Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 158 of 250
Found at i:50777529 original size:130 final size:129
Alignment explanation
Indices: 50777286--50777622 Score: 424
Period size: 130 Copynumber: 2.6 Consensus size: 129
50777276 ACTTAGGTTA
* * * * * *
50777286 TGATCGTAAATCAGCGAGCTATTTGGAGTTGA-GATCGTAAATCAGCTAACTCAGAATAAATTGT
1 TGATCATAAATCAACGAGTTGTTTGGAGTT-ACAATCGTAAATCAGCTAACTCAGAAGAAATTGT
* * *
50777350 TATGATTATAAATCAATGAACTCAGGTTGTGATCGTAAATCAATGAGCCTTAATAATATCAACCG
65 TATGATTATAAATCAATGAACTCAGGTGGTGATCGTAAATCAATAAGCCTTAAAAATATCAACCG
** * * * *
50777415 TGATTGTAAATCAATGAGTTGTTTGGAGTTACAATTGTAAATCAGCTAACTAAAAAGAAATTGTT
1 TGATCATAAATCAACGAGTTGTTTGGAGTTACAATCGTAAATCAGCTAACTCAGAAGAAATTGTT
* * * *
50777480 CATGATTGTAAATCAATGAACTTAGGTGGTGATCGTAAATCAATAAGCCTTAAAAATATCAGCTG
66 -ATGATTATAAATCAATGAACTCAGGTGGTGATCGTAAATCAATAAGCCTTAAAAATATCAACCG
* * * *
50777545 TGATCATAAATCAGCGAGTTGTTTGGAGTTGCGATCGTAAATCAACTAACTCAGAAGAAATTGTT
1 TGATCATAAATCAACGAGTTGTTTGGAGTTACAATCGTAAATCAGCTAACTCAGAAGAAATTG-T
*
50777610 TATGATCATAAAT
65 TATGATTATAAAT
50777623 TAGTGAGCCT
Statistics
Matches: 176, Mismatches: 29, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
128 1 0.01
129 53 0.30
130 120 0.68
131 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (129 bp):
TGATCATAAATCAACGAGTTGTTTGGAGTTACAATCGTAAATCAGCTAACTCAGAAGAAATTGTT
ATGATTATAAATCAATGAACTCAGGTGGTGATCGTAAATCAATAAGCCTTAAAAATATCAACCG
Found at i:50778098 original size:63 final size:63
Alignment explanation
Indices: 50777999--50778125 Score: 236
Period size: 63 Copynumber: 2.0 Consensus size: 63
50777989 TCTTGTAGGG
* *
50777999 CCCTTCCTAATTGGGATCCATCTTTCCTTGCTGCGATGTTGGTAAATTGGCTTTAATATTCCT
1 CCCTTCCCAATTGGGATCCATCTTTCCTTGCTGCGATGTTGGTAAATTGGCTTCAATATTCCT
50778062 CCCTTCCCAATTGGGATCCATCTTTCCTTGCTGCGATGTTGGTAAATTGGCTTCAATATTCCT
1 CCCTTCCCAATTGGGATCCATCTTTCCTTGCTGCGATGTTGGTAAATTGGCTTCAATATTCCT
50778125 C
1 C
50778126 AAGACTAGAC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.39
Consensus pattern (63 bp):
CCCTTCCCAATTGGGATCCATCTTTCCTTGCTGCGATGTTGGTAAATTGGCTTCAATATTCCT
Found at i:50786981 original size:33 final size:33
Alignment explanation
Indices: 50786934--50786998 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
50786924 TTTGCATGGT
* *
50786934 GATGCGAACCCACCACGTTCAAG-CTCATGTAAG
1 GATGCAAACCCACCACGTACAAGCCT-ATGTAAG
*
50786967 GATGCAAACTCACCACGTACAAGCCTATGTAA
1 GATGCAAACCCACCACGTACAAGCCTATGTAA
50786999 AGGTGCGAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.18
Consensus pattern (33 bp):
GATGCAAACCCACCACGTACAAGCCTATGTAAG
Found at i:50802982 original size:23 final size:22
Alignment explanation
Indices: 50802943--50802987 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
50802933 TATTAAAATA
* * *
50802943 ATAAAATTATATTTTTACTTTC
1 ATAAAAATATATATTTAATTTC
50802965 ATAAAAATATATAATTTAATTTC
1 ATAAAAATATAT-ATTTAATTTC
50802988 GACCTTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (22 bp):
ATAAAAATATATATTTAATTTC
Found at i:50803603 original size:13 final size:13
Alignment explanation
Indices: 50803585--50803610 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50803575 AATTAATGTT
50803585 TTGATAGGGATAA
1 TTGATAGGGATAA
50803598 TTGATAGGGATAA
1 TTGATAGGGATAA
50803611 GTTTTCAGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (13 bp):
TTGATAGGGATAA
Found at i:50806250 original size:48 final size:49
Alignment explanation
Indices: 50806198--50806290 Score: 170
Period size: 49 Copynumber: 1.9 Consensus size: 49
50806188 TTGTTTGAAC
*
50806198 ATTTGTGTTTGATATGCAAA-AAATGGAGAAAGTTAAATTTATATAAAA
1 ATTTGTGTTTAATATGCAAATAAATGGAGAAAGTTAAATTTATATAAAA
50806246 ATTTGTGTTTAATATGCAAATAAATGGAGAAAGTTAAATTTATAT
1 ATTTGTGTTTAATATGCAAATAAATGGAGAAAGTTAAATTTATAT
50806291 CTACTTCCAT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 19 0.44
49 24 0.56
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.38
Consensus pattern (49 bp):
ATTTGTGTTTAATATGCAAATAAATGGAGAAAGTTAAATTTATATAAAA
Found at i:50815850 original size:5 final size:5
Alignment explanation
Indices: 50815840--50815864 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
50815830 CTATTGTGAA
50815840 TTGTG TTGTG TTGTG TTGTG TTGTG
1 TTGTG TTGTG TTGTG TTGTG TTGTG
50815865 GGAATGATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.40, T:0.60
Consensus pattern (5 bp):
TTGTG
Found at i:50818528 original size:27 final size:27
Alignment explanation
Indices: 50818486--50818617 Score: 173
Period size: 27 Copynumber: 4.9 Consensus size: 27
50818476 GTCACTAGAC
50818486 ACAGATAT-TGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
50818512 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* * *
50818539 TCAGATA-ATTGTGGCATAGCCACCAGG
1 ACAGATATA-TGTGGCAGAGCCACCAGA
50818566 ACAGATATATGTGGCAGAGCCACCA-A
1 ACAGATATATGTGGCAGAGCCACCAGA
*
50818592 ATCAGATA-ATTGTGGCATAGCCACCA
1 A-CAGATATA-TGTGGCAGAGCCACCA
50818618 AGACGCTTCC
Statistics
Matches: 94, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
26 11 0.12
27 82 0.87
28 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:50818560 original size:54 final size:54
Alignment explanation
Indices: 50818487--50818617 Score: 228
Period size: 54 Copynumber: 2.4 Consensus size: 54
50818477 TCACTAGACA
* *
50818487 CAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAAAT
*
50818540 CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACCAAAT
1 CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAAAT
50818594 CAGATAATTGTGGCATAGCCACCA
1 CAGATAATTGTGGCATAGCCACCA
50818618 AGACGCTTCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 5 0.07
54 69 0.93
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAAAT
Found at i:50820240 original size:26 final size:26
Alignment explanation
Indices: 50820210--50820291 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
50820200 TGAAATTCCC
50820210 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
50820236 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
50820262 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
50820288 ATCA
1 ATCA
50820292 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:50833570 original size:17 final size:17
Alignment explanation
Indices: 50833550--50833597 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
50833540 TTTTACCCAT
*
50833550 TAAATTCTTTTAATTCA
1 TAAATTCTTCTAATTCA
*
50833567 TAAAATTC-ACTAATTCA
1 T-AAATTCTTCTAATTCA
*
50833584 AAAATTCTTCTAAT
1 TAAATTCTTCTAAT
50833598 GTCTTAGTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 6 0.24
17 13 0.52
18 6 0.24
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAATTCTTCTAATTCA
Found at i:50834095 original size:32 final size:32
Alignment explanation
Indices: 50834054--50834117 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
50834044 AAGCTTTAGG
50834054 GCCATTTATAACCTTGGAAACAAGAAATTGAC
1 GCCATTTATAACCTTGGAAACAAGAAATTGAC
*
50834086 GCCATTTATAACGTTGGAAACAAGAAATTGAC
1 GCCATTTATAACCTTGGAAACAAGAAATTGAC
50834118 TTTTACACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (32 bp):
GCCATTTATAACCTTGGAAACAAGAAATTGAC
Found at i:50836783 original size:40 final size:40
Alignment explanation
Indices: 50836724--50836935 Score: 277
Period size: 40 Copynumber: 5.3 Consensus size: 40
50836714 CATTTGAATG
* *
50836724 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
50836764 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
50836804 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
50836844 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
50836884 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
50836924 ATATCC-GGCTAA
1 ATATCCGGGCTAA
50836936 ATTCCGAAGA
Statistics
Matches: 148, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 10 0.07
40 133 0.90
41 5 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:50836861 original size:80 final size:80
Alignment explanation
Indices: 50836728--50836935 Score: 337
Period size: 80 Copynumber: 2.6 Consensus size: 80
50836718 TGAATGATAT
*
50836728 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
*
50836793 TGCGAGTTGCTATAC
66 TGCGAGTTGATATAC
*
50836808 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
*
50836873 TGCGAGTTGATATAT
66 TGCGAGTTGATATAC
* * * *
50836888 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
50836936 ATTCCGAAGA
Statistics
Matches: 119, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 6 0.05
80 113 0.95
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGATATAC
Found at i:50857309 original size:21 final size:20
