Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 160 of 250
Found at i:51466826 original size:28 final size:29
Alignment explanation
Indices: 51466778--51466834 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
51466768 AATATTTTAA
51466778 TAATATTTTATATAGTTTATTT-AATATT
1 TAATATTTTATATAGTTTATTTAAATATT
* *
51466806 TAATATTTTATCT-TTTATATTTAAATATT
1 TAATATTTTATATAGTT-TATTTAAATATT
51466835 ATTCTTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 2 0.08
28 17 0.68
29 6 0.24
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (29 bp):
TAATATTTTATATAGTTTATTTAAATATT
Found at i:51466872 original size:20 final size:21
Alignment explanation
Indices: 51466827--51466872 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
51466817 CTTTTATATT
*
51466827 TAAATATTATTCTTTTGATAG
1 TAAATATTATTCTTTTAATAG
*
51466848 AAAATATTATTC-TTTAATAG
1 TAAATATTATTCTTTTAATAG
51466868 TAAAT
1 TAAAT
51466873 TGATGGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (21 bp):
TAAATATTATTCTTTTAATAG
Found at i:51469678 original size:29 final size:30
Alignment explanation
Indices: 51469611--51469679 Score: 95
Period size: 29 Copynumber: 2.3 Consensus size: 30
51469601 TATCAAAGTT
*
51469611 ATACATGAACTATGATTTAATATTCAATTTG
1 ATACATGAACTATGATTT-ATATGCAATTTG
* *
51469642 ATATATGAACTTTGATTT-TATGCAATTTG
1 ATACATGAACTATGATTTATATGCAATTTG
51469671 ATACATGAA
1 ATACATGAA
51469680 TATTAAACTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 18 0.53
31 16 0.47
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.42
Consensus pattern (30 bp):
ATACATGAACTATGATTTATATGCAATTTG
Found at i:51470615 original size:21 final size:20
Alignment explanation
Indices: 51470591--51470639 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
51470581 AATTTCAATT
51470591 AAATTTTGTTAAAATTTT-TAA
1 AAATTTTG-TAAAATTTTAT-A
*
51470612 AAATTCTCGTAAAATTTTATA
1 AAATT-TTGTAAAATTTTATA
51470633 AAATTTT
1 AAATTTT
51470640 AACACCAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
20 1 0.04
21 20 0.83
22 3 0.12
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (20 bp):
AAATTTTGTAAAATTTTATA
Found at i:51477728 original size:20 final size:20
Alignment explanation
Indices: 51477705--51477742 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
51477695 ACTAAAAAAA
*
51477705 TTTAAACTAATTTTTAAATT
1 TTTAAAATAATTTTTAAATT
51477725 TTTAAAATAATTTTTAAA
1 TTTAAAATAATTTTTAAA
51477743 ATTAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTAAAATAATTTTTAAATT
Found at i:51477751 original size:20 final size:20
Alignment explanation
Indices: 51477712--51477751 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
51477702 AAATTTAAAC
* **
51477712 TAATTTTTAAATTTTTAAAA
1 TAATTTTTAAAATTAAAAAA
51477732 TAATTTTTAAAATTAAAAAA
1 TAATTTTTAAAATTAAAAAA
51477752 ATAAAAATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATTTTTAAAATTAAAAAA
Found at i:51479339 original size:17 final size:17
Alignment explanation
Indices: 51479317--51479359 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
51479307 TATATCGAAC
51479317 TATTCAAACTCAATGAG
1 TATTCAAACTCAATGAG
51479334 TATTCAAACTCAATGAG
1 TATTCAAACTCAATGAG
51479351 TATTCAAAC
1 TATTCAAAC
51479360 ATTCACTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (17 bp):
TATTCAAACTCAATGAG
Found at i:51479488 original size:18 final size:18
Alignment explanation
Indices: 51479467--51479749 Score: 144
Period size: 18 Copynumber: 15.3 Consensus size: 18
51479457 GAACAATTAT
51479467 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAG
* * *
51479485 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAG
* * **
51479503 TTATTCAATAATAACCAG
1 TTATTCAGTAACAGTCAG
*
51479521 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTA---A-C-A--G-TCAG
*
51479547 TTA-TCTAGTAACAGTCAA
1 TTATTC-AGTAACAGTCAG
* *
51479565 TTATTCAGGAA-AATCAG
1 TTATTCAGTAACAGTCAG
* * *
51479582 GTATTCAGTAACAATTAAG
1 TTATTCAGTAAC-AGTCAG
51479601 TTATTCAGTAACAGTCA-
1 TTATTCAGTAACAGTCAG
* * *
51479618 TTCATTCTGTGACAATCAG
1 TT-ATTCAGTAACAGTCAG
* * *
51479637 TTATTTAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAG
* *
51479655 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAG
51479673 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAGTC-AG
* * *
51479691 ATATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* * *
51479709 TTATCCGGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* *
51479727 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAGTCAG
51479745 TTATT
1 TTATT
51479750 TTATACCTTT
Statistics
Matches: 198, Mismatches: 49, Indels: 36
0.70 0.17 0.13
Matches are distributed among these distances:
17 16 0.08
18 145 0.73
19 21 0.11
21 2 0.01
22 1 0.01
23 2 0.01
25 2 0.01
26 9 0.05
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAG
Found at i:51479507 original size:36 final size:36
Alignment explanation
Indices: 51479454--51479749 Score: 186
Period size: 36 Copynumber: 8.0 Consensus size: 36
51479444 TCATTAACAA
* * *
51479454 TCAG-AACAATTATTTATTCAGTAACAGTCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
* * * *
51479489 TCGGTAACAATCAATTATTCAATAATAACCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
* * * *
51479525 TCAGTATCGATCAATTGATCGGTTATCTAGTAACAGTCAATTAT
1 TCAGTAACAATCAATT-A-----T-TC-AGTAACAATCAGTTAT
* ** *
51479569 TCAGGAA-AATCAGGTATTCAGTAACAATTAAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAA-TCAGTTAT
* * *
51479605 TCAGTAACAGTC-ATTCATTCTGTGACAATCAGTTAT
1 TCAGTAACAATCAATT-ATTCAGTAACAATCAGTTAT
* ** * *
51479641 TTAGTAATGATCAATTATTCAGTAATATTCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
* * * *
51479677 TCAGTAACAGTCTAA-TATCCAGTAACAGTCAATTAT
1 TCAGTAACAATC-AATTATTCAGTAACAATCAGTTAT
* * * *
51479713 CCGGTAACAGTCAATTATTCAGTAATAATCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
51479749 T
1 T
51479750 TTATACCTTT
Statistics
Matches: 193, Mismatches: 53, Indels: 29
0.70 0.19 0.11
Matches are distributed among these distances:
35 12 0.06
36 136 0.70
37 20 0.10
42 2 0.01
43 7 0.04
44 16 0.08
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35
Consensus pattern (36 bp):
TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
Found at i:51479865 original size:6 final size:6
Alignment explanation
Indices: 51479854--51479883 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
51479844 CCGAATCCGG
*
51479854 AACAGT AACAGT AACAGT AACAGT AGCAGT
1 AACAGT AACAGT AACAGT AACAGT AACAGT
51479884 TCGGTACATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.17
Consensus pattern (6 bp):
AACAGT
Found at i:51481777 original size:31 final size:32
Alignment explanation
Indices: 51481721--51481783 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
51481711 CACACTTGTC
*
51481721 ATAATTTAATATATTTATTACATAAAAATCTT
1 ATAATATAATATATTTATTACATAAAAATCTT
*
51481753 ATAATATAAT-TATTTAATTA-ATAAATATCTT
1 ATAATATAATATATTT-ATTACATAAAAATCTT
51481784 TTATAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 15 0.54
32 13 0.46
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (32 bp):
ATAATATAATATATTTATTACATAAAAATCTT
Found at i:51491235 original size:40 final size:40
Alignment explanation
Indices: 51491152--51491243 Score: 107
Period size: 40 Copynumber: 2.4 Consensus size: 40
51491142 GTACCTTTTG
* * *
51491152 GTGTGTAGGGTTGGATGGGTTGATTATATCCCTAAACTTT
1 GTGTGTAGGGTTGGATGGGTCGATTATATCCCCAAACTGT
* * *
51491192 GTGTGTAGGGTTGGGTGGGTCGATTCTATCCCCACA-TG-
1 GTGTGTAGGGTTGGATGGGTCGATTATATCCCCAAACTGT
*
51491230 GTGTGTTGGGTTGG
1 GTGTGTAGGGTTGG
51491244 TTGGAGATGG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
38 13 0.29
39 1 0.02
40 31 0.69
ACGTcount: A:0.14, C:0.12, G:0.37, T:0.37
Consensus pattern (40 bp):
GTGTGTAGGGTTGGATGGGTCGATTATATCCCCAAACTGT
Found at i:51494297 original size:46 final size:46
Alignment explanation
Indices: 51494161--51494334 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
51494151 GTTATTGTGG
* ** * *
51494161 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGAGT
* * * * * * *
51494207 GCTTGTATAAGACCTTGTCTGGGATATGGAATCGGCATCGAGACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGACGAGT
* *
51494255 GCTACTGTAAGACATGTTTGGGACATGCATCGGCCTCAAGACGTAAGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACG--AGT
51494303 -C-AGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
51494335 TACGAGATGA
Statistics
Matches: 101, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
46 53 0.52
47 24 0.24
48 24 0.24
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGAGT
Found at i:51494350 original size:46 final size:46
Alignment explanation
Indices: 51494162--51494370 Score: 164
Period size: 46 Copynumber: 4.5 Consensus size: 46
51494152 TTATTGTGGG
* *
51494162 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA-G-AG-
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTAC--GA-GACGTAGT
* * * * *
51494208 CTTGTATAAGACCTTGTCTGGGATATGGAATCGGC-ATCGAGACG-AGT
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGACGTAGT
* * *
51494255 GCTACTGTAAGACATGTTTGGGACATGCATCGGCCT-CAAGACGTAAGT
1 -CTAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGACGT-AGT
*
51494303 C-AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACG-TAGT
51494349 C-AGTGTAAGACCATGTCTGGGA
1 CTAGTGTAAGA-CATGTCTGGGA
51494371 TATGGCATTG
Statistics
Matches: 132, Mismatches: 18, Indels: 25
0.75 0.10 0.14
Matches are distributed among these distances:
45 4 0.03
46 71 0.54
47 38 0.29
48 19 0.14
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGTAGT
Found at i:51498557 original size:46 final size:46
Alignment explanation
Indices: 51498424--51498559 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
51498414 TTATCTTCGA
* * * * * *
51498424 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
*
51498470 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAAACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
51498516 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
51498560 TTCAGAAAAC
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 4 0.05
46 76 0.95
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:51505083 original size:46 final size:45
Alignment explanation
Indices: 51505030--51505247 Score: 208
Period size: 46 Copynumber: 4.7 Consensus size: 45
51505020 TTGTGGGCTA
*
51505030 GTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCT
1 GTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATGAGAG-CT
* *
51505076 GTGTAAGACCATGTCTGGGGCATGGCATCGG-CACCGAGATGAGTGCT
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGAGAGCT
* * * *
51505123 AATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA-AGTCA
1 -GTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-AGAG-CT
* * *
51505170 GTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTT
1 GTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCT
* *
51505215 AGTGTAAGACAATGTTTGGGATATGGCATCGGC
1 -GTGTAAGAC-ATGTCTGGGACAT-GCATCGGC
51505248 ACTCTACCCA
Statistics
Matches: 143, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
45 1 0.01
46 68 0.48
47 44 0.31
48 29 0.20
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (45 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCT
Found at i:51507025 original size:13 final size:13
Alignment explanation
Indices: 51507009--51507035 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51506999 AAAGAATGAA
51507009 TATAATATTTTTT
1 TATAATATTTTTT
51507022 TATAATATTTTTT
1 TATAATATTTTTT
51507035 T
1 T
51507036 TTCTCTTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TATAATATTTTTT
Found at i:51508238 original size:21 final size:21
Alignment explanation
Indices: 51508225--51508282 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
51508215 GTGCATCATT
51508225 GCCACACGGTCGTGTCATTTA
1 GCCACACGGTCGTGTCATTTA
*
51508246 GTCACACGGTCGTGTCATTTA
1 GCCACACGGTCGTGTCATTTA
*
51508267 GTCACACGGTCGTGTC
1 GCCACACGGTCGTGTC
51508283 TTCCTTGTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.17, C:0.28, G:0.26, T:0.29
Consensus pattern (21 bp):
GCCACACGGTCGTGTCATTTA
Found at i:51511723 original size:24 final size:24
Alignment explanation
Indices: 51511682--51511728 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
51511672 ATGAAATAAG
51511682 AATTATATATGCTGTTTAATAAATTA
1 AATTATATAT-CTGTTT-ATAAATTA
*
51511708 AATTATATAT-TTTTTATAAAT
1 AATTATATATCTGTTTATAAAT
51511729 ATTAAAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 4 0.20
26 10 0.50
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (24 bp):
AATTATATATCTGTTTATAAATTA
Found at i:51517755 original size:25 final size:25
Alignment explanation
Indices: 51517717--51517783 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
51517707 TCTCGAGCCA
*
51517717 TATAACAGGAAGCTCATGTGAGTTG
1 TATAACAGGAAGCTCATCTGAGTTG
* * *
51517742 TATGAC-GAGAAGCTTATCTGGGTTG
1 TATAACAG-GAAGCTCATCTGAGTTG
51517767 TATAACAGGAAGCTCAT
1 TATAACAGGAAGCTCAT
51517784 AAGAGCCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 1 0.03
25 32 0.94
26 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.28
Consensus pattern (25 bp):
TATAACAGGAAGCTCATCTGAGTTG
Found at i:51517803 original size:24 final size:24
Alignment explanation
Indices: 51517774--51517854 Score: 76
Period size: 24 Copynumber: 3.3 Consensus size: 24
51517764 TTGTATAACA
51517774 GGAAGCTCATAAGAGCCATAATCG
1 GGAAGCTCATAAGAGCCATAATCG
*
51517798 GGAAGCTCATATGAGCCAATAAT-G
1 GGAAGCTCATAAGAGCC-ATAATCG
* * * *
51517822 GGTAGTTC-TGAAGAGCCATTAAACA
1 GGAAGCTCAT-AAGAGCCA-TAATCG
51517847 GGAAGCTC
1 GGAAGCTC
51517855 CGGATCGAGA
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
23 2 0.04
24 32 0.71
25 11 0.24
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.20
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATAATCG
Found at i:51517917 original size:25 final size:26
Alignment explanation
Indices: 51517886--51517954 Score: 88
Period size: 25 Copynumber: 2.7 Consensus size: 26
51517876 GCCATATCGT
*
51517886 GAAGCTC-CGGAGAGCCATTAATCAA
1 GAAGCTCACGAAGAGCCATTAATCAA
* * *
51517911 GAAGCTCACAAAGAGCC-TTTATCGA
1 GAAGCTCACGAAGAGCCATTAATCAA
51517936 GAAGCTCACGAAGAGCCAT
1 GAAGCTCACGAAGAGCCAT
51517955 ATATCAGGAC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
25 29 0.78
26 8 0.22
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (26 bp):
GAAGCTCACGAAGAGCCATTAATCAA
Found at i:51520157 original size:418 final size:419
Alignment explanation
Indices: 51519365--51520160 Score: 1145
Period size: 418 Copynumber: 1.9 Consensus size: 419
51519355 TTACACATTG
* *
51519365 TACATGGTTGAAATAATGGGTTGATTCTCTAGGCAAGGCACTGTAGTCATAGGTGTTTATCGAAC
1 TACATGGTTGAAATAATGGGTTGATTCTCTAAGCAAGGCACTGTAGACATAGGTGTTTATCGAAC
* * * *
51519430 AGCATAACCAATTGTTTTTGTATTACTGTTCTTTATTTGTTATACACCTCAAGTATAACTGCTCA
66 AACATAACCAATTGCTTTTGTATTACTGTTATTCATTTGTTATACACCTCAAGTATAACTGCTCA
* *
51519495 TATAATATTACTTACAAAAATAAACTATTCTTGCATTTGATATTAGAGTCAACACTTGACATAGT
131 TATAATATTACTTAC-AAAATAAACTATTCTTACATTTGACATTAGAGTCAACACTTGACATAGT
* * * * *
51519560 AAGTGGTATTTCTGGTGTTGATTTTTGCTAGTAAGGGAAGGTTTATTTGTCTCATGTGCCTTAGT
195 AAGTGATATTTCTAGTGTTGATTTTTGCTAGCAAGGGAAGGTTCATTTGTCTCACGTGCCTTAGT
* * * * *
51519625 GCTAGATTGATCCAACTACAAGTACTAGAAGGCAAGGATGAATGCATTTATAAAGTTAATGGATG
260 GCTAGATGGATCCAACTACAAGTAATAGAAGGCAAGGATGAAGGCATTCATAAACTTAATGGATG
* ** * *
51519690 AACAGGCCTGGTGTACAGTTTTTACTAGATAGGAGCCACCTATAACTAAAACCAATTGTTACACT
325 AAAAGGCCTGGCATACAGTTCTTACTAGATAGGAGCCACCTACAACTAAAACCAATTGTTACACT
51519755 AGTGAGTGGTAAGACTTAAATTGTTCACTA
390 AGTGAGTGGTAAGACTTAAATTGTTCACTA
* *
51519785 TACATGGTTGAAATAGTGGGTTGATTCTCTAAGTAAGGCACTGTAGACATAGGTGTTTA-CTGAA
1 TACATGGTTGAAATAATGGGTTGATTCTCTAAGCAAGGCACTGTAGACATAGGTGTTTATC-GAA
* *
51519849 CAACATAACCAATTGCTTTTGTATTATTGTTATTCATTTTTTATACACCTCAAGTATAACTGCTC
65 CAACATAACCAATTGCTTTTGTATTACTGTTATTCATTTGTTATACACCTCAAGTATAACTGCTC
* *
51519914 A-ATAATATTACTTGC-AAATAGACTATTCTTACATTTGACATTAGAGTCTAACACTTGA-AGTA
130 ATATAATATTACTTACAAAATAAACTATTCTTACATTTGACATTAGAGTC-AACACTTGACA-TA
* * *
51519976 GTAAGTGATGTTTCTAGTGTTGATTTTTGCTAGCGATGGAAGGTTCATTTGTCTCACGT-CGCTT
193 GTAAGTGATATTTCTAGTGTTGATTTTTGCTAGCAAGGGAAGGTTCATTTGTCTCACGTGC-CTT
* * *
51520040 AGTGTTGGATGGATCCAACTACATGTAATAGAAGGCAAGGATGAAGGCATTCATAAACTTAATGG
257 AGTGCTAGATGGATCCAACTACAAGTAATAGAAGGCAAGGATGAAGGCATTCATAAACTTAATGG
* * **
51520105 ATGAAAAGGCCTGGCATATAGTTCTTACTAGAT-GAGAGTCGTCTACAACTAAAACC
322 ATGAAAAGGCCTGGCATACAGTTCTTACTAGATAG-GAGCCACCTACAACTAAAACC
51520161 TTAAGAGTTA
Statistics
Matches: 332, Mismatches: 39, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
417 33 0.10
418 167 0.50
419 14 0.04
420 118 0.36
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (419 bp):
TACATGGTTGAAATAATGGGTTGATTCTCTAAGCAAGGCACTGTAGACATAGGTGTTTATCGAAC
AACATAACCAATTGCTTTTGTATTACTGTTATTCATTTGTTATACACCTCAAGTATAACTGCTCA
TATAATATTACTTACAAAATAAACTATTCTTACATTTGACATTAGAGTCAACACTTGACATAGTA
AGTGATATTTCTAGTGTTGATTTTTGCTAGCAAGGGAAGGTTCATTTGTCTCACGTGCCTTAGTG
CTAGATGGATCCAACTACAAGTAATAGAAGGCAAGGATGAAGGCATTCATAAACTTAATGGATGA
AAAGGCCTGGCATACAGTTCTTACTAGATAGGAGCCACCTACAACTAAAACCAATTGTTACACTA
GTGAGTGGTAAGACTTAAATTGTTCACTA
Found at i:51521418 original size:122 final size:122
Alignment explanation
Indices: 51521201--51521444 Score: 461
Period size: 122 Copynumber: 2.0 Consensus size: 122
51521191 AGCCAACTAG
51521201 TACGTATCCAAATTAACATACATTGTTTCACCATCAAACAAGATAACTAAATTTATTTAATCCAC
1 TACGTATCCAAATTAACATACATTGTTTCACCATCAAACAAGATAACTAAATTTATTTAATCCAC
*
51521266 CCATATACTCATATATGTATAGATAGTCATTAAGAGGTGTTATTTGGGATGTCTTAA
66 CCATATACTCATATATGTATAGATAGTCATTAAGAGGTGGTATTTGGGATGTCTTAA
51521323 TACGTATCCAAATTAACATACATTGTTTCACCATCAAACAAGATAACTAAATTTATTTAATCCAC
1 TACGTATCCAAATTAACATACATTGTTTCACCATCAAACAAGATAACTAAATTTATTTAATCCAC
* *
51521388 CCATATACTTATATATGTGTAGATAGTCATTAAGAGGTGGTATTTGGGATGTCTTAA
66 CCATATACTCATATATGTATAGATAGTCATTAAGAGGTGGTATTTGGGATGTCTTAA
51521445 AGTGAGTCTC
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 119 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35
Consensus pattern (122 bp):
TACGTATCCAAATTAACATACATTGTTTCACCATCAAACAAGATAACTAAATTTATTTAATCCAC
CCATATACTCATATATGTATAGATAGTCATTAAGAGGTGGTATTTGGGATGTCTTAA
Found at i:51522271 original size:57 final size:57
Alignment explanation
Indices: 51522153--51522348 Score: 243
Period size: 56 Copynumber: 3.5 Consensus size: 57
51522143 ATTGTTTTGG
* * * * ** **
51522153 TAATAAACAACAATGGACAACAACAATTAAATA-TCAGTTTGACAGTTTAATTACAA
1 TAATAAATAACAATGAACAACAACAATTAAACACCCTTTTTGACAACTTAATTACAA
* * * *
51522209 TAATAAATAACAATGAAGAACAATAATTAAACACCCTTTTTGACAACTTAATTTCAG
1 TAATAAATAACAATGAACAACAACAATTAAACACCCTTTTTGACAACTTAATTACAA
* *
51522266 TAATAAATAACAATGAACAACAACAATTGAACACCCTTTTT-ACAACTTAATTGCAA
1 TAATAAATAACAATGAACAACAACAATTAAACACCCTTTTTGACAACTTAATTACAA
*
51522322 TAATAAATAACAATAAACAACAACAAT
1 TAATAAATAACAATGAACAACAACAAT
51522349 ATGAACAAAA
Statistics
Matches: 121, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
56 67 0.55
57 54 0.45
ACGTcount: A:0.51, C:0.16, G:0.06, T:0.27
Consensus pattern (57 bp):
TAATAAATAACAATGAACAACAACAATTAAACACCCTTTTTGACAACTTAATTACAA
Found at i:51524741 original size:63 final size:63
Alignment explanation
Indices: 51524669--51524855 Score: 182
Period size: 63 Copynumber: 3.0 Consensus size: 63
51524659 TAACTTGCTG
** * * * * *
51524669 TTTTGGGTGTAAAAACCACATGGCCAGGAACACGGGCGTGTGCCTAGGTCGTGTAACTCACTA
1 TTTTGGGTGTAAAAACCACACAGCCAGGAACACGAGCGTATGCCCAGGCCCTGTAACTCACTA
* *
51524732 TTTTGGGTGTAAAAACCACACAGCCAGGGACACGAGCGTATGCCCAGGCCCTGTAACTCACTG
1 TTTTGGGTGTAAAAACCACACAGCCAGGAACACGAGCGTATGCCCAGGCCCTGTAACTCACTA
** * * * * * *
51524795 TTTAT-AATAT-AAAACCACACAGCCAGGGACA-TAGGCATGTGCCCAGGCCATGTAACTCACT
1 TTT-TGGGTGTAAAAACCACACAGCCAGGAACACGA-GCGTATGCCCAGGCCCTGTAACTCACT
51524856 GTTTGTGCTT
Statistics
Matches: 106, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
61 1 0.01
62 45 0.42
63 59 0.56
64 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.21
Consensus pattern (63 bp):
TTTTGGGTGTAAAAACCACACAGCCAGGAACACGAGCGTATGCCCAGGCCCTGTAACTCACTA
Found at i:51524875 original size:62 final size:62
Alignment explanation
Indices: 51524743--51524859 Score: 182
Period size: 62 Copynumber: 1.9 Consensus size: 62
51524733 TTTGGGTGTA
* * *
51524743 AAAACCACACAGCCAGGGACACGAGCGTATGCCCAGGCCCTGTAACTCACTGTTTATAATAT
1 AAAACCACACAGCCAGGGACAAGAGCATATGCCCAGGCCATGTAACTCACTGTTTATAATAT
*
51524805 AAAACCACACAGCCAGGGACATAG-GCATGTGCCCAGGCCATGTAACTCACTGTTT
1 AAAACCACACAGCCAGGGACA-AGAGCATATGCCCAGGCCATGTAACTCACTGTTT
51524860 GTGCTTGAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
62 49 0.98
63 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.19
Consensus pattern (62 bp):
AAAACCACACAGCCAGGGACAAGAGCATATGCCCAGGCCATGTAACTCACTGTTTATAATAT
Found at i:51528943 original size:21 final size:21
Alignment explanation
Indices: 51528919--51528962 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
51528909 GAAAAAGGCA
*
51528919 AGAAAAAAAGAAAAGATAAAT
1 AGAAAAAAAGAAAAGAGAAAT
*
51528940 AGAAAAAAGGAAAAGAGAAAT
1 AGAAAAAAAGAAAAGAGAAAT
51528961 AG
1 AG
51528963 TTGAAGTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.07
Consensus pattern (21 bp):
AGAAAAAAAGAAAAGAGAAAT
Found at i:51536162 original size:21 final size:21
Alignment explanation
Indices: 51536103--51536163 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 21
51536093 GGGATAGCAT
*
51536103 TGGTATCAATTTGGAAAAATA
1 TGGTATCAATTTGGAAAAAAA
** * * *
51536124 TTTTA-AAAGTTGAAAAAAAAA
1 TGGTATCAATTTG-GAAAAAAA
51536145 TGGTATCAATTTGGAAAAA
1 TGGTATCAATTTGGAAAAA
51536164 TATTTTAAAA
Statistics
Matches: 27, Mismatches: 11, Indels: 4
0.64 0.26 0.10
