Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 17 of 250
Found at i:4923723 original size:52 final size:52
Alignment explanation
Indices: 4923606--4923756 Score: 195
Period size: 48 Copynumber: 3.0 Consensus size: 52
4923596 GCTCCCAACA
* *
4923606 AATTTCCTTCTTATTACATTGCTATCTTTGATTAAC---TT-ATTTCGAGTT
1 AATTTCTTTCTTATTGCATTGCTATCTTTGATTAACTTATTCATTTCGAGTT
* *
4923654 AATTTCCTTT-TTATTGCATTGTTATCTTTGATTAACTTATTCATTTTGAGTT
1 AATTT-CTTTCTTATTGCATTGCTATCTTTGATTAACTTATTCATTTCGAGTT
* *
4923706 AATTTCTTTCTTATTGCATTTGCAATCTTTGATTAATTTATTCATTTCGAG
1 AATTTCTTTCTTATTGCA-TTGCTATCTTTGATTAACTTATTCATTTCGAG
4923757 CTATACTCCC
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
48 29 0.33
49 3 0.03
51 6 0.07
52 22 0.25
53 28 0.32
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.54
Consensus pattern (52 bp):
AATTTCTTTCTTATTGCATTGCTATCTTTGATTAACTTATTCATTTCGAGTT
Found at i:4924457 original size:64 final size:64
Alignment explanation
Indices: 4924383--4924507 Score: 198
Period size: 64 Copynumber: 2.0 Consensus size: 64
4924373 TTCATAACAC
* * *
4924383 ATCTAGTTAGGAGCATTTGATTTATTTTGATCAT-AGCATCCTAGTTATTTGACATAAGCATCAT
1 ATCTAGTTAGGAGCATTTGATTCATTTCGATCATGA-CATCCTAATTATTTGACATAAGCATCAT
*
4924447 ATCTAGTTAGGAGCATTTGATTCATTTCGATCATGACATCCTAATTATTTGGCATAAGCAT
1 ATCTAGTTAGGAGCATTTGATTCATTTCGATCATGACATCCTAATTATTTGACATAAGCAT
4924508 GGATACATGA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
64 55 0.98
65 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (64 bp):
ATCTAGTTAGGAGCATTTGATTCATTTCGATCATGACATCCTAATTATTTGACATAAGCATCAT
Found at i:4924734 original size:45 final size:44
Alignment explanation
Indices: 4924683--4924867 Score: 124
Period size: 45 Copynumber: 4.2 Consensus size: 44
4924673 TCCCTAAGAA
* *
4924683 GTAGTGGAGTAGGTTGAAGATTGTAGATCTTGTCTCCTTGAAGTT
1 GTAGTGGAGCAGATTGAAGATTG-AGATCTTGTCTCCTTGAAGTT
* * * * * *
4924728 GTAGTGGAACAGATCGAAAATGGCGAACCTTGTCT-CTCTGAAGTT
1 GTAGTGGAGCAGATTGAAGATTGAG-ATCTTGTCTCCT-TGAAGTT
* * ** ** * * *
4924773 GCAGTGGAGCAGATTTAAG-CCGCCATCCTATCTCCTT-AAGTA
1 GTAGTGGAGCAGATTGAAGATTGAGATCTTGTCTCCTTGAAGTT
* ** *
4924815 GTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTT
1 GTAGTGGAGCAGATTGAAGATTG-AGATCTTGTCTCCTTGAAGTT
4924860 GTAGTGGA
1 GTAGTGGA
4924868 ACTGATCGAA
Statistics
Matches: 101, Mismatches: 33, Indels: 12
0.69 0.23 0.08
Matches are distributed among these distances:
42 18 0.18
43 8 0.08
44 17 0.17
45 58 0.57
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (44 bp):
GTAGTGGAGCAGATTGAAGATTGAGATCTTGTCTCCTTGAAGTT
Found at i:4924818 original size:132 final size:132
Alignment explanation
Indices: 4924574--4925013 Score: 643
Period size: 132 Copynumber: 3.3 Consensus size: 132
4924564 GGTGAATTTA
* * *
4924574 CAGATCTCGTCTCCCTGAAGTTGTAGTGGAATAGATCGAAGACGGCGAATCTCGTCTCTCTGAAG
1 CAGATCTTGTCTCCCTGAAGTTGTAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCTCTGAAG
* * *
4924639 TTGCAGTGGAGCAAATTTAAGCTACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGTTGAAGAT
66 TTGCAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGCTGAAGAT
4924704 TG
131 TG
* * * * *
4924706 TAGATCTTGTCTCCTTGAAGTTGTAGTGGAACAGATCGAAAATGGCGAACCTTGTCTCTCTGAAG
1 CAGATCTTGTCTCCCTGAAGTTGTAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCTCTGAAG
* * *
4924771 TTGCAGTGGAGCAGATTTAAGCCGCCATCCTATCTCCTTAAGTAGTAGTGGAGTAGGCTGAAGAT
66 TTGCAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGCTGAAGAT
4924836 TG
131 TG
* *
4924838 CAGATCTTGTCTCCCTGAAGTTGTAGTGGAACTGATCGAAGACGGCGAATCTTGTCTCCCTGACC
1 CAGATCTTGTCTCCCTGAAGTTGTAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCTCTGA--
* * *
4924903 AG-T--AGTGGAACGGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAG
64 AGTTGCAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGCTGAAG
4924965 ATTG
129 ATTG
* * *
4924969 CAGATCTTGTCTCTCTGAAGTTGCAGTGGAACAGATCAAAGACGG
1 CAGATCTTGTCTCCCTGAAGTTGTAGTGGAACAGATCGAAGACGG
4925014 TGAGCCTTAA
Statistics
Matches: 276, Mismatches: 30, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
131 99 0.36
132 174 0.63
133 1 0.00
134 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (132 bp):
CAGATCTTGTCTCCCTGAAGTTGTAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCTCTGAAG
TTGCAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGCTGAAGAT
TG
Found at i:4925070 original size:131 final size:130
Alignment explanation
Indices: 4924665--4925088 Score: 374
Period size: 131 Copynumber: 3.2 Consensus size: 130
4924655 TTAAGCTACC
* * * * * *
4924665 ATCCTATCTCCCTAAGAAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTGTCTCCTTGAAGTTGT
1 ATCCTACCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTTGC
* ** * * * * * *
4924730 AGTGGAACAGATCGAAA-ATGGCGAACCTTGTCTCTCTGA-AGTTGCAGTGGAGCAGATTTAAGC
66 AGTGGAACAGATC-AAAGACGGCGAACCTTAACTCCCTGACAG-T--AGTGGAACGGACTGAAGA
* *
4924793 CGCC
127 CACA
* * * *
4924797 ATCCTATCTCCTTAAGTAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTTGT
1 ATCCTACCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTTGC
* * * ** * * *
4924862 AGTGGAACTGATCGAAGACGGCGAATCTTGTCTCCCTGACCAGTAGTGGAACGGATTTAAGCCAC
66 AGTGGAACAGATCAAAGACGGCGAACCTTAACTCCCTGA-CAGTAGTGGAACGGACTGAAGACAC
*
4924927 C
130 A
* *
4924928 ATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCTCTGAAGTTGC
1 ATCCTACCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTTGC
* * * *
4924993 AGTGGAACAGATCAAAGACGGTGAGCCTTAAC-CCCTTA-AGTAGTAGGGTAACAGG-CTGAATT
66 AGTGGAACAGATCAAAGACGGCGAACCTTAACTCCCTGACAGTAGT--GG-AAC-GGACTGAA-G
4925055 ACA-A
126 ACACA
* *
4925059 ATCTTACCTCCCTAAGCAGTAGTAGAGTAG
1 ATCCTACCTCCCTAAGCAGTAGTGGAGTAG
4925089 ATCAAAGACG
Statistics
Matches: 251, Mismatches: 33, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
128 6 0.02
130 7 0.03
131 140 0.56
132 95 0.38
133 1 0.00
134 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (130 bp):
ATCCTACCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGTCTCCCTGAAGTTGC
AGTGGAACAGATCAAAGACGGCGAACCTTAACTCCCTGACAGTAGTGGAACGGACTGAAGACACA
Found at i:4925312 original size:88 final size:88
Alignment explanation
Indices: 4925191--4925701 Score: 684
Period size: 88 Copynumber: 5.8 Consensus size: 88
4925181 AAATCAACAA
* * * * *
4925191 TTCGTATCTCCTTGAAGTTTCAACGGAGAAGATCGAGTCTACAAACCTCTTCTCCCTGAAATGG-
1 TTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGC
* *
4925255 AGTTGGAGTGGCTCGAAGCCACAT
66 A-TTGGAGCGGCTCGAAGCCACAG
*
4925279 TTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCTCTGAAATGGC
1 TTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGC
*
4925344 ATTGGAGCGACTCGAAGCCACAG
66 ATTGGAGCGGCTCGAAGCCACAG
** *
4925367 TTCGTATCTCCTTGAAG-TTCTAGCAGAGTAGATCGAAACTACAAATCTCTTCTCCTTGAAATGG
1 TTCGTATCTCCTTGAAGTTTC-AGCAGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGG
*
4925431 CATTGGAGCGGCTTGAAGCCACAG
65 CATTGGAGCGGCTCGAAGCCACAG
* * ** *
4925455 TTAGTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAGGCTACAAATCTCTTCTCCTTGAAATGGC
1 TTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGC
* * *
4925520 ACTGGAGTGGCTCGAAGCCATAG
66 ATTGGAGCGGCTCGAAGCCACAG
* * *
4925543 TTCGTATCTCCTTGAAGTTTGAGCAGAGTAGATCGAGGCTACAAATCTCTTTTCCCTAAAATGGC
1 TTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGC
*
4925608 ATTGGAGCGGCTCGAAGCCACGG
66 ATTGGAGCGGCTCGAAGCCACAG
* * ** * ** * *
4925631 TTCATATCTCCTTGAAGTTCCAGTGGGGTAGATCGAACCTACAAATATCTTCTCTCTGAAATGGC
1 TTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGC
4925696 ATTGGA
66 ATTGGA
4925702 ACAGACTAAA
Statistics
Matches: 371, Mismatches: 49, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
87 3 0.01
88 365 0.98
89 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (88 bp):
TTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGC
ATTGGAGCGGCTCGAAGCCACAG
Found at i:4925509 original size:44 final size:44
Alignment explanation
Indices: 4925197--4925684 Score: 146
Period size: 44 Copynumber: 11.1 Consensus size: 44
4925187 ACAATTCGTA
* ** * *
4925197 TCTCCTTGAAGTTTCAACGGAGAAGATCG-AGTCTACAAACCTCT
1 TCTCCTTGAAGTTGCAGTGGAGTAGATCGAAG-CTACAAATCTCT
* * * * * * *
4925241 TCTCCCTGAA-ATGGAGTTGGAGTGGCTCGAAGC--CACATTTCGT
1 TCTCCTTGAAGTTGCAG-TGGAGTAGATCGAAGCTACAAATCTC-T
* ** *
4925284 ATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCT
1 -TCTCCTTGAAGTTGCAGTGGAGTAGATCGAAGCTACAAATCTCT
* * * * * *
4925329 TCT-CTCTGAAATGGCATTGGAG-CGACTCGAAGCCAC-AGT-TCGT
1 TCTCCT-TGAAGTTGCAGTGGAGTAGA-TCGAAGCTACAAATCTC-T
** *
4925372 ATCTCCTTGAAGTT-CTAGCAGAGTAGATCGAAACTACAAATCTCT
1 -TCTCCTTGAAGTTGC-AGTGGAGTAGATCGAAGCTACAAATCTCT
