Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 159 of 250
Found at i:51142853 original size:10 final size:10
Alignment explanation
Indices: 51142816--51142853 Score: 67
Period size: 10 Copynumber: 3.8 Consensus size: 10
51142806 AAATTTTTAT
51142816 AAAAAAAATA
1 AAAAAAAATA
*
51142826 AAATAAAATA
1 AAAAAAAATA
51142836 AAAAAAAATA
1 AAAAAAAATA
51142846 AAAAAAAA
1 AAAAAAAA
51142854 ATTTGGAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:51143650 original size:143 final size:143
Alignment explanation
Indices: 51143393--51143652 Score: 337
Period size: 143 Copynumber: 1.8 Consensus size: 143
51143383 AGTTGCAAAC
*
51143393 TTAGTCCTTATACTCTAATTTGGTTAATTTAATCCATGTACTCTTTTGAATTTTGAAATTTTAAT
1 TTAGTCCTTATACTCTAATTTGGTCAATTTAATCCATGTACTCTTTTGAATTTTGAAATTTTAAT
* ** * * * * * * **
51143458 TATGACTTAAACGTTTATAGTTTAATTTGTTAGGTCAAAATTTGTTATTAGTTCATGTACTATGC
66 TATAACCCAAACGGTAACAATTAAATCTGTTAGGTCAAAATTTACTATTAGTTCATGTACTATGC
51143523 ATACATAGCATAA
131 ATACATAGCATAA
* * *
51143536 TTAGTCTTTATACTCTAATTTGGTCAATTTTAGTCCATGTA-TTTTTTGAATTTTGAAATTTTAA
1 TTAGTCCTTATACTCTAATTTGGTCAA-TTTAATCCATGTACTCTTTTGAATTTTGAAATTTTAA
51143600 TCT-TAACCCAAACGGTAACAATTAAATCTGTTAGGTC-AAATTCTACTATTAGT
65 T-TATAACCCAAACGGTAACAATTAAATCTGTTAGGTCAAAATT-TACTATTAGT
51143653 CATTATATTA
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
142 5 0.05
143 81 0.82
144 13 0.13
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (143 bp):
TTAGTCCTTATACTCTAATTTGGTCAATTTAATCCATGTACTCTTTTGAATTTTGAAATTTTAAT
TATAACCCAAACGGTAACAATTAAATCTGTTAGGTCAAAATTTACTATTAGTTCATGTACTATGC
ATACATAGCATAA
Found at i:51144225 original size:13 final size:13
Alignment explanation
Indices: 51144207--51144232 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51144197 GGCACGATTC
51144207 AATTTTTTATATT
1 AATTTTTTATATT
51144220 AATTTTTTATATT
1 AATTTTTTATATT
51144233 TTTTTAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
AATTTTTTATATT
Found at i:51144271 original size:26 final size:29
Alignment explanation
Indices: 51144215--51144275 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
51144205 TCAATTTTTT
51144215 ATATTAATTTTTTATATTTTTTTAAATAAA
1 ATATTAATTTTTTATATTTTTTT-AATAAA
51144245 ATATT-ATTTTTT-TATTTTTATT-A-AAA
1 ATATTAATTTTTTATATTTTT-TTAATAAA
51144271 ATATT
1 ATATT
51144276 TAAATATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
26 8 0.27
27 1 0.03
28 7 0.23
29 9 0.30
30 5 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (29 bp):
ATATTAATTTTTTATATTTTTTTAATAAA
Found at i:51145136 original size:27 final size:27
Alignment explanation
Indices: 51145098--51145167 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
51145088 CCTACCATTT
* *
51145098 GCGCCTCTGAGATAGGCACGATTAGTC
1 GCGCCTCTGAGATAGGCACAACTAGTC
* *
51145125 GCGCCTCTGAGAAAGGCTCAACTAGTC
1 GCGCCTCTGAGATAGGCACAACTAGTC
*
51145152 GCGCCTCTGACATAGG
1 GCGCCTCTGAGATAGG
51145168 TGCAACCTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (27 bp):
GCGCCTCTGAGATAGGCACAACTAGTC
Found at i:51148769 original size:146 final size:147
Alignment explanation
Indices: 51148521--51148789 Score: 362
Period size: 146 Copynumber: 1.8 Consensus size: 147
51148511 CTGAATTCGT
*
51148521 AAGGGATGAAAGAACGCTCAGAGTCTCAAATCATGACATGAATGAAAGCAGAACATCGGAAGGCC
1 AAGGGATGAAAGAAC-CTCAGAGTCTCAAATCATGACATGAATGAAAGCAGAACATCGGAAGACC
* * * *
51148586 TCATAGCACAATAGGACTATACTGAATGCACAGCTTCCAGGTTTCAACATAGTTATGCACATTAG
65 TCATAGCACAATAGGACTATACCGAATACACAGCTTCCAGATTTCAACATAATTATGCACATTAG
51148651 CATCGGACACCGACAGAC
130 CATCGGACACCGACAGAC
* * * *
51148669 AAGGGATGTAAGAA-CTCTGAGTCTCAAATTATGACATGAATGAGAGCAGAACATCGGAAGACCT
1 AAGGGATGAAAGAACCTCAGAGTCTCAAATCATGACATGAATGAAAGCAGAACATCGGAAGACCT
** ** * * *
51148733 TGTAGCACGGTAGGATTATACCGAATATAC-GCCTTCCAGATTTCGACATAATTATGC
66 CATAGCACAATAGGACTATACCGAATACACAG-CTTCCAGATTTCAACATAATTATGC
51148790 CTTGAGCTAG
Statistics
Matches: 104, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
145 1 0.01
146 90 0.87
148 13 0.12
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (147 bp):
AAGGGATGAAAGAACCTCAGAGTCTCAAATCATGACATGAATGAAAGCAGAACATCGGAAGACCT
CATAGCACAATAGGACTATACCGAATACACAGCTTCCAGATTTCAACATAATTATGCACATTAGC
ATCGGACACCGACAGAC
Found at i:51152970 original size:17 final size:17
Alignment explanation
Indices: 51152929--51152970 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
51152919 ATAAAATTAT
*
51152929 TGATAAATTAAATATTA
1 TGATAAATTAAATATCA
* *
51152946 TAAAAAATTAAATATCA
1 TGATAAATTAAATATCA
51152963 TGATAAAT
1 TGATAAAT
51152971 GATATTTAAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (17 bp):
TGATAAATTAAATATCA
Found at i:51163532 original size:13 final size:13
Alignment explanation
Indices: 51163514--51163538 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51163504 AAAAAATATT
51163514 AATTAATTAATTA
1 AATTAATTAATTA
51163527 AATTAATTAATT
1 AATTAATTAATT
51163539 TTAGTTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AATTAATTAATTA
Found at i:51178881 original size:64 final size:64
Alignment explanation
Indices: 51178696--51179195 Score: 424
Period size: 64 Copynumber: 7.8 Consensus size: 64
51178686 AGTTTCAGGC
* * * * * ** *
51178696 TTTCAGCTAAAAGATAAAGCGATATAGCGTC-AAACTGAGTGAAAAAAACATAATGAAATTAAG
1 TTTCAGATAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAAACATAAAGATTTTCAG
* * * * * *** *
51178759 TTTCAGCTAGAAGATAGAGCTGAATAGCATCAAAACCAAGTG--AAAAACATAAAAATTTTCAG
1 TTTCAGATAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAAACATAAAGATTTTCAG
* * * *
51178821 TTTCAGATAAAACATAAA-CTAAATAGCGTAAAAAATGAGTGAAAAAAAACATAATGATTTTCAG
1 TTTCAGATAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTG-AAAAAAACATAAAGATTTTCAG
* * * *
51178885 TTTCAGCTAAAAGGTAAAGCTTAATAGCGTCAAAATTGAGTG-AAAAAACA-AAACGGTTTTCAG
1 TTTCAGATAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAAACATAAA-GATTTTCAG
* * * * * ** * *
51178948 TTTCAGCTAAAAAGATAAAGCTAAATAGAGTCAAATTTTAGTTAAAAGTACATTAAGATTTACAG
1 TTTCAGAT-AAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAAACATAAAGATTTTCAG
** *
51179013 TTTCAGATTTTCAGCTCAAAGATAAAGCTAAATAGCGTCAAAATTTTGTGGAAAAAA-ATAAAGA
1 TTTCAGA---T-A----AAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAAACATAAAGA
51179077 TTTTCAG
58 TTTTCAG
* * * * *
51179084 -TACAGATAAAAGATAAAG-AAAATAGCATCAAAATTGAGTGAAAAAGACGTAAAGATTTTCAG
1 TTTCAGATAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAAACATAAAGATTTTCAG
* * *
51179146 TTTCAGTTAAAAGATAAAGATAAATAACGTCAAAATTGAGTGGAAAAAAA
1 TTTCAGATAAAAGATAAAGCTAAATAGCGTCAAAATTGAGT-GAAAAAAA
51179196 TAATAAAATA
Statistics
Matches: 348, Mismatches: 69, Indels: 38
0.76 0.15 0.08
Matches are distributed among these distances:
61 40 0.11
62 54 0.16
63 65 0.19
64 87 0.25
65 46 0.13
66 3 0.01
67 1 0.00
68 2 0.01
70 5 0.01
71 12 0.03
72 33 0.09
ACGTcount: A:0.48, C:0.10, G:0.16, T:0.25
Consensus pattern (64 bp):
TTTCAGATAAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGAAAAAAACATAAAGATTTTCAG
Found at i:51179081 original size:136 final size:131
Alignment explanation
Indices: 51178757--51179198 Score: 344
Period size: 136 Copynumber: 3.4 Consensus size: 131
51178747 AATGAAATTA
* * * *** * *
51178757 AGTTTCAGCTAGAAGATAGAGCTGAATAGCATCAAAACCAAGT-GAAAAACATAAA-AATTTTCA
1 AGTTTCAGCTA-AAGATAAAGCTAAATAGCGTCAAAATTGAGTGGAAAAAAATAAACGATTTTCA
* * ** * * * * *
51178820 GTTTCAGATAAAACATAAACTAAATAGCGTAAAAAATGAGTGAAAAAAAACATAATGA--T----
65 G-TACAGATAAAAGATAAAGAAAATAGCATCAAAATTGAGTG-AAAAAGACATAAAGATTTACAG
51178879 TTTC
128 TTTC
* * *
51178883 AGTTTCAGCTAAAAGGTAAAGCTTAATAGCGTCAAAATTGAGT-GAAAAAACA-AAACGGTTTTC
1 AGTTTCAGCT-AAAGATAAAGCTAAATAGCGTCAAAATTGAGTGGAAAAAA-ATAAACGATTTTC
* * * * * * *
51178946 AGTTTCAGCTAAAAAGATAAAGCTAAATAG-AGTCAAATTTTAGT-TAAAAGTACATTAAGATTT
64 AG-TACAGAT-AAAAGATAAAG-AAAATAGCA-TCAAAATTGAGTGAAAAAG-ACATAAAGATTT
51179009 ACAGTTTC
124 ACAGTTTC
**
51179017 AGATTTTCAGCTCAAAGATAAAGCTAAATAGCGTCAAAATTTTGTGGAAAAAAATAAA-GATTTT
1 AG--TTTCAGCT-AAAGATAAAGCTAAATAGCGTCAAAATTGAGTGGAAAAAAATAAACGATTTT
* *
51179081 CAGTACAGATAAAAGATAAAGAAAATAGCATCAAAATTGAGTGAAAAAGACGTAAAGATTTTCAG
63 CAGTACAGATAAAAGATAAAGAAAATAGCATCAAAATTGAGTGAAAAAGACATAAAGATTTACAG
51179146 TTTC
128 TTTC
* *
51179150 AG-TT-A---AAAGATAAAGATAAATAACGTCAAAATTGAGTGGAAAAAAATAA
1 AGTTTCAGCTAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGGAAAAAAATAA
51179199 TAAAATAAAA
Statistics
Matches: 256, Mismatches: 41, Indels: 39
0.76 0.12 0.12
Matches are distributed among these distances:
125 40 0.16
126 43 0.17
127 20 0.08
128 16 0.06
129 16 0.06
130 3 0.01
133 35 0.14
134 23 0.09
135 5 0.02
136 45 0.18
137 10 0.04
ACGTcount: A:0.48, C:0.10, G:0.16, T:0.26
Consensus pattern (131 bp):
AGTTTCAGCTAAAGATAAAGCTAAATAGCGTCAAAATTGAGTGGAAAAAAATAAACGATTTTCAG
TACAGATAAAAGATAAAGAAAATAGCATCAAAATTGAGTGAAAAAGACATAAAGATTTACAGTTT
C
Found at i:51180937 original size:91 final size:91
Alignment explanation
Indices: 51180798--51181070 Score: 287
Period size: 91 Copynumber: 3.0 Consensus size: 91
51180788 ATACGTCAAT
* *
51180798 TTGCTCATAAGAGCTTTCCAACCGATAACATGTCAGATGCACATAGTGCAAAGCCCATAGACTAA
1 TTGCTCATAAGAGCTTTCCAACCGATAACATGCCAGACGCACATAGTGCAAAGCCCATAGACTAA
* *
51180863 ATAATCTCTCTCAATAACACGCC-GAA
66 ATAATCTCCCCCAATAACACGCCAG-A
* * * * * ** *
51180889 TTGCTTATAAGAGCTTTCCAACTGATAGCATGCCATACGCATATAGTGCAAAGCCCATAGGTTGA
1 TTGCTCATAAGAGCTTTCCAACCGATAACATGCCAGACGCACATAGTGCAAAGCCCATAGACTAA
* **
51180954 ATATTCTCCCCCAATAACACTTCAGA
66 ATAATCTCCCCCAATAACACGCCAGA
* * * * *** ** *
51180980 TTGCTCATAAGAGCTTTCCAACCAATAACACGCTAGATGCACATAGTGCAAAGCTTGTAGGTTGA
1 TTGCTCATAAGAGCTTTCCAACCGATAACATGCCAGACGCACATAGTGCAAAGCCCATAGACTAA
* *
51181045 ATATTCTCCCCCGATAACACGCCAGA
66 ATAATCTCCCCCAATAACACGCCAGA
51181071 ATCTCTGAAA
Statistics
Matches: 151, Mismatches: 30, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
91 150 0.99
92 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (91 bp):
TTGCTCATAAGAGCTTTCCAACCGATAACATGCCAGACGCACATAGTGCAAAGCCCATAGACTAA
ATAATCTCCCCCAATAACACGCCAGA
Found at i:51184161 original size:24 final size:25
Alignment explanation
Indices: 51184133--51184180 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
51184123 GATAAATGAA
51184133 ATACATGTGTAATAAATAT-TGTAC
1 ATACATGTGTAATAAATATATGTAC