Matches are distributed among these distances:
20 5 0.19
21 17 0.63
22 5 0.19
ACGTcount: A:0.49, C:0.03, G:0.16, T:0.31
Consensus pattern (21 bp):
TGGTATCAATTTGGAAAAAAA
Found at i:51536162 original size:42 final size:42
Alignment explanation
Indices: 51536103--51536185 Score: 166
Period size: 42 Copynumber: 2.0 Consensus size: 42
51536093 GGGATAGCAT
51536103 TGGTATCAATTTGGAAAAATATTTTAAAAGTTGAAAAAAAAA
1 TGGTATCAATTTGGAAAAATATTTTAAAAGTTGAAAAAAAAA
51536145 TGGTATCAATTTGGAAAAATATTTTAAAAGTTGAAAAAAAA
1 TGGTATCAATTTGGAAAAATATTTTAAAAGTTGAAAAAAAA
51536186 TTGAGAGTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.52, C:0.02, G:0.14, T:0.31
Consensus pattern (42 bp):
TGGTATCAATTTGGAAAAATATTTTAAAAGTTGAAAAAAAAA
Found at i:51536183 original size:21 final size:21
Alignment explanation
Indices: 51536117--51536184 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
51536107 ATCAATTTGG
51536117 AAAAATATTTTAAAAGTTGAA
1 AAAAATATTTTAAAAGTTGAA
* ** * * *
51536138 AAAAAAATGGTATCAATTTG-G
1 AAAAATATTTTA-AAAGTTGAA
51536159 AAAAATATTTTAAAAGTTGAA
1 AAAAATATTTTAAAAGTTGAA
51536180 AAAAA
1 AAAAA
51536185 ATTGAGAGTA
Statistics
Matches: 33, Mismatches: 12, Indels: 4
0.67 0.24 0.08
Matches are distributed among these distances:
20 5 0.15
21 23 0.70
22 5 0.15
ACGTcount: A:0.57, C:0.01, G:0.12, T:0.29
Consensus pattern (21 bp):
AAAAATATTTTAAAAGTTGAA
Found at i:51542134 original size:14 final size:14
Alignment explanation
Indices: 51542111--51542146 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
51542101 TTGTTTGACT
51542111 GAAAATGATTTCTG
1 GAAAATGATTTCTG
*
51542125 GAATATGATTTCTG
1 GAAAATGATTTCTG
51542139 GAAAATGA
1 GAAAATGA
51542147 CTTGTTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (14 bp):
GAAAATGATTTCTG
Found at i:51543340 original size:17 final size:17
Alignment explanation
Indices: 51543318--51543352 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
51543308 TATCATTAAT
*
51543318 ATTAATTGTATAACACA
1 ATTAATTATATAACACA
*
51543335 ATTAATTATATAATACA
1 ATTAATTATATAACACA
51543352 A
1 A
51543353 AATTGTAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.51, C:0.09, G:0.03, T:0.37
Consensus pattern (17 bp):
ATTAATTATATAACACA
Found at i:51545691 original size:16 final size:16
Alignment explanation
Indices: 51545667--51545705 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
51545657 AAATTTAGAA
51545667 TATAATTAAAA-ATAAT
1 TATAATTAAAATA-AAT
*
51545683 TATATTTAAAATAAAT
1 TATAATTAAAATAAAT
51545699 TATAATT
1 TATAATT
51545706 GAATAAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 19 0.95
17 1 0.05
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TATAATTAAAATAAAT
Found at i:51546209 original size:37 final size:37
Alignment explanation
Indices: 51546159--51546229 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
51546149 CTTGCTTTCG
*
51546159 ATTGAGGTGGAAACTTGAGAAGAGAAACAATCGGTCA
1 ATTGAGGTGGAAACTTGAGAAGAAAAACAATCGGTCA
51546196 ATTGAGGTGGAAACTTGAGAAGAAAAACAATCGG
1 ATTGAGGTGGAAACTTGAGAAGAAAAACAATCGG
51546230 ATAGTGGTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.42, C:0.10, G:0.30, T:0.18
Consensus pattern (37 bp):
ATTGAGGTGGAAACTTGAGAAGAAAAACAATCGGTCA
Found at i:51549483 original size:17 final size:18
Alignment explanation
Indices: 51549461--51549500 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
51549451 TAGGCCAAAT
51549461 TGGGCGTG-TGGACCACA
1 TGGGCGTGTTGGACCACA
*
51549478 TGGGCGTGTTGGCCCACA
1 TGGGCGTGTTGGACCACA
*
51549496 CGGGC
1 TGGGC
51549501 ATGTCACACG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.12, C:0.28, G:0.42, T:0.17
Consensus pattern (18 bp):
TGGGCGTGTTGGACCACA
Found at i:51562996 original size:11 final size:11
Alignment explanation
Indices: 51562969--51563019 Score: 57
Period size: 12 Copynumber: 4.4 Consensus size: 11
51562959 CTTCAAAAGT
*
51562969 AAATAAAAGACA
1 AAATAAAATA-A
*
51562981 AAATAAAATGA
1 AAATAAAATAA
51562992 AAATAAAAATAA
1 AAAT-AAAATAA
51563004 AAATAAAAATAA
1 AAAT-AAAATAA
51563016 AAAT
1 AAAT
51563020 GATAATAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
11 5 0.14
12 30 0.86
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:51563000 original size:6 final size:6
Alignment explanation
Indices: 51562980--51563019 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
51562970 AATAAAAGAC
*
51562980 AAAAT- AAAATG AAAATA AAAATA AAAATA AAAATA AAAAT
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT
51563020 GATAATAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 5 0.15
6 28 0.85
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:51564348 original size:17 final size:20
Alignment explanation
Indices: 51564314--51564352 Score: 57
Period size: 17 Copynumber: 2.1 Consensus size: 20
51564304 ATCAAAGTAG
51564314 TAAAAATAATAGTAATATCC
1 TAAAAATAATAGTAATATCC
51564334 TAAAAAT-ATA-T-ATATCC
1 TAAAAATAATAGTAATATCC
51564351 TA
1 TA
51564353 TCATTGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 1 0.05
19 3 0.16
20 7 0.37
ACGTcount: A:0.54, C:0.10, G:0.03, T:0.33
Consensus pattern (20 bp):
TAAAAATAATAGTAATATCC
Found at i:51570438 original size:28 final size:28
Alignment explanation
Indices: 51570386--51570440 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
51570376 GTTTCATTCA
51570386 AAACTATTTTAATCTTTTAATATATTTTT
1 AAACTATTTTAA-CTTTTAATATATTTTT
*
51570415 AAACTATTTTTAA-TTTTGATATATTT
1 AAACTA-TTTTAACTTTTAATATATTT
51570441 AATTTATGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 12 0.50
29 6 0.25
30 6 0.25
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (28 bp):
AAACTATTTTAACTTTTAATATATTTTT
Found at i:51570455 original size:16 final size:15
Alignment explanation
Indices: 51570423--51570463 Score: 64
Period size: 16 Copynumber: 2.7 Consensus size: 15
51570413 TTAAACTATT
51570423 TTTAATTTTGATATA
1 TTTAATTTTGATATA
*
51570438 TTTAATTTATGTTATA
1 TTTAATTT-TGATATA
51570454 TTTAATTTTG
1 TTTAATTTTG
51570464 TCTTTAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.63
Consensus pattern (15 bp):
TTTAATTTTGATATA
Found at i:51581740 original size:86 final size:86
Alignment explanation
Indices: 51581633--51581814 Score: 258
Period size: 86 Copynumber: 2.1 Consensus size: 86
51581623 GCGCCTATCT
* *
51581633 GGCCCACACGACCAAAATTGGCCTTGGCTATGTGGATCACACGGCCTGGCCTAAAATT-TCACAC
1 GGCCCACACGACCAAAATTGGCCTTGGCCATGTGGATCACACGGCCTGGCCCAAAATTCT-ACAC
* * *
51581697 GCCCATGTGGTTCACTCGTGTG
65 GCCCATGTGGTTCACCCATGCG
* * * *
51581719 GGCCCACACGACCCAAATTGGCCTTGGCCGTGTGGATCACACGGGCTGGCCCAGAATTCTACACG
1 GGCCCACACGACCAAAATTGGCCTTGGCCATGTGGATCACACGGCCTGGCCCAAAATTCTACACG
*
51581784 CCCGTGTGGTTCACCCATGCG
66 CCCATGTGGTTCACCCATGCG
51581805 GGCCCACACG
1 GGCCCACACG
51581815 TCCGTGTGGC
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 84 0.99
87 1 0.01
ACGTcount: A:0.20, C:0.34, G:0.26, T:0.20
Consensus pattern (86 bp):
GGCCCACACGACCAAAATTGGCCTTGGCCATGTGGATCACACGGCCTGGCCCAAAATTCTACACG
CCCATGTGGTTCACCCATGCG
Found at i:51584260 original size:60 final size:57
Alignment explanation
Indices: 51584128--51584262 Score: 153
Period size: 60 Copynumber: 2.3 Consensus size: 57
51584118 TTCATATAAT
* ** * *
51584128 AATAATTATATTAAGAATTTTATTAAATTATATATTATTTTATGAAATTATATTTAAT
1 AATAATTATATTAA-AATATGGTTAAATTATATATTATTTTATGAAAATATATTTAAC
* * *
51584186 AATAATTATGTTAAAATATGGTTAAATTATTTATTATTTTTATAATAAAATATATTTAAC
1 AATAATTATATTAAAATATGGTTAAATTATATATTA-TTTTAT--GAAAATATATTTAAC
*
51584246 AATAATTTTATTAAAAT
1 AATAATTATATTAAAAT
51584263 TTAATAACAA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 18 0.28
58 19 0.30
60 27 0.42
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.50
Consensus pattern (57 bp):
AATAATTATATTAAAATATGGTTAAATTATATATTATTTTATGAAAATATATTTAAC
Found at i:51584454 original size:16 final size:16
Alignment explanation
Indices: 51584433--51584487 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
51584423 TGAATTATTG
51584433 ATTACAGCTTTATTCC
1 ATTACAGCTTTATTCC
* *
51584449 ATTACAGCTCTATTCA
1 ATTACAGCTTTATTCC
* *
51584465 ATGACAGCCTTATTCC
1 ATTACAGCTTTATTCC
51584481 ATTACAG
1 ATTACAG
51584488 TGACCCAAAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.36
Consensus pattern (16 bp):
ATTACAGCTTTATTCC
Found at i:51584863 original size:15 final size:15
Alignment explanation
Indices: 51584822--51584863 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
51584812 CTCAAAAATT
51584822 AAGTATTGAAAAAAA
1 AAGTATTGAAAAAAA
*
51584837 AAGAATTG-AAAAAA
1 AAGTATTGAAAAAAA
*
51584851 AGGTATTGAAAAA
1 AAGTATTGAAAAA
51584864 TTAAATATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.64, C:0.00, G:0.17, T:0.19
Consensus pattern (15 bp):
AAGTATTGAAAAAAA
Found at i:51588517 original size:8 final size:8
Alignment explanation
Indices: 51588503--51588572 Score: 54
Period size: 8 Copynumber: 8.8 Consensus size: 8
51588493 AAGCAATAAC
51588503 AAATAAAT
1 AAATAAAT
* *
51588511 GAATAAAGG
1 AAATAAA-T
*
51588520 AATTAAAAT
1 AAATA-AAT
51588529 AAA-AAAT
1 AAATAAAT
51588536 AAATAAAT
1 AAATAAAT
51588544 AAAT-AAT
1 AAATAAAT
* *
51588551 ATATAATT
1 AAATAAAT
51588559 AAATAAAT
1 AAATAAAT
*
51588567 GAATAA
1 AAATAA
51588573 GCAGTTAAAT
Statistics
Matches: 47, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
7 12 0.26
8 28 0.60
9 5 0.11
10 2 0.04
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (8 bp):
AAATAAAT
Found at i:51588541 original size:4 final size:4
Alignment explanation
Indices: 51588525--51588572 Score: 55
Period size: 4 Copynumber: 12.5 Consensus size: 4
51588515 AAAGGAATTA
* * *
51588525 AAAT AAA- AAAT AAAT AAAT AAAT -AAT ATAT AATT AAAT AAAT GAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
51588571 AA
1 AA
51588573 GCAGTTAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
3 6 0.17
4 30 0.83
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:51588545 original size:15 final size:15
Alignment explanation
Indices: 51588525--51588572 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
51588515 AAAGGAATTA
51588525 AAATAAAAAATAAAT
1 AAATAAAAAATAAAT
* *
51588540 AAATAAATAATATAT
1 AAATAAAAAATAAAT
* *
51588555 AATTAAATAAATGAAT
1 AAATAAA-AAATAAAT
51588571 AA
1 AA
51588573 GCAGTTAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (15 bp):
AAATAAAAAATAAAT
Found at i:51588549 original size:19 final size:19
Alignment explanation
Indices: 51588525--51588566 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
51588515 AAAGGAATTA
51588525 AAATAAAAAATAAATAAAT
1 AAATAAAAAATAAATAAAT
* * *
51588544 AAATAATATATAATTAAAT
1 AAATAAAAAATAAATAAAT
51588563 AAAT
1 AAAT
51588567 GAATAAGCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
AAATAAAAAATAAATAAAT
Found at i:51588597 original size:56 final size:54
Alignment explanation
Indices: 51588503--51588608 Score: 126
Period size: 56 Copynumber: 1.9 Consensus size: 54
51588493 AAGCAATAAC
