAAGA
50622408 TTTCAGCATG
Statistics
Matches: 151, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
134 110 0.73
135 1 0.01
136 29 0.19
137 11 0.07
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (135 bp):
GATTTGGCATTCCTGTGTTTACAGAGAACAGATTGAAGACATAGCAGATCTGACATTCCTGTGCT
TACAGCGAAACAGATCAAAGATTTCAACATGGCATCCATGTGTTTATAGGGAACAGATCGAAGAA
TAGCA
Found at i:50622293 original size:46 final size:45
Alignment explanation
Indices: 50622199--50622407 Score: 178
Period size: 46 Copynumber: 4.6 Consensus size: 45
50622189 ACATGGCATC
* * * *
50622199 CCTGTGTTTATAGGGAACA-AGTTGAAG-ATAGCAGATTTGGCATC
1 CCTGTGTTTACAGGGAACAGA-TTGAAGAATAGCAGATCTGACATT
*
50622243 CCTGTGTTTACAGGGAACAGATTGAAGACATAGCAGATCTGATATT
1 CCTGTGTTTACAGGGAACAGATTGAAGA-ATAGCAGATCTGACATT
* * * ** *
50622289 CCTGTGCTTACAGCGAAACAGATCGAAG-ATTTCAG--CATGGCA-T
1 CCTGTGTTTACAG-GGAACAGATTGAAGAATAGCAGATC-TGACATT
* *
50622332 CCATGTGTTTATAGGGAACAGATCGAAGACATAGCAGATCTGACATT
1 CC-TGTGTTTACAGGGAACAGATTGAAGA-ATAGCAGATCTGACATT
* *
50622379 CCTGTGCTTACAGCGAAGCAGATTGAAGA
1 CCTGTGTTTACAGGGAA-CAGATTGAAGA
50622408 TTTCAGCATG
Statistics
Matches: 131, Mismatches: 22, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
43 17 0.13
44 36 0.27
45 11 0.08
46 41 0.31
47 26 0.20
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (45 bp):
CCTGTGTTTACAGGGAACAGATTGAAGAATAGCAGATCTGACATT
Found at i:50622293 original size:90 final size:90
Alignment explanation
Indices: 50622236--50622450 Score: 337
Period size: 90 Copynumber: 2.4 Consensus size: 90
50622226 ATAGCAGATT
* *
50622236 TGGCATCCCTGTGTTTACAGGGAACAGATTGAAGACATAGCAGATCTGATATTCCTGTGCTTACA
1 TGGCATCCCTGTGTTTATAGGGAACAGATTGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
*
50622301 GCGAA-ACAGATCGAAGATTTCAGCA
66 GCGAACA-AGATTGAAGATTTCAGCA
* *
50622326 TGGCATCCATGTGTTTATAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
1 TGGCATCCCTGTGTTTATAGGGAACAGATTGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
50622391 GCGAAGC-AGATTGAAGATTTCAGCA
66 GCGAA-CAAGATTGAAGATTTCAGCA
50622416 TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGA
1 TGGCATCCCTGTGTTTATAGGGAACAGA-TTGAAGA
50622451 AGCAAGTTTG
Statistics
Matches: 115, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
89 1 0.01
90 114 0.99
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (90 bp):
TGGCATCCCTGTGTTTATAGGGAACAGATTGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
GCGAACAAGATTGAAGATTTCAGCA
Found at i:50622923 original size:19 final size:19
Alignment explanation
Indices: 50622899--50622989 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
50622889 ATAATCTTCA
50622899 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
50622918 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
50622937 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
50622954 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
50622972 ATGAAATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
50622990 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.22
19 37 0.54
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:50622970 original size:35 final size:37
Alignment explanation
Indices: 50622907--50622996 Score: 134
Period size: 35 Copynumber: 2.5 Consensus size: 37
50622897 CAATGATATG
50622907 CAATCTTAGATATGATATGCAATCTTAGATATG-ATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGAATA
*
50622943 CAATCTTAGATATGAT-TGCAATCTTAGATATGAAATG
1 CAATCTTAGATATGATATGCAATCTTAGATATG-AATA
50622980 CAATCTTAGA-A-GATATG
1 CAATCTTAGATATGATATG
50622997 ATTTTGTAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
35 19 0.38
36 19 0.38
37 12 0.24
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGAATA
Found at i:50624998 original size:19 final size:19
Alignment explanation
Indices: 50624974--50625033 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
50624964 ACTTCATGCT
50624974 AATTTTTAATTTTTTTTTG
1 AATTTTTAATTTTTTTTTG
* * * *
50624993 AATTTTTTATATATTTTTA
1 AATTTTTAATTTTTTTTTG
*
50625012 ATATTTTTAAATTTTTTGTTG
1 A-ATTTTT-AATTTTTTTTTG
50625033 A
1 A
50625034 TATAACATAT
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
19 16 0.53
20 6 0.20
21 8 0.27
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (19 bp):
AATTTTTAATTTTTTTTTG
Found at i:50625025 original size:8 final size:9
Alignment explanation
Indices: 50624987--50625027 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
50624977 TTTTAATTTT
50624987 TTTTTGAAT-
1 TTTTT-AATA
50624996 TTTTTATATA
1 TTTTTA-ATA
50625006 TTTTTAATA
1 TTTTTAATA
50625015 TTTTTAA-A
1 TTTTTAATA
50625023 TTTTT
1 TTTTT
50625028 TGTTGATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 7 0.23
9 17 0.57
10 6 0.20
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (9 bp):
TTTTTAATA
Found at i:50627785 original size:18 final size:18
Alignment explanation
Indices: 50627764--50627806 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
50627754 AAATTGGAAA
50627764 GATAAA-AAAAATAAAGAT
1 GATAAATAAAAA-AAAGAT
*
50627782 GATAAATAATAAAAAGAT
1 GATAAATAAAAAAAAGAT
50627800 GA-AAATA
1 GATAAATA
50627807 TCATCATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 5 0.22
18 14 0.61
19 4 0.17
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.19
Consensus pattern (18 bp):
GATAAATAAAAAAAAGAT
Found at i:50631353 original size:18 final size:18
Alignment explanation