* *
51184157 ATACATTTGTAATACATATATGTA
1 ATACATGTGTAATAAATATATGTA
51184181 TTTACTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (25 bp):
ATACATGTGTAATAAATATATGTAC
Found at i:51185692 original size:18 final size:18
Alignment explanation
Indices: 51185635--51185694 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
51185625 GATTGTTTGC
* *
51185635 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTAT
* *
51185653 TACGGAATAAACGACTGA-
1 TACTGAATAAATGACT-AT
51185671 TACTGAATAAATGACTAT
1 TACTGAATAAATGACTAT
51185689 TACTGA
1 TACTGA
51185695 TTAACCAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 1 0.03
18 33 0.97
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (18 bp):
TACTGAATAAATGACTAT
Found at i:51193913 original size:25 final size:25
Alignment explanation
Indices: 51193885--51193976 Score: 86
Period size: 25 Copynumber: 3.8 Consensus size: 25
51193875 AATATACATT
51193885 TTATGCATCACATCTTCAACATGTA
1 TTATGCATCACATCTTCAACATGTA
* * *
51193910 TTATTCATCCATATCAAT-ATACAT-T-
1 TTATGCAT-CACATC-TTCA-ACATGTA
51193935 TTATGCATCACATCTTCAACATGTA
1 TTATGCATCACATCTTCAACATGTA
*
51193960 TTATTCATC-CAT-TTCAA
1 TTATGCATCACATCTTCAA
51193977 AGCATTTATA
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
23 10 0.19
24 10 0.19
25 22 0.41
26 7 0.13
27 5 0.09
ACGTcount: A:0.33, C:0.23, G:0.04, T:0.40
Consensus pattern (25 bp):
TTATGCATCACATCTTCAACATGTA
Found at i:51193924 original size:50 final size:50
Alignment explanation
Indices: 51193869--51193976 Score: 207
Period size: 50 Copynumber: 2.2 Consensus size: 50
51193859 ATATTAGGAA
51193869 CATATCAATATACATTTTATGCATCACATCTTCAACATGTATTATTCATC
1 CATATCAATATACATTTTATGCATCACATCTTCAACATGTATTATTCATC
51193919 CATATCAATATACATTTTATGCATCACATCTTCAACATGTATTATTCATC
1 CATATCAATATACATTTTATGCATCACATCTTCAACATGTATTATTCATC
*
51193969 CATTTCAA
1 CATATCAA
51193977 AGCATTTATA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.34, C:0.22, G:0.04, T:0.40
Consensus pattern (50 bp):
CATATCAATATACATTTTATGCATCACATCTTCAACATGTATTATTCATC
Found at i:51205877 original size:31 final size:31
Alignment explanation
Indices: 51205839--51205898 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
51205829 TTAAAAATGA
*
51205839 CCATTTCTTCTCTTCTCTTCTATTCCCCTCT
1 CCATTTCTTCTCTTCTATTCTATTCCCCTCT
* *
51205870 CCATTTCTTTTCTTCTATTCTATTTCCCT
1 CCATTTCTTCTCTTCTATTCTATTCCCCT
51205899 TTCTTCTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.08, C:0.37, G:0.00, T:0.55
Consensus pattern (31 bp):
CCATTTCTTCTCTTCTATTCTATTCCCCTCT
Found at i:51208035 original size:293 final size:293
Alignment explanation
Indices: 51207508--51208093 Score: 1145
Period size: 293 Copynumber: 2.0 Consensus size: 293
51207498 TTAATATCTT
*
51207508 CAAATGGTTCAAATGGTAGTATAGGGCTTTCAACCTGATAAGGTAACTTTAGGGATCCTTAGCCA
1 CAAATGGTTCAAATGGTAGTACAGGGCTTTCAACCTGATAAGGTAACTTTAGGGATCCTTAGCCA
51207573 AGCAGTTTCAAATGGTTCGATAAAGAGATTTCCCAAAGTCGCTAAAGTTCTAGATTGGGTGATAA
66 AGCAGTTTCAAATGGTTCGATAAAGAGATTTCCCAAAGTCGCTAAAGTTCTAGATTGGGTGATAA
*
51207638 GTAATGACTTTTAGAAAGAAAAAGATCAAAAGACAATAGTTGGCTGATTTATTTAGTTTTTGAAG
131 GTAATGACTTTTAGAAAGAAAAAGATCAAAAGACAATAGCTGGCTGATTTATTTAGTTTTTGAAG
51207703 TTTCTTTTCATATGATTGCTTGAAGCAAATTATGGCTCGCTTGGTCTTTTCTAAGAACATTTATG
196 TTTCTTTTCATATGATTGCTTGAAGCAAATTATGGCTCGCTTGGTCTTTTCTAAGAACATTTATG
51207768 AAGATTCAAGCCTGAATCAGGTATGAAAAGTTC
261 AAGATTCAAGCCTGAATCAGGTATGAAAAGTTC
51207801 CAAATGGTTCAAATGGTAGTACAGGGCTTTCAACCTGATAAGGTAACTTTAGGGATCCTTAGCCA
1 CAAATGGTTCAAATGGTAGTACAGGGCTTTCAACCTGATAAGGTAACTTTAGGGATCCTTAGCCA
*
51207866 AGCAGTTTCAAATGGTTCGATAAAGAGATTTCCTAAAGTCGCTAAAGTTCTAGATTGGGTGATAA
66 AGCAGTTTCAAATGGTTCGATAAAGAGATTTCCCAAAGTCGCTAAAGTTCTAGATTGGGTGATAA
51207931 GTAATGACTTTTAGAAAGAAAAAGATCAAAAGACAATAGCTGGCTGATTTATTTAGTTTTTGAAG
131 GTAATGACTTTTAGAAAGAAAAAGATCAAAAGACAATAGCTGGCTGATTTATTTAGTTTTTGAAG
51207996 TTTCTTTTCATATGATTGCTTGAAGCAAATTATGGCTCGCTTGGTCTTTTCTAAGAACATTTATG
196 TTTCTTTTCATATGATTGCTTGAAGCAAATTATGGCTCGCTTGGTCTTTTCTAAGAACATTTATG
51208061 AAGATTCAAGCCTGAATCAGGTATGAAAAGTTC
261 AAGATTCAAGCCTGAATCAGGTATGAAAAGTTC
51208094 TTAATCAATG
Statistics
Matches: 290, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
293 290 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (293 bp):
CAAATGGTTCAAATGGTAGTACAGGGCTTTCAACCTGATAAGGTAACTTTAGGGATCCTTAGCCA
AGCAGTTTCAAATGGTTCGATAAAGAGATTTCCCAAAGTCGCTAAAGTTCTAGATTGGGTGATAA
GTAATGACTTTTAGAAAGAAAAAGATCAAAAGACAATAGCTGGCTGATTTATTTAGTTTTTGAAG
TTTCTTTTCATATGATTGCTTGAAGCAAATTATGGCTCGCTTGGTCTTTTCTAAGAACATTTATG
AAGATTCAAGCCTGAATCAGGTATGAAAAGTTC
Found at i:51209189 original size:18 final size:17
Alignment explanation
Indices: 51209154--51209195 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
51209144 ATTTTTATGC
51209154 AAATAAATAAAAACAAT
1 AAATAAATAAAAACAAT
* *
51209171 AAATAACATAAATATAAT
1 AAATAA-ATAAAAACAAT
51209189 AAA-AAAT
1 AAATAAAT
51209196 TTATGAGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 2 0.09
17 8 0.36
18 12 0.55
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (17 bp):
AAATAAATAAAAACAAT
Found at i:51209599 original size:21 final size:20
Alignment explanation
Indices: 51209575--51209629 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
51209565 TTTTAAAATT
51209575 ATACATAATATAATAAATAAG
1 ATACATAA-ATAATAAATAAG
*
51209596 ATACAATAAA-ATATAAATAAT
1 ATAC-ATAAATA-ATAAATAAG
51209617 ATA-ATAAATAATA
1 ATACATAAATAATA
51209630 CAAATAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
19 8 0.27
20 2 0.07
21 16 0.53
22 4 0.13
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (20 bp):
ATACATAAATAATAAATAAG
Found at i:51209616 original size:33 final size:32
Alignment explanation
Indices: 51209568--51209640 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 32
51209558 TACAAATTTT
*
51209568 TAAAATTATACATAATATAATAAATAAGATAC-AA
1 TAAAA-TATAAATAATATAATAAAT-A-ATACAAA
51209602 TAAAATATAAATAATATAATAAATAATACAAA
1 TAAAATATAAATAATATAATAAATAATACAAA
51209634 TAAAATA
1 TAAAATA
51209641 AATATTTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
31 4 0.11
32 10 0.27
33 18 0.49
34 5 0.14
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (32 bp):
TAAAATATAAATAATATAATAAATAATACAAA
Found at i:51209625 original size:12 final size:11
Alignment explanation
Indices: 51209574--51209629 Score: 51
Period size: 12 Copynumber: 5.0 Consensus size: 11
51209564 TTTTTAAAAT
*
51209574 TATACATAATA
1 TATAAATAATA
*
51209585 TAATAAATAAGA
1 T-ATAAATAATA
* *
51209597 TA-CAATAAAA
1 TATAAATAATA
51209607 TATAAATAATA
1 TATAAATAATA
51209618 TAATAAATAATA
1 T-ATAAATAATA
51209630 CAAATAAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
10 8 0.22
11 9 0.25
12 19 0.53
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (11 bp):
TATAAATAATA
Found at i:51209687 original size:30 final size:28
Alignment explanation
Indices: 51209653--51209719 Score: 71
Period size: 30 Copynumber: 2.3 Consensus size: 28
51209643 TATTTTTTAC
* *
51209653 ATATAAATAAGGTTTAAAGTAAAATAAATA
1 ATATAAA-AAGATTTAAAAT-AAATAAATA
* *
51209683 ATATACAAAATATTTAAAATAAATAAATT
1 ATATA-AAAAGATTTAAAATAAATAAATA
51209712 ATATAAAA
1 ATATAAAA
51209720 TATATATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 3 0.09
29 13 0.41
30 14 0.44
31 2 0.06
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (28 bp):
ATATAAAAAGATTTAAAATAAATAAATA
Found at i:51209700 original size:25 final size:27
Alignment explanation
Indices: 51209672--51209722 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
51209662 AGGTTTAAAG
51209672 TAAAATAAAT-AA-TATACAAAATATT
1 TAAAATAAATAAATTATACAAAATATT
*
51209697 TAAAATAAATAAATTATATAAAATAT
1 TAAAATAAATAAATTATACAAAATAT
51209723 ATATAAAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.43
26 2 0.09
27 11 0.48
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (27 bp):
TAAAATAAATAAATTATACAAAATATT
Found at i:51209701 original size:9 final size:9
Alignment explanation
Indices: 51209682--51209725 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
51209672 TAAAATAAAT
*
51209682 AATATACAA
1 AATATATAA
*
51209691 AATATTTAA
1 AATATATAA
*
51209700 AATAAATAA
1 AATATATAA
*
51209709 ATTATATAA
1 AATATATAA
51209718 AATATATA
1 AATATATA
51209726 TAAAAAGGAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (9 bp):
AATATATAA
Found at i:51209715 original size:29 final size:30
Alignment explanation
Indices: 51209665--51209730 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 30
51209655 ATAAATAAGG
*
51209665 TTTAAAGTAAAATAAATAATATACAAA-ATA
1 TTTAAAATAAAATAAATAATATA-AAATATA
*
51209695 TTTAAAAT-AAATAAATTATATAAAATATA
1 TTTAAAATAAAATAAATAATATAAAATATA
*
51209724 TATAAAA
1 TTTAAAA
51209731 AGGATTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 3 0.09
29 22 0.69
30 7 0.22
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (30 bp):
TTTAAAATAAAATAAATAATATAAAATATA
Found at i:51214094 original size:26 final size:26
Alignment explanation
Indices: 51214063--51214170 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
51214053 TGAAATGCCC
*
51214063 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
51214089 ACCATGGAGCATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
51214115 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
51214141 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
51214167 ATCA
1 ATCA
51214171 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:51215378 original size:20 final size:19
Alignment explanation
Indices: 51215333--51215370 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
51215323 CATCCAAACA
51215333 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
*
51215352 CCAGAAAAGTAAATTATTT
1 CCAGAAAAGTAAATCATTT
51215371 TCCGGAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:51215384 original size:14 final size:14
Alignment explanation
Indices: 51215362--51215392 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
51215352 CCAGAAAAGT
*
51215362 AAATTATTTTCCGG
1 AAATCATTTTCCGG
51215376 AAATCATTTTCCGG
1 AAATCATTTTCCGG
51215390 AAA
1 AAA
51215393 ATATTTTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (14 bp):
AAATCATTTTCCGG
Found at i:51215398 original size:14 final size:13
Alignment explanation