* *
51588503 AAATAAATGAATAAAGGAATTAAAATAAAAAATAAATAAATAAATAATATATAATT
1 AAATAAATGAATAAAGCAATTAAAATAAAAAAGAAAT-AATAAATAA-ATATAATT
* *
51588559 AAATAAATGAAT-AAGCAGTT-AAATGAATAAAAGGAATAATAAATAAATAT
1 AAATAAATGAATAAAGCAATTAAAAT-AA-AAAAGAAATAATAAATAAATAT
51588609 GTAAATAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
54 8 0.18
55 17 0.39
56 19 0.43
ACGTcount: A:0.65, C:0.01, G:0.08, T:0.25
Consensus pattern (54 bp):
AAATAAATGAATAAAGCAATTAAAATAAAAAAGAAATAATAAATAAATATAATT
Found at i:51590268 original size:256 final size:256
Alignment explanation
Indices: 51589811--51590323 Score: 920
Period size: 256 Copynumber: 2.0 Consensus size: 256
51589801 TTTTGGTGTA
* * * *
51589811 AAACGACCAAGGCGTTAGGCCTCAGGGAGTGTGCGCTGCAGAGGCACAAGGAGGGGGTGCGGTGT
1 AAACGACCAAGGCGTTAGGCCTAAGGGAGCGTGCGCTACAGAGGCACAAGGAGGGGGTGCGGTGC
51589876 ATTACAGTTTACGTCTTTTTTTTCTGAAAATGTTTTAAGTGTTTTGGGCTATGGGCTAGGGTGAA
66 ATTACAGTTTACGTCTTTTTTTTCTGAAAATGTTTTAAGTGTTTTGGGCTATGGGCTAGGGTGAA
* *
51589941 TTTGGGTTATATTGGGCCATTGTAATTTGGGCTGATAACTATTGTAAATGGACTTTGATACTTGG
131 TTTGGGTTATATTGGGCCATTGTAATTTGGGCTAATAACTATTGTAAATGGACTTTGATACTTGA
51590006 ACTTATTTGCTTATTTTTTGGTTTATTATTATTTTGATGGGCTCGAGAAAATTGGGCTATT
196 ACTTATTTGCTTATTTTTTGGTTTATTATTATTTTGATGGGCTCGAGAAAATTGGGCTATT
51590067 AAACGACCAAGGCGTTAGGCCTTAAGGG-GCGTGCGCTACAGAGGCACAAGGAGGGGGTGCGGTG
1 AAACGACCAAGGCGTTAGGCC-TAAGGGAGCGTGCGCTACAGAGGCACAAGGAGGGGGTGCGGTG
*
51590131 CATTACGGTTTACGTCTTTTTTTTCTGAAAATGTTTTAAGTGTTTTGGGCTATGGGCTAGGGTGA
65 CATTACAGTTTACGTCTTTTTTTTCTGAAAATGTTTTAAGTGTTTTGGGCTATGGGCTAGGGTGA
51590196 ATTTGGGTTATATTGGGCCATTGTAATTTGGGCTAATAACTATTGTAAATGGACTTTGATACTTG
130 ATTTGGGTTATATTGGGCCATTGTAATTTGGGCTAATAACTATTGTAAATGGACTTTGATACTTG
* * *
51590261 AACTTATTTGTTTATTTTTTGGTTTATTATTATTTTGATGGGCTCGGGCAAATTGGGCTATT
195 AACTTATTTGCTTATTTTTTGGTTTATTATTATTTTGATGGGCTCGAGAAAATTGGGCTATT
51590323 A
1 A
51590324 CAGCTACCCA
Statistics
Matches: 246, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
256 241 0.98
257 5 0.02
ACGTcount: A:0.22, C:0.12, G:0.28, T:0.37
Consensus pattern (256 bp):
AAACGACCAAGGCGTTAGGCCTAAGGGAGCGTGCGCTACAGAGGCACAAGGAGGGGGTGCGGTGC
ATTACAGTTTACGTCTTTTTTTTCTGAAAATGTTTTAAGTGTTTTGGGCTATGGGCTAGGGTGAA
TTTGGGTTATATTGGGCCATTGTAATTTGGGCTAATAACTATTGTAAATGGACTTTGATACTTGA
ACTTATTTGCTTATTTTTTGGTTTATTATTATTTTGATGGGCTCGAGAAAATTGGGCTATT
Found at i:51590603 original size:44 final size:43
Alignment explanation
Indices: 51590548--51590940 Score: 202
Period size: 44 Copynumber: 8.8 Consensus size: 43
51590538 TGATCTGTTC
* *
51590548 CACTGCTACTTCAAGGAGATAATG-TTTATAGCTTTAATATGCT
1 CACTGCAACTTCAAGGAGATAA-GATTTATAGCTTCAATATGCT
* * * *
51590591 CTACTACAACTTC-AGAGAGATAAGATTTGCTATCTTCAATCTGCT
1 C-ACTGCAACTTCAAG-GAGATAAGATTT-ATAGCTTCAATATGCT
* * * *
51590636 CCACTGCTACTTCAGGGAGATAAGATTTGTGGCTTCAATATGCT
1 -CACTGCAACTTCAAGGAGATAAGATTTATAGCTTCAATATGCT
* * **
51590680 CACTGCAACTTCAAGGAGATAAGATTCGCCATGGTAACTTCAATCCGTCT
1 CACTGCAACTTCAAGGAGATAAGATT-----T-ATAGCTTCAATATG-CT
** * * * *
51590730 TGCTGCAACTTC-AGGAGAATGAGATTTACTATCTTCGATTTATTCT
1 CACTGCAACTTCAAGGAG-ATAAGATTTA-TAGCTTC-A-ATATGCT
* * * * * *
51590776 -ACTCCAACTTCAGGGAGATAAGATCTGTAACTTCAATCTGCT
1 CACTGCAACTTCAAGGAGATAAGATTTATAGCTTCAATATGCT
* * * * * * *
51590818 CCACTGCAACTTCAGGGAGATAAGACTTGTGGCTTTAGTCTGCT
1 -CACTGCAACTTCAAGGAGATAAGATTTATAGCTTCAATATGCT
* * * *
51590862 CCACTGCAACTTCAGGGAGATTAGGCTTT-TAGCTTTAATATGCT
1 -CACTGCAACTTCAAGGAGA-TAAGATTTATAGCTTCAATATGCT
* * * *
51590906 CCATTGCAACTTTAGGGAGATAAGATTTGTAGCTT
1 -CACTGCAACTTCAAGGAGATAAGATTTATAGCTT
51590941 GTAGGTTTAG
Statistics
Matches: 273, Mismatches: 55, Indels: 43
0.74 0.15 0.12
Matches are distributed among these distances:
42 4 0.01
43 35 0.13
44 128 0.47
45 61 0.22
46 9 0.03
47 1 0.00
48 1 0.00
49 15 0.05
50 19 0.07
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (43 bp):
CACTGCAACTTCAAGGAGATAAGATTTATAGCTTCAATATGCT
Found at i:51590656 original size:89 final size:88
Alignment explanation
Indices: 51590540--51590940 Score: 251
Period size: 88 Copynumber: 4.5 Consensus size: 88
51590530 TATAGCTTTG
* *
51590540 ATCTGTTCCACTGCTACTTCAAGGAGATAATG-TTTATAGCTTTAATATGCTCTACTACAACTTC
1 ATCTGCTCCACTGCTACTTCAAGGAGATAA-GATTTATAGCTTCAATATGCTC-ACTACAACTTC
51590604 -AGAGAGATAAGATTTGCTATCTTCA
64 AAG-GAGATAAGATTTGCTATCTTCA
* * * *
51590629 ATCTGCTCCACTGCTACTTCAGGGAGATAAGATTTGTGGCTTCAATATGCTCACTGCAACTTCAA
1 ATCTGCTCCACTGCTACTTCAAGGAGATAAGATTTATAGCTTCAATATGCTCACTACAACTTCAA
* *
51590694 GGAGATAAGATTCGCCATGGTAACTTCA
66 GGAGATAAGATT-----TGCTATCTTCA
* ** * * * * * *
51590722 ATCCG-TCTTGCTGCAACTTC-AGGAGAATGAGATTTACTATCTTCGATTTATTCT-ACTCCAAC
1 ATCTGCTC-CACTGCTACTTCAAGGAG-ATAAGATTTA-TAGCTTC-A-ATATGCTCACTACAAC
* * *
51590784 TTCAGGGAGATAAGATCTG-TAACTTCA
61 TTCAAGGAGATAAGATTTGCTATCTTCA
* * * * * * * * *
51590811 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGGCTTTAGTCTGCTCCACTGCAACTTCA
1 ATCTGCTCCACTGCTACTTCAAGGAGATAAGATTTATAGCTTCAATATGCT-CACTACAACTTCA
* * * * *
51590876 GGGAGATTAGGCTTT--TAGCTTTA
65 AGGAGA-TAAGATTTGCTATCTTCA
* * * * * *
51590899 ATATGCTCCATTGCAACTTTAGGGAGATAAGATTTGTAGCTT
1 ATCTGCTCCACTGCTACTTCAAGGAGATAAGATTTATAGCTT
51590941 GTAGGTTTAG
Statistics
Matches: 249, Mismatches: 46, Indels: 35
0.75 0.14 0.11
Matches are distributed among these distances:
86 4 0.02
87 1 0.00
88 86 0.35
89 81 0.33
90 8 0.03
92 6 0.02
93 30 0.12
94 5 0.02
95 23 0.09
96 5 0.02
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (88 bp):
ATCTGCTCCACTGCTACTTCAAGGAGATAAGATTTATAGCTTCAATATGCTCACTACAACTTCAA
GGAGATAAGATTTGCTATCTTCA
Found at i:51590970 original size:95 final size:95
Alignment explanation
Indices: 51590780--51591027 Score: 246
Period size: 95 Copynumber: 2.7 Consensus size: 95
51590770 TATTCTACTC
** * * * *
51590780 CAACTTCAGGGAGATAAGA-TCTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGAT-A-A-
1 CAACTTCAGGGAGATAAGACT-TGTGCCTTTAATATGCTCCACTACAACTTTAGGGAGATAAGAT
*
51590841 --G-A-CTTGTGGCTTTAGTCTGCTCCACTG
65 TTGTAGCTTGTGGCTTTAGTCTACTCCACTG
* * * * *
51590868 CAACTTCAGGGAGATTAGGCTTTTAG-CTTTAATATGCTCCATTGCAACTTTAGGGAGATAAGAT
1 CAACTTCAGGGAGATAAGACTTGT-GCCTTTAATATGCTCCACTACAACTTTAGGGAGATAAGAT
*
51590932 TTGTAGCTTGTAGG-TTTAGTCTATTCCACTG
65 TTGTAGCTTGT-GGCTTTAGTCTACTCCACTG
* * * *
51590963 TAACTTCAGGGAGATAAGACTTGTGCCTTTAATCTGCTCTACTACAACTTTAGGGAGTTAAGATT
1 CAACTTCAGGGAGATAAGACTTGTGCCTTTAATATGCTCCACTACAACTTTAGGGAGATAAGATT
51591028 CGTCATGATG
Statistics
Matches: 130, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
88 48 0.37
89 2 0.02
90 1 0.01
93 1 0.01
94 2 0.02
95 74 0.57
96 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (95 bp):
CAACTTCAGGGAGATAAGACTTGTGCCTTTAATATGCTCCACTACAACTTTAGGGAGATAAGATT
TGTAGCTTGTGGCTTTAGTCTACTCCACTG
Found at i:51591018 original size:44 final size:43
Alignment explanation
Indices: 51590780--51591025 Score: 215
Period size: 44 Copynumber: 5.4 Consensus size: 43
51590770 TATTCTACTC
* *
51590780 CAACTTCAGGGAGATAAGA-TCTGTAACTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGACT-TGT-GCTTTAATCTGCTCCACTG
*
51590824 CAACTTCAGGGAGATAAGACTTGTGGCTTTAGTCTGCTCCACTG
1 CAACTTCAGGGAGATAAGACTTGT-GCTTTAATCTGCTCCACTG
* * * * *
51590868 CAACTTCAGGGAGATTAGGCTTTTAGCTTTAATATGCTCCATTG
1 CAACTTCAGGGAGATAAGACTTGT-GCTTTAATCTGCTCCACTG
* * **
51590912 CAACTTTAGGGAGATAAGATTTGTAGCTTGTAGGTTTAGTCTATTCCACTG
1 CAACTTCAGGGAGATAAGACTTGT-GCTT-TA-----A-TCTGCTCCACTG
* * *
51590963 TAACTTCAGGGAGATAAGACTTGTGCCTTTAATCTGCTCTACTA
1 CAACTTCAGGGAGATAAGACTTGTG-CTTTAATCTGCTCCACTG
* *
51591007 CAACTTTAGGGAGTTAAGA
1 CAACTTCAGGGAGATAAGA
51591026 TTCGTCATGA
Statistics
Matches: 163, Mismatches: 30, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
44 123 0.75
45 4 0.02
50 4 0.02
51 32 0.20
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (43 bp):
CAACTTCAGGGAGATAAGACTTGTGCTTTAATCTGCTCCACTG
Found at i:51597209 original size:15 final size:16
Alignment explanation
Indices: 51597189--51597220 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
51597179 GCGATCCTCT
51597189 CTTGAA-AAATTAAAA
1 CTTGAATAAATTAAAA
51597204 CTTGAATAAATTAAAA
1 CTTGAATAAATTAAAA
51597220 C
1 C
51597221 AAGTATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.56, C:0.09, G:0.06, T:0.28
Consensus pattern (16 bp):
CTTGAATAAATTAAAA
Found at i:51598016 original size:26 final size:25
Alignment explanation
Indices: 51597987--51598042 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 25
51597977 TATATAAGAA
51597987 ATAAGTGGAAAATAAAATAAATATAT
1 ATAAGTGGAAAAT-AAATAAATATAT
** **
51598013 ATAAAGTTTAAGGTAAATAAATATAT
1 AT-AAGTGGAAAATAAATAAATATAT
51598039 ATAA
1 ATAA
51598043 AAAACAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
25 2 0.08
26 16 0.64
27 7 0.28
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (25 bp):
ATAAGTGGAAAATAAATAAATATAT
Found at i:51598096 original size:3 final size:3
Alignment explanation
Indices: 51598082--51598145 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
51598072 AGAAATAGAG
* * * *
51598082 AAT AAT AA- AAT AAT AA- AAT AAAG AAT GAAC AAG AAT AAT AAT AAC
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT -AAT AAT AAT AAT AAT AAT
51598127 AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A
51598146 GTAAGGAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
2 4 0.08
3 42 0.84
4 4 0.08
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (3 bp):
AAT
Found at i:51605487 original size:3 final size:3
Alignment explanation
Indices: 51605479--51605522 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
51605469 AGGAAGGGTA
* * *
51605479 AAT AAT AAT AAT GAT AAT AAT AAT ACT AAT AAC AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
51605523 AAACAAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:51611893 original size:10 final size:10
Alignment explanation
Indices: 51611874--51611917 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
51611864 AATTTTAGCT
51611874 TTTATCTTTA
1 TTTATCTTTA
*
51611884 TTTATATTTA
1 TTTATCTTTA
*
51611894 TTTACCTTTA
1 TTTATCTTTA
*
51611904 ATTATCTTTA
1 TTTATCTTTA
51611914 TTTA
1 TTTA
51611918 ATTGTATTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:51611928 original size:20 final size:20
Alignment explanation
Indices: 51611880--51611928 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
51611870 AGCTTTTATC
*
51611880 TTTATTTATATTTATTTACC
1 TTTATTTATATTTATTTACA
* *
51611900 TTTAATTATCTTTATTTA-A
1 TTTATTTATATTTATTTACA
51611919 TTGTATTTAT
1 TT-TATTTAT
51611929 TTTTTAGAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTATTTATATTTATTTACA
Found at i:51613058 original size:25 final size:25
Alignment explanation
Indices: 51613030--51613077 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
51613020 AAAAAGGTAT
*
51613030 GACCGTTTTTTTGAAGAGAGGTTAC
1 GACCGTTTTGTTGAAGAGAGGTTAC