Indices: 50631322--50631357 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
50631312 GAAATTAAAC
50631322 TTAAGTTGAAAAAATAAT
1 TTAAGTTGAAAAAATAAT
50631340 TTAA-TTGAATAAAATAAT
1 TTAAGTTGAA-AAAATAAT
50631358 ATTTTGATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (18 bp):
TTAAGTTGAAAAAATAAT
Found at i:50632253 original size:17 final size:19
Alignment explanation
Indices: 50632214--50632256 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
50632204 TTGAATTTTT
**
50632214 TTTAAAAATAATTATATGT
1 TTTAAAAATAATTATATCA
50632233 TTTAAAAAT-A-TATATCA
1 TTTAAAAATAATTATATCA
50632250 TTTAAAA
1 TTTAAAA
50632257 TTTTTATAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 12 0.55
18 1 0.05
19 9 0.41
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
TTTAAAAATAATTATATCA
Found at i:50636365 original size:6 final size:6
Alignment explanation
Indices: 50636354--50636394 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
50636344 ATAATTTAAT
50636354 AAATAA AAATAAA AATATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAAT-AA AA-ATAA AAATAA AAATAA AAATAA AAA
50636395 ACATATAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 23 0.70
7 8 0.24
8 2 0.06
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:50636375 original size:14 final size:13
Alignment explanation
Indices: 50636354--50636395 Score: 68
Period size: 13 Copynumber: 3.2 Consensus size: 13
50636344 ATAATTTAAT
50636354 AAATAAAAATAAA
1 AAATAAAAATAAA
50636367 AATATAAAAAT-AA
1 AA-ATAAAAATAAA
50636380 AAATAAAAATAAA
1 AAATAAAAATAAA
50636393 AAA
1 AAA
50636396 CATATAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 8 0.30
13 11 0.41
14 8 0.30
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAATAAAAATAAA
Found at i:50636379 original size:20 final size:19
Alignment explanation
Indices: 50636354--50636395 Score: 75
Period size: 20 Copynumber: 2.2 Consensus size: 19
50636344 ATAATTTAAT
50636354 AAATAAAAATAAAAATATAA
1 AAATAAAAATAAAAATA-AA
50636374 AAATAAAAATAAAAATAAA
1 AAATAAAAATAAAAATAAA
50636393 AAA
1 AAA
50636396 CATATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (19 bp):
AAATAAAAATAAAAATAAA
Found at i:50636453 original size:9 final size:9
Alignment explanation
Indices: 50636441--50636472 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
50636431 GTAATTCGGG
50636441 TAATTCGAT
1 TAATTCGAT
*
50636450 TAATTCAAT
1 TAATTCGAT
50636459 TAATTCGAT
1 TAATTCGAT
50636468 TAATT
1 TAATT
50636473 TTATACTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (9 bp):
TAATTCGAT
Found at i:50645262 original size:6 final size:6
Alignment explanation
Indices: 50645246--50645289 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
50645236 ACAATGTTGG
* * *
50645246 AAATGA TAATGA CAATGA CAATGA AAATGA AAATGA AAATGA AA
1 AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA AA
50645290 GGTGCAGTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.61, C:0.05, G:0.16, T:0.18
Consensus pattern (6 bp):
AAATGA
Found at i:50656167 original size:44 final size:44
Alignment explanation
Indices: 50656112--50656356 Score: 239
Period size: 44 Copynumber: 5.6 Consensus size: 44
50656102 CAAAAGTTCA
* *
50656112 CGGCG-TTTTTTAGAAAAAACGCCGCCAAAGACCATGACCTTTAG
1 CGGCGCTTTTTTA-AAAAAACGCCGCTATAGACCATGACCTTTAG
* * * * ** * ** *
50656156 CGGC-ATTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTATAG
1 CGGCGCTTTTTTAAAAAAACGCCGCTATAGACCATGACCTTTAG
* * *
50656199 CAGCGCTTTTAT-AAAAAACGCCGCTATAGACCTAT-ACTTTTAG
1 CGGCGCTTTTTTAAAAAAACGCCGCTATAGACC-ATGACCTTTAG
* * *
50656242 CGGCGCTTTTGTAAAAAAACGCCGCTATAGACCAAGAACTTTAG
1 CGGCGCTTTTTTAAAAAAACGCCGCTATAGACCATGACCTTTAG
* *
50656286 CGGCGCTTTTGTAAAAAAACGCCGCTATAGACC-TGTACTTTTAG
1 CGGCGCTTTTTTAAAAAAACGCCGCTATAGACCATG-ACCTTTAG
*
50656330 CGGCGCTTTTTTGAAAAAACGCCGCTA
1 CGGCGCTTTTTTAAAAAAACGCCGCTA
50656357 ATTTGCCCAG
Statistics
Matches: 163, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
43 56 0.34
44 107 0.66
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (44 bp):
CGGCGCTTTTTTAAAAAAACGCCGCTATAGACCATGACCTTTAG
Found at i:50656325 original size:88 final size:87
Alignment explanation
Indices: 50656196--50656356 Score: 268
Period size: 88 Copynumber: 1.8 Consensus size: 87
50656186 TCTTGGTCTA
50656196 TAGCAGCGCTTTTATAAAAAACGCCGCTATAGACCTATACTTTTAGCGGCGCTTTTGTAAAAAAA
1 TAGCAGCGCTTTTATAAAAAACGCCGCTATAGACCTATACTTTTAGCGGCGCTTTTGTAAAAAAA
50656261 CGCCGCTATAGACCAAGAACTT
66 CGCCGCTATAGACCAAGAACTT
* * * * *
50656283 TAGCGGCGCTTTTGTAAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTTTGAAAAA
1 TAGCAGCGCTTTTAT-AAAAAACGCCGCTATAGACCTATACTTTTAGCGGCGCTTTTGTAAAAAA
50656348 ACGCCGCTA
65 ACGCCGCTA
50656357 ATTTGCCCAG
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
87 13 0.19
88 55 0.81
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (87 bp):
TAGCAGCGCTTTTATAAAAAACGCCGCTATAGACCTATACTTTTAGCGGCGCTTTTGTAAAAAAA
CGCCGCTATAGACCAAGAACTT
Found at i:50660479 original size:21 final size:21
Alignment explanation
Indices: 50660455--50660494 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
50660445 AAATTAATTC
*
50660455 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
50660476 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
50660495 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:50662797 original size:21 final size:20
Alignment explanation