* * * ** * * * * *
4925417 TCTCCTTGAAATGGCATTGGAGCGGCTTGAAGCCAC-AGT-TAGT
1 TCTCCTTGAAGTTGCAGTGGAGTAGATCGAAGCTACAAATCT-CT
* *
4925460 ATCTCCTTGAAGTTCCAGTGGAGTAGATCGAGGCTACAAATCTCT
1 -TCTCCTTGAAGTTGCAGTGGAGTAGATCGAAGCTACAAATCTCT
* * * * * *
4925505 TCTCCTTGAAATGGCACTGGAGTGGCTCGAAGC--CATAGT-TCGT
1 TCTCCTTGAAGTTGCAGTGGAGTAGATCGAAGCTACA-AATCTC-T
** *
4925548 ATCTCCTTGAAGTTTG-AGCAGAGTAGATCGAGGCTACAAATCTCT
1 -TCTCCTTGAAG-TTGCAGTGGAGTAGATCGAAGCTACAAATCTCT
* * * * * * ** * * **
4925593 TTTCCCTAAAATGGCATTGGAGCGGCTCGAAGCCAC-GGT-TCAT
1 TCTCCTTGAAGTTGCAGTGGAGTAGATCGAAGCTACAAATCTC-T
* * * *
4925636 ATCTCCTTGAAGTTCCAGTGGGGTAGATCGAACCTACAAATATCT
1 -TCTCCTTGAAGTTGCAGTGGAGTAGATCGAAGCTACAAATCTCT
4925681 TCTC
1 TCTC
4925685 TCTGAAATGG
Statistics
Matches: 297, Mismatches: 114, Indels: 66
0.62 0.24 0.14
Matches are distributed among these distances:
42 14 0.05
43 21 0.07
44 223 0.75
45 24 0.08
46 15 0.05
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (44 bp):
TCTCCTTGAAGTTGCAGTGGAGTAGATCGAAGCTACAAATCTCT
Found at i:4925549 original size:264 final size:264
Alignment explanation
Indices: 4925194--4925701 Score: 777
Period size: 264 Copynumber: 1.9 Consensus size: 264
4925184 TCAACAATTC
* * *
4925194 GTATCTCCTTGAAGTTTCAACGGAGAAGATCGAGTCTACAAACCTCTTCTCCCTGAAATGGAGTT
1 GTATCTCCTTGAAGTTCCAACGGAGAAGATCGAGGCTACAAACCTCTTCTCCCTGAAATGGAGCT
*
4925259 GGAGTGGCTCGAAGCCACATTTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAA
66 GGAGTGGCTCGAAGCCACAGTTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAA
* * * *
4925324 TCTCTTCTCTCTGAAATGGCATTGGAGCGACTCGAAGCCACAGTTCGTATCTCCTTGAAGTTCTA
131 TCTCTTCTCCCTAAAATGGCATTGGAGCGACTCGAAGCCACAGTTCATATCTCCTTGAAGTTCCA
*
4925389 GCAGAGTAGATCGAAACTACAAATCTCTTCTC-CTTGAAATGGCATTGGAGCGGCTTGAAGCCAC
196 GCAGAGTAGATCGAAACTACAAATATCTTCTCTC-TGAAATGGCATTGGAGCGGCTTGAAGCCAC
4925453 AGTTA
260 AGTTA
** * * *
4925458 GTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAGGCTACAAATCTCTTCTCCTTGAAATGGCA-C
1 GTATCTCCTTGAAGTTCCAACGGAGAAGATCGAGGCTACAAACCTCTTCTCCCTGAAATGG-AGC
* *
4925522 TGGAGTGGCTCGAAGCCATAGTTCGTATCTCCTTGAAGTTTGAGCAGAGTAGATCGAGGCTACAA
65 TGGAGTGGCTCGAAGCCACAGTTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAA
* * *
4925587 ATCTCTTTTCCCTAAAATGGCATTGGAGCGGCTCGAAGCCACGGTTCATATCTCCTTGAAGTTCC
130 ATCTCTTCTCCCTAAAATGGCATTGGAGCGACTCGAAGCCACAGTTCATATCTCCTTGAAGTTCC
** * *
4925652 AGTGGGGTAGATCGAACCTACAAATATCTTCTCTCTGAAATGGCATTGGA
195 AGCAGAGTAGATCGAAACTACAAATATCTTCTCTCTGAAATGGCATTGGA
4925702 ACAGACTAAA
Statistics
Matches: 219, Mismatches: 23, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
264 217 0.99
265 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (264 bp):
GTATCTCCTTGAAGTTCCAACGGAGAAGATCGAGGCTACAAACCTCTTCTCCCTGAAATGGAGCT
GGAGTGGCTCGAAGCCACAGTTCGTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAGGCTACAAA
TCTCTTCTCCCTAAAATGGCATTGGAGCGACTCGAAGCCACAGTTCATATCTCCTTGAAGTTCCA
GCAGAGTAGATCGAAACTACAAATATCTTCTCTCTGAAATGGCATTGGAGCGGCTTGAAGCCACA
GTTA
Found at i:4925762 original size:264 final size:264
Alignment explanation
Indices: 4925229--4925766 Score: 715
Period size: 264 Copynumber: 2.0 Consensus size: 264
4925219 AAGATCGAGT
* *
4925229 CTACAAACCTCTTCTCCCTGAAATGGAGTTGGAGTGGCTCGAAGCCACATTTCGTATCTCCTTGA
1 CTACAAACCTCTTCTCCCTGAAATGGAGCTGGAGTGGCTCGAAGCCACAGTTCGTATCTCCTTGA
* *
4925294 AGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCTCTGAAATGGCATTGGAGCGACTCGA
66 AGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCCCTAAAATGGCATTGGAGCGACTCGA
* * *
4925359 AGCCACAGTTCGTATCTCCTTGAAGTTCTAGCAGAGTAGATCGAAACTACAAATCTCTTCTCCTT
131 AGCCACAGTTCATATCTCCTTGAAGTTCCAGCAGAGTAGATCGAAACTACAAATATCTTCTCCTT
* * * * * * **
4925424 GAAATGGCATTGGAGCGGCTTGAAGCCACAGTTAGTATCTCCTTGAAGTTCCAGTGGAGTAGATC
196 GAAATGGCATTGGAACGACTTAAAGACACAATTAGTATCTCCCTGAAGTTCCAGTGGAACAGATC
* *
4925489 GAGG
261 AAAG
* * *
4925493 CTACAAATCTCTTCTCCTTGAAATGGCA-CTGGAGTGGCTCGAAGCCATAGTTCGTATCTCCTTG
1 CTACAAACCTCTTCTCCCTGAAATGG-AGCTGGAGTGGCTCGAAGCCACAGTTCGTATCTCCTTG
* * *
4925557 AAGTTTGAGCAGAGTAGATCGAGGCTACAAATCTCTTTTCCCTAAAATGGCATTGGAGCGGCTCG
65 AAGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCCCTAAAATGGCATTGGAGCGACTCG
* ** * *
4925622 AAGCCACGGTTCATATCTCCTTGAAGTTCCAGTGGGGTAGATCGAACCTACAAATATCTTCT-CT