51613055 GACCGTTTTGTTGAAGAGAGGTT
1 GACCGTTTTGTTGAAGAGAGGTT
51613078 CTCTTTTGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.23, C:0.10, G:0.31, T:0.35
Consensus pattern (25 bp):
GACCGTTTTGTTGAAGAGAGGTTAC
Found at i:51613411 original size:24 final size:24
Alignment explanation
Indices: 51613383--51613435 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
51613373 GTTCTAGAAA
* * *
51613383 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATAAGCATAATAT
*
51613407 ATTTAGCATTTATAAGCATAATTT
1 ATTTAGCATTTATAAGCATAATAT
51613431 ATTTA
1 ATTTA
51613436 TGGTTTAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.51
Consensus pattern (24 bp):
ATTTAGCATTTATAAGCATAATAT
Found at i:51615806 original size:104 final size:104
Alignment explanation
Indices: 51615609--51615807 Score: 247
Period size: 104 Copynumber: 1.9 Consensus size: 104
51615599 TCCTAATTCC
* * * * * *
51615609 TAAATAGTGAGTTATACAGCCTACGCACACGCCAATGTCCTTACCTGTGTGGCTCAGACGGCCTG
1 TAAATAGTGAGTTACACAACCTACGCACACACCAATGTCCTTACCCGTGTGGCTCACACAGCCTG
* * * *
51615674 GGCACACGCTCATGTCCTTGGCCGTGTGGTTCTAAAGCG
66 GGCACACGCCCATGTCCCTAGCCATGTGGTTCTAAAGCG
* * *
51615713 TAAATAGTGAGTTACACAACCTA-GACACACACCCATGTCTTTACCCGTGTGGCTCACATAGCCT
1 TAAATAGTGAGTTACACAACCTACG-CACACACCAATGTCCTTACCCGTGTGGCTCACACAGCCT
* *
51615777 GGGCACATGCCCATGTCCCTAGCTATGTGGT
65 GGGCACACGCCCATGTCCCTAGCCATGTGGT
51615808 GTCGACAATC
Statistics
Matches: 79, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
103 1 0.01
104 78 0.99
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (104 bp):
TAAATAGTGAGTTACACAACCTACGCACACACCAATGTCCTTACCCGTGTGGCTCACACAGCCTG
GGCACACGCCCATGTCCCTAGCCATGTGGTTCTAAAGCG
Found at i:51619978 original size:25 final size:25
Alignment explanation
Indices: 51619924--51619980 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
51619914 GGATACTTCG
* *
51619924 CAGCTCGTCAGAGCATACCGATTTA
1 CAGCTCGTCAGAGCATACCAATCTA
* * *
51619949 TAGCTCGTGAGAGCATACTAATCTA
1 CAGCTCGTCAGAGCATACCAATCTA
51619974 CAGCTCG
1 CAGCTCG
51619981 AGTGAGCACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (25 bp):
CAGCTCGTCAGAGCATACCAATCTA
Found at i:51623018 original size:25 final size:25
Alignment explanation
Indices: 51622990--51623118 Score: 89
Period size: 25 Copynumber: 5.4 Consensus size: 25
51622980 CGATACTCAA
51622990 CTCGTATGAGCTTCCAGTTATACAG
1 CTCGTATGAGCTTCCAGTTATACAG
* *
51623015 CTCGCATGAG----CA--TACT-CAA
1 CTCGTATGAGCTTCCAGTTA-TACAG
*
51623034 CTCGTATGAGCTTCCCGTTATACAG
1 CTCGTATGAGCTTCCAGTTATACAG
* * *
51623059 CTCGCATGAGCTTCCCA-TTATTCAA
1 CTCGTATGAGCTT-CCAGTTATACAG
* *
51623084 CTCGAAGGAGCTTACC-GTT-TACAG
1 CTCGTATGAGCTT-CCAGTTATACAG
51623108 CTCGTATGAGC
1 CTCGTATGAGC
51623119 ATACATGAAT
Statistics
Matches: 78, Mismatches: 16, Indels: 21
0.68 0.14 0.18
Matches are distributed among these distances:
19 13 0.17
20 1 0.01
21 2 0.03
23 1 0.01
24 13 0.17
25 46 0.59
26 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (25 bp):
CTCGTATGAGCTTCCAGTTATACAG
Found at i:51623045 original size:44 final size:44
Alignment explanation
Indices: 51622982--51623069 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
51622972 GAGCTTTTCG
51622982 ATACTCAACTCGTATGAGCTTCCAGTTATACAGCTCGCATGAGC
1 ATACTCAACTCGTATGAGCTTCCAGTTATACAGCTCGCATGAGC
*
51623026 ATACTCAACTCGTATGAGCTTCCCGTTATACAGCTCGCATGAGC
1 ATACTCAACTCGTATGAGCTTCCAGTTATACAGCTCGCATGAGC
51623070 TTCCCATTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (44 bp):
ATACTCAACTCGTATGAGCTTCCAGTTATACAGCTCGCATGAGC
Found at i:51626560 original size:36 final size:36
Alignment explanation
Indices: 51626520--51626589 Score: 115
Period size: 36 Copynumber: 1.9 Consensus size: 36
51626510 ATTTATTAGC
51626520 ATAAAAATCTTTGCT-ATTTCTTTTCATATTTAGGGT
1 ATAAAAATCTTTG-TAATTTCTTTTCATATTTAGGGT
*
51626556 ATAAAAATCTTTGTAATTTTTTTTCATATTTAGG
1 ATAAAAATCTTTGTAATTTCTTTTCATATTTAGG
51626590 AGTTTTTTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 1 0.03
36 31 0.97
ACGTcount: A:0.30, C:0.09, G:0.10, T:0.51
Consensus pattern (36 bp):
ATAAAAATCTTTGTAATTTCTTTTCATATTTAGGGT
Found at i:51629458 original size:23 final size:23
Alignment explanation
Indices: 51629421--51629493 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
51629411 ACTTACCTTT
* *
51629421 GCTCATATGAACTTACCGTTTTA
1 GCTCATAAGAGCTTACCGTTTTA
** *
51629444 GCTCATTGGAGCTTACCGATTTA
1 GCTCATAAGAGCTTACCGTTTTA
* *
51629467 GCTCGTAAGAGCTTACCGTTTCA
1 GCTCATAAGAGCTTACCGTTTTA
51629490 GCTC
1 GCTC
51629494 TACGAAGCTT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (23 bp):
GCTCATAAGAGCTTACCGTTTTA
Found at i:51629502 original size:23 final size:22
Alignment explanation
Indices: 51629432--51629532 Score: 82
Period size: 23 Copynumber: 4.5 Consensus size: 22
51629422 CTCATATGAA
* **
51629432 CTTACCGTTTTAGCTCATTGGAG
1 CTTACCGTTTCAGCTC-TACGAG
*
51629455 CTTACCGATTT-AGCTCGTAAGAG
1 CTTACCG-TTTCAGCTC-TACGAG
51629478 CTTACCGTTTCAGCTCTACGAAG
1 CTTACCGTTTCAGCTCTACG-AG
*
51629501 CTTA-C-TATTCAGCTCTTCGGAG
1 CTTACCGT-TTCAGCTCTAC-GAG
51629523 CTTACCGTTT
1 CTTACCGTTT
51629533 ATCAACTCAG
Statistics
Matches: 66, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
21 1 0.02
22 23 0.35
23 38 0.58
24 4 0.06
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.36
Consensus pattern (22 bp):
CTTACCGTTTCAGCTCTACGAG
Found at i:51629514 original size:22 final size:22
Alignment explanation
Indices: 51629486--51629527 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
51629476 AGCTTACCGT
51629486 TTCAGCTCTACGAAGCTTACTA
1 TTCAGCTCTACGAAGCTTACTA
* *
51629508 TTCAGCTCTTCGGAGCTTAC
1 TTCAGCTCTACGAAGCTTAC
51629528 CGTTTATCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (22 bp):
TTCAGCTCTACGAAGCTTACTA
Found at i:51629721 original size:9 final size:9
Alignment explanation
Indices: 51629709--51629754 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
51629699 TAAGAGCTAT
*
51629709 ATGATTTAC
1 ATGAATTAC
51629718 ATGAATT--
1 ATGAATTAC
51629725 AT-AAGTTAC
1 ATGAA-TTAC
51629734 ATGAATTAC
1 ATGAATTAC
51629743 ATGAATTAC
1 ATGAATTAC
51629752 ATG
1 ATG
51629755 GATTTTATGA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
6 2 0.06
7 4 0.12
9 24 0.75
10 2 0.06
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.37
Consensus pattern (9 bp):
ATGAATTAC
Found at i:51634174 original size:40 final size:39
Alignment explanation
Indices: 51634109--51634194 Score: 118
Period size: 40 Copynumber: 2.2 Consensus size: 39
51634099 TTTGTATATA
**
51634109 TAGCCGAAGCTATCTCAAATTGCACACCAAGTGCCACTTT
1 TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCA-TTT
* * *
51634149 TAGCCGAAGCTATTTCGAACCGCACACTAAGTGCCATTT
1 TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCATTT
51634188 TAGCCGA
1 TAGCCGA
51634195 TAAGTCGTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 10 0.24
40 31 0.76
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCATTT
Found at i:51640030 original size:16 final size:15
Alignment explanation
Indices: 51640006--51640043 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
51639996 ATTATTGACT
51640006 AATTTGAAT-TGATTG
1 AATTTGAATATG-TTG
51640021 AATATTGAATATGTTG
1 AAT-TTGAATATGTTG
51640037 AATTTGA
1 AATTTGA
51640044 TAATTAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 7 0.33
16 12 0.57
17 2 0.10
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (15 bp):
AATTTGAATATGTTG
Found at i:51640393 original size:23 final size:24
Alignment explanation
Indices: 51640367--51640433 Score: 86
Period size: 22 Copynumber: 2.8 Consensus size: 24
51640357 TTACTCATAT
51640367 GAGCTTACCGTTTCAGCTCATT-G
1 GAGCTTACCGTTTCAGCTCATTCG
*
51640390 GAGCTTACCATTT-AGCTC-TTCG
1 GAGCTTACCGTTTCAGCTCATTCG
51640412 GAGCTTACCGTTTATCAGCTCA
1 GAGCTTACCG-TT-TCAGCTCA
51640434 GGAGGAGCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
21 2 0.05
22 15 0.41
23 14 0.38
24 1 0.03
25 5 0.14
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.34
Consensus pattern (24 bp):
GAGCTTACCGTTTCAGCTCATTCG
Found at i:51644775 original size:16 final size:16
Alignment explanation
Indices: 51644756--51644787 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
51644746 TATTTAAGAG
51644756 TTTTTTTCTTATTATA
1 TTTTTTTCTTATTATA
51644772 TTTTTTTCTTATTATA
1 TTTTTTTCTTATTATA
51644788 AATACCCCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTTTTTCTTATTATA
Found at i:51647640 original size:17 final size:17
Alignment explanation
Indices: 51647593--51647640 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
51647583 ATAAACATTA
51647593 AAATATTTAA-ATTTATT
1 AAATATTTAATA-TTATT
*
51647610 ATATATTT-ATATTATT
1 AAATATTTAATATTATT
51647626 AAATATTTAATATTA
1 AAATATTTAATATTA
51647641 CAAGTTAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 13 0.48
17 14 0.52
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
AAATATTTAATATTATT
Found at i:51649066 original size:3 final size:3
Alignment explanation
Indices: 51649058--51649086 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
51649048 ATTTTTAAGT
51649058 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
51649087 GTAGTGTGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:51650530 original size:23 final size:21
Alignment explanation
Indices: 51650504--51650569 Score: 55
Period size: 21 Copynumber: 3.0 Consensus size: 21
51650494 TTTTAGATTA
51650504 TTATATATA-TTATTTATTATACT
1 TTAT-TATACTTATTTATT-TA-T
*
51650527 TTATTTTACTTATTTATTTAT
1 TTATTATACTTATTTATTTAT
* *
51650548 TTATTTTATTGTATTT-TTTAT
1 TTATTATACT-TATTTATTTAT
51650569 T
1 T
51650570 ATTGGTTTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
21 16 0.41
22 10 0.26
23 13 0.33
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.70
Consensus pattern (21 bp):
TTATTATACTTATTTATTTAT
Found at i:51650556 original size:17 final size:17
Alignment explanation
Indices: 51650536--51650569 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
51650526 TTTATTTTAC
51650536 TTATT-TATTTATTTATT
1 TTATTGTATTT-TTTATT
51650553 TTATTGTATTTTTTATT
1 TTATTGTATTTTTTATT
51650570 ATTGGTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
TTATTGTATTTTTTATT
Found at i:51650589 original size:4 final size:4
Alignment explanation
Indices: 51650513--51650569 Score: 53
Period size: 4 Copynumber: 13.2 Consensus size: 4
51650503 ATTATATATA
*
51650513 TTAT TTAT TATACT TTATT TTAC TTAT TTAT TTAT TTATT TTAT TGTAT
1 TTAT TTAT T-TA-T TTA-T TTAT TTAT TTAT TTAT TTA-T TTAT T-TAT
51650562 TT-T TTAT T
1 TTAT TTAT T
51650570 ATTGGTTTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
3 3 0.07
4 24 0.53
5 16 0.36
6 2 0.04
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.72
Consensus pattern (4 bp):
TTAT
Found at i:51652933 original size:35 final size:34
Alignment explanation
Indices: 51652894--51653002 Score: 78
Period size: 35 Copynumber: 3.1 Consensus size: 34