Indices: 50662773--50662812 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
50662763 GTTGGATAGA
*
50662773 AACATGAAAATAGACCAAAAG
1 AACATCAAAATA-ACCAAAAG
*
50662794 AACATCTAAATAACCAAAA
1 AACATCAAAATAACCAAAA
50662813 TATAACAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.62, C:0.17, G:0.07, T:0.12
Consensus pattern (20 bp):
AACATCAAAATAACCAAAAG
Found at i:50662865 original size:133 final size:133
Alignment explanation
Indices: 50662561--50663079 Score: 975
Period size: 133 Copynumber: 3.9 Consensus size: 133
50662551 GAATTCAACA
50662561 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
50662626 TAAGTTGGATAGAAACATGAAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTT
66 TAAGTTGGATAGAAACATG-AAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTT
50662691 TATT
130 TATT
*
50662695 ATATAATACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
*
50662760 TAAGTTGGATAGAAACATGAAAATAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
50662825 ATT
131 ATT
50662828 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
*
50662893 TAAGTTGGATAGAAACATGAAAATAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
50662958 ATT
131 ATT
* * *
50662961 ATATAAAATGTGAGCAACAAGACAACAATAAACTATTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
50663026 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
50663080 GGAATCACCA
Statistics
Matches: 378, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
133 295 0.78
134 83 0.22
ACGTcount: A:0.52, C:0.18, G:0.10, T:0.21
Consensus pattern (133 bp):
ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
ATT
Found at i:50662930 original size:21 final size:20
Alignment explanation
Indices: 50662906--50662945 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
50662896 GTTGGATAGA
*
50662906 AACATGAAAATAGACCAAAAG
1 AACATCAAAATA-ACCAAAAG
*
50662927 AACATCTAAATAACCAAAA
1 AACATCAAAATAACCAAAA
50662946 TATAACAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.62, C:0.17, G:0.07, T:0.12
Consensus pattern (20 bp):
AACATCAAAATAACCAAAAG
Found at i:50665847 original size:10 final size:11
Alignment explanation
Indices: 50665830--50665876 Score: 58
Period size: 12 Copynumber: 4.0 Consensus size: 11
50665820 CCACTTTCCA
50665830 TATATATATATT
1 TATATATAT-TT
50665842 TATATATATTT
1 TATATATATTT
*
50665853 TAAAATAATATTT
1 T-ATAT-ATATTT
50665866 TATATATATTT
1 TATATATATTT
50665877 ATCTTATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 9 0.29
12 15 0.48
13 7 0.23
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
TATATATATTT
Found at i:50665885 original size:15 final size:15
Alignment explanation
Indices: 50665865--50665896 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
50665855 AAATAATATT
*
50665865 TTATATATATTTATC
1 TTATATACATTTATC
50665880 TTATATACATTTATC
1 TTATATACATTTATC
50665895 TT
1 TT
50665897 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:50666771 original size:14 final size:14
Alignment explanation
Indices: 50666752--50666784 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
50666742 TTAAACCTGT
50666752 TTAAACCATATAT-C
1 TTAAACCATA-ATCC
50666766 TTAAACCATAATCC
1 TTAAACCATAATCC
50666780 TTAAA
1 TTAAA
50666785 ATATAATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 2 0.11
14 16 0.89
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.33
Consensus pattern (14 bp):
TTAAACCATAATCC
Found at i:50667025 original size:42 final size:41
Alignment explanation
Indices: 50666947--50667069 Score: 151
Period size: 41 Copynumber: 3.0 Consensus size: 41
50666937 GGGTTATGGG
** *
50666947 GTTTTTAGCGGCG-TTTTACCTAAAGCGCCGCTAATGCTCT
1 GTTTTTAGCGGCGTTTTTTTCTAAAACGCCGCTAATGCTCT
*
50666987 AGTTTTTAGCGGCGTTTTTTTCTAAAACGCCGCTAATGCTAT
1 -GTTTTTAGCGGCGTTTTTTTCTAAAACGCCGCTAATGCTCT
* ** *
50667029 GTTTTTACCGGCGTTTTTTT-TGGAACGCCGCTATTGCTCT
1 GTTTTTAGCGGCGTTTTTTTCTAAAACGCCGCTAATGCTCT
50667069 G
1 G
50667070 AATTTTAAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
40 17 0.24
41 32 0.44
42 23 0.32
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (41 bp):
GTTTTTAGCGGCGTTTTTTTCTAAAACGCCGCTAATGCTCT
Found at i:50671712 original size:17 final size:18
Alignment explanation
Indices: 50671682--50671715 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
50671672 GATATGAGGA
50671682 AATTGAGAAATGATGATG
1 AATTGAGAAATGATGATG
50671700 AATTGAG-AATGATGAT
1 AATTGAGAAATGATGAT
50671716 ATGTGAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.29
Consensus pattern (18 bp):
AATTGAGAAATGATGATG
Found at i:50673325 original size:27 final size:27
Alignment explanation
Indices: 50673287--50673340 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
50673277 GGGAAGGTAG
50673287 AACCTTTGTTGAATTGTAGATATTTAT
1 AACCTTTGTTGAATTGTAGATATTTAT
50673314 AACCTTTGTTGAATTGTAGATATTTAT
1 AACCTTTGTTGAATTGTAGATATTTAT
50673341 CTCAAATAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (27 bp):
AACCTTTGTTGAATTGTAGATATTTAT
Found at i:50673788 original size:6 final size:6
Alignment explanation
Indices: 50673777--50673830 Score: 63
Period size: 6 Copynumber: 9.0 Consensus size: 6
50673767 GATCATTTCC
* * * * *
50673777 CATTTT CATTTT CATTTT CATTTT CATTTC CGTTTC CATTTC CATTTC
1 CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT
50673825 CATTTT
1 CATTTT
50673831 TGAGAAACAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.15, C:0.24, G:0.02, T:0.59