Indices: 51215366--51215399 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
51215356 AAAAGTAAAT
51215366 TATTTTCCGGAAA
1 TATTTTCCGGAAA
51215379 TCATTTTCCGGAAAA
1 T-ATTTTCCGG-AAA
51215394 TATTTT
1 TATTTT
51215400 ACTGGCAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.05
14 14 0.74
15 4 0.21
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (13 bp):
TATTTTCCGGAAA
Found at i:51220032 original size:6 final size:6
Alignment explanation
Indices: 51220017--51220075 Score: 59
Period size: 6 Copynumber: 10.2 Consensus size: 6
51220007 GATTCGAGTA
* * * **
51220017 ATATAT ATATAC ATAT-- ATACAT ATATAC ATATAC ATATAC ATATGT
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
51220063 ATATAC ATATAC A
1 ATATAC ATATAC A
51220076 CACATGCATG
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
4 3 0.07
6 40 0.93
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (6 bp):
ATATAC
Found at i:51220034 original size:8 final size:8
Alignment explanation
Indices: 51220021--51220073 Score: 61
Period size: 8 Copynumber: 6.6 Consensus size: 8
51220011 CGAGTAATAT
51220021 ATATATAC
1 ATATATAC
51220029 ATATATAC
1 ATATATAC
51220037 ATATATAC
1 ATATATAC
* *
51220045 ATATACAT
1 ATATATAC
* *
51220053 ATACATAT
1 ATATATAC
*
51220061 GTATATAC
1 ATATATAC
51220069 ATATA
1 ATATA
51220074 CACACATGCA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 37 1.00
ACGTcount: A:0.49, C:0.11, G:0.02, T:0.38
Consensus pattern (8 bp):
ATATATAC
Found at i:51224258 original size:5 final size:5
Alignment explanation
Indices: 51224248--51224278 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
51224238 TTTTTTGAAC
*
51224248 ATTAA AATAA ATTAA ATTAA ATTAA ATTAA A
1 ATTAA ATTAA ATTAA ATTAA ATTAA ATTAA A
51224279 GTTAGAACAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (5 bp):
ATTAA
Found at i:51227685 original size:41 final size:41
Alignment explanation
Indices: 51227640--51227795 Score: 278
Period size: 41 Copynumber: 3.8 Consensus size: 41
51227630 TAATTCAGTA
51227640 CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCA-TTAAGCCTGCTAGACATATAGTCTGAAATGTAT
51227681 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
51227722 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
* *
51227763 CACCGGCATTAAGCCTGCTAGACTTAAAGTCTG
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTG
51227796 TATTACATTC
Statistics
Matches: 112, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
40 2 0.02
41 110 0.98
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
Found at i:51228152 original size:14 final size:16
Alignment explanation
Indices: 51228125--51228189 Score: 51
Period size: 17 Copynumber: 3.9 Consensus size: 16
51228115 ACTTTATATA
51228125 TATATATATACATACT
1 TATATATATACATACT
*
51228141 TATATAATCATACAAAC-
1 TATAT-AT-ATACATACT
* * *
51228158 CATATATATATATACC
1 TATATATATACATACT
*
51228174 TATATCTTATACATAC
1 TATAT-ATATACATAC
51228190 CTTTGATTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
15 6 0.16
16 11 0.29
17 14 0.37
18 7 0.18
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (16 bp):
TATATATATACATACT
Found at i:51235161 original size:14 final size:16
Alignment explanation
Indices: 51235134--51235198 Score: 51
Period size: 17 Copynumber: 3.9 Consensus size: 16
51235124 ACTTTATATA
51235134 TATATATATACATACT
1 TATATATATACATACT
*
51235150 TATATAATCATACAAAC-
1 TATAT-AT-ATACATACT
* * *
51235167 CATATATATATATACC
1 TATATATATACATACT
*
51235183 TATATCTTATACATAC
1 TATAT-ATATACATAC
51235199 CTTTGATTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
15 6 0.16
16 11 0.29
17 14 0.37
18 7 0.18
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (16 bp):
TATATATATACATACT
Found at i:51237025 original size:22 final size:21
Alignment explanation
Indices: 51236971--51237027 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
51236961 AATAACATAG
*
51236971 ATAATATATATATAATGAAAA
1 ATAATATAAATATAATGAAAA
*
51236992 ACTTAA-ATAAATATAATGAAAT
1 A--TAATATAAATATAATGAAAA
51237014 ATAATATGAAATAT
1 ATAATAT-AAATAT
51237028 GTATAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
20 3 0.10
21 3 0.10
22 21 0.70
23 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (21 bp):
ATAATATAAATATAATGAAAA
Found at i:51239099 original size:262 final size:262
Alignment explanation
Indices: 51238664--51239259 Score: 969
Period size: 262 Copynumber: 2.3 Consensus size: 262
51238654 ATACAAAGAT
* ** * * *
51238664 GCCAAATCATCTTAGATCTGCTTCAGCGTAAACA-CGTGAAAGCTAAATCTGCTGTGTCTTTGAT
1 GCCAAATCATCTTGGATCTGCTTCAGTATAAACATC-TGAAAGCCAAATCTGTTGTGTCTTCGAT
*
51238728 TTGCTCCTTGTGAACACAAGAATGCCAAATCCTCTTGGATCTGCTTCAGTAAAATCATCTGAAGG
65 TTGCTCCTTGTGAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTAAAATCATCTGAAGG
* *
51238793 TTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTTATCTTGGATCTAC
130 TTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAAATGCCAGATCTATTATCTTGGATCTAC
* * *
51238858 TTTGGTGTAAGAACATCCGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAG
195 TTTGGTGTAAGAACATCCGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCCTATAAACACAAG
51238923 AAC
260 AAC
*
51238926 GCCAAATCATCTTGGATATGCTTCAGTATAAACATCTGAAAGCCAAATCTGTTGTGTCTTCGATT
1 GCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCCAAATCTGTTGTGTCTTCGATT
* *
51238991 TGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGGATTTGCTTCAGTAAAATCATCTGAAGGT
66 TGCTCCTTGTGAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGT
* *
51239056 TAGATCTGCTATGTATCTGCTCTCTGTCGAAATGGAAATGCCAGATCTATTATCTTGGATCTGCT
131 TAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAAATGCCAGATCTATTATCTTGGATCTACT
*
51239121 TTGGTGTGAGAACATCCGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCCTATAAACACAAGA
196 TTGGTGTAAGAACATCCGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCCTATAAACACAAGA
*
51239186 AT
261 AC
* * *
51239188 GCCAACTCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCCAAATTTGTTGTTTCTTCGATT
1 GCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCCAAATCTGTTGTGTCTTCGATT
*
51239253 TTCTCCT
66 TGCTCCT
51239260 CGTCGAAGAT
Statistics
Matches: 309, Mismatches: 24, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
262 308 1.00
263 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (262 bp):
GCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCCAAATCTGTTGTGTCTTCGATT
TGCTCCTTGTGAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGT
TAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAAATGCCAGATCTATTATCTTGGATCTACT
TTGGTGTAAGAACATCCGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCCTATAAACACAAGA
AC
Found at i:51239235 original size:87 final size:87
Alignment explanation
Indices: 51238662--51239259 Score: 388
Period size: 87 Copynumber: 6.9 Consensus size: 87
51238652 CAATACAAAG
* ** * *
51238662 ATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACA-CGTGAAAG-CTAAATCTGCTGTGTCTTT
1 ATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATC-TGAAAGTC-AAATCTGCTATGTCTTC
*
51238725 GATTTGCTCCTTGTGAACACAAGA
64 GATTTGCTCCTTGTAAACACAAGA
* * * * *
51238749 ATGCCAAATCCTCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGT-ATC-
1 ATGCCAAATCATCTTGGATCTGCTTCAGTATAAA-CATCTGAAAGTCAAATCTGCTATGTCTTCG
* * ***
51238811 -TGCT-CTCCGTCG-AAA-TGGAG-
65 AT-TTGCTCC-TTGTAAACACAAGA
* * ** * *
51238831 ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTAAGAACATCCGAAAGTCAAATCTGCTATGT
1 ATGCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAATCTGCTATGT
* *
51238896 CTTCGATTTGTTCCTTGTAAGCACAAGA
60 CTTCGATTTGCTCCTTGTAAACACAAGA
* * * * *
51238924 ACGCCAAATCATCTTGGATATGCTTCAGTATAAACATCTGAAAGCCAAATCTGTTGTGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGTCTTCGA
* *
51238989 TTTGCTCCTTGTGAACACAAGG
66 TTTGCTCCTTGTAAACACAAGA
* * * *
51239011 ATGCCAAATCATCTTGGATTTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATG---T--
1 ATGCCAAATCATCTTGGATCTGCTTCAGTATAAA-CATCTGAAAGTCAAATCTGCTATGTCTTCG
* * **
51239070 ATCTGCT-CTCTGTCGAA-A-TGGAA
65 ATTTGCTCCT-TGT-AAACACAAG-A
* ** * *
51239093 ATGCCAGATCTATTATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGTCAAATCTGCTATGT
1 ATGCCA-A---ATCATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAATCTGCTATGT
* * *
51239158 CTTCGATTTGTTCCCTATAAACACAAGA
60 CTTCGATTTGCTCCTTGTAAACACAAGA
* * * * * *
51239186 ATGCCAACTCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGCCAAATTTGTTGTTTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGTCTTCGA
*
51239251 TTTTCTCCT
66 TTTGCTCCT
51239260 CGTCGAAGAT
Statistics
Matches: 382, Mismatches: 91, Indels: 76
0.70 0.17 0.14
Matches are distributed among these distances:
81 3 0.01
82 25 0.07
83 6 0.02
84 8 0.02
85 3 0.01
86 40 0.10
87 170 0.45
88 46 0.12
89 41 0.11
90 3 0.01
91 7 0.02
92 5 0.01
93 23 0.06
94 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (87 bp):
ATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGTCTTCGA
TTTGCTCCTTGTAAACACAAGA
Found at i:51243144 original size:19 final size:19
Alignment explanation
Indices: 51243120--51243164 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
51243110 TATAGTCCTT
*
51243120 TTAAATATTTTTTTATCTA
1 TTAAATATTTTTATATCTA
*
51243139 TTAAATA-CTTTATATCTA
1 TTAAATATTTTTATATCTA
51243157 -TAAATATT
1 TTAAATATT
51243165 AATTATAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 6 0.27
18 9 0.41
19 7 0.32
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.56
Consensus pattern (19 bp):
TTAAATATTTTTATATCTA
Found at i:51243198 original size:13 final size:13
Alignment explanation
Indices: 51243180--51243218 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
51243170 TAAAAAATAG
51243180 TATATATTATTTT
1 TATATATTATTTT
*
51243193 TATATATTATTTA
1 TATATATTATTTT
51243206 T-TATATTATTTT
1 TATATATTATTTT
51243218 T
1 T
51243219 TACATATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TATATATTATTTT
Found at i:51243212 original size:12 final size:12
Alignment explanation
Indices: 51243182--51243247 Score: 55
Period size: 12 Copynumber: 5.5 Consensus size: 12
51243172 AAAAATAGTA
*
51243182 TATATTATTTTT
1 TATATTATTTAT
51243194 ATATATTATTTAT
1 -TATATTATTTAT
*
51243207 TATATTATTTTT
1 TATATTATTTAT
* **
51243219 TACA-TATAAAT
1 TATATTATTTAT