51652884 TTTCGAGGGG
51652894 CTAGCACTTTTGAGCATTGATGTGTTTTGGTTGGA
1 CTAGC-CTTTTGAGCATTGATGTGTTTTGGTTGGA
* * * **
51652929 CTAGCTCTTATGAGAAAT-AGTGTGTTTTGGAAGGA
1 CTAGC-CTTTTGAGCATTGA-TGTGTTTTGGTTGGA
* * *
51652964 TTAG-CTTGTGTAAGCATCTGGTGTGTTTTGGTTGGA
1 CTAGCCTT-T-TGAGCAT-TGATGTGTTTTGGTTGGA
51653000 CTA
1 CTA
51653003 ACGATGTACT
Statistics
Matches: 54, Mismatches: 15, Indels: 9
0.69 0.19 0.12
Matches are distributed among these distances:
33 3 0.06
34 1 0.02
35 34 0.63
36 16 0.30
ACGTcount: A:0.20, C:0.10, G:0.29, T:0.40
Consensus pattern (34 bp):
CTAGCCTTTTGAGCATTGATGTGTTTTGGTTGGA
Found at i:51654518 original size:23 final size:23
Alignment explanation
Indices: 51654492--51654545 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
51654482 GTAGTTCCTG
*
51654492 ACTCATTTAAATGGTGTGGGATT
1 ACTCATTTAAACGGTGTGGGATT
*
51654515 ACTCGTTTAAACGGTGTGGGATT
1 ACTCATTTAAACGGTGTGGGATT
51654538 ACTCATTT
1 ACTCATTT
51654546 TTGAAACTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39
Consensus pattern (23 bp):
ACTCATTTAAACGGTGTGGGATT
Found at i:51655988 original size:23 final size:22
Alignment explanation
Indices: 51655962--51656030 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
51655952 TATATAATGC
51655962 AATAACAATGAAGACAAAAATAA
1 AATAACAATGAA-ACAAAAATAA
** *
51655985 AATAAGGATGAAACAATAAT--
1 AATAACAATGAAACAAAAATAA
* *
51656005 AATAA-AATAAAATAAAAATAA
1 AATAACAATGAAACAAAAATAA
51656026 CAATA
1 -AATA
51656031 CATTAATAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
19 10 0.28
20 5 0.14
22 11 0.31
23 10 0.28
ACGTcount: A:0.70, C:0.06, G:0.07, T:0.17
Consensus pattern (22 bp):
AATAACAATGAAACAAAAATAA
Found at i:51656007 original size:3 final size:3
Alignment explanation
Indices: 51655999--51656077 Score: 74
Period size: 3 Copynumber: 26.0 Consensus size: 3
51655989 AGGATGAAAC
* *
51655999 AAT AAT AAT AA- AAT AA- AAT AAA AAT AAC AAT ACATT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT
*
51656044 AAT AAT AAT AAT GAT AAT ACA- AATT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AA-T AAT AAT AAT
51656078 GATGATGTAA
Statistics
Matches: 63, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
2 5 0.08
3 51 0.81
4 5 0.08
5 2 0.03
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:51656095 original size:28 final size:28
Alignment explanation
Indices: 51656040--51656095 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
51656030 ACATTAATAA
*
51656040 TAATAATAATAATAATGATAATACAAAT
1 TAATAATAATAATAATGATAATAAAAAT
* *
51656068 TAATAATAATGATGATG-TAAGTAAAAAT
1 TAATAATAATAATAATGATAA-TAAAAAT
51656096 ATAAGTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 3 0.12
28 21 0.88
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32
Consensus pattern (28 bp):
TAATAATAATAATAATGATAATAAAAAT
Found at i:51656216 original size:3 final size:3
Alignment explanation
Indices: 51656208--51656349 Score: 55
Period size: 3 Copynumber: 46.7 Consensus size: 3
51656198 GATAGAAAAG
* * *
51656208 ATA ATA ATA ACGTA TTA ATA AGA ATA ATA ATA AT- ATA ATA ATT ATGGA
1 ATA ATA ATA A--TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT--A
* * * *
51656256 A-A A-A ATA ATA TTA AT- ATT TTAA ATA A-G ATA ATA ATA ATA GATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA -ATA
* * * *
51656299 GA-A AGTA GTA GTA GTA ATA ATA ATA ATA ATA A-A GATA ATA ATA AAA
1 -ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
51656345 ATA AT
1 ATA AT
51656350 TAATTTGAAA
Statistics
Matches: 108, Mismatches: 17, Indels: 28
0.71 0.11 0.18
Matches are distributed among these distances:
2 11 0.10
3 86 0.80
4 8 0.07
5 3 0.03
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:51656249 original size:23 final size:22
Alignment explanation
Indices: 51656152--51656249 Score: 65
Period size: 23 Copynumber: 4.3 Consensus size: 22
51656142 TTAATTAGCC
* *
51656152 TAATAATATGATAATAATATTA
1 TAATAATAAGATAATAATAATA
* *
51656174 GTAACAATACAG-TAATAGTAATA
1 -TAATAATA-AGATAATAATAATA
* **
51656197 -AGATAGAAAAGATAATAATAACG
1 TA-ATA-ATAAGATAATAATAATA
*
51656220 TATTAATAAGAATAATAATAATA
1 TAATAATAAG-ATAATAATAATA
51656243 TAATAAT
1 TAATAAT
51656250 TATGGAAAAA
Statistics
Matches: 55, Mismatches: 14, Indels: 12
0.68 0.17 0.15
Matches are distributed among these distances:
21 1 0.02
22 8 0.15
23 44 0.80
24 2 0.04
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.31
Consensus pattern (22 bp):
TAATAATAAGATAATAATAATA
Found at i:51658239 original size:45 final size:45
Alignment explanation
Indices: 51658000--51658401 Score: 218
Period size: 45 Copynumber: 9.0 Consensus size: 45
51657990 GTCGTTTAAA
* * * * * *
51658000 TCTGCTCCACTACAACTTCAAGGAGATAGGATTAGTTGTCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAG
* * * *
51658045 TCTAC-CTCGCTGCAACTTCAGGGAGATAAGACTT-G-TAAT-TTTAA
1 TCTGCTC-CACTGCAACTTCAGGGAGATAAGA-TTCGCT-ATCTTCAG
* * * * * *
51658089 CCTGCTCCACTGCAATTTCAAGGAGATAAGGTTTGCTA---TGA-
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAG
* * * * * *
51658130 TTTGCTCTATTGCAACTTCAGCGAGATAAGA-TCTGTAATTTATAGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTC-G----CTAT--CTTCAG
* * * *
51658181 TTTGTTCCACTGCAACTTCAGGAAAATAAGATTCGCTATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAG
* * * *
51658226 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGTTATTTTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAG
* * *
51658271 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTT-G-TAACTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGCTATCTTCAG
* * * ** **
51658315 CCTGCTCCACTGTAATTTCAGGGAGATAAGATT-AATGGCTTC-G
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAG
* * *
51658358 ATCTACTCCACTGCAACTTCAGGGAGATAAGATTCACCATCTTC
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTC
51658402 GATCTATTCC
Statistics
Matches: 271, Mismatches: 64, Indels: 44
0.72 0.17 0.12
Matches are distributed among these distances:
40 1 0.00
41 24 0.09
42 2 0.01
43 4 0.01
44 96 0.35
45 108 0.40
46 3 0.01
47 3 0.01
50 2 0.01
51 26 0.10
52 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAG
Found at i:51658254 original size:96 final size:90
Alignment explanation
Indices: 51658054--51658346 Score: 228
Period size: 96 Copynumber: 3.3 Consensus size: 90
51658044 GTCTACCTCG
* ** * *
51658054 CTGCAACTTCAGGGAGATAAGA-CTTGTAATTT-TAACCTGCTCCACTGCAATTTCAAGGAGATA
1 CTGCAACTTCAGGGAGATAAGATCTCGTAATTTATAGTCTGCTCCACTGCAACTTCAAGGAAATA
* * * ** *
51658117 AG-GTT-T-GCTAT-GATTTGCTCTA
66 AGACTTGTAACT-TCAACCTGCTCCA
* * *
51658139 TTGCAACTTCAGCGAGATAAGATCT-GTAATTTATAGCTTCAATTTGTTCCACTGCAACTTC-AG
1 CTGCAACTTCAGGGAGATAAGATCTCGTAATTTATAG--TC----TGCTCCACTGCAACTTCAAG
* **
51658202 GAAAATAAGA-TTCGCTATCTTCAGTCTGCTCCA
60 G-AAATAAGACTT-G-TAACTTCAACCTGCTCCA
* * *
51658235 CTGCAACTTCAGGGAGATAAGA-CTCGTTATTTTTAGTCTGCTCCACTGCAACTTCAAGGAGATA
1 CTGCAACTTCAGGGAGATAAGATCTCGTAATTTATAGTCTGCTCCACTGCAACTTCAAGGAAATA
51658299 AGACTTGTAACTTCAACCTGCTCCA
66 AGACTTGTAACTTCAACCTGCTCCA
* *
51658324 CTGTAATTTCAGGGAGATAAGAT
1 CTGCAACTTCAGGGAGATAAGAT
51658347 TAATGGCTTC
Statistics
Matches: 166, Mismatches: 23, Indels: 33
0.75 0.10 0.15
Matches are distributed among these distances:
85 27 0.16
86 4 0.02
88 1 0.01
89 35 0.21
90 24 0.14
91 8 0.05
92 23 0.14
94 2 0.01
95 4 0.02
96 38 0.23
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (90 bp):
CTGCAACTTCAGGGAGATAAGATCTCGTAATTTATAGTCTGCTCCACTGCAACTTCAAGGAAATA
AGACTTGTAACTTCAACCTGCTCCA
Found at i:51658433 original size:45 final size:45
Alignment explanation
Indices: 51658186--51658446 Score: 115
Period size: 45 Copynumber: 5.8 Consensus size: 45
51658176 TTCAATTTGT
* * * * *
51658186 TCCACTGCAACTTCAGGAAAATAAGATTCGCTATCTTC-AGTCTGC
1 TCCACTACAACTTCAGGGAAATAAGATTCACAATCTTCGA-TCTAC
* * * *** ** *
51658231 TCCACTGCAACTTCAGGGAGATAAGACTCGTTAT-TTTTAGTCTGC
1 TCCACTACAACTTCAGGGAAATAAGATTCACAATCTTCGA-TCTAC
* * * ** * * *
51658276 TCCACTGCAACTTCAAGGAGATAAGACTT-GTAA-CTTCAACCTGC
1 TCCACTACAACTTCAGGGAAATAAGA-TTCACAATCTTCGATCTAC
** * *
51658320 TCCACTGTAATTTCAGGGAGATAAGATT---AATGGCTTCGATCTAC
1 TCCACTACAACTTCAGGGAAATAAGATTCACAAT--CTTCGATCTAC
* * * *
51658364 TCCACTGCAACTTCAGGGAGATAAGATTCACCATCTTCGATCTAT
1 TCCACTACAACTTCAGGGAAATAAGATTCACAATCTTCGATCTAC
* * *
51658409 TCCACTACTA-TCTCGGGGAAATAAGATTTACAATCTTC
1 TCCACTACAACT-TCAGGGAAATAAGATTCACAATCTTC
51658447 AGTCTGTTTC
Statistics
Matches: 179, Mismatches: 27, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.01
43 2 0.01
44 64 0.36
45 108 0.60
46 1 0.01
47 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (45 bp):
TCCACTACAACTTCAGGGAAATAAGATTCACAATCTTCGATCTAC
Found at i:51658478 original size:178 final size:178
Alignment explanation
Indices: 51658294--51658968 Score: 408
Period size: 177 Copynumber: 3.8 Consensus size: 178
51658284 AACTTCAAGG
** * * * * *
51658294 AGATAAGACTTGTAA-CTTCAACCTGCTCCACT-GTAATTTCAGGGAGAT-AAGATTAATGGCTT
1 AGATAAGACTTACAATCTTCAACCTACTCCACTACTAACTT-AGGGAGATAAAG-CTAATGGCTA
** * * *
51658356 CGATCTACTCCACTGCAACTTCAGGG-AGATAAGATTCACCATCTTCGATCTATTCCACTACTAT
64 AAATCTACTCCACTGCAACCTC-GGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACT-G
* * * *
51658420 CTCGGGGAAATAAGATTTACAATCTTCAGTCTGTTTCCTTGCTACATCAGGA
127 CTCAGGGAAAGAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACATCAGGA
* ** * **
51658472 AGATAAGAC-TACAATCTTCGACCTACTCCTTTACTACCTTAGGGAGATAAAGCTGGTGGCTAAA
1 AGATAAGACTTACAATCTTCAACCTACTCCACTACTAACTTAGGGAGATAAAGCTAATGGCTAAA
* * * ** * * *
51658536 ATCTACTCCCCTGCTACCTCGGGAAGATAAGCTTTGCCGTTTTCGATCTACTCCACTACTGCTTA
66 ATCTACTCCACTGCAACCTCGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTCA
*
51658601 GGGAGAGAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACATCAGGA
131 GGGAAAGAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACATCAGGA
* * * * * * * * * *
51658649 AGATAAGAC-TACAATTTTCAGCTTGCTCTC-TTACTACCTCAAGGAGATAAGGCTAGTGGCTAA
1 AGATAAGACTTACAATCTTCAACCTACTC-CACTACTAACTTAGGGAGATAAAGCTAATGGCTAA
* ** * * * * * * * * * * * *
51658712 AATCTGCTCGTCTGCTACCTCAGAAAGATAGGAGTCGCCATTTTCGATTTGCCCCACTGCTATCT
65 AATCTACTCCACTGCAACCTCGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACT-GCT
* * * * * * *
51658777 C-GAGGAGACAAGATCTACAATCTTCAGTCTACTCCCTCGCTACCTCAGAA
129 CAG-GGAAAGAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACATCAGGA
* * * * * * * * * *
51658827 AGACAAGAC-TACAATCTTCAGCCTGCTGCC-TTGCT-GCTTAGGGAGACAAGGCTAGTGGCTGA
1 AGATAAGACTTACAATCTTCAACCTACT-CCACTACTAACTTAGGGAGATAAAGCTAATGGCTAA
* * ** * *
51658889 AATCTGCTCC-CT-TATTACCTCAGGG-AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
65 AATCTACTCCACTGCA--ACCTC-GGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTG
* *
51658951 C-CTAGGGAGATAAGATCT
127 CTC-AGGGAAAGAAGATCT
51658969 GTAATCTTTA
Statistics
Matches: 398, Mismatches: 86, Indels: 28