Alignment explanation
Indices: 50857280--50857334 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
50857270 AAAAACACTT
50857280 TAAC-TGATTGAAGAAAAGTC
1 TAACTTGATTGAA-AAAAGTC
** *
50857300 TAACTTGATTGAAACCATTC
1 TAACTTGATTGAAAAAAGTC
*
50857320 TAACTTGATTTAAAA
1 TAACTTGATTGAAAA
50857335 GTTGACTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 21 0.72
21 8 0.28
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.33
Consensus pattern (20 bp):
TAACTTGATTGAAAAAAGTC
Found at i:50861149 original size:12 final size:14
Alignment explanation
Indices: 50861132--50861164 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
50861122 TAAAGAAATA
50861132 ATAAATTG-AT-TG
1 ATAAATTGAATATG
50861144 ATAAATTGAATATG
1 ATAAATTGAATATG
50861158 ATAAATT
1 ATAAATT
50861165 ACAATTTGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
13 2 0.11
14 9 0.47
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (14 bp):
ATAAATTGAATATG
Found at i:50861830 original size:34 final size:34
Alignment explanation
Indices: 50861750--50861830 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 34
50861740 TTATAGTTTT
* * *
50861750 AATATTGGTGTGAAAGTCAATGATATATTTTAAG
1 AATATTGGTATGGAACTCAATGATATATTTTAAG
* * * *
50861784 CATATTGTTATGGAACTCAATGGTATGTTTTAAG
1 AATATTGGTATGGAACTCAATGATATATTTTAAG
50861818 AATATTGGTATGG
1 AATATTGGTATGG
50861831 TGATAGAAAG
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.33, C:0.05, G:0.22, T:0.40
Consensus pattern (34 bp):
AATATTGGTATGGAACTCAATGATATATTTTAAG
Found at i:50869660 original size:27 final size:26
Alignment explanation
Indices: 50869604--50869714 Score: 159
Period size: 27 Copynumber: 4.2 Consensus size: 26
50869594 AGCCTGGCTG
* *
50869604 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
50869630 CCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
50869657 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
50869684 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
50869711 CCAG
1 CCAG
50869715 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
26 15 0.19
27 61 0.78
28 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:50871158 original size:24 final size:24
Alignment explanation
Indices: 50871131--50871201 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
50871121 CTAGATTTCC
**
50871131 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
50871155 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
50871179 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
50871202 CTCCTGATAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:50873300 original size:19 final size:18
Alignment explanation
Indices: 50873276--50873311 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
50873266 TGATATATTT
50873276 TATTAATAAATAAAGTAAA
1 TATTAATAAAT-AAGTAAA
*
50873295 TATTAATTAATAAGTAA
1 TATTAATAAATAAGTAA
50873312 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (18 bp):
TATTAATAAATAAGTAAA
Found at i:50874230 original size:38 final size:38
Alignment explanation
Indices: 50874178--50874257 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
50874168 TTTAATAAGT
* ** *
50874178 ATATGGATACATGAAATGGACCATGATTTGGATTAATG
1 ATATAGATACATGAAATAAACCATGATTTAGATTAATG
*
50874216 ATATAGATATATGAAATAAACCATGATTTAGATTAATG
1 ATATAGATACATGAAATAAACCATGATTTAGATTAATG
50874254 ATAT
1 ATAT
50874258 GGATTATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.42, C:0.06, G:0.17, T:0.34
Consensus pattern (38 bp):
ATATAGATACATGAAATAAACCATGATTTAGATTAATG
Found at i:50877567 original size:21 final size:19
Alignment explanation
Indices: 50877529--50877576 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
50877519 AGATAGTTTT
*
50877529 CTTTATTTTATGTTTTAAC
1 CTTTATTTTATATTTTAAC
50877548 CTTTATTATTACTATTTTAAC
1 CTTTATT-TTA-TATTTTAAC
*
50877569 TTTTATTT
1 CTTTATTT
50877577 AACACATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.28
20 4 0.16
21 14 0.56
ACGTcount: A:0.23, C:0.10, G:0.02, T:0.65
Consensus pattern (19 bp):
CTTTATTTTATATTTTAAC
Found at i:50878592 original size:22 final size:22
Alignment explanation
Indices: 50878549--50878592 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
50878539 TTTTGTTGCT
* *
50878549 TCCATTTTCAGCACCTTTGCTG
1 TCCATTTTCAGCACCATAGCTG
50878571 TCCATTTT-AGTCACCATAGCTG
1 TCCATTTTCAG-CACCATAGCTG
50878593 CACCTCATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.18, C:0.30, G:0.14, T:0.39
Consensus pattern (22 bp):
TCCATTTTCAGCACCATAGCTG
Found at i:50887269 original size:42 final size:42
Alignment explanation
Indices: 50887209--50887320 Score: 170
Period size: 42 Copynumber: 2.7 Consensus size: 42
50887199 AATGCAGGGG
* ** *
50887209 ACACACGGCCAATCCACATGCCCATGTGCTAGGCCGTGTGTC
1 ACACACGGTCAAGACACATGCCCGTGTGCTAGGCCGTGTGTC
* *
50887251 ACACACGGTCAAGACACATGCCTGTGTGCTAGGTCGTGTGTC
1 ACACACGGTCAAGACACATGCCCGTGTGCTAGGCCGTGTGTC
50887293 ACACACGGTCAAGACACATGCCCGTGTG
1 ACACACGGTCAAGACACATGCCCGTGTG
50887321 TCTACCCATG
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (42 bp):
ACACACGGTCAAGACACATGCCCGTGTGCTAGGCCGTGTGTC
Found at i:50893458 original size:31 final size:31
Alignment explanation
Indices: 50893420--50893479 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
50893410 TCGATCACTC
50893420 AAGGAATACCCGTCCGGGCTAGATCCTTTTT
1 AAGGAATACCCGTCCGGGCTAGATCCTTTTT
50893451 AAGGAATACCCGTCCGGGCTAGATCCTTT
1 AAGGAATACCCGTCCGGGCTAGATCCTTT
50893480 CTATATTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (31 bp):
AAGGAATACCCGTCCGGGCTAGATCCTTTTT
Found at i:50896299 original size:35 final size:35
Alignment explanation
Indices: 50896251--50896359 Score: 191
Period size: 35 Copynumber: 3.1 Consensus size: 35
50896241 GCTCAGGGCT
*
50896251 TTAACATAATAAAATTTTTATTTTAATATAAAAGG
1 TTAACATAATAAAATTTTTATTTTAATACAAAAGG
*
50896286 TTAACATATTAAAATTTTTATTTTAATACAAAAGG
1 TTAACATAATAAAATTTTTATTTTAATACAAAAGG
*
50896321 TTAACATAATAAAATTTTTATTTTAATACAAGAGG
1 TTAACATAATAAAATTTTTATTTTAATACAAAAGG
50896356 TTAA
1 TTAA
50896360 TGTTTATTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 70 1.00
ACGTcount: A:0.47, C:0.05, G:0.06, T:0.42
Consensus pattern (35 bp):
TTAACATAATAAAATTTTTATTTTAATACAAAAGG
Found at i:50897002 original size:23 final size:23
Alignment explanation
Indices: 50896975--50897021 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
50896965 TTAAATTTAA
50896975 TACATATACTCTTAGGAAACATT
1 TACATATACTCTTAGGAAACATT
50896998 TACATATACTCTTAGGAAACATT
1 TACATATACTCTTAGGAAACATT
50897021 T
1 T
50897022 TATCTAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (23 bp):
TACATATACTCTTAGGAAACATT
Found at i:50899658 original size:13 final size:13
Alignment explanation
Indices: 50899640--50899664 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50899630 GCCAACCATT
50899640 TATAGATTTTTTC
1 TATAGATTTTTTC
50899653 TATAGATTTTTT
1 TATAGATTTTTT
50899665 TGTTTTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.08, T:0.64
Consensus pattern (13 bp):
TATAGATTTTTTC
Found at i:50906202 original size:23 final size:23
Alignment explanation
Indices: 50906174--50906219 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
50906164 TGGGGAGAGG
50906174 TTATCAGAAAATAATTTGATTAT
1 TTATCAGAAAATAATTTGATTAT
50906197 TTATCAGAAAATAATTTGATTAT
1 TTATCAGAAAATAATTTGATTAT
50906220 CTTTTTGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.43
Consensus pattern (23 bp):
TTATCAGAAAATAATTTGATTAT
Found at i:50910418 original size:31 final size:31
Alignment explanation
Indices: 50910380--50910461 Score: 110
Period size: 31 Copynumber: 2.6 Consensus size: 31
50910370 ATGGCGGTAG
* * ** *
50910380 GACACTGTATCTATTCTTATCTGTTTTGCAT
1 GACACTGTATTTATTCTGATCTACTCTGCAT
*
50910411 GACACTGTATTTGTTCTGATCTACTCTGCAT
1 GACACTGTATTTATTCTGATCTACTCTGCAT
50910442 GACACTGTATTTATTCTGAT
1 GACACTGTATTTATTCTGAT
50910462 ATGTTATGTA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.21, C:0.20, G:0.15, T:0.45
Consensus pattern (31 bp):
GACACTGTATTTATTCTGATCTACTCTGCAT
Found at i:50923419 original size:20 final size:20
Alignment explanation
Indices: 50923394--50923440 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
50923384 CTTCCAGACA
50923394 ACGTCGTGACGTGATTTTTC
1 ACGTCGTGACGTGATTTTTC
50923414 ACGTCGTGACGTGATTTTTC
1 ACGTCGTGACGTGATTTTTC
50923434 ACGTCGT
1 ACGTCGT
50923441 CTCGGCATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.15, C:0.21, G:0.26, T:0.38
Consensus pattern (20 bp):
ACGTCGTGACGTGATTTTTC
Found at i:50931543 original size:27 final size:26
Alignment explanation