51243230 TATATTTATTTA-
1 TATA-TTATTTAT
51243242 TATATT
1 TATATT
51243248 TCATATATAT
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
11 9 0.21
12 18 0.43
13 15 0.36
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (12 bp):
TATATTATTTAT
Found at i:51243235 original size:23 final size:25
Alignment explanation
Indices: 51243182--51243245 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
51243172 AAAAATAGTA
* **
51243182 TATATTATTTTTATATATTATTTAT
1 TATATTATTTTTATACATTATAAAT
51243207 TATATTATTTTT-TACA-TATAAAT
1 TATATTATTTTTATACATTATAAAT
*
51243230 TATATTTATTTATATA
1 TATA-TTATTTTTATA
51243246 TTTCATATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 9 0.27
24 10 0.30
25 14 0.42
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (25 bp):
TATATTATTTTTATACATTATAAAT
Found at i:51243238 original size:43 final size:43
Alignment explanation
Indices: 51243180--51243261 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
51243170 TAAAAAATAG
* *
51243180 TATATATTATTTTTATATAT-TATTT-ATTATATTATTTTTTACA
1 TATAAATTATATTTATATATATATTTCA-TATA-TATTTTTTACA
*
51243223 TATAAATTATATTTATTTATATATTTCATATATATTTTT
1 TATAAATTATATTTATATATATATTTCATATATATTTTT
51243262 AAAAAAATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
43 24 0.71
44 9 0.26
45 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (43 bp):
TATAAATTATATTTATATATATATTTCATATATATTTTTTACA
Found at i:51243588 original size:35 final size:35
Alignment explanation
Indices: 51243542--51243612 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
51243532 TTTTTTCTTT
*
51243542 TTATTCTGTCACGGTTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
51243577 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
51243612 T
1 T
51243613 GGGCACGACG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.14, C:0.24, G:0.34, T:0.28
Consensus pattern (35 bp):
TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
Found at i:51245058 original size:22 final size:22
Alignment explanation
Indices: 51245032--51245073 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
51245022 TTTTAATACG
**
51245032 TATTAAATTTTTTATATATTGT
1 TATTAAATCATTTATATATTGT
*
51245054 TATTATATCATTTATATATT
1 TATTAAATCATTTATATATT
51245074 AAATGCTAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (22 bp):
TATTAAATCATTTATATATTGT
Found at i:51255533 original size:23 final size:20
Alignment explanation
Indices: 51255469--51255532 Score: 59
Period size: 18 Copynumber: 3.5 Consensus size: 20
51255459 TACATATAAA
*
51255469 AATATAAT-AAAATA-A-GT
1 AATATAATAAAAATATATAT
51255486 AATATAATAAAAATATATA-
1 AATATAATAAAAATATATAT
*
51255505 ACATATAAT-AAAATTTATAT
1 A-ATATAATAAAAATATATAT
51255525 -ATATAATA
1 AATATAATA
51255533 TTACAAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 8 0.21
18 13 0.33
19 11 0.28
20 7 0.18
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (20 bp):
AATATAATAAAAATATATAT
Found at i:51255862 original size:17 final size:17
Alignment explanation
Indices: 51255840--51255873 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
51255830 AGGGTCAAAT
51255840 TAAAATAAAAATAAAAA
1 TAAAATAAAAATAAAAA
* *
51255857 TAAAATGAAATTAAAAA
1 TAAAATAAAAATAAAAA
51255874 ATTTAAAAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (17 bp):
TAAAATAAAAATAAAAA
Found at i:51260354 original size:13 final size:13
Alignment explanation
Indices: 51260336--51260365 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
51260326 ATCAAATCAG
51260336 TCAAACCGATAAA
1 TCAAACCGATAAA
51260349 TCAAACCGATAAA
1 TCAAACCGATAAA
51260362 TCAA
1 TCAA
51260366 TGACCTGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.23, G:0.07, T:0.17
Consensus pattern (13 bp):
TCAAACCGATAAA
Found at i:51274621 original size:23 final size:23
Alignment explanation
Indices: 51274595--51274640 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
51274585 ACACATAGCC
51274595 TGCTATTCAATAGACATCTTATG
1 TGCTATTCAATAGACATCTTATG
51274618 TGCTATTCAATAGACATCTTATG
1 TGCTATTCAATAGACATCTTATG
51274641 ATCACGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.39
Consensus pattern (23 bp):
TGCTATTCAATAGACATCTTATG
Found at i:51276480 original size:24 final size:24
Alignment explanation
Indices: 51276438--51276483 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
51276428 CACATCAGCA
*
51276438 TAATTATTTTTATTTTTTTTAATT
1 TAATTATTTTTATTATTTTTAATT
51276462 TAATT-TTTTTATTAATTTTTAA
1 TAATTATTTTTATT-ATTTTTAA
51276484 AGGGATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (24 bp):
TAATTATTTTTATTATTTTTAATT
Found at i:51277793 original size:16 final size:16
Alignment explanation
Indices: 51277772--51277802 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51277762 CATTTTATTT
*
51277772 ATATTAGGATAATTAA
1 ATATTAAGATAATTAA
51277788 ATATTAAGATAATTA
1 ATATTAAGATAATTA
51277803 TTATGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (16 bp):
ATATTAAGATAATTAA
Found at i:51283783 original size:9 final size:9
Alignment explanation
Indices: 51283771--51283829 Score: 66
Period size: 9 Copynumber: 6.6 Consensus size: 9
51283761 AAAAGTATAA
51283771 AATTAACCG
1 AATTAACCG
**
51283780 AATTAATTG
1 AATTAACCG
51283789 AATTAACCG
1 AATTAACCG
51283798 AATT-ACTCG
1 AATTAAC-CG
*
51283807 AATTAACAG
1 AATTAACCG
*
51283816 AATTAACTG
1 AATTAACCG
51283825 AATTA
1 AATTA
51283830 TTTGTATAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
8 2 0.05
9 38 0.90
10 2 0.05
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.31
Consensus pattern (9 bp):
AATTAACCG
Found at i:51283794 original size:18 final size:18
Alignment explanation
Indices: 51283771--51283829 Score: 82
Period size: 18 Copynumber: 3.3 Consensus size: 18
51283761 AAAAGTATAA
51283771 AATTAACCGAATTAATTG
1 AATTAACCGAATTAATTG
* *
51283789 AATTAACCGAATTACTCG
1 AATTAACCGAATTAATTG
* *
51283807 AATTAACAGAATTAACTG
1 AATTAACCGAATTAATTG
51283825 AATTA
1 AATTA
51283830 TTTGTATAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.31
Consensus pattern (18 bp):
AATTAACCGAATTAATTG
Found at i:51284149 original size:18 final size:18
Alignment explanation
Indices: 51284099--51284151 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
51284089 CTGAACCCTG
* *
51284099 ACCGAATTAATTCAGTTA
1 ACCGAATTTATTCGGTTA
* *
51284117 ACAGAATTTAGTCGGTTA
1 ACCGAATTTATTCGGTTA
*
51284135 ACCGAATTTTTTCGGTT
1 ACCGAATTTATTCGGTT
51284152 TTACCTGAAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (18 bp):
ACCGAATTTATTCGGTTA
Found at i:51289199 original size:16 final size:17
Alignment explanation
Indices: 51289178--51289210 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
51289168 TTGTTTTTCC
*
51289178 CTTTTTG-GTTTTGCTT
1 CTTTTTGAGTGTTGCTT
51289194 CTTTTTGAGTGTTGCTT
1 CTTTTTGAGTGTTGCTT
51289211 TGTATTAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.03, C:0.12, G:0.21, T:0.64
Consensus pattern (17 bp):
CTTTTTGAGTGTTGCTT
Found at i:51291696 original size:33 final size:33
Alignment explanation
Indices: 51291659--51291902 Score: 136
Period size: 33 Copynumber: 7.3 Consensus size: 33
51291649 TGGCCCTGCA
*
51291659 ATGGTCTTACATTAGTAGTGCCATAGCCCAGTT
1 ATGGTCTTACATTAATAGTGCCATAGCCCAGTT
* * * * *
51291692 ATGGTCTTATCGTCAA-AATACCATAGCCCAGCT
1 ATGGTCTTA-CATTAATAGTGCCATAGCCCAGTT
* * * * ***
51291725 ATGGTCTTACATATAATTACTACCATGGTCCAACC
1 ATGGTCTTACAT-TAA-TAGTGCCATAGCCCAGTT
* *
51291760 ATGGTCTTACGTTCAA-AGTGCCATAACCCAGTT
1 ATGGTCTTACATT-AATAGTGCCATAGCCCAGTT
* * *
51291793 ATAGTCTT--ATCAATAGAATGCCATAACCCAGTT
1 ATGGTCTTACATTAATAG--TGCCATAGCCCAGTT
* * * * ***
51291826 ATGGTCTTACATATAAACACTGCCATGGTCCAACC
1 ATGGTCTTACAT-T-AATAGTGCCATAGCCCAGTT
* * *
51291861 ATGGTCTTACGTTCATAGTGCCATAACCCAGTT
1 ATGGTCTTACATTAATAGTGCCATAGCCCAGTT
51291894 ATGGTCTTA
1 ATGGTCTTA
51291903 TCCGTCAATT
Statistics
Matches: 154, Mismatches: 45, Indels: 24
0.69 0.20 0.11
Matches are distributed among these distances:
30 2 0.01
31 3 0.02
32 2 0.01
33 92 0.60
34 5 0.03
35 47 0.31
37 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (33 bp):
ATGGTCTTACATTAATAGTGCCATAGCCCAGTT
Found at i:51291790 original size:101 final size:101
Alignment explanation
Indices: 51291675--51291910 Score: 348
Period size: 101 Copynumber: 2.3 Consensus size: 101
51291665 TTACATTAGT
* *
51291675 AGTGCCATAGCCCAGTTATGGTCTTATCGTCAAAATACCATAGCCCAGCTATGGTCTTACATATA
1 AGTGCCATAACCCAGTTATGGTCTTATCGTCAAAATACCATAACCCAGCTATGGTCTTACATATA
**
51291740 ATTACTACCATGGTCCAACCATGGTCTTACGTTCAA
66 AACACTACCATGGTCCAACCATGGTCTTACGTTCAA
* * * * *
51291776 AGTGCCATAACCCAGTTATAGTCTTATCAAT-AGAATGCCATAACCCAGTTATGGTCTTACATAT
1 AGTGCCATAACCCAGTTATGGTCTTATC-GTCAAAATACCATAACCCAGCTATGGTCTTACATAT
* *
51291840 AAACACTGCCATGGTCCAACCATGGTCTTACGTTCAT
65 AAACACTACCATGGTCCAACCATGGTCTTACGTTCAA
51291877 AGTGCCATAACCCAGTTATGGTCTTATCCGTCAA
1 AGTGCCATAACCCAGTTATGGTCTTAT-CGTCAA
51291911 TTCATCCTTT
Statistics
Matches: 118, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
101 115 0.97
102 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (101 bp):
AGTGCCATAACCCAGTTATGGTCTTATCGTCAAAATACCATAACCCAGCTATGGTCTTACATATA
AACACTACCATGGTCCAACCATGGTCTTACGTTCAA
Found at i:51293084 original size:14 final size:15
Alignment explanation
Indices: 51293053--51293087 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
51293043 TTTATTTCTA
51293053 TTAAAAATATAGAAT
1 TTAAAAATATAGAAT
*
51293068 TTAAATATATA-AAT
1 TTAAAAATATAGAAT
51293082 TTAAAA
1 TTAAAA
51293088 CCCTAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (15 bp):
TTAAAAATATAGAAT
Found at i:51296746 original size:19 final size:19
Alignment explanation
Indices: 51296708--51296747 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
51296698 AAAATATCAT
*
51296708 ATTAATTTAAATTGATTTG
1 ATTAATTTAAATTGACTTG
* *
51296727 ATTAATTTAATTTTACTTG
1 ATTAATTTAAATTGACTTG
51296746 AT
1 AT
51296748 CAAAATTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (19 bp):
ATTAATTTAAATTGACTTG
Found at i:51304686 original size:29 final size:29
Alignment explanation
Indices: 51304654--51304731 Score: 111
Period size: 29 Copynumber: 2.7 Consensus size: 29
51304644 AATACTGATA
51304654 TCATGGCCCGAAGCCAAATTAGCCAATAT
1 TCATGGCCCGAAGCCAAATTAGCCAATAT
* * * *
51304683 TCATGGCCTGAAGCCAAATCAGTCGATAT