130 AAGCCACAGTTCATATCTCCTTGAAGTTCCAGCAGAGTAGATCGAAACTACAAATATCTTCTCCT
* * **
4925686 CTGAAATGGCATTGGAACAGAC-TAAAGATACCAATT-TTATCTCCCTGAAGTTGTAGTGGAACA
195 -TGAAATGGCATTGGAAC-GACTTAAAGACA-CAATTAGTATCTCCCTGAAGTTCCAGTGGAACA
*
4925749 GATTAAAG
257 GATCAAAG
4925757 CTACAAACCT
1 CTACAAACCT
4925767 TATCCCCCTG
Statistics
Matches: 236, Mismatches: 34, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
263 2 0.01
264 227 0.96
265 7 0.03
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (264 bp):
CTACAAACCTCTTCTCCCTGAAATGGAGCTGGAGTGGCTCGAAGCCACAGTTCGTATCTCCTTGA
AGTTTCAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCCCTAAAATGGCATTGGAGCGACTCGA
AGCCACAGTTCATATCTCCTTGAAGTTCCAGCAGAGTAGATCGAAACTACAAATATCTTCTCCTT
GAAATGGCATTGGAACGACTTAAAGACACAATTAGTATCTCCCTGAAGTTCCAGTGGAACAGATC
AAAG
Found at i:4925871 original size:45 final size:44
Alignment explanation
Indices: 4925722--4926019 Score: 215
Period size: 44 Copynumber: 6.6 Consensus size: 44
4925712 GATACCAATT
* * * *
4925722 TTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAACC
* * * * * **
4925766 TTATCCCCCTGAAGTGGCAGTGGGGCAGGTTGAAGTTACAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAACC
* * * *
4925810 TTATCTCCCTGGAGTTGCAGTGGAGCAGACTGGAGATAGCAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAACC
* * * *
4925855 TTATCTCCATGAAGTTGCAAT-GAGGCAAATTGAAGCTACAAACCACAAACC
1 TTATCTCCCTGAAGTTGCAGTGGA-GCAGATTGAAG------A-TACAAACC
* * *
4925906 TTATCTCCTTGAATTTGCAGTGGAGCAGACTGAAGATAGCAAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAACC
* * * * * **
4925951 TTATCTCCCCGAAGTAGTAGTGGAGCAGGTT-AA-ATTATAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TACAAACC
4925994 TTATCTCCCTGAAGTTGCAGTGGAGC
1 TTATCTCCCTGAAGTTGCAGTGGAGC
4926020 GGGTCAAAAC
Statistics
Matches: 196, Mismatches: 46, Indels: 25
0.73 0.17 0.09
Matches are distributed among these distances:
43 27 0.14
44 71 0.36
45 62 0.32
51 33 0.17
52 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAACC
Found at i:4925940 original size:51 final size:52
Alignment explanation
Indices: 4925849--4925950 Score: 118
Period size: 51 Copynumber: 2.0 Consensus size: 52
4925839 CTGGAGATAG
* * *
4925849 CAAATCTTATCTCCATGAAGTTGCAATGAGGCAAATTGAAGCTA-CAAACCA
1 CAAACCTTATCTCCATGAAGTTGCAATGAGGCAAACTGAAGATAGCAAACCA
* * * *
4925900 CAAACCTTATCTCCTTGAATTTGCAGTG-GAGCAGACTGAAGATAGCAAACC
1 CAAACCTTATCTCCATGAAGTTGCAATGAG-GCAAACTGAAGATAGCAAACC
4925951 TTATCTCCCC
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
50 1 0.02
51 35 0.83
52 6 0.14
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.24
Consensus pattern (52 bp):
CAAACCTTATCTCCATGAAGTTGCAATGAGGCAAACTGAAGATAGCAAACCA
Found at i:4927509 original size:17 final size:17
Alignment explanation
Indices: 4927475--4927522 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
4927465 TTTTAACTGC
*
4927475 ATTTATTTTTATTTTTAT
1 ATTTATTTTT-TTGTTAT
4927493 ATTTATTTTTTTGTTAT
1 ATTTATTTTTTTGTTAT
* *
4927510 AGTTATTATTTTG
1 ATTTATTTTTTTG
4927523 AGACCTTACT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 17 0.63
18 10 0.37
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (17 bp):
ATTTATTTTTTTGTTAT
Found at i:4928785 original size:126 final size:126
Alignment explanation
Indices: 4928554--4928814 Score: 364
Period size: 126 Copynumber: 2.1 Consensus size: 126
4928544 GTCGACTTTA
* * ** *
4928554 TAAAACAAAGGCGAAGTTTGATGTTTAGCAATTCGAGGGTTCATGCCCTAATGTGTTGGGTTTCA
1 TAAAACAAAGGCGAAGTTTGATGTTTAGAAATTCAAGGAATCATGCCCTAATGTGATGGGTTTCA
*
4928619 ATCTTTCGTTTGTTTAAATAATCAAATTTCCTTTTAAAA-TTTCGTCCTGTTTTCTAAACCT
66 ATCTTTCGTTTGTCTAAATAATCAAATTTCCTTTTAAAATTTTCGTCCTGTTTTCTAAA-CT
* * *
4928680 TAAAACAAAGGCGATGTTTGATGTTTAGAAATTCAAGGAATCATGCTCTAATGTGATGGGTTTCG
1 TAAAACAAAGGCGAAGTTTGATGTTTAGAAATTCAAGGAATCATGCCCTAATGTGATGGGTTTCA
* ** *
4928745 ATCTTTCGTTTGTCTAAATAATCAGATTTCCCTTTT-AAATTTTTTTCGTGTTTTCTAAACT
66 ATCTTTCGTTTGTCTAAATAATCAAATTT-CCTTTTAAAATTTTCGTCCTGTTTTCTAAACT
4928806 TCAAAACAA
1 T-AAAACAA
4928815 GACAATATTT
Statistics
Matches: 119, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
126 90 0.76
127 29 0.24
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (126 bp):
TAAAACAAAGGCGAAGTTTGATGTTTAGAAATTCAAGGAATCATGCCCTAATGTGATGGGTTTCA
ATCTTTCGTTTGTCTAAATAATCAAATTTCCTTTTAAAATTTTCGTCCTGTTTTCTAAACT