0.78 0.17 0.05
Matches are distributed among these distances:
175 1 0.00
176 15 0.04
177 217 0.55
178 157 0.39
179 8 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (178 bp):
AGATAAGACTTACAATCTTCAACCTACTCCACTACTAACTTAGGGAGATAAAGCTAATGGCTAAA
ATCTACTCCACTGCAACCTCGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTCA
GGGAAAGAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACATCAGGA
Found at i:51658659 original size:177 final size:177
Alignment explanation
Indices: 51658399--51658968 Score: 603
Period size: 177 Copynumber: 3.2 Consensus size: 177
51658389 ATTCACCATC
* * ** * * *
51658399 TTCGATCTATTCCACTACTATCTCGGGGAAATAAGATTTACAATCTTCAGTCTGTTTCCTTGCTA
1 TTCGATCTACTCCACTACT-GCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTGCTA
* * *
51658464 CATCAGGAAGATAAGACTACAATCTTC-GACCTACTCCTTTACTACCTTAGGGAGATAAAGCTGG
65 CATCAGGAAGATAAGACTACAATCTTCAG-CCTGCTCCTTTACTACCTTAGGGAGATAAGGCTAG
* *
51658528 TGGCTAAAATCTACTCCCCTGCTACCTCGGGAAGATAAGCTTTGCCGTT
129 TGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTTGCCGTT
*
51658577 TTCGATCTACTCCACTACTGCTTAGGGAGAGAAGATCTACAATCTTCAGTCTGCTTCCTTGCTAC
1 TTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTGCTAC
* * * *
51658642 ATCAGGAAGATAAGACTACAATTTTCAGCTTGCT-CTCTTACTACCTCAAGGAGATAAGGCTAGT
66 ATCAGGAAGATAAGACTACAATCTTCAGCCTGCTCCT-TTACTACCTTAGGGAGATAAGGCTAGT
** * * * * * *
51658706 GGCTAAAATCTGCTCGTCTGCTACCTCAGAAAGATAGGAGTCGCCATT
130 GGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTTGCCGTT
* * * * * * * * * *
51658754 TTCGATTTGCCCCACTGCT-ATCTCGAGGAGACAAGATCTACAATCTTCAGTCTACTCCCTCGCT
1 TTCGATCTACTCCACTACTGCT-TAG-GGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTGCT
* * * * * *
51658818 ACCTCAGAAAGACAAGACTACAATCTTCAGCCTGCTGCC-TTGCT-GCTTAGGGAGACAAGGCTA
64 ACATCAGGAAGATAAGACTACAATCTTCAGCCTGCT-CCTTTACTACCTTAGGGAGATAAGGCTA
* * ** *
51658881 GTGGCTGAAATCTGCTCCCTTATTACCTCAGGG-AGATAAGATTTGCCGTC
128 GTGGCTAAAATCTGCTCCCCTGCTACCTC-GGGAAGATAAGATTTGCCGTT
* *
51658931 TTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCT
1 TTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCT
51658969 GTAATCTTTA
Statistics
Matches: 319, Mismatches: 65, Indels: 18
0.79 0.16 0.04
Matches are distributed among these distances:
176 15 0.05
177 214 0.67
178 89 0.28
180 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (177 bp):
TTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTGCTAC
ATCAGGAAGATAAGACTACAATCTTCAGCCTGCTCCTTTACTACCTTAGGGAGATAAGGCTAGTG
GCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTTGCCGTT
Found at i:51658697 original size:44 final size:44
Alignment explanation
Indices: 51658602--51658699 Score: 103
Period size: 44 Copynumber: 2.2 Consensus size: 44
51658592 TACTGCTTAG
* *
51658602 GGAGAGAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACATCA
1 GGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTACTACATCA
* *
51658646 GGAAGATAAGA-CTACAATTTTCAG-CTTGC-TCTCTTACTACCTCAA
1 GG-AGATAAGATCTACAATCTTCAGTC-TGCTTC-CTTACTACATC-A
51658691 GGAGATAAG
1 GGAGATAAG
51658700 GCTAGTGGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
43 3 0.07
44 33 0.72
45 10 0.22
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (44 bp):
GGAGATAAGATCTACAATCTTCAGTCTGCTTCCTTACTACATCA
Found at i:51658958 original size:44 final size:44
Alignment explanation
Indices: 51658910--51659335 Score: 309
Period size: 44 Copynumber: 9.8 Consensus size: 44
51658900 TTATTACCTC
* * * *
51658910 AGGGAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCCT
1 AGGGAGATAAGATCTGCAGTCTTCAATCTGCTCCACTACTGCTT
* * * * *
51658954 AGGGAGATAAGATCTGTAATCTT-TAGCTTACTCCACTACTGCTT
1 AGGGAGATAAGATCTGCAGTCTTCAATC-TGCTCCACTACTGCTT
* * ** * *
51658998 AGAGAGAT-AGA-ATGGTGGCTTAAATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGCAGTCTTCAATCTGCTCCACTACTGCTT
* * * *
51659040 AGGGAGACAAGAT-TCGCTGTCTTCGATCTGCTTCACTACTGCTT
1 AGGGAGATAAGATCT-GCAGTCTTCAATCTGCTCCACTACTGCTT
* * ** *
51659084 AGGGAGATAAGATCTGTAATCTTCAGCCTACTCCACTACTGCTT
1 AGGGAGATAAGATCTGCAGTCTTCAATCTGCTCCACTACTGCTT
* * *
51659128 AGAGAGATAAGATGGTG--G-CTTAAATCTGCTCCACTACTGCTT
1 AGGGAGATAAGAT-CTGCAGTCTTCAATCTGCTCCACTACTGCTT
* * *
51659170 AGGGAGACAAG--CTTCACCGTCTTCGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGCA--GTCTTCAATCTGCTCCACTACTGCTT
* * ** *
51659214 AGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCACTACTGCTC
1 AGGGAGATAAGATCTGCAGTCTTCAATCTGCTCCACTACTGCTT
* * ** * * *
51659258 AGGGAGACAAG-GCTGGTGGCTTAAATCTGCTCCACTACTACTT
1 AGGGAGATAAGATCTGCAGTCTTCAATCTGCTCCACTACTGCTT
* *
51659301 AGGGAGACAAGAT-TAGCCA-TCTTCTATCTGCTCCA
1 AGGGAGATAAGATCT-G-CAGTCTTCAATCTGCTCCA
51659336 TTGCTACCTC
Statistics
Matches: 294, Mismatches: 71, Indels: 34
0.74 0.18 0.09
Matches are distributed among these distances:
39 1 0.00
42 55 0.19
43 46 0.16
44 186 0.63
45 3 0.01
46 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (44 bp):
AGGGAGATAAGATCTGCAGTCTTCAATCTGCTCCACTACTGCTT
Found at i:51659063 original size:130 final size:130
Alignment explanation
Indices: 51658910--51659362 Score: 656
Period size: 130 Copynumber: 3.5 Consensus size: 130
51658900 TTATTACCTC
* *
51658910 AGGGAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
1 AGGGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
* *
51658975 TTTAGCTTACTCCACTACTGCTTAGAGAGATAGAATGGTGGCTTAAATCTGCTCCACTACTGCTT
66 TTCAGCCTACTCCACTACTGCTTAGAGAGATAGAATGGTGGCTTAAATCTGCTCCACTACTGCTT
* * *
51659040 AGGGAGACAAGATTCGCTGTCTTCGATCTGCTTCACTACTGCTTAGGGAGATAAGATCTGTAATC
1 AGGGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
51659105 TTCAGCCTACTCCACTACTGCTTAGAGAGATA-AGATGGTGGCTTAAATCTGCTCCACTACTGCT
66 TTCAGCCTACTCCACTACTGCTTAGAGAGATAGA-ATGGTGGCTTAAATCTGCTCCACTACTGCT
51659169 T
130 T
* * *
51659170 AGGGAGACAAGCTTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
1 AGGGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
* * * * ** *
51659235 TTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTGGTGGCTTAAATCTGCTCCACTACTACT
66 TTCAGCCTACTCCACTACTGCTTAGAGAGA-TAGAATGGTGGCTTAAATCTGCTCCACTACTGCT
51659300 T
130 T
* * * * * * *
51659301 AGGGAGACAAGATTAGCCATCTTCTATCTGCTCCATTGCTACCTCATGGAGATAAGATCTGT
1 AGGGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCCT-AGGGAGATAAGATCTGT
51659363 GAATTTACCG
Statistics
Matches: 291, Mismatches: 28, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
129 1 0.00
130 209 0.72
131 65 0.22
132 16 0.05
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (130 bp):
AGGGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
TTCAGCCTACTCCACTACTGCTTAGAGAGATAGAATGGTGGCTTAAATCTGCTCCACTACTGCTT
Found at i:51659080 original size:86 final size:86
Alignment explanation
Indices: 51658935--51659335 Score: 294
Period size: 86 Copynumber: 4.6 Consensus size: 86
51658925 GCCGTCTTCG
* * * * *
51658935 ATCTGCTCCACTACTGCCTAGGGAGATAAGATCTG-TAATCTTTAGCTTACTCCACTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATC-GCT-ATCTTCATC-TGCTCCACTACTGCTTA
* *
51658999 GAGAGA-TAGAAT-GGTGGCTTAA
63 GGGAGACAAGAATCGGTGGCTTAA
* *
51659021 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCTGTCTTCGATCTGCTTCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGA-TCGCTATCTTC-ATCTGCTCCACTACTGCTTAG
* * ** *
51659086 GGAGATAAG-ATCTGTAATCTTCA
64 GGAGACAAGAATCGGT-GGCTTAA
** * * * * ** *
51659109 GCCTACTCCACTACTGCTTAGAGAGATAAGAT-GGTGGCTTAAATCTGCTCCACTACTGCTTAGG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCGCTATCTT-CATCTGCTCCACTACTGCTTAGG
** *** * **
51659173 GAGACAAGCTTCACCGTCTTCG
65 GAGACAAGAATCGGTGGCTTAA
* * *
51659195 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG-TAATCTTCAGCCTGCTCCACTACTGCTCA
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATC-GCT-ATCTTCA-TCTGCTCCACTACTGCTTA
**
51659259 GGGAGACAAGGCT-GGTGGCTTAA
63 GGGAGACAAGAATCGGTGGCTTAA
* * *
51659282 ATCTGCTCCACTACTACTTAGGGAGACAAGATTAGCCATCTTCTATCTGCTCCA
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGA-TCGCTATCTTC-ATCTGCTCCA
51659336 TTGCTACCTC
Statistics
Matches: 249, Mismatches: 51, Indels: 29
0.76 0.16 0.09
Matches are distributed among these distances:
86 123 0.49
87 62 0.25
88 64 0.26
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (86 bp):
ATCTGCTCCACTACTGCTTAGGGAGACAAGATCGCTATCTTCATCTGCTCCACTACTGCTTAGGG
AGACAAGAATCGGTGGCTTAA
Found at i:51667573 original size:9 final size:9
Alignment explanation
Indices: 51667548--51667642 Score: 50
Period size: 9 Copynumber: 9.7 Consensus size: 9
51667538 AAACTATATG
51667548 ATAAATAATA
1 ATAAA-AATA
51667558 TATAAAAATA
1 -ATAAAAATA
51667568 ATAAAAATA
1 ATAAAAATA
*
51667577 AT-AGAATA
1 ATAAAAATA
*
51667585 AGTGAAATATA
1 A-T-AAAAATA
51667596 AT-AAAATAA
1 ATAAAAAT-A
51667605 ATAATATATATA
1 ATAA-A-A-ATA
*
51667617 GTAAAAATA
1 ATAAAAATA
*
51667626 TATAACATATA
1 -ATAA-AAATA
51667637 ATAAAA
1 ATAAAA
51667643 TGTGAATATA
Statistics
Matches: 66, Mismatches: 8, Indels: 22
0.69 0.08 0.23
Matches are distributed among these distances:
8 10 0.15
9 19 0.29
10 14 0.21
11 16 0.24
12 5 0.08
13 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (9 bp):
ATAAAAATA
Found at i:51667607 original size:31 final size:30
Alignment explanation
Indices: 51667564--51667667 Score: 85
Period size: 31 Copynumber: 3.5 Consensus size: 30
51667554 AATATATAAA
51667564 AATAATAA-AAATAATAGAATAAGTGAAATAT
1 AATAA-AATAAATAATA-AATAAGTGAAATAT
* *
51667595 AATAAAATAAATAATATATATAGT-AAAAAT
1 AATAAAATAAATAATAAATA-AGTGAAATAT
* *
51667625 ATATAACAT--ATAATAAA-ATGTG-AATAT
1 A-ATAAAATAAATAATAAATAAGTGAAATAT
*
51667652 AATAGAATAAATAATA
1 AATAAAATAAATAATA
51667668 TATATAATAA
Statistics
Matches: 59, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
26 5 0.08
27 7 0.12
28 7 0.12
29 7 0.12
30 11 0.19
31 22 0.37
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.29
Consensus pattern (30 bp):
AATAAAATAAATAATAAATAAGTGAAATAT
Found at i:51667616 original size:21 final size:21
Alignment explanation
Indices: 51667591--51667738 Score: 73
Period size: 21 Copynumber: 7.3 Consensus size: 21
51667581 AATAAGTGAA
51667591 ATATAATAAAATAAATAATAT
1 ATATAATAAAATAAATAATAT
* * *
51667612 ATATAGTAAAA-ATAT-ATAAC
1 ATATAATAAAATAAATAAT-AT
* *
51667632 ATATAATAAAAT--GT--GA-
1 ATATAATAAAATAAATAATAT
*
51667648 ATATAATAGAATAAATAATAT
1 ATATAATAAAATAAATAATAT
* *
51667669 ATATAATAAAA-ACATAACAT
1 ATATAATAAAATAAATAATAT
* *
51667689 ATAGTAA-AATTTATAAA-AATGT
1 ATA-TAATAA--AATAAATAATAT
** *
51667711 ATATAATATTATAAATGATAT
1 ATATAATAAAATAAATAATAT
51667732 ATATAAT
1 ATATAAT
51667739 TTTTCATATA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
16 11 0.12
17 1 0.01
18 1 0.01
19 3 0.03
20 33 0.35
21 36 0.38
22 8 0.08
23 2 0.02
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (21 bp):
ATATAATAAAATAAATAATAT
Found at i:51667651 original size:57 final size:56
Alignment explanation