1 TCATGGCCCGAAGCCAAATTAGCCAATAT
*
51304712 TCATGGCTCGAAGCCAAATT
1 TCATGGCCCGAAGCCAAATT
51304732 GGTATAACTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (29 bp):
TCATGGCCCGAAGCCAAATTAGCCAATAT
Found at i:51309517 original size:26 final size:26
Alignment explanation
Indices: 51309488--51309563 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 26
51309478 TCTTATCCCT
*
51309488 ATTTTACCCTTAATAAAATTTTGACG
1 ATTTTACCCTTGATAAAATTTTGACG
*
51309514 ATTTTA-CCTCTGATAAAATTTTAACG
1 ATTTTACCCT-TGATAAAATTTTGACG
*
51309540 ATTTTACCCTTGGTAAAATTTTGA
1 ATTTTACCCTTGATAAAATTTTGA
51309564 GAAAATATGT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
25 3 0.07
26 38 0.86
27 3 0.07
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.43
Consensus pattern (26 bp):
ATTTTACCCTTGATAAAATTTTGACG
Found at i:51309724 original size:12 final size:12
Alignment explanation
Indices: 51309707--51309731 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51309697 TGCAAATGAA
51309707 TCATTTCCATTT
1 TCATTTCCATTT
51309719 TCATTTCCATTT
1 TCATTTCCATTT
51309731 T
1 T
51309732 GGAAACTCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.60
Consensus pattern (12 bp):
TCATTTCCATTT
Found at i:51313108 original size:31 final size:33
Alignment explanation
Indices: 51313051--51313117 Score: 93
Period size: 31 Copynumber: 2.1 Consensus size: 33
51313041 GGAAACACCC
*
51313051 AAAAATTGAATATAGTTTAGTCACCAAAAAAGA
1 AAAAATTGAATATAGTTGAGTCACCAAAAAAGA
* *
51313084 AAAAATTG-A-ATAGTTGAGTGACCAAAAATGA
1 AAAAATTGAATATAGTTGAGTCACCAAAAAAGA
51313115 AAA
1 AAA
51313118 TTACTAATAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 22 0.71
32 1 0.03
33 8 0.26
ACGTcount: A:0.55, C:0.07, G:0.15, T:0.22
Consensus pattern (33 bp):
AAAAATTGAATATAGTTGAGTCACCAAAAAAGA
Found at i:51313714 original size:11 final size:11
Alignment explanation
Indices: 51313690--51313729 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
51313680 TTAAAAGATA
*
51313690 TTTTTAAAACAT
1 TTTTTATAA-AT
51313702 TTTTTATAAATT
1 TTTTTATAAA-T
51313714 TTTTTATAAAT
1 TTTTTATAAAT
51313725 TTTTT
1 TTTTT
51313730 GAATTTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 7 0.27
12 19 0.73
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (11 bp):
TTTTTATAAAT
Found at i:51332711 original size:21 final size:21
Alignment explanation
Indices: 51332686--51332746 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
51332676 TGTTTTGAGG
51332686 TAAAAAAATATTTAGAATAA-T
1 TAAAAAAATATTTA-AATAATT
*
51332707 TAAAAATATTATTTAAATAATT
1 TAAAAA-AATATTTAAATAATT
* *
51332729 TGAAAAAATTATCTAAAT
1 T-AAAAAAATATTTAAAT
51332747 TTATCACCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 11 0.31
22 19 0.54
23 5 0.14
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (21 bp):
TAAAAAAATATTTAAATAATT
Found at i:51333877 original size:2 final size:2
Alignment explanation
Indices: 51333872--51333902 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
51333862 ATATATATAT
51333872 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
51333903 TGCTGCTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:51337690 original size:17 final size:18
Alignment explanation
Indices: 51337658--51337692 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
51337648 GGAATTTGGG
*
51337658 GAGTTTTGTCTTTTTATT
1 GAGTTTTCTCTTTTTATT
51337676 GAGTTTTCT-TTTTTATT
1 GAGTTTTCTCTTTTTATT
51337693 ATCCTATGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.11, C:0.06, G:0.14, T:0.69
Consensus pattern (18 bp):
GAGTTTTCTCTTTTTATT
Found at i:51341323 original size:12 final size:12
Alignment explanation
Indices: 51341306--51341332 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
51341296 CATTCTGTAA
51341306 CAACTCAATTTT
1 CAACTCAATTTT
51341318 CAACTCAATTTT
1 CAACTCAATTTT
51341330 CAA
1 CAA
51341333 TGGTGTCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (12 bp):
CAACTCAATTTT
Found at i:51345555 original size:22 final size:21
Alignment explanation
Indices: 51345530--51345588 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 21
51345520 CGACTCGTAT
51345530 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACT-TTCAGCTCAATA
* *
51345552 GAGCTTACCATTTTAGCTCATTA
1 GAGCTTA-C-TTTCAGCTCAATA
51345575 GAGCTTACTATTCA
1 GAGCTTACT-TTCA
51345589 TCAGCTCAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 1 0.03
22 11 0.35
23 18 0.58
24 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (21 bp):
GAGCTTACTTTCAGCTCAATA
Found at i:51352291 original size:25 final size:24
Alignment explanation
Indices: 51352213--51352446 Score: 94
Period size: 25 Copynumber: 9.2 Consensus size: 24
51352203 ATACACCACA
* * * *
51352213 GCTCTTATGAGCGTCCTGATAATAG
1 GCTCTCATGAGCTTCCCGTTAAT-G
* ** * *
51352238 GCTCTCACGAGCTTCCTATTATTTA
1 GCTCTCATGAGCTTCCCGTTA-ATG
*
51352263 GCTCTCATGAGCATCCCGTTAGATG
1 GCTCTCATGAGCTTCCCGTTA-ATG
* * *
51352288 GCTCTGACGAGCTTCTCGATTAATG
1 GCTCTCATGAGCTTCCCG-TTAATG
* * *
51352313 GCTCTCTTGAGCTTCCCGTTTACG
1 GCTCTCATGAGCTTCCCGTTAATG
* * * *
51352337 GCT-TATATGAGCTTTCTGATAATTG
1 GCTCT-CATGAGCTTCCCGTTAA-TG
* * * *
51352362 GATCTCCA-AAGCTTCCCGATAAAAG
1 GCTCT-CATGAGCTTCCCG-TTAATG
* *
51352387 GCTCTCACATGAGCTTCCCGATAAAAG
1 GCTCT--CATGAGCTTCCCG-TTAATG
51352414 GCTCTCACATGAGCTTCCCGATTAATG
1 GCTCT--CATGAGCTTCCCG-TTAATG
51352441 GCTCTC
1 GCTCTC
51352447 TGAAGCTACT
Statistics
Matches: 156, Mismatches: 45, Indels: 16
0.72 0.21 0.07
Matches are distributed among these distances:
23 1 0.01
24 18 0.12
25 81 0.52
26 10 0.06
27 46 0.29
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (24 bp):
GCTCTCATGAGCTTCCCGTTAATG
Found at i:51352317 original size:50 final size:50
Alignment explanation
Indices: 51352237--51352332 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
51352227 CCTGATAATA
* *
51352237 GGCTCTCACGAGCTTCCTATTATTTAGCTCTCATGAGCATCCCGTTAGAT
1 GGCTCTCACGAGCTTCCGATTATATAGCTCTCATGAGCATCCCGTTAGAT
* * * *
51352287 GGCTCTGACGAGCTTCTCGATTA-ATGGCTCTCTTGAGCTTCCCGTT
1 GGCTCTCACGAGCTTC-CGATTATATAGCTCTCATGAGCATCCCGTT
51352333 TACGGCTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
50 34 0.87
51 5 0.13
ACGTcount: A:0.17, C:0.28, G:0.21, T:0.34
Consensus pattern (50 bp):
GGCTCTCACGAGCTTCCGATTATATAGCTCTCATGAGCATCCCGTTAGAT
Found at i:51352406 original size:27 final size:27
Alignment explanation
Indices: 51352371--51352446 Score: 134
Period size: 27 Copynumber: 2.8 Consensus size: 27
51352361 GGATCTCCAA
51352371 AGCTTCCCGATAAAAGGCTCTCACATG
1 AGCTTCCCGATAAAAGGCTCTCACATG
51352398 AGCTTCCCGATAAAAGGCTCTCACATG
1 AGCTTCCCGATAAAAGGCTCTCACATG
* *
51352425 AGCTTCCCGATTAATGGCTCTC
1 AGCTTCCCGATAAAAGGCTCTC
51352447 TGAAGCTACT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (27 bp):
AGCTTCCCGATAAAAGGCTCTCACATG
Found at i:51352410 original size:52 final size:54
Alignment explanation
Indices: 51352343--51352446 Score: 122
Period size: 52 Copynumber: 2.0 Consensus size: 54
51352333 TACGGCTTAT
* * **
51352343 ATGAGCTTTCTGATAATTGGATCTC-CA-AAGCTTCCCGATAAAAGGCTCTCAC
1 ATGAGCTTCCCGATAAAAGGATCTCACATAAGCTTCCCGATAAAAGGCTCTCAC
* * * *
51352395 ATGAGCTTCCCGATAAAAGGCTCTCACATGAGCTTCCCGATTAATGGCTCTC
1 ATGAGCTTCCCGATAAAAGGATCTCACATAAGCTTCCCGATAAAAGGCTCTC
51352447 TGAAGCTACT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
52 20 0.48
53 2 0.05
54 20 0.48
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (54 bp):
ATGAGCTTCCCGATAAAAGGATCTCACATAAGCTTCCCGATAAAAGGCTCTCAC
Found at i:51354526 original size:22 final size:23
Alignment explanation
Indices: 51354501--51354546 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
51354491 CAACCAAATC
51354501 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
51354523 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
51354546 A
1 A
51354547 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:51354552 original size:23 final size:23
Alignment explanation
Indices: 51354508--51354552 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
51354498 ATCAATTCAA
*
51354508 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
51354531 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
51354553 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:51362850 original size:49 final size:49
Alignment explanation
Indices: 51362754--51362942 Score: 145
Period size: 49 Copynumber: 3.8 Consensus size: 49
51362744 TTAGCTCCCA
* * * *
51362754 TGAGCATCCCGTTATATGGCTC-TCACGAGCTTCTCAATTAATAGCTCTCT
1 TGAGCTTCCCG-TATATGGCTCGTCATGAGCTTCCCAA-TAATGGCTCTCT
*
51362804 TGAGCTTCCCGTTTATGGCTCGT-ATGAGCTTCCCAATAATTGGCTCTC-
1 TGAGCTTCCCGTATATGGCTCGTCATGAGCTTCCCAATAA-TGGCTCTCT
* * * * * * *
51362852 CGAAGCTTCCCGATAAAAGTCTCTCTCATGAGCTTCCTGATTAATGGCTCTCT
1 TG-AGCTTCCCG-TATATGGCTC-GTCATGAGCTTCC-CAATAATGGCTCTCT
* *
51362905 AGAGCTACCCG-ATATTGGCTCG-CATGAGCTTCCCAATA
1 TGAGCTTCCCGTATA-TGGCTCGTCATGAGCTTCCCAATA
51362943 TTTGGCTTGC
Statistics
Matches: 109, Mismatches: 21, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
48 7 0.06
49 47 0.43
50 19 0.17
51 5 0.05
52 26 0.24
53 5 0.05
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (49 bp):
TGAGCTTCCCGTATATGGCTCGTCATGAGCTTCCCAATAATGGCTCTCT
Found at i:51362909 original size:25 final size:26
Alignment explanation
Indices: 51362753--51362938 Score: 115
Period size: 25 Copynumber: 7.4 Consensus size: 26
51362743 TTTAGCTCCC
*
51362753 ATGAGCATCCCG-TTATATGGCTCTC-
1 ATGAGCTTCCCGATTA-ATGGCTCTCT
* * * *
51362778 ACGAGCTTCTCAATTAATAGCTCTCT
1 ATGAGCTTCCCGATTAATGGCTCTCT
* *
51362804 -TGAGCTTCCCG-TTTATGGCTC-GT
1 ATGAGCTTCCCGATTAATGGCTCTCT
*
51362827 ATGAGCTTCCC-AATAATTGGCTCTC-
1 ATGAGCTTCCCGATTAA-TGGCTCTCT
* * * *
51362852 -CGAAGCTTCCCGATAAAAGTCTCTCT
1 ATG-AGCTTCCCGATTAATGGCTCTCT
*
51362878 CATGAGCTTCCTGATTAATGGCTCTCT
1 -ATGAGCTTCCCGATTAATGGCTCTCT
* * *
51362905 A-GAGCTACCCGA-TATTGGCTCGC-
1 ATGAGCTTCCCGATTAATGGCTCTCT
51362928 ATGAGCTTCCC
1 ATGAGCTTCCC
51362939 AATATTTGGC
Statistics
Matches: 120, Mismatches: 29, Indels: 25
0.69 0.17 0.14
Matches are distributed among these distances:
23 2 0.02
24 38 0.32
25 53 0.44
26 7 0.06
27 19 0.16
28 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.32
Consensus pattern (26 bp):
ATGAGCTTCCCGATTAATGGCTCTCT
Found at i:51362933 original size:24 final size:25