Indices: 50931513--50931571 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
50931503 GCACATAATT
50931513 AGGAAGCACTC-TCTCGAGCCATATAAC
1 AGGAAGC-CTCATCT-GAGCCATATAAC
* *
50931540 AGGAAG-CTCATGTGAGCCATATAAT
1 AGGAAGCCTCATCTGAGCCATATAAC
50931565 AGGAAGC
1 AGGAAGC
50931572 TTATCCGGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 20 0.71
26 2 0.07
27 6 0.21
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
AGGAAGCCTCATCTGAGCCATATAAC
Found at i:50934985 original size:56 final size:56
Alignment explanation
Indices: 50934918--50935030 Score: 190
Period size: 56 Copynumber: 2.0 Consensus size: 56
50934908 TTATTTACTC
* *
50934918 TAACTTCCAGAAGAATGATGACATAAACATTTATCAAATCTCTGCAAGTGATCATT
1 TAACTTCCAGAAGAATAATGACATAAACATTTACCAAATCTCTGCAAGTGATCATT
* *
50934974 TAACTTCCAGAAGAATAATGATATAAACATTTACCAAATCTCTTCAAGTGATCATT
1 TAACTTCCAGAAGAATAATGACATAAACATTTACCAAATCTCTGCAAGTGATCATT
50935030 T
1 T
50935031 GAAAAACTAG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.32
Consensus pattern (56 bp):
TAACTTCCAGAAGAATAATGACATAAACATTTACCAAATCTCTGCAAGTGATCATT
Found at i:50940028 original size:60 final size:54
Alignment explanation
Indices: 50939910--50940017 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
50939900 AAATTAACCA
*
50939910 TGATAATGTATGATTATCATGATTTTGATTATTAAATTATCTTTAAATAAAATT
1 TGATAATGTATGATTATCATGATTTTGATTATTAAATTATCTTTAAAGAAAATT
*
50939964 TGATAATGTATGGTTATCATGATTTTGATTATTAAATTATCTTTAAAGAAAATT
1 TGATAATGTATGATTATCATGATTTTGATTATTAAATTATCTTTAAAGAAAATT
50940018 GAACTGTGAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.38, C:0.04, G:0.11, T:0.47
Consensus pattern (54 bp):
TGATAATGTATGATTATCATGATTTTGATTATTAAATTATCTTTAAAGAAAATT
Found at i:50941967 original size:30 final size:30
Alignment explanation
Indices: 50941933--50941993 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
50941923 TCCTTAACTC
50941933 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
50941963 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
50941993 A
1 A
50941994 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:50945513 original size:22 final size:22
Alignment explanation
Indices: 50945456--50945503 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
50945446 TCACTTGCCG
50945456 AGAAACACCTTCATATTGTAAT
1 AGAAACACCTTCATATTGTAAT
50945478 AGAAACACCTTCATATTGTAAT
1 AGAAACACCTTCATATTGTAAT
50945500 AGAA
1 AGAA
50945504 TTTCTTTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (22 bp):
AGAAACACCTTCATATTGTAAT
Found at i:50949008 original size:15 final size:15
Alignment explanation
Indices: 50948988--50949017 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
50948978 TAAAGCCTCC
50948988 TTTTAAACAATCATT
1 TTTTAAACAATCATT
50949003 TTTTAAACAATCATT
1 TTTTAAACAATCATT
50949018 GTTTCTATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
TTTTAAACAATCATT
Found at i:50971574 original size:28 final size:28
Alignment explanation
Indices: 50971542--50971617 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 28
50971532 TTAATTTTGC
50971542 TAATTTTAGATTTTTATATATT-TTTTT
1 TAATTTTAGATTTTTATATATTGTTTTT
** * *
50971569 TGAATTTTCTATATTTATAAATTGTTTTT
1 T-AATTTTAGATTTTTATATATTGTTTTT
*
50971598 TATTTTTATGATTTTTATAT
1 TAATTTTA-GATTTTTATAT
50971618 TTATAAAAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
27 1 0.03
28 22 0.59
29 14 0.38
ACGTcount: A:0.26, C:0.01, G:0.05, T:0.67
Consensus pattern (28 bp):
TAATTTTAGATTTTTATATATTGTTTTT
Found at i:50972595 original size:16 final size:17
Alignment explanation
Indices: 50972562--50972598 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
50972552 TGGCTCCACC
50972562 AAATAAAATATTTAAAA
1 AAATAAAATATTTAAAA
50972579 AAATAATAAT-TTTAAAA
1 AAATAA-AATATTTAAAA
50972596 AAA
1 AAA
50972599 GGATTTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.84
18 3 0.16
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAATAAAATATTTAAAA
Found at i:50972678 original size:11 final size:11
Alignment explanation
Indices: 50972662--50972687 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
50972652 TTAAAATATG
50972662 ATAAACAAATA
1 ATAAACAAATA
50972673 ATAAACAAATA
1 ATAAACAAATA
50972684 ATAA
1 ATAA
50972688 TAAAAACAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.19
Consensus pattern (11 bp):
ATAAACAAATA
Found at i:50977241 original size:3 final size:3
Alignment explanation
Indices: 50977233--50977259 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
50977223 TCCTGTTACC
50977233 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
50977260 TCCAATTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:50988023 original size:20 final size:19
Alignment explanation
Indices: 50988000--50988041 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
50987990 AATAAATTTT
*
50988000 AAATTATTTTAAATATAATA
1 AAATAATTTT-AATATAATA
*
50988020 AAATAATTTTTATATAATA
1 AAATAATTTTAATATAATA
50988039 AAA
1 AAA
50988042 AATAAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
AAATAATTTTAATATAATA
Found at i:50988045 original size:26 final size:28
Alignment explanation
Indices: 50988016--50988085 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 28
50988006 TTTTAAATAT
50988016 AATAAAA-TAATTTTTATAT-AATAAAA
1 AATAAAATTAATTTTTATATAAATAAAA
* *
50988042 AATAAAATTAA-TTATATATAAATTAAA
1 AATAAAATTAATTTTTATATAAATAAAA
*
50988069 ATTAAAATTAATTTTTA
1 AATAAAATTAATTTTTA
50988086 AACATTCATT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 14 0.38
27 19 0.51
28 4 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (28 bp):
AATAAAATTAATTTTTATATAAATAAAA
Found at i:50988370 original size:13 final size:14
Alignment explanation
Indices: 50988354--50988382 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
50988344 ATTTTAGTCA
50988354 TTAATTTA-ATTTT
1 TTAATTTATATTTT
50988367 TTAATTTATATTTT
1 TTAATTTATATTTT
50988381 TT
1 TT
50988383 TCAAATTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (14 bp):
TTAATTTATATTTT
Found at i:50989025 original size:35 final size:35
Alignment explanation
Indices: 50988968--50989035 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
50988958 AAAGCCTACT
* * *
50988968 GAATCTTAATTTGATTAATATTAGTATAATTGTCA
1 GAATCTTAACTTAATTAATATTAGCATAATTGTCA
**
50989003 GAATCTTAACTTAATTTGTATTAGCATAATTGT
1 GAATCTTAACTTAATTAATATTAGCATAATTGT
50989036 TAATATAAGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.46
Consensus pattern (35 bp):
GAATCTTAACTTAATTAATATTAGCATAATTGTCA
Found at i:50989968 original size:15 final size:16
Alignment explanation
Indices: 50989948--50989977 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
50989938 TGATTTTTCT
50989948 AAAAAAGAAA-TAAAA
1 AAAAAAGAAACTAAAA
50989963 AAAAAAGAAACTAAA
1 AAAAAAGAAACTAAA
50989978 CAATTTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.83, C:0.03, G:0.07, T:0.07
Consensus pattern (16 bp):
AAAAAAGAAACTAAAA
Found at i:50995169 original size:30 final size:30
Alignment explanation
Indices: 50995133--50995192 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
50995123 AATAATCTTC
50995133 TAATTAAACTCTGTTTATTTGTTTCAATCA
1 TAATTAAACTCTGTTTATTTGTTTCAATCA
50995163 TAATTAAACTCTGTTTATTTGTTTCAATCA
1 TAATTAAACTCTGTTTATTTGTTTCAATCA
50995193 AACTCTGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.50
Consensus pattern (30 bp):
TAATTAAACTCTGTTTATTTGTTTCAATCA
Found at i:51002969 original size:14 final size:15
Alignment explanation
Indices: 51002952--51002985 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
51002942 TTAAATGCTG
51002952 AAAAAA-TAAATATT
1 AAAAAAGTAAATATT
*
51002966 AAAAAAGTAAGTATT
1 AAAAAAGTAAATATT
51002981 AAAAA
1 AAAAA
51002986 TTTAAAGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (15 bp):
AAAAAAGTAAATATT
Found at i:51005632 original size:18 final size:18
Alignment explanation
Indices: 51005609--51005676 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
51005599 AATAAAATCT
*
51005609 TTAAAAGACAATATAATA
1 TTAAAAGAAAATATAATA
* *
51005627 TTAAAATAAAATAAAATA
1 TTAAAAGAAAATATAATA
* * *
51005645 TTTAAAAGATAATATTATT
1 -TTAAAAGAAAATATAATA
*
51005664 TTAAAATAAAATA
1 TTAAAAGAAAATA
51005677 AAATTTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
18 26 0.67
19 13 0.33
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (18 bp):
TTAAAAGAAAATATAATA
Found at i:51005649 original size:37 final size:37
Alignment explanation
Indices: 51005596--51005680 Score: 134
Period size: 37 Copynumber: 2.3 Consensus size: 37
51005586 GTTTATTTCC
*
51005596 TAAAATAAAATCTTTAAAAGACAATATAATATTAAAA
1 TAAAATAAAATATTTAAAAGACAATATAATATTAAAA