Indices: 51667551--51667698 Score: 178
Period size: 57 Copynumber: 2.6 Consensus size: 56
51667541 CTATATGATA
* *
51667551 AATA-ATATATAAAAATAATAA-AAATAATAGAATAAGTGAAATATAATAAAATAAAT
1 AATATATATATAAAAATAATAACATATAATA-AA-ATGTGAAATATAATAAAATAAAT
*
51667607 AATATATATAGTAAAAATATATAACATATAATAAAATGTG-AATATAATAGAATAAAT
1 AATATATATA-TAAAAATA-ATAACATATAATAAAATGTGAAATATAATAAAATAAAT
* *
51667664 AATATATATAATAAAAA-CATAACATATAGTAAAAT
1 AATATATAT-ATAAAAATAATAACATATAATAAAAT
51667699 TTATAAAAAT
Statistics
Matches: 82, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
55 16 0.20
56 4 0.05
57 36 0.44
58 13 0.16
59 6 0.07
60 7 0.09
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (56 bp):
AATATATATATAAAAATAATAACATATAATAAAATGTGAAATATAATAAAATAAAT
Found at i:51667669 original size:55 final size:54
Alignment explanation
Indices: 51667548--51667698 Score: 157
Period size: 55 Copynumber: 2.7 Consensus size: 54
51667538 AAACTATATG
* *
51667548 ATAAAT-A-ATATATAAAAATAATAA-AAATAATAGAATAAGTGAAATATAATAAA
1 ATAAATAATATATATAAAAATAATAACATATAATA-AA-ATGTGAAATATAATAAA
*
51667601 ATAAATAATATATATAGTAAAAATATATAACATATAATAAAATGTG-AATATAATAGA
1 ATAAAT-A-ATATATA-TAAAAATA-ATAACATATAATAAAATGTGAAATATAATAAA
* *
51667658 ATAAATAATATATATAATAAAAACATAACATATAGTAAAAT
1 ATAAATAATATATATAA-AAATA-ATAACATATAATAAAAT
51667699 TTATAAAAAT
Statistics
Matches: 84, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
53 6 0.07
54 3 0.04
55 27 0.32
56 2 0.02
57 21 0.25
58 12 0.14
59 6 0.07
60 7 0.08
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (54 bp):
ATAAATAATATATATAAAAATAATAACATATAATAAAATGTGAAATATAATAAA
Found at i:51669196 original size:23 final size:22
Alignment explanation
Indices: 51669170--51669238 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
51669160 TATATAATGT
51669170 AATAACAATGAAGACAAAAATAA
1 AATAACAATGAA-ACAAAAATAA
** *
51669193 AATAAGGATGAAACAATAAT--
1 AATAACAATGAAACAAAAATAA
* *
51669213 AATAA-AATAAAATAAAAATAA
1 AATAACAATGAAACAAAAATAA
51669234 CAATA
1 -AATA
51669239 CATTAATAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
19 10 0.28
20 5 0.14
22 11 0.31
23 10 0.28
ACGTcount: A:0.70, C:0.06, G:0.07, T:0.17
Consensus pattern (22 bp):
AATAACAATGAAACAAAAATAA
Found at i:51669215 original size:3 final size:3
Alignment explanation
Indices: 51669207--51669300 Score: 104
Period size: 3 Copynumber: 31.0 Consensus size: 3
51669197 AGGATGAAAC
* *
51669207 AAT AAT AAT AA- AAT AA- AAT AAA AAT AAC AAT ACATT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT
*
51669252 AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAT ACA- AATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA-T AAT AAT
51669298 AAT
1 AAT
51669301 GATGATGTAA
Statistics
Matches: 78, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
2 5 0.06
3 66 0.85
4 5 0.06
5 2 0.03
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:51669318 original size:28 final size:28
Alignment explanation
Indices: 51669207--51669318 Score: 88
Period size: 28 Copynumber: 4.0 Consensus size: 28
51669197 AGGATGAAAC
*
51669207 AATAATAATAA-AAT-AAAATAAAAA-T
1 AATAATAATAATAATGATAATAAAAATT
* * *
51669232 AACAATACATTAATAATAATAATAATAATAAT
1 AATAATA-A-TAATAATGATAATAA-AA-ATT
*
51669264 AATAATAATAATAATGATAATACAAATT
1 AATAATAATAATAATGATAATAAAAATT
* *
51669292 AATAATAATGATGATG-TAAGTAAAAAT
1 AATAATAATAATAATGATAA-TAAAAAT
51669319 ATAAGTAAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
25 6 0.09
26 1 0.01
27 6 0.09
28 25 0.36
29 8 0.11
30 15 0.21
31 2 0.03
32 7 0.10
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.29
Consensus pattern (28 bp):
AATAATAATAATAATGATAATAAAAATT
Found at i:51669547 original size:3 final size:3
Alignment explanation
Indices: 51669541--51669598 Score: 73
Period size: 3 Copynumber: 19.3 Consensus size: 3
51669531 AATAATACGT
* *
51669541 TAA TAA TAA TAA TAA TAG TAA -ATA TAA TAA TAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
*
51669586 TAA TAA AAA TAA T
1 TAA TAA TAA TAA T
51669599 TAATTTGAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
2 1 0.02
3 45 0.96
4 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:51675158 original size:20 final size:20
Alignment explanation
Indices: 51675125--51675164 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
51675115 TTATTATTAA
*
51675125 TTTTATATGTAAAATATATT
1 TTTTATATGTAAAAAATATT
51675145 TTTTATATAG-AAAAAATATT
1 TTTTATAT-GTAAAAAATATT
51675165 CATTCTCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
TTTTATATGTAAAAAATATT
Found at i:51678196 original size:6 final size:6
Alignment explanation
Indices: 51678185--51678225 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
51678175 ACCAAAGTGA
51678185 TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTC
1 TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTC
51678226 TTTTTCCTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (6 bp):
TCTTCC
Found at i:51680604 original size:14 final size:15
Alignment explanation
Indices: 51680585--51680613 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
51680575 TTTAATAGTT
51680585 TTAAATATT-TTTTA
1 TTAAATATTCTTTTA
51680599 TTAAATATTCTTTTA
1 TTAAATATTCTTTTA
51680614 ACATATTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TTAAATATTCTTTTA
Found at i:51680639 original size:17 final size:17
Alignment explanation
Indices: 51680617--51680655 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
51680607 TCTTTTAACA
51680617 TATTTA-CATTATAGTAT
1 TATTTATCATTATAG-AT
*
51680634 TATTTATTATTATAGAT
1 TATTTATCATTATAGAT
51680651 TATTT
1 TATTT
51680656 TTTATACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (17 bp):
TATTTATCATTATAGAT
Found at i:51685251 original size:19 final size:19
Alignment explanation
Indices: 51685209--51685251 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
51685199 TTAGATATCC
*
51685209 TTAAATTATGTTTCACATT
1 TTAAATTATGTTTCAAATT
*
51685228 CTAAATTTAT-TTTCAAATT
1 TTAAA-TTATGTTTCAAATT
51685247 TTAAA
1 TTAAA
51685252 ATGTTCTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.37, C:0.09, G:0.02, T:0.51
Consensus pattern (19 bp):
TTAAATTATGTTTCAAATT
Found at i:51689923 original size:37 final size:37
Alignment explanation
Indices: 51689873--51689946 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
51689863 AGTAGGGGAA
*
51689873 TGTTTTCGTCCTAGTAGAGGTCTTCAACAAGGTGACC
1 TGTTTTCATCCTAGTAGAGGTCTTCAACAAGGTGACC
*
51689910 TGTTTTCATCCTAGTAGAGGTCTTCGACAAGGTGACC
1 TGTTTTCATCCTAGTAGAGGTCTTCAACAAGGTGACC
51689947 CTTTGAGTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (37 bp):
TGTTTTCATCCTAGTAGAGGTCTTCAACAAGGTGACC
Found at i:51692653 original size:20 final size:20
Alignment explanation
Indices: 51692599--51692659 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
51692589 ATAGGCTTTT
*
51692599 GCTTTCCCAATAAAATATAG
1 GCTTTCCCAGTAAAATATAG
*
51692619 GCTTT---AG-ATAATATAG
1 GCTTTCCCAGTAAAATATAG
*
51692635 GCTTTCCCAGTAAAATATAA
1 GCTTTCCCAGTAAAATATAG
51692655 GCTTT
1 GCTTT
51692660 ATTGATATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 13 0.39
17 1 0.03
19 2 0.06
20 17 0.52
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.34
Consensus pattern (20 bp):
GCTTTCCCAGTAAAATATAG
Found at i:51693057 original size:51 final size:52
Alignment explanation
Indices: 51693001--51693111 Score: 145
Period size: 51 Copynumber: 2.2 Consensus size: 52
51692991 AATTTGTATA
* * * * *
51693001 TAAAAAATTTAACCCTCAACTTTTACATATTA-TATCAATTTAGTCATAATT-
1 TAAAAAAATTAACCCTCAAATATTACA-AATAGTATCAATTTAATCATAATTC
*
51693052 TAAAAAAATTAACCCTCAAATATTACAAATAGTTTCAATTTAATCATAATTC
1 TAAAAAAATTAACCCTCAAATATTACAAATAGTATCAATTTAATCATAATTC
51693104 TAAAAAAA
1 TAAAAAAA
51693112 GTTTTATGGA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
50 3 0.06
51 41 0.79
52 8 0.15
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (52 bp):
TAAAAAAATTAACCCTCAAATATTACAAATAGTATCAATTTAATCATAATTC
Found at i:51693377 original size:23 final size:22
Alignment explanation
Indices: 51693335--51693381 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
51693325 TACTATTATA
51693335 TTAATAATATTTTTTTTAATAT
1 TTAATAATATTTTTTTTAATAT
51693357 TTAA-AATATTATATTTTTAATAT
1 TTAATAATATT-T-TTTTTAATAT
51693380 TT
1 TT
51693382 TTAAACATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.26
22 5 0.22
23 12 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TTAATAATATTTTTTTTAATAT
Found at i:51693522 original size:15 final size:15
Alignment explanation
Indices: 51693483--51693524 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
51693473 TTTCAATTTT
*
51693483 ATTTT-AATAATA-A
1 ATTTTAAATAAAATA
51693496 ATTTTAAA-AAAATA
1 ATTTTAAATAAAATA
51693510 ATTTTAAATAAAATA
1 ATTTTAAATAAAATA
51693525 TTATTCACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 8 0.32
14 11 0.44
15 6 0.24
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTTTAAATAAAATA
Found at i:51693576 original size:15 final size:15
Alignment explanation
Indices: 51693551--51693612 Score: 52
Period size: 15 Copynumber: 3.8 Consensus size: 15
51693541 GAAAATATTC
51693551 AATATAATATTTTAAT
1 AATA-AATATTTTAAT
51693567 AATAAATATTTATTACAGT
1 AATAAATA-TT-TTA-A-T
* *
51693586 TATAAATATATTAAT
1 AATAAATATTTTAAT
*
51693601 AATAAATGTTTT
1 AATAAATATTTT
51693613 GTAGTATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
15 14 0.38
16 7 0.19
17 6 0.16
18 2 0.05
19 8 0.22
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (15 bp):
AATAAATATTTTAAT
Found at i:51694090 original size:14 final size:14
Alignment explanation
Indices: 51694071--51694109 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
51694061 CCAGAAAAGT
51694071 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
51694085 AAATCATTTTCTAG
1 AAATCATTTTCCAG
*
51694099 AAGTCATTTTC
1 AAATCATTTTC
51694110 AGTAAAACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:51698842 original size:29 final size:30
Alignment explanation
Indices: 51698778--51698843 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
51698768 ATTTGGCCTT
* * * *
51698778 ATTTGATTCTTTTTAATAGTACAGGTATTA
1 ATTTGATTCTATTTAATAATACAGGGACTA
* *
51698808 AATTGATT-TATTTAATAATAGAGGGACTA
1 ATTTGATTCTATTTAATAATACAGGGACTA
51698837 ATTTGAT
1 ATTTGAT
51698844 ACAGTAATAC
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
29 22 0.76
30 7 0.24
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (30 bp):
ATTTGATTCTATTTAATAATACAGGGACTA
Found at i:51703199 original size:18 final size:19
Alignment explanation
Indices: 51703176--51703218 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
51703166 ATTTAATTTT
* *
51703176 TATATAAAAATTACAT-AA
1 TATATAAAAATAAAATAAA
51703194 TATATAAAAATAAAATAAA
1 TATATAAAAATAAAATAAA
51703213 TATATA
1 TATATA
51703219 TATCATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
TATATAAAAATAAAATAAA
Done.