Found at i:4928882 original size:126 final size:126
Alignment explanation
Indices: 4928570--4928872 Score: 317
Period size: 126 Copynumber: 2.4 Consensus size: 126
4928560 AAAGGCGAAG
* * *** * * *
4928570 TTTGATGTTTAGCAATTCGAGGGTTCATGCCCTAATGTGTTGGGTTTCAATCTTTCGTTTGTTTA
1 TTTGATGTTTAGAAATTCAAGAAATCATGCCCTAACGTGATGGGTTTCAATCTTTCGTTTGTCTA
* * *
4928635 AATAATCAAATTTCCTTTTAAAATTTCGTCCTGTTTTCTAAACCTTAAAACAAAGGCGATG
66 AATAATCAAATTTCCTTTTAAAATTTCGTCCTGTTTTCTAAACCTTAAAACAAAGACAATA
* * * *
4928696 TTTGATGTTTAGAAATTCAAGGAATCATGCTCTAATGTGATGGGTTTCGATCTTTCGTTTGTCTA
1 TTTGATGTTTAGAAATTCAAGAAATCATGCCCTAACGTGATGGGTTTCAATCTTTCGTTTGTCTA
* * ** *
4928761 AATAATCAGATTTCCCTTTTAAATTTTTTTCGTGTTTTCTAAA-CTTCAAAAC-AAGACAATA
66 AATAATCAAATTT-CCTTTTAAAATTTCGTCCTGTTTTCTAAACCTT-AAAACAAAGACAATA
* ** * *
4928822 TTTCG-TGTTTGGAAATTTTGAGAAATCGTGCCCT-ACGTGCTGGGTTTCAAT
1 TTT-GATGTTTAGAAA-TTCAAGAAATCATGCCCTAACGTGATGGGTTTCAAT
4928873 TTACCGTTTG
Statistics
Matches: 148, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
126 104 0.70
127 44 0.30
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (126 bp):
TTTGATGTTTAGAAATTCAAGAAATCATGCCCTAACGTGATGGGTTTCAATCTTTCGTTTGTCTA
AATAATCAAATTTCCTTTTAAAATTTCGTCCTGTTTTCTAAACCTTAAAACAAAGACAATA
Found at i:4938259 original size:104 final size:105
Alignment explanation
Indices: 4938075--4938344 Score: 296
Period size: 104 Copynumber: 2.6 Consensus size: 105
4938065 ACATGGTCAG
* * * * * * *
4938075 GGACATGGGCATGTGCCTAGGCCGTGTGAGCCACACGGGCAAGGACATGGACGTGTTTCCAGGCT
1 GGACATGGACATGTGCCCAAGCCGTGTGAGCCACACAGGCAAGGACATGGGCGTGTGTCCAGGCC
* * * * *
4938140 GTGTAACTCATTGTTTATGCA-TTAGAACCACACGGGCAA-
66 GTGCAACACACTGTTTATG-ATTTAAAACCACACGAGCAAT
* *
4938179 GGACATGGACATGTGCCCAAGCCGTGTGAGCCATATAGGCAAGGACATGGGCGTGTGTCCAGGCC
1 GGACATGGACATGTGCCCAAGCCGTGTGAGCCACACAGGCAAGGACATGGGCGTGTGTCCAGGCC
* * *
4938244 GTGCAACAGACTGTTTATGATTTAAAACCATATGAGCAAT
66 GTGCAACACACTGTTTATGATTTAAAACCACACGAGCAAT
* ** * *
4938284 GG-CATGGACGTGTGCCC-AGGTGATGTGAGCTACACAGGCAAGGACATGGGTGTGTGTCCAG
1 GGACATGGACATGTGCCCAAGCCG-TGTGAGCCACACAGGCAAGGACATGGGCGTGTGTCCAG
4938345 ATCGTATGGC
Statistics
Matches: 139, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
103 4 0.03
104 133 0.96
105 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.21
Consensus pattern (105 bp):
GGACATGGACATGTGCCCAAGCCGTGTGAGCCACACAGGCAAGGACATGGGCGTGTGTCCAGGCC
GTGCAACACACTGTTTATGATTTAAAACCACACGAGCAAT
Found at i:4939156 original size:25 final size:25
Alignment explanation
Indices: 4939128--4939175 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
4939118 GCAGTATTGC
*
4939128 TCTACTCTGTTCCATTCTGTTCTGT
1 TCTACTCTATTCCATTCTGTTCTGT
**
4939153 TCTACTCTATTCGGTTCTGTTCT
1 TCTACTCTATTCCATTCTGTTCT
4939176 ATTTGAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.08, C:0.27, G:0.12, T:0.52
Consensus pattern (25 bp):
TCTACTCTATTCCATTCTGTTCTGT
Found at i:4942011 original size:19 final size:19
Alignment explanation
Indices: 4941987--4942061 Score: 111
Period size: 19 Copynumber: 4.1 Consensus size: 19
4941977 ATAATCTTCA
4941987 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
4942006 ATGATATGAAATCTTAGAT
1 ATGATATGCAATCTTAGAT
4942025 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
4942042 ATGAT-TGCAATCTTATAT
1 ATGATATGCAATCTTAGAT
4942060 AT
1 AT
4942062 TGTAGACACT
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
17 15 0.29
18 12 0.24
19 24 0.47
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:4942025 original size:14 final size:15
Alignment explanation
Indices: 4942008--4942045 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
4941998 TCTTAGATAT
4942008 GATATGA-AATCTTA
1 GATATGACAATCTTA
4942022 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
4942039 GATATGA
1 GATATGA
4942046 TTGCAATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
16 1 0.05
17 13 0.62
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:4942264 original size:262 final size:262
Alignment explanation
Indices: 4941789--4942579 Score: 1426
Period size: 262 Copynumber: 3.0 Consensus size: 262
4941779 ACAATTGATT
* *
4941789 TCTTAAATAGTTGTAGATACTCAATTTTGCCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAAT
1 TCTTAAATA-TTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAAT
* *
4941854 AAACCCAAAAAAAAACGAAGTCCAAGTTCAGTCCAGAATTACAAATAAGATTTGGCCCGATCGGA
65 AAACCCAAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATATGATTTGGCCCGATCGGA
4941919 ATGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCT
130 ATGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCT
*
4941984 TCAATGATATGCAATCTTAGATATGATATGAAATCTTAGATATGATACAATCTTAGATATGATTG
195 TCAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTG
4942049 CAA
260 CAA
* * *
4942052 TCTTATATATTGTAGACACTCAATTTTACCCGGACCCATAAATAAGTCCAAAAACAAAAATAATA
1 TCTTAAATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAATA
4942117 AACCCAAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATATGATTTGGCCCGATCGGAA
66 AACCCAAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATATGATTTGGCCCGATCGGAA
4942182 TGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTT
131 TGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTT
4942247 CAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGC
196 CAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGC
4942312 AA
261 AA
*
4942314 TCTTAGATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAATA
1 TCTTAAATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAATA
*
4942379 AACCC-AAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATATGATTTGGCCCGATCGAAA
66 AACCCAAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATATGATTTGGCCCGATCGGAA
*
4942443 TGACCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTT
131 TGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTT
*
4942508 CAATGATATGCAATCTTAGATATGATA--CAATCTTAGATATGATTGCAATCTTAGATATGATAT
196 CAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGA-TACAATCTTAGATATGAT-T
4942571 GCAA
259 GCAA
4942575 TCTTA
1 TCTTA
4942580 GAAGATATGA
Statistics
Matches: 512, Mismatches: 14, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
259 15 0.03
260 17 0.03
261 159 0.31
262 313 0.61
263 8 0.02
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (262 bp):
TCTTAAATATTGTAGACACTCAATTTTACCCGGGCCCAGAAATAAGTCCAAAAACAAAAATAATA
AACCCAAAAAAAAACGAAGTCCAAGTTCAATCCAGAATTACAAATATGATTTGGCCCGATCGGAA
TGGCCCATTACTTGAAAAGATTTAAGGTCCATCTACAAGCTTGACTCATATGGAAATATAATCTT
CAATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGC
AA
Found at i:4942273 original size:19 final size:19
Alignment explanation
Indices: 4942249--4942323 Score: 129
Period size: 19 Copynumber: 4.1 Consensus size: 19
4942239 ATAATCTTCA
4942249 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
4942268 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
4942287 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
4942304 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
4942322 AT
1 AT
4942324 TGTAGACACT
Statistics
Matches: 54, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.30
18 13 0.24
19 25 0.46
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:4942531 original size:14 final size:15
Alignment explanation
Indices: 4942512--4942567 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
4942502 AATCTTCAAT
4942512 GATATG-CAATCTTA
1 GATATGACAATCTTA
4942526 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
4942543 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
4942561 GATATGA
1 GATATGA
4942568 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:4942556 original size:35 final size:37
Alignment explanation
Indices: 4942510--4942588 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
4942500 ATAATCTTCA
4942510 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
4942546 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
4942582 A-GATATG
1 ATGATATG
4942589 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:4942588 original size:17 final size:19
Alignment explanation
Indices: 4942510--4942581 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
4942500 ATAATCTTCA
4942510 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
4942529 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
4942546 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
4942564 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
4942582 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:4942607 original size:22 final size:22
Alignment explanation