* * *
51005633 TAAAATAAAATATTTAAAAGATAATATTATTTTAAAA
1 TAAAATAAAATATTTAAAAGACAATATAATATTAAAA
51005670 TAAAATAAAAT
1 TAAAATAAAAT
51005681 TTGAAAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (37 bp):
TAAAATAAAATATTTAAAAGACAATATAATATTAAAA
Found at i:51005656 original size:16 final size:15
Alignment explanation
Indices: 51005634--51005676 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
51005624 ATATTAAAAT
51005634 AAAATAAAATATTTA
1 AAAATAAAATATTTA
* *
51005649 AAAGATAATATTATTTT
1 AAA-ATAA-AATATTTA
51005666 AAAATAAAATA
1 AAAATAAAATA
51005677 AAATTTGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 6 0.26
16 8 0.35
17 9 0.39
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (15 bp):
AAAATAAAATATTTA
Found at i:51008692 original size:17 final size:16
Alignment explanation
Indices: 51008662--51008696 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
51008652 ACTCTTAGTA
*
51008662 ATTTTTTTGAATTTTT
1 ATTTTTTTAAATTTTT
51008678 ATTTTTTTAATATTTTT
1 ATTTTTTTAA-ATTTTT
51008695 AT
1 AT
51008697 AAATTTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (16 bp):
ATTTTTTTAAATTTTT
Found at i:51009887 original size:5 final size:5
Alignment explanation
Indices: 51009876--51009927 Score: 50
Period size: 5 Copynumber: 9.6 Consensus size: 5
51009866 AAATAGAAAG
* *
51009876 ATTTT GTTTT GTTTT ATTTT ATTTTT ATTTT ATTATTT ATATTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT A-TTTT ATTTT A-T-TTT AT-TTT ATTTT
51009925 ATT
1 ATT
51009928 AATTTAGGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 25 0.60
6 13 0.31
7 4 0.10
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:51009920 original size:18 final size:19
Alignment explanation
Indices: 51009893--51009933 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
51009883 TTTGTTTTAT
*
51009893 TTTATTTTTATTTTATT-A
1 TTTATATTTATTTTATTAA
51009911 TTTATATTTATTTTATTAA
1 TTTATATTTATTTTATTAA
51009930 TTTA
1 TTTA
51009934 GGTTAGGCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTATATTTATTTTATTAA
Found at i:51010786 original size:16 final size:16
Alignment explanation
Indices: 51010765--51010816 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
51010755 AAATCCCAAT
51010765 TTAATTTTTTATTTAG
1 TTAATTTTTTATTTAG
*
51010781 TTAATTATTTATCTTAG
1 TTAATTTTTTAT-TTAG
*
51010798 -CAATTTTAATTATTTAG
1 TTAATTTT--TTATTTAG
51010815 TT
1 TT
51010817 TCTACTTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
16 16 0.57
17 8 0.29
18 4 0.14
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.62
Consensus pattern (16 bp):
TTAATTTTTTATTTAG
Found at i:51013694 original size:118 final size:118
Alignment explanation
Indices: 51013532--51013766 Score: 407
Period size: 118 Copynumber: 2.0 Consensus size: 118
51013522 TATTTCCGGT
* *
51013532 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTAACACGAAGTAGAATGACAACCCAAGCAC
51013597 CCTACCCCGGTTACTCAGTCAATCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACCCCGGTTACTCAGTCAATCACGATTTGAGCCATACTCATAACCTCGGC
****
51013650 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTAACACGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTAACACGAAGTAGAATGACAACCCAAGCAC
*
51013715 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGG
66 CCTACCCCGGTTACTCAGTCAATCACGATTTGAGCCATACTCATAACCTCGG
51013767 AAAACATTTA
Statistics
Matches: 110, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
118 110 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (118 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTAACACGAAGTAGAATGACAACCCAAGCAC
CCTACCCCGGTTACTCAGTCAATCACGATTTGAGCCATACTCATAACCTCGGC
Found at i:51014622 original size:40 final size:42
Alignment explanation
Indices: 51014544--51014652 Score: 143
Period size: 41 Copynumber: 2.6 Consensus size: 42
51014534 GGTTTTGGGG
* *
51014544 ATTCTAAGGCT-GAATAGGACTGTTTGGCTGCAGAGATAT-GC
1 ATTCT-AGGCTGGAATAGAACTGTTTGGCAGCAGAGATATGGC
*
51014585 ATTCTGGGCTGGAATAGAACTGTTTGGCAGCAG-GATATGGC
1 ATTCTAGGCTGGAATAGAACTGTTTGGCAGCAGAGATATGGC
* *
51014626 ATTTTAGGTTGGAATAGAACTGTTTGG
1 ATTCTAGGCTGGAATAGAACTGTTTGG
51014653 TACCATGGAT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
40 9 0.15
41 51 0.85
ACGTcount: A:0.26, C:0.12, G:0.31, T:0.31
Consensus pattern (42 bp):
ATTCTAGGCTGGAATAGAACTGTTTGGCAGCAGAGATATGGC
Found at i:51014775 original size:8 final size:8
Alignment explanation
Indices: 51014764--51014801 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
51014754 ATTTAAATAA
51014764 AATAAAAT
1 AATAAAAT
51014772 AATAAAAT
1 AATAAAAT
51014780 AAT-AAAT
1 AATAAAAT
51014787 AAT-AAAT
1 AATAAAAT
51014794 AAATAAAA
1 -AATAAAA
51014802 ATAAAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 11 0.39
8 14 0.50
9 3 0.11
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:51014788 original size:7 final size:7
Alignment explanation
Indices: 51014768--51014812 Score: 58
Period size: 8 Copynumber: 6.4 Consensus size: 7
51014758 AAATAAAATA
51014768 AAATAAT
1 AAATAAT
51014775 AAAATAAT
1 -AAATAAT
51014783 AAATAAT
1 AAATAAT
51014790 AAATAAAT
1 AAAT-AAT
51014798 AAA-AAT
1 AAATAAT
51014804 AAA-AAT
1 AAATAAT
51014810 AAA
1 AAA
51014813 GATTGGGTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
6 12 0.33
7 11 0.31
8 13 0.36
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (7 bp):
AAATAAT
Found at i:51014788 original size:15 final size:15
Alignment explanation
Indices: 51014759--51014807 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
51014749 TTAATATTTA
51014759 AATAAAAT-A-AAAT
1 AATAAAATAATAAAT
51014772 AATAAAATAATAAAT
1 AATAAAATAATAAAT
51014787 AAT-AAATAAATAAA-
1 AATAAAAT-AATAAAT
51014801 AATAAAA
1 AATAAAA
51014808 ATAAAGATTG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (15 bp):
AATAAAATAATAAAT
Found at i:51014794 original size:11 final size:11
Alignment explanation
Indices: 51014780--51014812 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
51014770 ATAATAAAAT
51014780 AATAAATAATA
1 AATAAATAATA
51014791 AATAAATAA-A
1 AATAAATAATA
51014801 AATAAA-AATA
1 AATAAATAATA
51014811 AA
1 AA
51014813 GATTGGGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.10
10 10 0.48
11 9 0.43
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
AATAAATAATA
Found at i:51021928 original size:5 final size:5
Alignment explanation
Indices: 51021914--51021959 Score: 56
Period size: 5 Copynumber: 8.6 Consensus size: 5
51021904 AAATAGAAAG
*
51021914 ATTTT ATTTT GTTTT ATTTT ATTATTT ATATTT ATTTT ATTTT ATT
1 ATTTT ATTTT ATTTT ATTTT A-T-TTT AT-TTT ATTTT ATTTT ATT
51021960 AATTTAGGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
5 25 0.68
6 8 0.22
7 4 0.11
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:51024237 original size:26 final size:26
Alignment explanation
Indices: 51024201--51024252 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
51024191 CACCACTGAA
* *
51024201 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
51024227 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
51024253 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:51024329 original size:70 final size:71
Alignment explanation
Indices: 51024213--51024363 Score: 241
Period size: 72 Copynumber: 2.1 Consensus size: 71
51024203 GGGGAATCAT
*
51024213 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTT-CATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
51024277 ATATCG
66 ATATCG
* ***
51024283 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATG
51024348 GATATCG
65 GATATCG
51024355 CACTTAGCA
1 CACTTAGCA
51024364 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 16 0.22
71 28 0.38
72 30 0.41
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
ATATCG
Found at i:51024406 original size:104 final size:104
Alignment explanation
Indices: 51024282--51024505 Score: 371
Period size: 104 Copynumber: 2.2 Consensus size: 104
51024272 AATGGATATC
51024282 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
*
51024347 GGAT-ATCGCACT-TAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCA-TATAGCACCACCAATAAACCGGGGAATCA
51024386 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
51024451 GGATCACGCATATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCATATAGCACCACCAATAAACCGGGGAATCA
**
51024490 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
51024506 TTTATATACA
Statistics
Matches: 113, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
103 1 0.01
104 111 0.98
105 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCATATAGCACCACCAATAAACCGGGGAATCA