Consensus pattern (6 bp):
CATTTT
Found at i:50673794 original size:12 final size:12
Alignment explanation
Indices: 50673769--50673830 Score: 70
Period size: 12 Copynumber: 5.1 Consensus size: 12
50673759 TGCAAATGGA
50673769 TCATTTCCCATTT
1 TCATTT-CCATTT
*
50673782 TCATTTTCATTT
1 TCATTTCCATTT
*
50673794 TCATTTTCATTT
1 TCATTTCCATTT
* *
50673806 CCGTTTCCATTT
1 TCATTTCCATTT
*
50673818 CCATTTCCATTT
1 TCATTTCCATTT
50673830 T
1 T
50673831 TGAGAAACAC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
12 37 0.86
13 6 0.14
ACGTcount: A:0.15, C:0.26, G:0.02, T:0.58
Consensus pattern (12 bp):
TCATTTCCATTT
Found at i:50673800 original size:18 final size:18
Alignment explanation
Indices: 50673777--50673830 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
50673767 GATCATTTCC
*
50673777 CATTTTCATTTTCATTTT
1 CATTTTCATTTCCATTTT
* *
50673795 CATTTTCATTTCCGTTTC
1 CATTTTCATTTCCATTTT
*
50673813 CATTTCCATTTCCATTTT
1 CATTTTCATTTCCATTTT
50673831 TGAGAAACAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.15, C:0.24, G:0.02, T:0.59
Consensus pattern (18 bp):
CATTTTCATTTCCATTTT
Found at i:50676537 original size:20 final size:22
Alignment explanation
Indices: 50676498--50676548 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 22
50676488 GAAAGTAATG
50676498 AAAATT-TATTTTCTTAGAA-T
1 AAAATTCTATTTTCTTAGAATT
50676518 -AAATTCTATTTTC-TAGGAATT
1 AAAATTCTATTTTCTTA-GAATT
50676539 AAAATTCTAT
1 AAAATTCTAT
50676549 CGGTTTCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 7 0.26
20 10 0.37
21 1 0.04
22 9 0.33
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (22 bp):
AAAATTCTATTTTCTTAGAATT
Found at i:50682170 original size:12 final size:12
Alignment explanation
Indices: 50682153--50682190 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
50682143 AGACAAACAA
50682153 ATAAAATAATAT
1 ATAAAATAATAT
50682165 ATAAAAATAATA-
1 AT-AAAATAATAT
50682177 ATAATAATAATAT
1 ATAA-AATAATAT
50682190 A
1 A
50682191 GTAACATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
11 2 0.09
12 11 0.48
13 10 0.43
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
ATAAAATAATAT
Found at i:50682532 original size:7 final size:7
Alignment explanation
Indices: 50682522--50682628 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
50682512 AATAAATGAA
*
50682522 ATAATTT
1 ATAATAT
50682529 ATAATAT
1 ATAATAT
50682536 ATAATAT
1 ATAATAT
*
50682543 A-AAAAT
1 ATAATAT
* *
50682549 GTAAGTTT
1 ATAA-TAT
*
50682557 TTAA-A-
1 ATAATAT
*
50682562 ATAATGT
1 ATAATAT
50682569 ATAATAT
1 ATAATAT
*
50682576 A-AATAA
1 ATAATAT
50682582 ATAAATAT
1 AT-AATAT
50682590 ATAAGATAT
1 AT-A-ATAT
50682599 ATAAGT-T
1 ATAA-TAT
50682606 A-AA-AT
1 ATAATAT
50682611 ATAATAT
1 ATAATAT
50682618 ATAATA-
1 ATAATAT
50682624 ATAAT
1 ATAAT
50682629 TTACAACTTT
Statistics
Matches: 77, Mismatches: 12, Indels: 23
0.69 0.11 0.21
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 34 0.44
8 14 0.18
9 6 0.08
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (7 bp):
ATAATAT
Found at i:50682592 original size:21 final size:21
Alignment explanation
Indices: 50682560--50682624 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
50682550 TAAGTTTTTA
*
50682560 AAAT-AATGTATAATATAAAT
1 AAATAAATATATAATATAAAT
* *
50682580 AAATAAATATATAAGATATAT
1 AAATAAATATATAATATAAAT
*
50682601 AAGTTAAA-ATATAATATATAAT
1 AA-ATAAATATATAATATA-AAT
50682623 AA
1 AA
50682625 TAATTTACAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 4 0.11
21 24 0.67
22 8 0.22
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.34
Consensus pattern (21 bp):
AAATAAATATATAATATAAAT
Found at i:50682593 original size:28 final size:29
Alignment explanation
Indices: 50682562--50682622 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
50682552 AGTTTTTAAA
50682562 ATAATGTATAATATAA-AT-AAATA-AATAT
1 ATAATG-AT-ATATAAGATAAAATATAATAT
*
50682590 ATAA-GATATATAAGTTAAAATATAATAT
1 ATAATGATATATAAGATAAAATATAATAT
50682618 ATAAT
1 ATAAT
50682623 AATAATTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 6 0.21
26 3 0.11
27 6 0.21
28 13 0.46
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (29 bp):
ATAATGATATATAAGATAAAATATAATAT
Found at i:50682666 original size:12 final size:12
Alignment explanation
Indices: 50682644--50682677 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
50682634 ACTTTTGAAA
50682644 ATATA-AATAAT
1 ATATATAATAAT
50682655 ATATATAATAAT
1 ATATATAATAAT
50682667 ATATATAATAA
1 ATATATAATAA
50682678 ATTAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 5 0.23
12 17 0.77
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
ATATATAATAAT
Found at i:50683031 original size:17 final size:18
Alignment explanation
Indices: 50682978--50683138 Score: 211
Period size: 17 Copynumber: 8.9 Consensus size: 18
50682968 AATCATATCT
*
50682978 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
50682997 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
50683015 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
50683032 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
*
50683050 TTTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
50683067 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
*
50683085 TCTATGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
50683102 TCTAAGATTGCATATCACA