Alignment explanation
Indices: 51362896--51362964 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 25
51362886 TCCTGATTAA
* * *
51362896 TGGCTCTCTAGAGCTACCCGATA-T
1 TGGCTCGCAAGAGCTACCCAATATT
* *
51362920 TGGCTCGCATGAGCTTCCCAATATT
1 TGGCTCGCAAGAGCTACCCAATATT
* *
51362945 TGGCTTGCAAGAGCTTCCCA
1 TGGCTCGCAAGAGCTACCCA
51362965 TTACATGGCT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
24 18 0.49
25 19 0.51
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (25 bp):
TGGCTCGCAAGAGCTACCCAATATT
Found at i:51362958 original size:25 final size:24
Alignment explanation
Indices: 51362905--51362987 Score: 76
Period size: 25 Copynumber: 3.4 Consensus size: 24
51362895 ATGGCTCTCT
* * *
51362905 AGAGCTACCCGATATTGGCTCGCA
1 AGAGCTTCCCAATATTGGCTTGCA
*
51362929 TGAGCTTCCCAATATTTGGCTTGCA
1 AGAGCTTCCCAATA-TTGGCTTGCA
* * *
51362954 AGAGCTTCCCATTACATGGCTTACA
1 AGAGCTTCCCAATA-TTGGCTTGCA
*
51362979 TGAGCTTCC
1 AGAGCTTCC
51362988 TGTTACATGG
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 11 0.23
25 37 0.77
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (24 bp):
AGAGCTTCCCAATATTGGCTTGCA
Found at i:51362960 original size:101 final size:101
Alignment explanation
Indices: 51362773--51362963 Score: 244
Period size: 101 Copynumber: 1.9 Consensus size: 101
51362763 CGTTATATGG
* * * *
51362773 CTCTCACGAGCTTCTCAATTAATAGCTCTCTTGAGCTTCCCGTTTATGGCTCGTATGAGCTTCCC
1 CTCTCACGAGCTTCTCAATTAATAGCTCTCTAGAGCTACCCGTATATGGCTCGCATGAGCTTCCC
*
51362838 AATAATTGGCTCTCCGAAGCTTCCCGATAAAAGTCT
66 AATAATTGGCTCTCCAAAGCTTCCCGATAAAAGTCT
* * *
51362874 CTCTCATGAGCTTC-CTGATTAATGGCTCTCTAGAGCTACCCG-ATATTGGCTCGCATGAGCTTC
1 CTCTCACGAGCTTCTC-AATTAATAGCTCTCTAGAGCTACCCGTATA-TGGCTCGCATGAGCTTC
* *
51362937 CCAATATTTGGCT-TGCAAGAGCTTCCC
64 CCAATAATTGGCTCTCCAA-AGCTTCCC
51362964 ATTACATGGC
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
100 6 0.08
101 71 0.92
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (101 bp):
CTCTCACGAGCTTCTCAATTAATAGCTCTCTAGAGCTACCCGTATATGGCTCGCATGAGCTTCCC
AATAATTGGCTCTCCAAAGCTTCCCGATAAAAGTCT
Found at i:51362993 original size:25 final size:25
Alignment explanation
Indices: 51362930--51362999 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
51362920 TGGCTCGCAT
* ** *
51362930 GAGCTTCCCAATATTTGGCTTGCAA
1 GAGCTTCCCATTACATGGCTTACAA
*
51362955 GAGCTTCCCATTACATGGCTTACAT
1 GAGCTTCCCATTACATGGCTTACAA
**
51362980 GAGCTTCCTGTTACATGGCT
1 GAGCTTCCCATTACATGGCT
51363000 CGAAACAGCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCATTACATGGCTTACAA
Found at i:51364266 original size:20 final size:19
Alignment explanation
Indices: 51364243--51364296 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
51364233 TAGACTATGA
51364243 ACCACTTCATTTACATACTT
1 ACCA-TTCATTTACATACTT
*
51364263 ACCATTCCATTTACTTACTT
1 ACCATT-CATTTACATACTT
*
51364283 TCCATTCTATTTAC
1 ACCATTC-ATTTAC
51364297 TTAGCATAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 3 0.10
20 27 0.90
ACGTcount: A:0.26, C:0.30, G:0.00, T:0.44
Consensus pattern (19 bp):
ACCATTCATTTACATACTT
Found at i:51364297 original size:20 final size:20
Alignment explanation
Indices: 51364250--51364299 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
51364240 TGAACCACTT
*
51364250 CATTTACATACTTACCATTC
1 CATTTACTTACTTACCATTC
*
51364270 CATTTACTTACTTTCCATTC
1 CATTTACTTACTTACCATTC
*
51364290 TATTTACTTA
1 CATTTACTTA
51364300 GCATAAGCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (20 bp):
CATTTACTTACTTACCATTC
Found at i:51366098 original size:17 final size:18
Alignment explanation
Indices: 51366063--51366101 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
51366053 TATTTAATAA
51366063 TAAAATAACATATAAAAT
1 TAAAATAACATATAAAAT
51366081 TAAAATAA-AT-TAAAAAT
1 TAAAATAACATAT-AAAAT
51366098 TAAA
1 TAAA
51366102 CTGTACAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 1 0.05
17 11 0.55
18 8 0.40
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAAATAACATATAAAAT
Found at i:51370842 original size:6 final size:7
Alignment explanation
Indices: 51370826--51370850 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51370816 TTTCTCATAT
51370826 AAAATGA
1 AAAATGA
51370833 AAAATGA
1 AAAATGA
51370840 AAAATGA
1 AAAATGA
51370847 AAAA
1 AAAA
51370851 GAATTAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (7 bp):
AAAATGA
Found at i:51377659 original size:31 final size:31
Alignment explanation
Indices: 51377624--51377685 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
51377614 CATGAAATAA
51377624 GTATGGATGTTTGCTAATTACTCGGTAAGTT
1 GTATGGATGTTTGCTAATTACTCGGTAAGTT
51377655 GTATGGATGTTTGCTAATTACTCGGTAAGTT
1 GTATGGATGTTTGCTAATTACTCGGTAAGTT
51377686 TACTTTACGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.10, G:0.26, T:0.42
Consensus pattern (31 bp):
GTATGGATGTTTGCTAATTACTCGGTAAGTT
Found at i:51378854 original size:21 final size:22
Alignment explanation
Indices: 51378821--51378861 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
51378811 ACAATTTATG
*
51378821 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
51378842 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
51378862 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:51381800 original size:383 final size:383
Alignment explanation
Indices: 51380954--51382105 Score: 2216
Period size: 383 Copynumber: 3.0 Consensus size: 383
51380944 AATCATTAGT
* * *
51380954 TTTTGATTTCGTGGGTGATTTTGAAAGTTACCATTGATGAGTACTGGTTGTTTATGATGAATTAA
1 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
*
51381019 CATGGAATTGAAGCTTTAACTTAGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
66 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
* *
51381084 TTTCAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTTTAAATATCGAAG
131 TTTCAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
51381149 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGT-GG
196 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
51381213 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
261 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
51381278 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
326 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
51381336 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
1 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
*
51381401 CATGGAATTGAAGCTTTAACTTTGTTATGTGATTATTTCATCAAGTGATTTTAATAGAAAATGAT
66 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
51381466 TTTCAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
131 TTTCAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
51381531 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
196 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
51381596 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
261 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
51381661 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
326 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
51381719 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
1 TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
51381784 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
66 CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
*
51381849 TTTTAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
131 TTTCAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
51381914 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
196 GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
51381979 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
261 AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
*
51382044 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATAAATAA
326 TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
51382102 TTTT
1 TTTT
51382106 ATATTATAGA
Statistics
Matches: 759, Mismatches: 10, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
382 250 0.33
383 509 0.67
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.36
Consensus pattern (383 bp):
TTTTGATTTCATGGGTGATTTTGAAAGTTACCATTGATGAGTGCTGGGTGTTTATGATGAATTAA
CATGGAATTGAAGCTTTAACTTTGTTATGTGATGATTTCATCAAGTGATTTTAATAGAAAATGAT
TTTCAAAACTAAATTGTGAAAATCTTAAGAATTAGGGTTTGGTACTGAAATTCTAAATATCAAAG
GCTGTATAGTAGCCTAAAATAATTAGAGAAATTTTTAATTGAGAAAATATAGCTCAATTGGTGGG
AAAATTGATATGGGACTAAATTGTAAAAACTGTAAAAGTTAGGGTAAATGTGTAAATTTAAAAAT
TGAAGGGCATAAATTGTGAAGTGAATTAGAATTGAATTAGATGCTGATGAATGAATAA
Found at i:51382590 original size:33 final size:33
Alignment explanation
Indices: 51382517--51382594 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 33
51382507 GTATATATAT
* *
51382517 GTGTAAGACCATAGCTGGGCTATGGCATCATGA
1 GTGTAAGACCATAACTGGGCTATGGCATCACGA
* *
51382550 -TGATAAGACCATAACTGGGTTGTGGC-TCTACGA
1 GTG-TAAGACCATAACTGGGCTATGGCATC-ACGA
51382583 GTGTAAGACCAT
1 GTGTAAGACCAT
51382595 GGCAATATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
32 4 0.11
33 32 0.84
34 2 0.05
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (33 bp):
GTGTAAGACCATAACTGGGCTATGGCATCACGA
Found at i:51388830 original size:20 final size:20
Alignment explanation
Indices: 51388764--51388830 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
51388754 ATTTTGATAA
*
51388764 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
51388784 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
51388804 ACATGATATGTATGGTATGC
1 ACATGATATGTATGATATGC
51388824 ACATGAT
1 ACATGAT
51388831 GTAATCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:51388914 original size:23 final size:23
Alignment explanation
Indices: 51388881--51388998 Score: 166
Period size: 23 Copynumber: 5.1 Consensus size: 23
51388871 AGGAAGTGAA
* *
51388881 AAAGGGATTATGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
51388904 AAAGGGCTTATGTCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
51388927 AAAGGGCTTATACCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
51388950 AAAGGGCTTATG-CCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
51388972 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
51388996 AAA
1 AAA
51388999 AGAGGCTAGG
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.11
23 66 0.79
24 9 0.11
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:51389251 original size:31 final size:31