Found at i:51024867 original size:29 final size:29
Alignment explanation
Indices: 51024834--51024897 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
51024824 TAATCCACCA
51024834 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
51024863 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
51024893 CCCAA
1 CCCAA
51024898 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:51024871 original size:30 final size:30
Alignment explanation
Indices: 51024841--51024897 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
51024831 CCACCCAACT
51024841 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
51024870 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
51024898 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:51029447 original size:169 final size:169
Alignment explanation
Indices: 51029154--51029491 Score: 496
Period size: 169 Copynumber: 2.0 Consensus size: 169
51029144 CCTTCAATAG
* * * * * *
51029154 TAACCCACAAGACCCAAAAAACTACGGATCTTAGAAACATTCCTAGGTTGTTTCCAATCAAGTAC
1 TAACCCACAAGACCCAAAAAAATACAGATCTCAAAAACATTCCTAGGCTGTTTCCAATCAAGCAC
* *
51029219 AGCCTCAATCTTTCTAGGATCAACTCAGATCCATTCAGCAAAAACTACGTACCCTAGAAATGTTA
66 AGCCTCAACCTTTCTAGGATCAACTCAGATCCATTCAGCAAAAACTACGTACACTAGAAATGTTA
* * * *
51029284 TTTCCTGTAATCATAATTCACATTTGCTCAACTTAGCGT
131 TTTCCCGTAACCAGAATTCACATTTACTCAACTTAGCGT
* * ** *
51029323 TAACCCGCAAGACCCAAAAAAATGCAGATCTCAAAAAGGTTCCTAGGCTGTTTCCTATCAAGCAC
1 TAACCCACAAGACCCAAAAAAATACAGATCTCAAAAACATTCCTAGGCTGTTTCCAATCAAGCAC
* * *
51029388 GGCCTCAACCTTTCTAGGATCAACTCAGATCCATTCAGTAGAAACTACGTACACTAGAAATGTTA
66 AGCCTCAACCTTTCTAGGATCAACTCAGATCCATTCAGCAAAAACTACGTACACTAGAAATGTTA
51029453 TTTCCCGTAACCAGAATTCACATTTACTCAACTTAGCGT
131 TTTCCCGTAACCAGAATTCACATTTACTCAACTTAGCGT
51029492 AAAGCTACTT
Statistics
Matches: 149, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
169 149 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (169 bp):
TAACCCACAAGACCCAAAAAAATACAGATCTCAAAAACATTCCTAGGCTGTTTCCAATCAAGCAC
AGCCTCAACCTTTCTAGGATCAACTCAGATCCATTCAGCAAAAACTACGTACACTAGAAATGTTA
TTTCCCGTAACCAGAATTCACATTTACTCAACTTAGCGT
Found at i:51030519 original size:27 final size:27
Alignment explanation
Indices: 51030489--51030551 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
51030479 ACGGATTAGT
*
51030489 ACAATAATCTCATCAGAAGTACACTCA
1 ACAATAATCTCACCAGAAGTACACTCA
* *
51030516 ACAATAATCTGACCGGAAGTACACTCA
1 ACAATAATCTCACCAGAAGTACACTCA
51030543 ACAATAATC
1 ACAATAATC
51030552 CCTAAGTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.44, C:0.25, G:0.10, T:0.21
Consensus pattern (27 bp):
ACAATAATCTCACCAGAAGTACACTCA
Found at i:51037069 original size:31 final size:31
Alignment explanation
Indices: 51037031--51037090 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
51037021 TTAAGTGTAA
** *
51037031 AATCAAATAATTACGGTACAAATACATTAAG
1 AATCAAATAATTACAATACAAATAAATTAAG
*
51037062 AATCAAATTATTACAATACAAATAAATTA
1 AATCAAATAATTACAATACAAATAAATTA
51037091 TAAAGTAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.55, C:0.12, G:0.05, T:0.28
Consensus pattern (31 bp):
AATCAAATAATTACAATACAAATAAATTAAG
Found at i:51041285 original size:16 final size:18
Alignment explanation
Indices: 51041249--51041286 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
51041239 ATTCGATACG
*
51041249 TGTTTGTATATGTTAGCA
1 TGTTTGTATATGATAGCA
51041267 TGTTTGTATAT-AT-GCA
1 TGTTTGTATATGATAGCA
51041283 TGTT
1 TGTT
51041287 ATGAGTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 11 0.58
ACGTcount: A:0.21, C:0.05, G:0.21, T:0.53
Consensus pattern (18 bp):
TGTTTGTATATGATAGCA
Found at i:51047127 original size:39 final size:39
Alignment explanation
Indices: 51047073--51047184 Score: 170
Period size: 39 Copynumber: 2.8 Consensus size: 39
51047063 ACATGATACT
51047073 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
*
51047112 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
* * * *
51047151 TGGAAATATATCCGGGCTTAAAGTCCCGCAGGCT
1 TGGAAACATATCCGGACTTGAGGT-CCGCAGGCT
51047185 TTTTGCTAGA
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 58 0.87
40 9 0.13
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.22
Consensus pattern (39 bp):
TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
Found at i:51048685 original size:19 final size:19
Alignment explanation
Indices: 51048661--51048698 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
51048651 TCTTTTGTAT
51048661 ATGATAATACTCTTTAACC
1 ATGATAATACTCTTTAACC
51048680 ATGATAATACTCTTTAACC
1 ATGATAATACTCTTTAACC
51048699 CTCCGGCGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.05, T:0.37
Consensus pattern (19 bp):
ATGATAATACTCTTTAACC
Found at i:51049777 original size:117 final size:119
Alignment explanation
Indices: 51049512--51049785 Score: 383
Period size: 121 Copynumber: 2.3 Consensus size: 119
51049502 TAGAAAGGGA
* *
51049512 AAGTATCCAAAGTCCTAACAAAACATAATTATACAATTACAAGTCATGCACATCATCTAATATAG
1 AAGTATCCAAAGTCCTAACAAAACCTAATTATACAATTACAAGTCATGCACATCATCTAAGATAG
* * *
51049577 GTAATGTATCCAAGAAAGGTTCAAAATATAATATTATCAAAGAAAGTTCAAAGAGG
66 GTAATGTA--CAAGAAAAGTTCAAAATATAATACTACCAAAGAAAGTTCAAAGAGG
* * *
51049633 AAGTATCCAAAGTCCTAACAAAACCTAATTATACAATTACAAGTCATGCATATCATCTCAGATTG
1 AAGTATCCAAAGTCCTAACAAAACCTAATTATACAATTACAAGTCATGCACATCATCTAAGATAG
* *
51049698 GTAATGTA-AAGAAAAGTTC-AAATATAATACTACC-ATGAAAAGTTCAAAGATG
66 GTAATGTACAAGAAAAGTTCAAAATATAATACTACCAAAG-AAAGTTCAAAGAGG
* * *
51049750 AAGTATTCAAAGTTCTACCAAAACCTAATTATACAA
1 AAGTATCCAAAGTCCTAACAAAACCTAATTATACAA
51049786 AGCCCAAGAA
Statistics
Matches: 139, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
116 2 0.01
117 59 0.42
118 10 0.07
121 68 0.49
ACGTcount: A:0.46, C:0.16, G:0.11, T:0.26
Consensus pattern (119 bp):
AAGTATCCAAAGTCCTAACAAAACCTAATTATACAATTACAAGTCATGCACATCATCTAAGATAG
GTAATGTACAAGAAAAGTTCAAAATATAATACTACCAAAGAAAGTTCAAAGAGG
Found at i:51055461 original size:3 final size:3
Alignment explanation
Indices: 51055453--51055486 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
51055443 ACAAATTAAA
*
51055453 AAT AAT AAT ATT AAT AAT AAT -AT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
51055487 ATTTAAAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:51055543 original size:17 final size:17
Alignment explanation
Indices: 51055514--51055555 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 17
51055504 TATATAAAAG
51055514 GATATAAATAAATAAAT
1 GATATAAATAAATAAAT
51055531 GATA-AAATAAAATAAAT
1 GATATAAAT-AAATAAAT
51055548 GTATATAA
1 G-ATATAA
51055556 GAAAAAAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 4 0.18
17 13 0.59
18 3 0.14
19 2 0.09
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (17 bp):
GATATAAATAAATAAAT
Found at i:51055643 original size:3 final size:3
Alignment explanation
Indices: 51055627--51055667 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
51055617 ACTATTGATT
*
51055627 TAA TAA T-A TGA TAA TAA TAA TAA TAA TAA TAA GTAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA
51055668 AGAAGGGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
2 4 0.12
3 27 0.79
4 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:51058559 original size:20 final size:21
Alignment explanation
Indices: 51058536--51058574 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
51058526 TGAGATTAAT
*
51058536 GAGGATT-TTTAAAATTTTGA
1 GAGGATTAATTAAAATTTTGA
*
51058556 GAGGCTTAATTAAAATTTT
1 GAGGATTAATTAAAATTTT
51058575 TTAAAATTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.36, C:0.03, G:0.18, T:0.44
Consensus pattern (21 bp):
GAGGATTAATTAAAATTTTGA
Found at i:51058898 original size:21 final size:21
Alignment explanation
Indices: 51058872--51058914 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
51058862 TTTCCAAGTA
51058872 TATTTA-CGGAAATGGACCGAT
1 TATTTACCGGAAA-GGACCGAT
*
51058893 TATTTACCGGAAAGGGCCGAT
1 TATTTACCGGAAAGGACCGAT
51058914 T
1 T
51058915 TTGGCAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (21 bp):
TATTTACCGGAAAGGACCGAT
Found at i:51059192 original size:21 final size:22
Alignment explanation
Indices: 51059168--51059210 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
51059158 GTTTTACTAA
51059168 AATAATCTA-GGTTTAGAGTTT
1 AATAATCTAGGGTTTAGAGTTT
* *
51059189 AATAATTTAGGGTTTAGGGTTT
1 AATAATCTAGGGTTTAGAGTTT
51059211 TCTACAGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.44
Consensus pattern (22 bp):
AATAATCTAGGGTTTAGAGTTT
Found at i:51059429 original size:122 final size:124
Alignment explanation
Indices: 51059208--51059470 Score: 381