1 TCTAAGATTGC-TATCATA
50683121 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
50683139 TGAAGATTAT
Statistics
Matches: 125, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
17 46 0.37
18 46 0.37
19 33 0.26
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:50683036 original size:35 final size:35
Alignment explanation
Indices: 50682978--50683130 Score: 252
Period size: 35 Copynumber: 4.3 Consensus size: 35
50682968 AATCATATCT
50682978 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
50683015 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
50683050 TTTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
50683085 TCTATGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
50683121 TCTAAGATTG
1 TCTAAGATTG
50683131 CATATCATTG
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
35 86 0.78
36 14 0.13
37 10 0.09
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.39
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:50684505 original size:33 final size:33
Alignment explanation
Indices: 50684468--50684534 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
50684458 TTAAATTGGT
50684468 AAACATCTATGTTTTGGTTGTGAATTGATAGAC
1 AAACATCTATGTTTTGGTTGTGAATTGATAGAC
50684501 AAACATCTATGTTTTGGTTGTGAATTGATAGAC
1 AAACATCTATGTTTTGGTTGTGAATTGATAGAC
50684534 A
1 A
50684535 CATAATTTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (33 bp):
AAACATCTATGTTTTGGTTGTGAATTGATAGAC
Found at i:50684952 original size:116 final size:116
Alignment explanation
Indices: 50684797--50685011 Score: 279
Period size: 116 Copynumber: 1.9 Consensus size: 116
50684787 TTTCCAATAG
* * * *
50684797 GTATCAATACCACATAACATGTATCAATTCCTGTGACTTAAATGAAGAATTTTTAAAACACCGAA
1 GTATCAATACCACATAACAGGTATCAATACATGTAACTTAAATGAAGAATTTTTAAAACACCGAA
* *
50684862 ACTAAAAATAGTATCGGTACCCACCCAAGGGTATTGATACTTTTTGGAAAA
66 ACTAAAAACAGTATCGATACCCACCCAAGGGTATTGATACTTTTTGGAAAA
* * * * **
50684913 GTATCGATACCACATGAA-AGGTATCGATACATGTAACTTAAATGAAGTATTTTTAAAATATTGA
1 GTATCAATACCACAT-AACAGGTATCAATACATGTAACTTAAATGAAGAATTTTTAAAACACCGA
* * *
50684977 AGCTAAAAACAGTATTGATACCCAGCCAAGGGTAT
65 AACTAAAAACAGTATCGATACCCACCCAAGGGTAT
50685012 CGATGTAACA
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
116 81 0.98
117 2 0.02
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.28
Consensus pattern (116 bp):
GTATCAATACCACATAACAGGTATCAATACATGTAACTTAAATGAAGAATTTTTAAAACACCGAA
ACTAAAAACAGTATCGATACCCACCCAAGGGTATTGATACTTTTTGGAAAA
Found at i:50695715 original size:41 final size:41
Alignment explanation
Indices: 50695659--50695740 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
50695649 ATAAAGAAAA
*
50695659 AAAAAATTGAAGGCCTTAGTTTCAAAATGGCTTCAATGAGG
1 AAAAAATTGAAGGCCTCAGTTTCAAAATGGCTTCAATGAGG
50695700 AAAAAATTGAAGGCCTCAGTTTCAAAATGGCTTCAATGAGG
1 AAAAAATTGAAGGCCTCAGTTTCAAAATGGCTTCAATGAGG
50695741 CTCCTTGCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (41 bp):
AAAAAATTGAAGGCCTCAGTTTCAAAATGGCTTCAATGAGG
Found at i:50695932 original size:15 final size:15
Alignment explanation
Indices: 50695912--50695942 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
50695902 GTCATGTAAG
50695912 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
50695927 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
50695942 T
1 T
50695943 ATATTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:50696132 original size:17 final size:17
Alignment explanation
Indices: 50696099--50696137 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
50696089 TAAGCTTTTG
50696099 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
50696116 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
50696133 ATTTT
1 ATTTT
50696138 CCACAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:50696903 original size:15 final size:15
Alignment explanation
Indices: 50696879--50696908 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50696869 TGGAGATCGA
*
50696879 GGAAATGGTCGTGGT
1 GGAAAAGGTCGTGGT
50696894 GGAAAAGGTCGTGGT
1 GGAAAAGGTCGTGGT
50696909 CAAGAAGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.07, G:0.47, T:0.23
Consensus pattern (15 bp):
GGAAAAGGTCGTGGT
Found at i:50700289 original size:15 final size:15
Alignment explanation
Indices: 50700269--50700299 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
50700259 GTCATGTAAG
50700269 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
50700284 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
50700299 T
1 T
50700300 ATATTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:50700489 original size:17 final size:17
Alignment explanation
Indices: 50700456--50700494 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
50700446 TAAGCTTTTG
50700456 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
50700473 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
50700490 ATTTT
1 ATTTT
50700495 CCACAATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:50702553 original size:21 final size:22
Alignment explanation
Indices: 50702529--50702571 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
50702519 TTTATTTTTA
50702529 AAAATATT-TAAATATT-AATAT
1 AAAATATTAT-AATATTCAATAT
50702550 AAAATATTATAATATTCAATAT
1 AAAATATTATAATATTCAATAT
50702572 TATTAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAATATTATAATATTCAATAT
Found at i:50705806 original size:36 final size:36