Indices: 4942510--4942604 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
4942500 ATAATCTTCA
4942510 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
4942529 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
4942546 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
4942564 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
4942586 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
4942605 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:4942895 original size:17 final size:17
Alignment explanation
Indices: 4942871--4942905 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
4942861 TGTTTCCCTG
*
4942871 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
4942889 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
4942906 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:4945423 original size:26 final size:25
Alignment explanation
Indices: 4945387--4945470 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 25
4945377 TGATACAAAT
4945387 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTC-A
4945413 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
4945439 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
4945465 TGATAA
1 TGATAA
4945471 GAATTTCATG
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
26 52 0.95
27 3 0.05
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:4946977 original size:26 final size:27
Alignment explanation
Indices: 4946923--4946985 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 27
4946913 AATTACTATA
* *
4946923 ATACCCCTATGTATGGAAAATTACTGTT
1 ATACCCCTATG-ATGCAAAATTACCGTT
4946951 ATACCCCTATG-TGCAAAATTACCGTT
1 ATACCCCTATGATGCAAAATTACCGTT
4946977 ATACCCCTA
1 ATACCCCTA
4946986 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 22 0.67
28 11 0.33
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.32
Consensus pattern (27 bp):
ATACCCCTATGATGCAAAATTACCGTT
Found at i:4947120 original size:27 final size:27
Alignment explanation
Indices: 4947090--4947202 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 27
4947080 GAGGAAGCGT
* *
4947090 TCTGGTGGCTATTCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
4947117 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
4947144 TCTAGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
4947172 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
4947198 TCTGG
1 TCTGG
4947203 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
26 5 0.07
27 53 0.74
28 14 0.19
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:4959952 original size:21 final size:21
Alignment explanation
Indices: 4959926--4959966 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4959916 ATCTGCTCAA
* *
4959926 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
4959947 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
4959967 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:4964741 original size:21 final size:21
Alignment explanation
Indices: 4964715--4964755 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4964705 ATCTGCTCAA
* *
4964715 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
4964736 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
4964756 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:4971423 original size:86 final size:86
Alignment explanation
Indices: 4971291--4971462 Score: 258
Period size: 86 Copynumber: 2.0 Consensus size: 86
4971281 ATGAAAAATT
*
4971291 GAAAGGGTAGAAAAATAGAAAGAGAAAATATAAATTTTCTTTCCATATGTGTGCTTGGTAGGAAA
1 GAAAGGGTAGAAAAATAGAAAGAGAAAATATAAATTTTCTTTCCATATGTGTGCTTAGTAGGAAA
* **
4971356 GACGGAAAAATTGAAAGAAAA
66 GACGAAAAAATCAAAAGAAAA
*
4971377 GAAAGGG-AGAAAAATATAAAGATGGAAAATATAAA-TTTCTTTCCATATGTGTGCTTAGTAGGA
1 GAAAGGGTAGAAAAATAGAAAGA--GAAAATATAAATTTTCTTTCCATATGTGTGCTTAGTAGGA
*
4971440 AAGATGAAAAAATCAAAAGAAAA
64 AAGACGAAAAAATCAAAAGAAAA
4971463 AATATTTTCT
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
85 14 0.18
86 53 0.68
87 11 0.14
ACGTcount: A:0.49, C:0.06, G:0.22, T:0.23
Consensus pattern (86 bp):
GAAAGGGTAGAAAAATAGAAAGAGAAAATATAAATTTTCTTTCCATATGTGTGCTTAGTAGGAAA
GACGAAAAAATCAAAAGAAAA
Found at i:4972169 original size:14 final size:15
Alignment explanation
Indices: 4972150--4972178 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