Alignment explanation
Indices: 51389213--51389276 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
51389203 CGTTTACAGT
51389213 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
51389244 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51389275 AA
1 AA
51389277 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:51396025 original size:11 final size:11
Alignment explanation
Indices: 51395989--51396044 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
51395979 CATGGTATGT
51395989 ATGATATGCAC
1 ATGATATGCAC
* *
51396000 ATGAAATG--T
1 ATGATATGCAC
51396009 ATGATATGCAC
1 ATGATATGCAC
*
51396020 ATGATATG--T
1 ATGATATGCAC
51396029 ATGATATGCAC
1 ATGATATGCAC
51396040 ATGAT
1 ATGAT
51396045 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:51396044 original size:20 final size:20
Alignment explanation
Indices: 51395978--51396044 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
51395968 ATTTTGATAA
*
51395978 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
51395998 ACATGAAATGTATGATATGC
1 ACATGATATGTATGATATGC
51396018 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
51396038 ACATGAT
1 ACATGAT
51396045 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:51396125 original size:23 final size:23
Alignment explanation
Indices: 51396095--51396189 Score: 156
Period size: 23 Copynumber: 4.1 Consensus size: 23
51396085 AGGAAGTGAA
51396095 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
51396118 AAAGGGCTTATGCCCGAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
51396141 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
51396163 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
51396187 AAA
1 AAA
51396190 AGAGGCTAGG
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
22 9 0.13
23 48 0.72
24 10 0.15
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:51396439 original size:31 final size:31
Alignment explanation
Indices: 51396404--51396467 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
51396394 CGTTTGCAGT
51396404 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
51396435 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51396466 AA
1 AA
51396468 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:51399074 original size:21 final size:24
Alignment explanation
Indices: 51399031--51399079 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 24
51399021 GTTTGAAGCA
51399031 CTTCATAAAATTAAAAGTTATAAAC
1 CTTCATAAAATT-AAAGTTATAAAC
51399056 CTTCATAAAA-T-AAG-TATAAAC
1 CTTCATAAAATTAAAGTTATAAAC
51399077 CTT
1 CTT
51399080 TACTAATGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 10 0.42
22 3 0.12
24 1 0.04
25 10 0.42
ACGTcount: A:0.49, C:0.14, G:0.04, T:0.33
Consensus pattern (24 bp):
CTTCATAAAATTAAAGTTATAAAC
Found at i:51403708 original size:37 final size:37
Alignment explanation
Indices: 51403658--51403731 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
51403648 ATAACGGAAC
51403658 ACAAAGTATTCTGAAGGTCAAACCAAAAAGAGTTCGG
1 ACAAAGTATTCTGAAGGTCAAACCAAAAAGAGTTCGG
51403695 ACAAAGTATTCTGAAGGTCAAACCAAAAAGAGTTCGG
1 ACAAAGTATTCTGAAGGTCAAACCAAAAAGAGTTCGG
51403732 CTGATAAGGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (37 bp):
ACAAAGTATTCTGAAGGTCAAACCAAAAAGAGTTCGG
Found at i:51406021 original size:38 final size:37
Alignment explanation
Indices: 51405965--51406043 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 37
51405955 TAACCCGGAT
51405965 ATTTTTCCAGCACTTAGCCTGCGGACTTTAAGTCCAG
1 ATTTTTCCAGCACTTAGCCTGCGGACTTTAAGTCCAG
*
51406002 ATTTATTCCAGCA-TATAGCCTGCGGACTTTAAGTCCGG
1 ATTT-TTCCAGCACT-TAGCCTGCGGACTTTAAGTCCAG
51406040 ATTT
1 ATTT
51406044 CTTCTTTTAC
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
37 5 0.13
38 34 0.87
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (37 bp):
ATTTTTCCAGCACTTAGCCTGCGGACTTTAAGTCCAG
Found at i:51409081 original size:52 final size:52
Alignment explanation
Indices: 51408995--51409102 Score: 182
Period size: 52 Copynumber: 2.1 Consensus size: 52
51408985 ATAAAAGTTC
* *
51408995 ACTTCCTC-ATTTGATATTGATTTGAATATGGTGTTTCAACTTTAGTGCATT
1 ACTTCATCTATTTGATATTGATTTGAATAAGGTGTTTCAACTTTAGTGCATT
*
51409046 TCTTCATCTATTTGATATTGATTTGAATAAGGTGTTTCAACTTTAGTGCATT
1 ACTTCATCTATTTGATATTGATTTGAATAAGGTGTTTCAACTTTAGTGCATT
51409098 ACTTC
1 ACTTC
51409103 TACTAGATGT
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
51 6 0.12
52 46 0.88
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.47
Consensus pattern (52 bp):
ACTTCATCTATTTGATATTGATTTGAATAAGGTGTTTCAACTTTAGTGCATT
Found at i:51410332 original size:20 final size:20
Alignment explanation
Indices: 51410309--51410346 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
51410299 TTATTTTTTT
51410309 AATT-TATTGATGCTTTTTAG
1 AATTATATTGAT-CTTTTTAG
*
51410329 AATTATATTTATCTTTTT
1 AATTATATTGATCTTTTT
51410347 TTTTCTTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.61
Consensus pattern (20 bp):
AATTATATTGATCTTTTTAG
Found at i:51410871 original size:36 final size:36
Alignment explanation
Indices: 51410831--51410903 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
51410821 AATAGTTTTC
*
51410831 TATATTATAGGAAGTAGATGGCGAG-TAGGAGTAGTT
1 TATATTATAGGAAGTAGAGGGCG-GTTAGGAGTAGTT
* *
51410867 TATATTTTAGGAAGTAGAGGGTGGTTAGGAGTAGTT
1 TATATTATAGGAAGTAGAGGGCGGTTAGGAGTAGTT
51410903 T
1 T
51410904 TCCTATTTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
35 1 0.03
36 32 0.97
ACGTcount: A:0.30, C:0.01, G:0.34, T:0.34
Consensus pattern (36 bp):
TATATTATAGGAAGTAGAGGGCGGTTAGGAGTAGTT
Found at i:51427337 original size:54 final size:55
Alignment explanation
Indices: 51427237--51427342 Score: 126
Period size: 54 Copynumber: 1.9 Consensus size: 55
51427227 GTCCTCAGGC
* * *
51427237 TCAACTCACCTTTCCCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCCCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * * *
51427291 TCAACCCACCTCTCGCAATATGAGTTGGTTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCCCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
51427343 TAGAAATTGA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
54 32 0.74
55 11 0.26
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (55 bp):
TCAACCCACCTCTCCCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:51427351 original size:13 final size:13
Alignment explanation
Indices: 51427333--51427357 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51427323 TGAACAACAT
51427333 AAATTGAAAATAG
1 AAATTGAAAATAG
51427346 AAATTGAAAATA
1 AAATTGAAAATA
51427358 CCTCAGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTGAAAATAG
Found at i:51427477 original size:87 final size:86
Alignment explanation
Indices: 51427291--51427487 Score: 227
Period size: 87 Copynumber: 2.3 Consensus size: 86
51427281 ATTAAAAGGT
* * * *
51427291 TCAACCCACCTCTCGCAATATGAGTTGGTTCTTGAACAACATAAATTGAAAATAGAAATTGAAAA
1 TCAACTCACCTCTCGCAATATGAGCTGATTCTTGAACAACATAAATTGAAAACAGAAATTGAAAA
* * *
51427356 TACCTCAGCGTGACCTAAGGC
66 GACCTCAGCGTGACCCAAGCC
* * *
51427377 TCAACTCACCTCTCGCAATATGAGCTGATTTTTGAA-AA-GTAGGAATTGAAAAGCATAAATTGA
1 TCAACTCACCTCTCGCAATATGAGCTGATTCTTGAACAACATA--AATTGAAAA-CAGAAATTGA
* *
51427440 AAAGACCTCAGCGTGCCCCGAGCC
63 AAAGACCTCAGCGTGACCCAAGCC
**
51427464 TTGACTCACCTCTCGCAATATGAG
1 TCAACTCACCTCTCGCAATATGAG
51427488 TATTTTCTAA
Statistics
Matches: 94, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
84 2 0.02
85 2 0.02
86 41 0.44
87 49 0.52
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (86 bp):
TCAACTCACCTCTCGCAATATGAGCTGATTCTTGAACAACATAAATTGAAAACAGAAATTGAAAA
GACCTCAGCGTGACCCAAGCC
Found at i:51427541 original size:69 final size:70
Alignment explanation
Indices: 51427430--51427667 Score: 291
Period size: 73 Copynumber: 3.4 Consensus size: 70
51427420 AATTGAAAAG
* * * *
51427430 CATAAATTGAAAAGACCTCAGCGTGCCCCGAGCCTTGACTCACCTCTCGCAATATGAGT-ATTTT
1 CATAAACTAAAAATACCTCAGCGTGCCCCGAGACTTGACTCACCTCTCGCAATATGAGTAATTTT
51427494 CT-AAA
66 -TGAAA
* * * *
51427499 CATAAACTAAAAATACCTCAGCGTGCCCCGAGACTCGACTCACCCCTCGTAATATGAGCTGATTT
1 CATAAACTAAAAATACCTCAGCGTGCCCCGAGACTTGACTCACCTCTCGCAATATGAG-TAATTT
51427564 TTGAAA
65 TTGAAA
* * * * * *
51427570 CAAAAGGAATTAAAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAAT
1 CATAA--ACTAAAAATACCTCAGCGTGCCCCGAGACTTGACTCACCTCTCGCAATATGAGT-AAT
51427635 TTTTGAAA
63 TTTTGAAA
51427643 CATAAACTAAAAATACCTCAGCGTG
1 CATAAACTAAAAATACCTCAGCGTG
51427668 TGACCTGAGG
Statistics
Matches: 143, Mismatches: 20, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
69 51 0.36
70 2 0.01
71 30 0.21
72 1 0.01
73 59 0.41
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.25
Consensus pattern (70 bp):
CATAAACTAAAAATACCTCAGCGTGCCCCGAGACTTGACTCACCTCTCGCAATATGAGTAATTTT
TGAAA
Found at i:51427612 original size:73 final size:69
Alignment explanation
Indices: 51427430--51427738 Score: 278
Period size: 73 Copynumber: 4.3 Consensus size: 69
51427420 AATTGAAAAG
* * * * *
51427430 CATAAATTGAAAAGACCTCAGCGTGCCCCGAGCCTTGACTCACCTCTCGCAATATGAGTATTTTC
1 CATAAAATAAAAATACCTCAGCGTGACCCGAGGCTTGACTCACCTCTCGCAATATGAGTATTTT-
51427495 T-AAA
65 TGAAA
* * * * * *
51427499 CATAAACTAAAAATACCTCAGCGTGCCCCGAGACTCGACTCACCCCTCGTAATATGAGCTGATTT
1 CATAAAATAAAAATACCTCAGCGTGACCCGAGGCTTGACTCACCTCTCGCAATATGAG-T-ATTT
51427564 TTGAAA
64 TTGAAA
* * *
51427570 CAAAAGGAATTAAAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAAT
1 CATAA--AATAAAAATACCTCAGCGTGACCCGAGGCTTGACTCACCTCTCGCAATATGAGT--AT
51427635 TTTTGAAA
62 TTTTGAAA
* * ** ** *
51427643 CATAAACTAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
1 CATAAAATAAAAATACCTCAGC--GTGACCCGAGGCTTGACTCACCTCTCGCAATATGAG-T-A-
51427708 TTTTTGAAAA
61 TTTTTG-AAA
* * *
51427718 CATGAATTAAAGATACCTCAG
1 CATAAAATAAAAATACCTCAG
51427739 AGTACCCAAA
Statistics
Matches: 200, Mismatches: 29, Indels: 16
0.82 0.12 0.07
Matches are distributed among these distances:
69 51 0.25
70 2 0.01
71 27 0.14
72 1 0.00
73 91 0.46
74 7 0.04
75 21 0.10
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.27
Consensus pattern (69 bp):
CATAAAATAAAAATACCTCAGCGTGACCCGAGGCTTGACTCACCTCTCGCAATATGAGTATTTTT
GAAA
Found at i:51440471 original size:119 final size:119
Alignment explanation