Alignment explanation
Indices: 50705715--50705806 Score: 105
Period size: 36 Copynumber: 2.6 Consensus size: 36
50705705 ATATTCCAAC
* *
50705715 CAAAACACATCAGATGCTCATAAAAGCTAATCCATT
1 CAAAACACACCAGATGCTCATAAAAGATAATCCATT
** * * *
50705751 TGAAACACACTAGATGCTCATAACAGATAATTCATT
1 CAAAACACACCAGATGCTCATAAAAGATAATCCATT
50705787 CAAAACACACCA-ATAGCTCA
1 CAAAACACACCAGAT-GCTCA
50705807 GATGAGCTAG
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
35 2 0.04
36 43 0.96
ACGTcount: A:0.45, C:0.25, G:0.09, T:0.22
Consensus pattern (36 bp):
CAAAACACACCAGATGCTCATAAAAGATAATCCATT
Found at i:50710774 original size:12 final size:13
Alignment explanation
Indices: 50710752--50710780 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
50710742 AGTGAGTAGT
50710752 TTTTGAATTTTAA
1 TTTTGAATTTTAA
50710765 TTTT-AATTTTAA
1 TTTTGAATTTTAA
50710777 TTTT
1 TTTT
50710781 TGTTAGTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (13 bp):
TTTTGAATTTTAA
Found at i:50715191 original size:21 final size:22
Alignment explanation
Indices: 50715167--50715209 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
50715157 TTTATTTTTA
50715167 AAAATATT-TAAATATT-AATAT
1 AAAATATTAT-AATATTCAATAT
50715188 AAAATATTATAATATTCAATAT
1 AAAATATTATAATATTCAATAT
50715210 TATTAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAATATTATAATATTCAATAT
Found at i:50717854 original size:23 final size:23
Alignment explanation
Indices: 50717824--50717903 Score: 96
Period size: 23 Copynumber: 3.7 Consensus size: 23
50717814 AAACACAACA
50717824 TTGCATTAACACATCATTCATAT
1 TTGCATTAACACATCATTCATAT
* *
50717847 TTGCATTAA-A-A-CA-TCTTAC
1 TTGCATTAACACATCATTCATAT
*
50717866 CTGCATTAACACATCATTCATAT
1 TTGCATTAACACATCATTCATAT
*
50717889 TTGCATTAAAACATC
1 TTGCATTAACACATC
50717904 TTACCTCATT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
19 12 0.26
20 3 0.07
21 2 0.04
22 3 0.07
23 26 0.57
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (23 bp):
TTGCATTAACACATCATTCATAT
Found at i:50717871 original size:42 final size:42
Alignment explanation
Indices: 50717825--50717913 Score: 171
Period size: 42 Copynumber: 2.1 Consensus size: 42
50717815 AACACAACAT
50717825 TGCATTAACACATCATTCATATTTGCATTAAAACATCTTACC
1 TGCATTAACACATCATTCATATTTGCATTAAAACATCTTACC
50717867 TGCATTAACACATCATTCATATTTGCATTAAAACATCTTACC
1 TGCATTAACACATCATTCATATTTGCATTAAAACATCTTACC
50717909 T-CATT
1 TGCATT
50717914 CTTATATATA
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 4 0.09
42 43 0.91
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (42 bp):
TGCATTAACACATCATTCATATTTGCATTAAAACATCTTACC
Found at i:50717872 original size:19 final size:19
Alignment explanation
Indices: 50717848--50717913 Score: 62
Period size: 19 Copynumber: 3.3 Consensus size: 19
50717838 CATTCATATT
50717848 TGCATTAAAACATCTTACC
1 TGCATTAAAACATCTTACC
* **
50717867 TGCATTAACACATCATTCATATT
1 TGCATTAA-A-A-CA-TCTTACC
50717890 TGCATTAAAACATCTTACC
1 TGCATTAAAACATCTTACC
50717909 T-CATT
1 TGCATT
50717914 CTTATATATA
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
18 4 0.11
19 13 0.35
20 3 0.08
21 2 0.05
22 3 0.08
23 12 0.32
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.36
Consensus pattern (19 bp):
TGCATTAAAACATCTTACC
Found at i:50718431 original size:36 final size:36
Alignment explanation
Indices: 50718375--50718495 Score: 122
Period size: 36 Copynumber: 3.4 Consensus size: 36
50718365 TATTCCAACC
*
50718375 AAAACACATCAAATGCTCATAAGAGCTAATCCATCT
1 AAAACACACCAAATGCTCATAAGAGCTAATCCATCT
* *
50718411 AAAACACACCAGATGTTCATAAGAGCTAATCCATCCT
1 AAAACACACCAAATGCTCATAAGAGCTAATCCAT-CT
* ** *
50718448 -AAGCACACC-AATGGCTCCGAAGAGCTAGTCCAAT-T
1 AAAACACACCAAAT-GCTCATAAGAGCTAATCC-ATCT
*
50718483 GAAACACACCAAA
1 AAAACACACCAAA
50718496 AGAAGGAGTA
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
35 3 0.04
36 61 0.87
37 6 0.09
ACGTcount: A:0.42, C:0.27, G:0.12, T:0.18
Consensus pattern (36 bp):
AAAACACACCAAATGCTCATAAGAGCTAATCCATCT
Found at i:50722329 original size:24 final size:24
Alignment explanation
Indices: 50722297--50722355 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
50722287 ATGTACGCTT
* * *
50722297 ACACGAGCTGTTATTAAAATGCTC
1 ACACGAGCTATAATCAAAATGCTC
*
50722321 ACACGAGCTATAATCATAATGCTC
1 ACACGAGCTATAATCAAAATGCTC
50722345 ACACGAGCTAT
1 ACACGAGCTAT
50722356 GAAAATGGGC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (24 bp):
ACACGAGCTATAATCAAAATGCTC
Found at i:50724364 original size:26 final size:27
Alignment explanation
Indices: 50724328--50724382 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
50724318 CATATAAACA
*
50724328 TTTCATATAAT-AGTTCATATAATTAT
1 TTTCATATAATCAATTCATATAATTAT
50724354 TTTCATATAATCAATTCATATAATTAT
1 TTTCATATAATCAATTCATATAATTAT
50724381 TT
1 TT
50724383 CATTTCTCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 11 0.41
27 16 0.59
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (27 bp):
TTTCATATAATCAATTCATATAATTAT
Found at i:50724377 original size:13 final size:13
Alignment explanation
Indices: 50724318--50724385 Score: 75
Period size: 13 Copynumber: 5.2 Consensus size: 13
50724308 CATATCTATC
*
50724318 CATATAAACATTT
1 CATATAATCATTT
*
50724331 CATATAAT-AGTT
1 CATATAATCATTT
*
50724343 CATATAATTATTTT
1 CATATAATCA-TTT
*
50724357 CATATAATCAATT
1 CATATAATCATTT
*
50724370 CATATAATTATTT
1 CATATAATCATTT