Period size: 122 Copynumber: 2.1 Consensus size: 124
51059198 GGGTTTAGGG
* *
51059208 TTTTCTACAGTAATTCCTAAAAAATAATTTTGAGAAGACGTTTTTGAACAAAGAGTGTAAAAAAC
1 TTTTCTACAGTAGTTCCTAAAAAATAA-TTTGAGAAGACGTTTCTGAACAAAGAGTGTAAAAAAC
* * *
51059273 GCTTTAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAATA-CTCCCACGTGGACACTAT
65 GCTTAAAGCAGAATCCACTGTCAGCAAAAGTACTAAAAAA-AGCTCCCACGTGGACACTAT
*
51059333 TTTTCTACAGTAGTTCCTAAAAAA-AA-TTGAGAAGACGTTTCTGAACAAATAGTGTAAAAAACG
1 TTTTCTACAGTAGTTCCTAAAAAATAATTTGAGAAGACGTTTCTGAACAAAGAGTGTAAAAAACG
* * * *
51059396 CTTCAAAG-AGAATCCACTGTCAGTAAAATTACTAAAAAAAGCTCCCACGTGGACGCTCT
66 CTT-AAAGCAGAATCCACTGTCAGCAAAAGTACTAAAAAAAGCTCCCACGTGGACACTAT
51059455 TTTTCTACAGTAGTTC
1 TTTTCTACAGTAGTTC
51059471 ATGTTTGGCC
Statistics
Matches: 126, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
121 1 0.01
122 97 0.77
123 3 0.02
124 2 0.02
125 23 0.18
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.28
Consensus pattern (124 bp):
TTTTCTACAGTAGTTCCTAAAAAATAATTTGAGAAGACGTTTCTGAACAAAGAGTGTAAAAAACG
CTTAAAGCAGAATCCACTGTCAGCAAAAGTACTAAAAAAAGCTCCCACGTGGACACTAT
Found at i:51062871 original size:27 final size:27
Alignment explanation
Indices: 51062831--51062919 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 27
51062821 CCATCAACGA
*
51062831 TGGT-AATATAATCGGCACACAG-CAC
1 TGGTAAATATGATCGGCACACAGCCAC
* * *
51062856 TGGGTAAATATGATCGACACAGAGTCA-
1 T-GGTAAATATGATCGGCACACAGCCAC
* * *
51062883 TCGATAAATATGATAGGCACATAGCCAC
1 T-GGTAAATATGATCGGCACACAGCCAC
51062911 TGGTAAATA
1 TGGTAAATA
51062920 CGATTTGCAC
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
25 1 0.02
26 3 0.06
27 43 0.86
28 3 0.06
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.22
Consensus pattern (27 bp):
TGGTAAATATGATCGGCACACAGCCAC
Found at i:51063381 original size:27 final size:26
Alignment explanation
Indices: 51063362--51063446 Score: 107
Period size: 27 Copynumber: 3.2 Consensus size: 26
51063352 GGTATTTTAG
*
51063362 TAATTTTACAAATTGAGGGTATTTCGA
1 TAATTTTACAAATCG-GGGTATTTCGA
*
51063389 TAATTTCACAAATCGGAGGTATTTCGA
1 TAATTTTACAAATCGG-GGTATTTCGA
* *
51063416 TAATTTTACAAACCGGGGGTATTTCAA
1 TAATTTTACAAATC-GGGGTATTTCGA
51063443 TAAT
1 TAAT
51063447 CTAAACAGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
26 1 0.02
27 48 0.94
28 2 0.04
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (26 bp):
TAATTTTACAAATCGGGGTATTTCGA
Found at i:51063673 original size:18 final size:18
Alignment explanation
Indices: 51063652--51063687 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
51063642 AAAGTTTGTC
51063652 ACTAATCGAGGATTTTAT
1 ACTAATCGAGGATTTTAT
51063670 ACTAATCGAGGATTTTAT
1 ACTAATCGAGGATTTTAT
51063688 CCGTGCGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (18 bp):
ACTAATCGAGGATTTTAT
Found at i:51064813 original size:24 final size:24
Alignment explanation
Indices: 51064785--51064848 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
51064775 CTCATTAAAT
*
51064785 CTCTCCATAAATCACTC-ATTGATT
1 CTCTCCATAAATCACTCTA-TGATA
* *
51064809 TTCTCC-TAATATCTCTCTATGATA
1 CTCTCCATAA-ATCACTCTATGATA
*
51064833 CACTCCATAAATCACT
1 CTCTCCATAAATCACT
51064849 TCAACCTCTC
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
23 3 0.10
24 24 0.77
25 4 0.13
ACGTcount: A:0.30, C:0.30, G:0.03, T:0.38
Consensus pattern (24 bp):
CTCTCCATAAATCACTCTATGATA
Found at i:51065960 original size:14 final size:14
Alignment explanation
Indices: 51065924--51065954 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
51065914 TATTAGTTAT
*
51065924 ATACATAATACTAA
1 ATACAAAATACTAA
51065938 ATACAAAATACTAA
1 ATACAAAATACTAA
51065952 ATA
1 ATA
51065955 TGAAATGACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (14 bp):
ATACAAAATACTAA
Found at i:51066914 original size:18 final size:19
Alignment explanation
Indices: 51066870--51066915 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
51066860 ACAGACTGTT
*
51066870 ATAAAAAATTATAAAATAC
1 ATAAATAATTATAAAATAC
* *
51066889 A-AATTAATTA-AAATTAC
1 ATAAATAATTATAAAATAC
51066906 ATAAATAATT
1 ATAAATAATT
51066916 TTTTTTTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
17 7 0.32
18 14 0.64
19 1 0.05
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAATAATTATAAAATAC
Found at i:51067136 original size:21 final size:21
Alignment explanation
Indices: 51067112--51067156 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
51067102 TTTTAAGAAA
*
51067112 TTTAATGAGAAATTTGAGAGC
1 TTTAAGGAGAAATTTGAGAGC
*
51067133 TTTAGGGAGAAATTTGAGAGC
1 TTTAAGGAGAAATTTGAGAGC
51067154 TTT
1 TTT
51067157 TTTGCTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.36
Consensus pattern (21 bp):
TTTAAGGAGAAATTTGAGAGC
Found at i:51081213 original size:15 final size:15
Alignment explanation
Indices: 51081193--51081222 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
51081183 TGTTAAAAAA
51081193 TGGATAATTTTGTTG
1 TGGATAATTTTGTTG
51081208 TGGATAATTTTGTTG
1 TGGATAATTTTGTTG
51081223 GTTCATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (15 bp):
TGGATAATTTTGTTG
Found at i:51081356 original size:17 final size:16
Alignment explanation
Indices: 51081294--51081370 Score: 59
Period size: 17 Copynumber: 4.7 Consensus size: 16
51081284 ATAATCAATT
51081294 AATATTTTTTATATTTA
1 AATATTTTTTATA-TTA
*
51081311 AAT-TTATTTA-ATCTA
1 AATATTTTTTATAT-TA
* **
51081326 ATTCATTTGATATATTCA
1 AAT-ATTTTTTATATT-A
*
51081344 ATTATTTTTTATATTA
1 AATATTTTTTATATTA
51081360 AATATTTTTTA
1 AATATTTTTTA
51081371 AAAACATCGA
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
14 1 0.02
15 5 0.11
16 17 0.36
17 18 0.38
18 6 0.13
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (16 bp):
AATATTTTTTATATTA
Found at i:51089603 original size:13 final size:13
Alignment explanation
Indices: 51089587--51089611 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51089577 TTTAAACCAA
51089587 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
51089600 ACTTTTCAAAAG
1 ACTTTTCAAAAG
51089612 TATTGCCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:51090338 original size:15 final size:17
Alignment explanation
Indices: 51090313--51090350 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
51090303 TCAATTACTT
*
51090313 CATACATATATTT-TTA
1 CATAAATATATTTATTA
51090329 -ATAAATATATTTATTA
1 CATAAATATATTTATTA
51090345 CATAAA
1 CATAAA
51090351 AAAAATTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 11 0.58
16 3 0.16
17 5 0.26
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (17 bp):
CATAAATATATTTATTA
Found at i:51090851 original size:53 final size:53
Alignment explanation
Indices: 51090757--51090863 Score: 128
Period size: 52 Copynumber: 2.0 Consensus size: 53
51090747 AACACGGCTC
*** *
51090757 TAAAATGTAAAATTATTATTTAAATTTTTAATTTTTTTAAAAAATTTAAATTAA
1 TAAAATGTAAAATTATTATTTAAATTTTTAAAAATTAT-AAAAATTTAAATTAA
* *
51090811 TAAAA-GTAAAATTA-TATTTAATTTTTTTAAAAATTATAAAAATTTAATTTAA
1 TAAAATGTAAAATTATTATTTAA-ATTTTTAAAAATTATAAAAATTTAAATTAA
51090863 T
1 T
51090864 TTTTTAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
52 22 0.48
53 19 0.41
54 5 0.11
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.49
Consensus pattern (53 bp):
TAAAATGTAAAATTATTATTTAAATTTTTAAAAATTATAAAAATTTAAATTAA
Found at i:51090853 original size:31 final size:30
Alignment explanation
Indices: 51090818--51090883 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
51090808 TAATAAAAGT
51090818 AAAA-TTATATTTAATTTTTTTAAAAATTATA
1 AAAATTTA-ATTTAA-TTTTTTAAAAATTATA
51090849 AAAATTTAATTTAATTTTTTAAAAATTATA
1 AAAATTTAATTTAATTTTTTAAAAATTATA
51090879 AAAAT
1 AAAAT
51090884 ATAGAATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
30 21 0.62
31 10 0.29
32 3 0.09
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (30 bp):
AAAATTTAATTTAATTTTTTAAAAATTATA
Found at i:51095550 original size:33 final size:33
Alignment explanation
Indices: 51095495--51095604 Score: 80
Period size: 33 Copynumber: 3.3 Consensus size: 33
51095485 TAGTCCAACT
** * * *
51095495 ATGGTCTTACACATATATTGCCATGACCCTGCC
1 ATGGTCTTACATTTATAGTGCCATAACCCAGCC
* **
51095528 ATGGTCTTACATTTGTAGTGCCATAACCCAGTT
1 ATGGTCTTACATTTATAGTGCCATAACCCAGCC
* * * *
51095561 ATGGTCTTATCA-TTA-GGATGTCATAGCCCAGCT
1 ATGGTCTTA-CATTTATAG-TGCCATAACCCAGCC
51095594 ATGGTCTTACA
1 ATGGTCTTACA
51095605 CATATATTTA
Statistics
Matches: 62, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
32 3 0.05
33 57 0.92
34 2 0.03
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.34
Consensus pattern (33 bp):
ATGGTCTTACATTTATAGTGCCATAACCCAGCC
Found at i:51098655 original size:46 final size:46