Indices: 51440255--51440854 Score: 918
Period size: 119 Copynumber: 5.0 Consensus size: 119
51440245 AAATAAATTG
* ** **
51440255 AAGACAGCAGATCTAGA-CTTCAGACATTTATGTTGAAGCAGATCCAAGATGATTTGGTATTCTT
1 AAGATAGCAGATCTA-ACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTT
* *
51440319 GTGTTTGCAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
65 GTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
*
51440374 AAGATAGCAGATCTAACCTTCAGATGATTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
* * *
51440439 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCCGACATTCAAAAACA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC----TCA
*
51440497 AA-ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAGGATGATTTGGTATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
* * *
51440561 TGTTTACAAGGAGCAAATCGAGGACATAGCAGATTTGATTCTCAGGCGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* *
51440615 AAGATAGCAGACCTAATCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
51440680 TGTTTAC-AGGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGG-AACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* * * *
51440734 AATATAGTAGATCTAACCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGCATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
* *
51440799 TATTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
51440853 AA
1 AA
51440855 CAGACTCAAG
Statistics
Matches: 440, Mismatches: 33, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
118 8 0.02
119 319 0.73
120 3 0.01
122 106 0.24
123 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (119 bp):
AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
Found at i:51440683 original size:241 final size:238
Alignment explanation
Indices: 51440260--51440854 Score: 935
Period size: 241 Copynumber: 2.5 Consensus size: 238
51440250 AATTGAAGAC
** *
51440260 AGCAGATCTAGA-CTTCAGACATTTATGTTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTT
1 AGCAGATCTA-ACCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTT
* * *
51440324 TGCAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTA
65 TACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAGCAGACCTA
51440389 ACCTTCAGATGATTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGG-AAC
130 ACCTTCAGATGATTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC-AGGAAAC
*
51440453 AAATCGAGGACATAGCAGATTTGACTCTCCGACATTCAAAAACAAA-AT
194 AAATCGAGGACATAGCAGATTTGACTCTCAGACATTC----ACAAATAT
* *
51440501 AGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAGGATGATTTGGTATTCTTGTGTTT
1 AGCAGATCTAACCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
* * *
51440566 ACAAGGAGCAAATCGAGGACATAGCAGATTTGATTCTCAGGCGTTCTCAAAGATAGCAGACCTAA
66 ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAGCAGACCTAA
* *
51440631 TCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAGGAAACAA
131 CCTTCAGATGATTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAGGAAACAA
* *
51440696 ATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
196 ATCGAGGACATAGCAGATTTGACTCTCAGACATTCACAAATAT
* * *
51440739 AGTAGATCTAACCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGCATTCTTGTATTT
1 AGCAGATCTAACCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
*
51440804 ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
66 ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
51440855 CAGACTCAAG
Statistics
Matches: 326, Mismatches: 25, Indels: 9
0.91 0.07 0.03
Matches are distributed among these distances:
237 4 0.01
238 109 0.33
240 4 0.01
241 209 0.64
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (238 bp):
AGCAGATCTAACCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAGCAGACCTAA
CCTTCAGATGATTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAGGAAACAA
ATCGAGGACATAGCAGATTTGACTCTCAGACATTCACAAATAT
Found at i:51440923 original size:83 final size:83
Alignment explanation
Indices: 51440778--51441047 Score: 369
Period size: 83 Copynumber: 3.2 Consensus size: 83
51440768 GAAGCAGATC
* ** * *
51440778 CAAGATGATTTGGCATTCTTGTATTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
51440843 GATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
51440861 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATAACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
51440926 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * * * * *
51440944 CAAGATGGTTTAAGTACCCTCGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGACTCTC
1 CAAGATGATTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
* *
51441009 AAATGTTTTCAGACAGACT
65 AAATGTTCTCAAACAGACT
*
51441028 CAAGATGATTTGACATCCTT
1 CAAGATGATTTGGCATCCTT
51441048 ACAAATCGAA
Statistics
Matches: 163, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
83 90 0.55
84 73 0.45
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:51441001 original size:84 final size:83
Alignment explanation
Indices: 51440802--51441034 Score: 349
Period size: 84 Copynumber: 2.8 Consensus size: 83
51440792 ATTCTTGTAT
* * *
51440802 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAACAGACTCAAGAT
1 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
* * *
51440867 GGTTTGGCATCCTTGTGC
66 GGTTTAGCACCCTCGTGC
*
51440885 TTACAAGGAACAAATCGAGGACATTGCAGATATAACTCTCAAATGTTCTCAAACAGACTCAAGAT
1 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
*
51440950 GGTTTAAGTACCCTCGTGC
66 GGTTT-AGCACCCTCGTGC
* * * *
51440969 TTACAAGGAACAAGTCGAGGACCTTGCAGATATGACTCTCAAATGTTTTCAGACAGACTCAAGAT
1 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
51441034 G
66 G
51441035 ATTTGACATC
Statistics
Matches: 136, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
83 66 0.49
84 70 0.51
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (83 bp):
TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
GGTTTAGCACCCTCGTGC
Found at i:51442756 original size:24 final size:24
Alignment explanation
Indices: 51442729--51442780 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
51442719 TATATGTTTA
*
51442729 TATTACATTTTATTATATAATCTT
1 TATTACATTTTATTATATAATATT
** * *
51442753 TATTATGTTTTATTTTATATTATT
1 TATTACATTTTATTATATAATATT
51442777 TATT
1 TATT
51442781 GTTTTTTTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (24 bp):
TATTACATTTTATTATATAATATT
Found at i:51442851 original size:20 final size:19
Alignment explanation
Indices: 51442818--51442855 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
51442808 TGTATCGCAA
51442818 ATTATATTATTTATGTTTAT
1 ATTATATTATTTAT-TTTAT
51442838 ATTATA-TATATTATTTTA
1 ATTATATTAT-TTATTTTA
51442856 AAAATGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (19 bp):
ATTATATTATTTATTTTAT
Found at i:51445739 original size:21 final size:22
Alignment explanation
Indices: 51445704--51445746 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
51445694 ATTATTATTG
*
51445704 ATTAATTAGTTTAATTAGATAA
1 ATTAATTAGTTTAATTAAATAA
*
51445726 ATTAATT-TTTTAATTAAATAA
1 ATTAATTAGTTTAATTAAATAA
51445747 TTTTCTTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (22 bp):
ATTAATTAGTTTAATTAAATAA
Found at i:51445755 original size:17 final size:17
Alignment explanation
Indices: 51445723--51445755 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
51445713 TTTAATTAGA
51445723 TAAATTAATTTTTTAAT
1 TAAATTAATTTTTTAAT
51445740 TAAA-TAATTTTCTTAA
1 TAAATTAATTTT-TTAA
51445756 CCCAATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
TAAATTAATTTTTTAAT
Found at i:51448526 original size:18 final size:18
Alignment explanation
Indices: 51448503--51448539 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
51448493 TATCATGCCA
*
51448503 TTTATATCTTTTAATAAT
1 TTTATATCTTTTAAAAAT
*
51448521 TTTATATTTTTTAAAAAT
1 TTTATATCTTTTAAAAAT
51448539 T
1 T
51448540 AAAAAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTATATCTTTTAAAAAT
Found at i:51453531 original size:21 final size:21
Alignment explanation
Indices: 51453507--51453559 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
51453497 CACTGTTTCT
*
51453507 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
* *
51453528 AATCTCACCGCTTCAGTAACT
1 AATCTCACCGCTACAGTAACC
51453549 AATCTCACCGC
1 AATCTCACCGC
51453560 CACCACTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.28, C:0.38, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:51458717 original size:24 final size:25
Alignment explanation
Indices: 51458690--51458736 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
51458680 AATTCCATTG
* *
51458690 TCTATTAAAGAT-TCATTCATTTCT
1 TCTATTAAAAATATCATCCATTTCT
51458714 TCTATTAAAAATATCATCCATTT
1 TCTATTAAAAATATCATCCATTT
51458737 TGCTTGAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.34, C:0.17, G:0.02, T:0.47
Consensus pattern (25 bp):
TCTATTAAAAATATCATCCATTTCT
Found at i:51462481 original size:46 final size:46
Alignment explanation
Indices: 51462425--51462643 Score: 200
Period size: 46 Copynumber: 4.7 Consensus size: 46
51462415 GTTATTGTTG
* *
51462425 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATGAGA
* *
51462471 GCTAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATG-AGA
* * * * *
51462517 GCCAGTGTAAGACATATTTGGGATATGCATCGGC-TACGAGATGATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGATGAGA
*
51462563 G-TCAGTGTAAGACCATGT-TAGGGACATGGCATC-G-ATTTGAGAT-ATGA
1 GCT-AGTGTAAGA-CATGTCT-GGGACAT-GCATCGGCA-TCGAGATGA-GA
*
51462610 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
51462644 TCACTTTACC
Statistics
Matches: 145, Mismatches: 15, Indels: 24
0.79 0.08 0.13
Matches are distributed among these distances:
45 2 0.01
46 89 0.61
47 47 0.32
48 7 0.05
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATGAGA
Found at i:51466825 original size:21 final size:21
Alignment explanation
Indices: 51466801--51466862 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
51466791 AGTTTATTTA
*
51466801 ATATTT-AATATTTTATCTTTT
1 ATATTTAAATATTAT-TCTTTT
51466822 ATATTTAAATATTATTCTTTT
1 ATATTTAAATATTATTCTTTT
**
51466843 GATA-GAAAATATTATTCTTT
1 -ATATTTAAATATTATTCTTT
51466863 AATAGTAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 26 0.72
22 10 0.28
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (21 bp):
ATATTTAAATATTATTCTTTT
Done.