50724383 CAT
1 CAT
50724386 TTCTCTATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
12 11 0.24
13 24 0.52
14 11 0.24
ACGTcount: A:0.41, C:0.12, G:0.01, T:0.46
Consensus pattern (13 bp):
CATATAATCATTT
Found at i:50727613 original size:13 final size:14
Alignment explanation
Indices: 50727580--50727617 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
50727570 GGATTTTGTA
50727580 TATCTGT-TCTGCT
1 TATCTGTATCTGCT
*
50727593 TATTTGTATCTG-T
1 TATCTGTATCTGCT
50727606 TATCTGTATCTG
1 TATCTGTATCTG
50727618 AAATTATGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 18 0.82
14 4 0.18
ACGTcount: A:0.13, C:0.16, G:0.16, T:0.55
Consensus pattern (14 bp):
TATCTGTATCTGCT
Found at i:50729927 original size:38 final size:38
Alignment explanation
Indices: 50729885--50730044 Score: 205
Period size: 38 Copynumber: 4.2 Consensus size: 38
50729875 ACAGGCTATA
*
50729885 TGCTGAAATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
50729923 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * *
50729961 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTAG
1 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * * * *
50729999 TGCTGGTATTATATCTGAGCTTAAAGTCCCGCAGGTTTTG
1 TGCTGGAATTATATCCG-GGTTAAA-TCCCGCAGGCTTCG
50730039 TGCTGG
1 TGCTGG
50730045 TGACTAGATT
Statistics
Matches: 109, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
37 1 0.01
38 83 0.76
39 8 0.07
40 17 0.16
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (38 bp):
TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:50729965 original size:76 final size:78
Alignment explanation
Indices: 50729856--50730043 Score: 229
Period size: 76 Copynumber: 2.4 Consensus size: 78
50729846 ATTTGATGTG
* * * * *
50729856 TATCCGGGCTTAAAGACCCACAGGCTAT-ATGCTGAAATTATATCCGGGTTAAATCCCGCAGGCT
1 TATCCGAGCTTAAAGTCCCGCAGGCT-TCGTGCTGAAATTATATCCGGGTTAAATCCCGCAGGCC
*
50729920 TCGTGCTGGTAATA
65 TAGTGCTGGTAATA
* **
50729934 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCT
1 TATCCGAGCTTAAAGTCCCGCAGGCTTCGTGCTGAAATTATATCCGGGTTAAATCCCGCAGGCCT
*
50729997 AGTGCTGGTATTA
66 AGTGCTGGTAATA
* * *
50730010 TATCTGAGCTTAAAGTCCCGCAGGTTTTGTGCTG
1 TATCCGAGCTTAAAGTCCCGCAGGCTTCGTGCTG
50730044 GTGACTAGAT
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
75 1 0.01
76 58 0.62
77 12 0.13
78 23 0.24
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (78 bp):
TATCCGAGCTTAAAGTCCCGCAGGCTTCGTGCTGAAATTATATCCGGGTTAAATCCCGCAGGCCT
AGTGCTGGTAATA
Found at i:50731823 original size:94 final size:94
Alignment explanation
Indices: 50731662--50731857 Score: 322
Period size: 94 Copynumber: 2.1 Consensus size: 94
50731652 GTAAAGTTAC
*
50731662 CAGTCTAGCTAAACTTTTAAAATGACAACGAATTACCAATTCAAGCTAAATCCGTATCACATGTA
1 CAGTCTAGCTAAACTTTTAAAATGACAACAAATTACCAATTCAAGCTAAATCCGTATCACATGTA
*
50731727 TATCTGAGTCCACAACAAATGCT-GAAGCT
66 TATCTGAATCCACAACAAATGCTAG-AGCT
* * * *
50731756 CAGTCTAGCTAAACTTTTAAAATGACAACAAATTACCAGTTCAGGCTAAATCCGTGTCACGTGTA
1 CAGTCTAGCTAAACTTTTAAAATGACAACAAATTACCAATTCAAGCTAAATCCGTATCACATGTA
50731821 TATCTGAATCCACAACAAATGCTAGAGCT
66 TATCTGAATCCACAACAAATGCTAGAGCT
50731850 CAGTCTAG
1 CAGTCTAG
50731858 AATGGGAATC
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
94 94 0.99
95 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (94 bp):
CAGTCTAGCTAAACTTTTAAAATGACAACAAATTACCAATTCAAGCTAAATCCGTATCACATGTA
TATCTGAATCCACAACAAATGCTAGAGCT
Found at i:50734037 original size:20 final size:20
Alignment explanation
Indices: 50734014--50734055 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
50734004 AACAAGAGTC
*
50734014 AAATTTAATTAATT-TTTTTT
1 AAATCTAATT-ATTATTTTTT
50734034 AAATCTAATTATTATTTTTT
1 AAATCTAATTATTATTTTTT
50734054 AA
1 AA
50734056 TAAAAAATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (20 bp):
AAATCTAATTATTATTTTTT
Found at i:50735999 original size:6 final size:6
Alignment explanation
Indices: 50735988--50736017 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
50735978 CATCATTTGA
50735988 CCCATC CCCATC CCCATC CCCATC CCCATC
1 CCCATC CCCATC CCCATC CCCATC CCCATC
50736018 ATCATCATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.67, G:0.00, T:0.17
Consensus pattern (6 bp):
CCCATC
Found at i:50736023 original size:18 final size:18
Alignment explanation
Indices: 50735988--50736023 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
50735978 CATCATTTGA
*
50735988 CCCATCCCCATCCCCATC
1 CCCATCCCCATCACCATC
*
50736006 CCCATCCCCATCATCATC
1 CCCATCCCCATCACCATC
50736024 ATCTAGCTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.61, G:0.00, T:0.19
Consensus pattern (18 bp):
CCCATCCCCATCACCATC
Found at i:50741481 original size:55 final size:55
Alignment explanation
Indices: 50741416--50741525 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
50741406 GAGTTCACCA
50741416 ACACCCTTTTACAATAAACCTATAGAAATTTATTTGAGTGGACCTTTATAAATAT
1 ACACCCTTTTACAATAAACCTATAGAAATTTATTTGAGTGGACCTTTATAAATAT
* *
50741471 ACACCCTTTTACAATAATCCTATAGCAATTTATTTGAGTGGACCTTTATAAATAT
1 ACACCCTTTTACAATAAACCTATAGAAATTTATTTGAGTGGACCTTTATAAATAT
50741526 GTAATCCAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.37
Consensus pattern (55 bp):
ACACCCTTTTACAATAAACCTATAGAAATTTATTTGAGTGGACCTTTATAAATAT
Found at i:50745269 original size:12 final size:13
Alignment explanation
Indices: 50745247--50745276 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