Alignment explanation
Indices: 51098588--51098713 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
51098578 TGTAACCCGC
* * * *
51098588 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
51098634 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
51098680 CCATAAGTGAACTCGGACTTAACTCAACGAGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC
51098714 AGATGCCCAA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:51103532 original size:22 final size:23
Alignment explanation
Indices: 51103507--51103571 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 23
51103497 TATTGAAAAT
*
51103507 ACATGTTCATAATATATA-TAAA
1 ACATATTCATAATATATATTAAA
51103529 ACATATAT-ATAATATAATATTAAA
1 ACATAT-TCATAATAT-ATATTAAA
* *
51103553 ACGTTTTACATAATATATA
1 ACATATT-CATAATATATA
51103572 CACATATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 11 0.31
25 7 0.20
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (23 bp):
ACATATTCATAATATATATTAAA
Found at i:51103646 original size:21 final size:23
Alignment explanation
Indices: 51103616--51103661 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
51103606 ATTAATAATA
51103616 ATACTAATAT-TACA-TAAAGAT
1 ATACTAATATATACATTAAAGAT
* *
51103637 ATACTTATATATATATTAAAGAT
1 ATACTAATATATACATTAAAGAT
51103660 AT
1 AT
51103662 GTGCATATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 9 0.43
22 3 0.14
23 9 0.43
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (23 bp):
ATACTAATATATACATTAAAGAT
Found at i:51103945 original size:12 final size:12
Alignment explanation
Indices: 51103928--51103959 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
51103918 AACAATATTG
51103928 AAACACAAAAAC
1 AAACACAAAAAC
51103940 AAACACAAAAAC
1 AAACACAAAAAC
*
51103952 AAATACAA
1 AAACACAA
51103960 TAAAGATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.75, C:0.22, G:0.00, T:0.03
Consensus pattern (12 bp):
AAACACAAAAAC
Found at i:51104016 original size:8 final size:8
Alignment explanation
Indices: 51104003--51104040 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
51103993 CTATACGTAA
*
51104003 ATATATAT
1 ATATATAC
51104011 ATATATAC
1 ATATATAC
51104019 ATATATAC
1 ATATATAC
*
51104027 ATA-AAAC
1 ATATATAC
51104034 ATATATA
1 ATATATA
51104041 AACATTGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (8 bp):
ATATATAC
Found at i:51117507 original size:22 final size:23
Alignment explanation
Indices: 51117482--51117546 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 23
51117472 TATTGAAAAT
*
51117482 ACATGTTCATAATATATA-TAAA
1 ACATATTCATAATATATATTAAA
51117504 ACATATAT-ATAATATAATATTAAA
1 ACATAT-TCATAATAT-ATATTAAA
* *
51117528 ACGTTTTACATAATATATA
1 ACATATT-CATAATATATA
51117547 CACATATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 11 0.31
25 7 0.20
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (23 bp):
ACATATTCATAATATATATTAAA
Found at i:51119823 original size:73 final size:74
Alignment explanation
Indices: 51119657--51120230 Score: 650
Period size: 73 Copynumber: 7.5 Consensus size: 74
51119647 ACGTGAGCTA
** * *
51119657 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAAACATTAATTAAAAATACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG----AAAAAACAGAAATTGAAAATACC
* * *
51119722 TTAGCGTGCCCCG
62 TCAGCGTGTCCTG
* * *
51119735 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTG-AAAAATAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATTGAAAATACCTCAG
51119799 CGTGTCCTG
66 CGTGTCCTG
* **
51119808 AAGCTCAACTCACCTCTCGCAACGTGAGTTGATCTTTTTGAAAAAACAGAAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAAACAGAAATTGAAAATACCTC
* *
51119873 GGCGTGTGACCCG
64 AGCGTGT--CCTG
* ** *
51119886 AGGCTCAACTCACCTCTCGTAACGTGAGTTGATCTTTTTGAAAAAATAGAAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAAACAGAAATTGAAAATACCTC
*
51119951 GGCGTGTCCTG
64 AGCGTGTCCTG
*
51119962 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAAACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATTGAAAATACCTCAG
51120026 CGTGTCCTG
66 CGTGTCCTG
*
51120035 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG------A-AAA---AACAGAAATTGAA
* *
51120100 AATACCTCAACGTGTCTTG
56 AATACCTCAGCGTGTCCTG
* *
51120119 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTCTTG-AAAAGCAGAAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-TTGAAAAAACAGAAATTGAAAATACCTC
** *
51120183 AATGTGTCTTG
64 AGCGTGTCCTG
* *
51120194 AGGCTCAACTCACCTATCGTAATATGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
51120231 TCGAAACAGA
Statistics
Matches: 439, Mismatches: 39, Indels: 41
0.85 0.08 0.08
Matches are distributed among these distances:
73 126 0.29
74 9 0.02
75 64 0.15
76 60 0.14
78 112 0.26
81 3 0.01
84 59 0.13
85 3 0.01
86 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (74 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATTGAAAATACCTCAG
CGTGTCCTG
Found at i:51119981 original size:227 final size:225
Alignment explanation
Indices: 51119657--51120230 Score: 699
Period size: 227 Copynumber: 2.5 Consensus size: 225
51119647 ACGTGAGCTA
* *
51119657 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAAAAAACATTAATTAAAAATAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG--AAAAAAAAGA--AATTGAAAATAC
* * * * * *
51119721 ATTAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAAATT
62 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT
*
51119786 GAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAACGTGAGTTGATCTTTTTG-A-
127 GAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAACATGAGTTGA--TTTTTGAAT
**
51119849 AAA-AACAGAAATTGAAAATACCTCGGCGTGTGACCCG
190 AAATAACAGAAATTGAAAATACCTCAACGTGT--CCCG
* ** *
51119886 AGGCTCAACTCACCTCTCGTAACGTGAGTTGATCTTTTTGAAAAAATAGAAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTTGAAAAAAAAGAAATTGAAAATACCTC
*
51119951 GGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
65 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
* *
51120016 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAT
130 ATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTG----A-AT
* **
51120081 AAATTGAACAGGAATTGAAAATACCTCAACGTGTCTTG
190 AAA-T-AACAGAAATTGAAAATACCTCAACGTGTCCCG
* **
51120119 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTCTTG-AAAAGCAGAAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-TTGAAAAAAAAGAAATTGAAAATACCTC
** * * *
51120183 AATGTGTCTTGAGGCTCAACTCACCTATCGTAATATGAGTTGATTTTT
65 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
51120231 TCGAAACAGA
Statistics
Matches: 299, Mismatches: 33, Indels: 23
0.84 0.09 0.06
Matches are distributed among these distances:
225 6 0.02
227 120 0.40
229 37 0.12
231 7 0.02
232 70 0.23
233 34 0.11
235 25 0.08
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (225 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAAAGAAATTGAAAATACCTCA
GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAA
TTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAATAAATAA
CAGAAATTGAAAATACCTCAACGTGTCCCG
Found at i:51120149 original size:84 final size:75
Alignment explanation
Indices: 51120086--51120230 Score: 213
Period size: 75 Copynumber: 1.9 Consensus size: 75
51120076 AACATAAATT
* *
51120086 GAACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA
1 GAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
51120151 TTTTCTTGAAAA
66 -TTT-TTGAAAA
* * *
51120163 G--CAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTATCGTAATATGAGTTGA
1 GAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
51120226 TTTTT
66 TTTTT
51120231 TCGAAACAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
73 2 0.03
74 3 0.05
75 57 0.90
77 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31
Consensus pattern (75 bp):
GAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAA
Found at i:51120238 original size:159 final size:152
Alignment explanation
Indices: 51119657--51120243 Score: 638
Period size: 151 Copynumber: 3.8 Consensus size: 152
51119647 ACGTGAGCTA
** *
51119657 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAAAAAACATTAATTAAAAATAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-----AAAAACAGAAATTGAAAATAC
* * * * * * *
51119721 ATTAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG-GTTTTTG--A-AAAA-TAG
61 CTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTGAAACAAAATTAG
*
51119781 AAATTGAAATTACCTCAGCGTGTCCTG
126 AAATTGAAAATACCTCAGCGTGTCCTG
* **
51119808 AAGCTCAACTCACCTCTCGCAACGTGAGTTGATCTTTTTGAAAAAACAGAAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTTG-AAAAACAGAAATTGAAAATACCTC