50745237 AGTGAGCAGT
50745247 TTTTGAATTTTAA
1 TTTTGAATTTTAA
50745260 TTTT-AATTTTAA
1 TTTTGAATTTTAA
50745272 TTTTG
1 TTTTG
50745277 TTAGTTCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (13 bp):
TTTTGAATTTTAA
Found at i:50747512 original size:14 final size:14
Alignment explanation
Indices: 50747493--50747520 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50747483 TATACCTCTA
50747493 TTTAATTGCTTAAC
1 TTTAATTGCTTAAC
50747507 TTTAATTGCTTAAC
1 TTTAATTGCTTAAC
50747521 CATTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.07, T:0.50
Consensus pattern (14 bp):
TTTAATTGCTTAAC
Found at i:50749933 original size:31 final size:31
Alignment explanation
Indices: 50749866--50749934 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
50749856 TTGGTCATTA
** **
50749866 AACTATTCAAAAGTTTTCATTTAATTCACTG
1 AACTATTTGAAAGTTTTCATTTAAGCCACTG
* *
50749897 AACTATTTGAAAGTTTTTATTTAAGCCATTG
1 AACTATTTGAAAGTTTTCATTTAAGCCACTG
*
50749928 GACTATT
1 AACTATT
50749935 AAGTTTTTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (31 bp):
AACTATTTGAAAGTTTTCATTTAAGCCACTG
Found at i:50751079 original size:24 final size:24
Alignment explanation
Indices: 50751041--50751093 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
50751031 ATTTCTAGAT
* *
50751041 ATTTTT-AAACTTTTAGAAAGCTCA
1 ATTTTTAAAAATTTAAGAAA-CTCA
*
50751065 ATTTTTAAAAATTTAAGAAACTTA
1 ATTTTTAAAAATTTAAGAAACTCA
50751089 ATTTT
1 ATTTT
50751094 GAAAGATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.45
Consensus pattern (24 bp):
ATTTTTAAAAATTTAAGAAACTCA
Found at i:50754313 original size:22 final size:22
Alignment explanation
Indices: 50754285--50754332 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
50754275 AATATAAATT
50754285 AAAATAAAT-TGAATAAAACATA
1 AAAATAAATCTGAA-AAAACATA
* *
50754307 AAAATAAATCTTAAAAAATATA
1 AAAATAAATCTGAAAAAACATA
50754329 AAAA
1 AAAA
50754333 GTTTAAACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 20 0.87
23 3 0.13
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.23
Consensus pattern (22 bp):
AAAATAAATCTGAAAAAACATA
Found at i:50755114 original size:23 final size:24
Alignment explanation
Indices: 50755081--50755125 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
50755071 CATAAATTTT
*
50755081 ATTTTTATATATGTTT-TTTCTGA
1 ATTTTTATATATATTTATTTCTGA
*
50755104 ATTTTTTTATATATTTATTTCT
1 ATTTTTATATATATTTATTTCT
50755126 ATTTTTCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.69
Consensus pattern (24 bp):
ATTTTTATATATATTTATTTCTGA
Found at i:50764236 original size:21 final size:21
Alignment explanation
Indices: 50764212--50764251 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
50764202 GATTATATTT
*
50764212 ATATATTTTAAATATTATAAA
1 ATATATTTAAAATATTATAAA
50764233 ATATATTTAAAATATTATA
1 ATATATTTAAAATATTATA
50764252 GATCTGTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATATATTTAAAATATTATAAA
Found at i:50768448 original size:20 final size:20
Alignment explanation
Indices: 50768383--50768450 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
50768373 CCACATTTTC
*
50768383 TAAATTTTATTTTTTATTTGT
1 TAAATTTT-CTTTTTATTTGT
* * *
50768404 TTAATTTCCTTTTTCTTT-T
1 TAAATTTTCTTTTTATTTGT
50768423 TAAATTTTCTTTATT-TTTGT
1 TAAATTTTCTTT-TTATTTGT
*
50768443 TGAATTTT
1 TAAATTTT
50768451 TTTCACCACA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
19 14 0.37
20 18 0.47
21 6 0.16
ACGTcount: A:0.19, C:0.06, G:0.04, T:0.71
Consensus pattern (20 bp):
TAAATTTTCTTTTTATTTGT
Found at i:50773069 original size:21 final size:21
Alignment explanation
Indices: 50773040--50773079 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50773030 TGACTACAAA
*
50773040 TCAGATTTTTGCTCCTGATTT
1 TCAGATTTTTCCTCCTGATTT
*
50773061 TCAGTTTTTTCCTCCTGAT
1 TCAGATTTTTCCTCCTGAT
50773080 AAAATTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.23, G:0.12, T:0.53
Consensus pattern (21 bp):
TCAGATTTTTCCTCCTGATTT
Found at i:50777204 original size:39 final size:39
Alignment explanation
Indices: 50777161--50777240 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
50777151 TGTAATTGTA
50777161 AATCAACCAGCTATTTGGAGTTGCGATTGTAAATCAACT
1 AATCAACCAGCTATTTGGAGTTGCGATTGTAAATCAACT
** *
50777200 AATCAATGAGCTGTTTGGAGTTGCGATTGTAAATCAACT
1 AATCAACCAGCTATTTGGAGTTGCGATTGTAAATCAACT
50777239 AA
1 AA
50777241 CTTAGAAGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (39 bp):
AATCAACCAGCTATTTGGAGTTGCGATTGTAAATCAACT
Found at i:50777316 original size:94 final size:93
Alignment explanation
Indices: 50777207--50777391 Score: 271
Period size: 94 Copynumber: 2.0 Consensus size: 93
50777197 ACTAATCAAT
* * * * *
50777207 GAGCTGTTTGGAGTTGCGATTGTAAATCAACTAACTTAGAAGAAATTGTTCATGATCGTAAATCA
1 GAGCTATTTGGAGTTGAGATCGTAAATCAACTAACTCAGAAGAAATTGTT-ATGATCATAAATCA
*
50777272 ATGAACTTAGGTTATGATCGTAAATCAGC
65 ATGAACTCAGGTTATGATCGTAAATCAGC
* * *
50777301 GAGCTATTTGGAGTTGAGATCGTAAATCAGCTAACTCAGAATAAATTGTTATGATTATAAATCAA
1 GAGCTATTTGGAGTTGAGATCGTAAATCAACTAACTCAGAAGAAATTGTTATGATCATAAATCAA
*
50777366 TGAACTCAGGTTGTGATCGTAAATCA
66 TGAACTCAGGTTATGATCGTAAATCA
50777392 ATGAGCCTTA
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
93 37 0.46
94 44 0.54
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (93 bp):
GAGCTATTTGGAGTTGAGATCGTAAATCAACTAACTCAGAAGAAATTGTTATGATCATAAATCAA
TGAACTCAGGTTATGATCGTAAATCAGC
Done.