* * * **
51119873 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGTAACGTGAGTTGATCTTTTTG-AA-AAAA-TAG
64 --AGTGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGAT-TTTTTGAAACAAAATTAG
*
51119935 AAATTGAAAATACCTCGGCGTGTCCTG
126 AAATTGAAAATACCTCAGCGTGTCCTG
*
51119962 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAG
* *
51120026 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACATAAATTGAAC
66 TGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTG--AAACA-AAATT----
* * *
51120090 AGGAATTGAAAATACCTCAACGTGTCTTG
124 AGAAATTGAAAATACCTCAGCGTGTCCTG
* *
51120119 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-TTGAAAAACAGAAATTGAAAATACCTCA
* * *
51120184 ATGTGTCTTGAGGCTCAACTCACCTATCGTAATATGAGTTGATTTTTTCGAAACAGAAAT
65 GTGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT-GAAACA-AAAT
51120244 AAAAACATCA
Statistics
Matches: 374, Mismatches: 41, Indels: 34
0.83 0.09 0.08
Matches are distributed among these distances:
147 6 0.02
149 56 0.15
150 2 0.01
151 89 0.24
152 9 0.02
153 13 0.03
154 62 0.17
157 56 0.15
158 3 0.01
159 72 0.19
160 5 0.01
161 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (152 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAG
TGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTGAAACAAAATTAGAAATT
GAAAATACCTCAGCGTGTCCTG
Found at i:51121137 original size:12 final size:12
Alignment explanation
Indices: 51121120--51121148 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
51121110 TCCTTTTTCG
51121120 GGTTTTCATCTT
1 GGTTTTCATCTT
51121132 GGTTTTCATCTT
1 GGTTTTCATCTT
51121144 GGTTT
1 GGTTT
51121149 CCTTTTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.14, G:0.21, T:0.59
Consensus pattern (12 bp):
GGTTTTCATCTT
Found at i:51124059 original size:11 final size:11
Alignment explanation
Indices: 51124040--51124069 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
51124030 GTTTGGAAAT
51124040 GATTCGACGAA
1 GATTCGACGAA
*
51124051 GATTTGACGAA
1 GATTCGACGAA
51124062 GATTCGAC
1 GATTCGAC
51124070 AGTTAGAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (11 bp):
GATTCGACGAA
Found at i:51128690 original size:33 final size:34
Alignment explanation
Indices: 51128610--51128696 Score: 92
Period size: 33 Copynumber: 2.6 Consensus size: 34
51128600 TGACTATATA
* *
51128610 AAATTTACAATAAATAAAAAAATATAAAATTTTATT
1 AAATTTA-AA-AAATAATATAATATAAAATTTTATT
51128646 AAATATT--AAAATAATATAATAT-AAATATTT-TT
1 AAAT-TTAAAAAATAATATAATATAAAAT-TTTATT
51128678 AAATTTAAAAAATAATATA
1 AAATTTAAAAAATAATATA
51128697 TACGAGTCTA
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
31 2 0.04
32 10 0.22
33 26 0.58
34 1 0.02
36 4 0.09
37 2 0.04
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (34 bp):
AAATTTAAAAAATAATATAATATAAAATTTTATT
Found at i:51131379 original size:31 final size:31
Alignment explanation
Indices: 51131288--51131380 Score: 89
Period size: 30 Copynumber: 3.0 Consensus size: 31
51131278 ATATTTTTAA
* * * *
51131288 TTTTTAAAATTTTAATTAGATTTTTCAAATT
1 TTTTTAAAATTTTAATTAAATCTATCAAAAT
** * * *
51131319 TTTTTAATTTTTTTATAAAATCTCT-AAAAT
1 TTTTTAAAATTTTAATTAAATCTATCAAAAT
*
51131349 TTTTTAAAGTTTTAATTAAATCTATCAAAAT
1 TTTTTAAAATTTTAATTAAATCTATCAAAAT
51131380 T
1 T
51131381 CGTGAAAGTT
Statistics
Matches: 48, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
30 24 0.50
31 24 0.50
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (31 bp):
TTTTTAAAATTTTAATTAAATCTATCAAAAT
Found at i:51131828 original size:9 final size:9
Alignment explanation
Indices: 51131816--51131858 Score: 59
Period size: 9 Copynumber: 4.8 Consensus size: 9
51131806 AAATAATGCA
51131816 GTTAATTCG
1 GTTAATTCG
*
51131825 GTTAATTTG
1 GTTAATTCG
* *
51131834 GGTAATTCA
1 GTTAATTCG
51131843 GTTAATTCG
1 GTTAATTCG
51131852 GTTAATT
1 GTTAATT
51131859 TTATACATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.26, C:0.07, G:0.21, T:0.47
Consensus pattern (9 bp):
GTTAATTCG
Found at i:51133239 original size:8 final size:8
Alignment explanation
Indices: 51133221--51133254 Score: 50
Period size: 8 Copynumber: 4.0 Consensus size: 8
51133211 TTTGTTTTCT
51133221 TTATATATA
1 TTAT-TATA
51133230 TTATTATA
1 TTATTATA
51133238 TTATTATA
1 TTATTATA
51133246 TTACTTATA
1 TTA-TTATA
51133255 AAATATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 15 0.62
9 9 0.38
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (8 bp):
TTATTATA
Found at i:51134643 original size:22 final size:21
Alignment explanation
Indices: 51134615--51134657 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
51134605 TAATTCATAC
51134615 AAATTTTAAAAAAGAATAAAAA
1 AAATTTTAAAAAAGAA-AAAAA
*
51134637 AAATTTTAAAAAATAAAAAAA
1 AAATTTTAAAAAAGAAAAAAA
51134658 TTTCATAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (21 bp):
AAATTTTAAAAAAGAAAAAAA
Found at i:51135815 original size:22 final size:22
Alignment explanation
Indices: 51135766--51135815 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
51135756 AAAATAGTAG
*
51135766 AAAAAATAGCGAGAAAATAACA
1 AAAAAATAGCGAGAAAACAACA
* *
51135788 AGAAAATAGC-AGTAAAACAATA
1 AAAAAATAGCGAG-AAAACAACA
51135810 AAAAAA
1 AAAAAA
51135816 AAGACAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.70, C:0.08, G:0.12, T:0.10
Consensus pattern (22 bp):
AAAAAATAGCGAGAAAACAACA
Found at i:51136462 original size:4 final size:4
Alignment explanation
Indices: 51136453--51136481 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
51136443 AACAAATATT
51136453 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
51136482 ACCTTTGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:51136693 original size:24 final size:24
Alignment explanation
Indices: 51136651--51136697 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
51136641 GGTTTGAATT
51136651 ATTTATTTATTTTTTATAAATTAAC
1 ATTTATTTATTTTTTAT-AATTAAC
51136676 ATTTATTTA-TTTTTATAATTAA
1 ATTTATTTATTTTTTATAATTAA
51136698 ATAATAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 6 0.27
24 7 0.32
25 9 0.41
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (24 bp):
ATTTATTTATTTTTTATAATTAAC
Found at i:51138864 original size:15 final size:15
Alignment explanation
Indices: 51138844--51138882 Score: 64
Period size: 14 Copynumber: 2.7 Consensus size: 15
51138834 AAATTTTATT
51138844 TTATAATAATATAAA
1 TTATAATAATATAAA
51138859 TTATAAT-ATATAAA
1 TTATAATAATATAAA
51138873 TT-TAATAATA
1 TTATAATAATA
51138883 AATAATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.17
14 12 0.52
15 7 0.30
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TTATAATAATATAAA
Found at i:51138883 original size:12 final size:13
Alignment explanation
Indices: 51138849--51138885 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
51138839 TTATTTTATA
51138849 ATAAT-ATAAATT
1 ATAATAATAAATT
51138861 ATAATATATAAATT
1 ATAATA-ATAAATT
51138875 -TAATAATAAAT
1 ATAATAATAAAT
51138886 AATTTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 11 0.48
13 5 0.22
14 7 0.30
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
ATAATAATAAATT
Found at i:51138905 original size:28 final size:31
Alignment explanation
Indices: 51138846--51138906 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 31
51138836 ATTTTATTTT
*
51138846 ATAATAATATAAATTATAATATATAAATTTA
1 ATAATAATATAAATTATAATATATAAACTTA
* *
51138877 ATAATAA-ATAATTTTTAAT-TA-AAACTTA
1 ATAATAATATAAATTATAATATATAAACTTA
51138905 AT
1 AT
51138907 TTATATTACA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 8 0.30
29 2 0.07
30 10 0.37
31 7 0.26
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (31 bp):
ATAATAATATAAATTATAATATATAAACTTA
Found at i:51142830 original size:5 final size:5
Alignment explanation
Indices: 51142814--51142852 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
51142804 CGAAATTTTT
*
51142814 ATAAA A-AAA ATAAA ATAAA ATAAA AAAAA ATAAA A-AAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
51142853 AATTTGGAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
4 8 0.26
5 23 0.74
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (5 bp):
ATAAA
Found at i:51142835 original size:10 final size:9
Alignment explanation
Indices: 51142814--51142852 Score: 60
Period size: 9 Copynumber: 4.1 Consensus size: 9
51142804 CGAAATTTTT
51142814 ATAAAAAAA
1 ATAAAAAAA
51142823 ATAAAATAAA
1 ATAAAA-AAA
51142833 ATAAAAAAAA
1 AT-AAAAAAA
51142843 ATAAAAAAA
1 ATAAAAAAA
51142852 A
1 A
51142853 AATTTGGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 14 0.50
10 10 0.36
11 4 0.14
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (9 bp):
ATAAAAAAA
Done.