4972140 GTCGTTAATG
4972150 GTTAC-GTCAACATT
1 GTTACGGTCAACATT
4972164 GTTACGGTCAACATT
1 GTTACGGTCAACATT
4972179 AGTCAAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (15 bp):
GTTACGGTCAACATT
Found at i:4972477 original size:163 final size:165
Alignment explanation
Indices: 4972171--4972479 Score: 464
Period size: 164 Copynumber: 1.9 Consensus size: 165
4972161 ATTGTTACGG
* * * *
4972171 TCAACATTAGTCAAAGGGCCTATTTGGCCAATTTTGTTAGTTTAGTGACTCAATTGGGTGCAAAA
1 TCAACATTAGTCAAAGGGCCTATTTGACCAATTTTGTTAGTTCAGGGACTCAATTAGGTGCAAAA
* **
4972236 AGTTCACAAGGGTTTAATTAATTTTTTTGAAAAAGTTTGAGGACCAAAAATACCATTAAGCCCTT
66 AGTACACAAGGACTTAATTAATTTTTTTGAAAAAGTTTGAGGACCAAAAATACCATTAAGCCCTT
4972301 CTTTAACTATTGATATATCCTTTTCTATGTATCAA
131 CTTTAACTATTGATATATCCTTTTCTATGTATCAA
*
4972336 TCAACATTAGTCAAAGGGCCTATTTGACCAA-TTTGTTAGTTCAGGGGCTCAATTAGGTGCAAAA
1 TCAACATTAGTCAAAGGGCCTATTTGACCAATTTTGTTAGTTCAGGGACTCAATTAGGTGCAAAA
* * * *
4972400 GGTACAC-AGGCACTTAATTGATTTTTTT-AAAAATGTTTGATGA-GAAAAATACCATTAAGCCC
66 AGTACACAAGG-ACTTAATTAATTTTTTTGAAAAA-GTTTGAGGACCAAAAATACCATTAAGCCC
4972462 TTCTTTAACTATTGATAT
129 TTCTTTAACTATTGATAT
4972480 GTCTTTTTTA
Statistics
Matches: 130, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
163 44 0.34
164 56 0.43
165 30 0.23
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.36
Consensus pattern (165 bp):
TCAACATTAGTCAAAGGGCCTATTTGACCAATTTTGTTAGTTCAGGGACTCAATTAGGTGCAAAA
AGTACACAAGGACTTAATTAATTTTTTTGAAAAAGTTTGAGGACCAAAAATACCATTAAGCCCTT
CTTTAACTATTGATATATCCTTTTCTATGTATCAA
Found at i:4973574 original size:34 final size:34
Alignment explanation
Indices: 4973534--4973598 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
4973524 AATCTGAATA
4973534 TGTATCATTAACATTATC-GAGATCATTTTTTATC
1 TGTATCATTAACATTATCAG-GATCATTTTTTATC
* *
4973568 TGTATCATTAATATTATCAGGATCTTTTTTT
1 TGTATCATTAACATTATCAGGATCATTTTTT
4973599 TATGCATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 27 0.96
35 1 0.04
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.51
Consensus pattern (34 bp):
TGTATCATTAACATTATCAGGATCATTTTTTATC
Found at i:4974910 original size:21 final size:22
Alignment explanation
Indices: 4974884--4974937 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
4974874 ACCCAATAAG
*
4974884 AAATATATAATTATAT-T-TTAA
1 AAATATA-AAATATATGTCTTAA
4974905 AAATATAAAATATATGTCTT-A
1 AAATATAAAATATATGTCTTAA
4974926 AAAT-TAAAATAT
1 AAATATAAAATAT
4974938 TCTATTATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 15 0.50
21 13 0.43
22 2 0.07
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (22 bp):
AAATATAAAATATATGTCTTAA
Found at i:4975952 original size:7 final size:8
Alignment explanation
Indices: 4975935--4975962 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
4975925 CAACAACTGA
4975935 TTTTTATT
1 TTTTTATT
4975943 TTTTTATT
1 TTTTTATT
4975951 TTTTTATT
1 TTTTTATT
4975959 TTTT
1 TTTT
4975963 GTGAGAGTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTATT
Found at i:4984777 original size:133 final size:133
Alignment explanation
Indices: 4984536--4984841 Score: 418
Period size: 133 Copynumber: 2.3 Consensus size: 133
4984526 CCGACTCTAC
*
4984536 AGATCTTGTCTCCCTGAAATTGCAGTGGAGCAGATCGAAGATGGCGAATCTCGCCTTCCTGAAGT
1 AGATCTTGTCTCCCTGAAATTGCAGTGGAGCAGATCGAAGATGGAGAATCTCGCCTTCCTGAAGT
* * * * *
4984601 TGCAGTGAAGCAGATTTAAGTCACCACCCTATCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAG-G
66 TGCAGTGAAGCAGATTTAAGCCACCACCCTATCTCCCTAAAGTTGCAGTGGAGCAGACCGAAGAG
4984665 TTGT
131 -TGT
* *
4984669 AGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGATGGAGAATCTCG-CTCTCCTGAAG
1 AGATCTTGTCTCCCTGAAATTGCAGTGGAGCAGATCGAAGATGGAGAATCTCGCCT-TCCTGAAG
* * * * * *
4984733 TTGCATTGAAGCAGATTTGAGCCACCATCTTATCTCTCTGAAGTTGCAGTGGAGCAGACCGAAGA
65 TTGCAGTGAAGCAGATTTAAGCCACCACCCTATCTCCCTAAAGTTGCAGTGGAGCAGACCGAAGA
4984798 GTGT
130 GTGT
* * * *
4984802 AGATCTTATCTCCCTGAAATTACAGTGGAACGGATCGAAG
1 AGATCTTGTCTCCCTGAAATTGCAGTGGAGCAGATCGAAG
4984842 TCACAATCCT
Statistics
Matches: 151, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
132 2 0.01
133 148 0.98
134 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (133 bp):
AGATCTTGTCTCCCTGAAATTGCAGTGGAGCAGATCGAAGATGGAGAATCTCGCCTTCCTGAAGT
TGCAGTGAAGCAGATTTAAGCCACCACCCTATCTCCCTAAAGTTGCAGTGGAGCAGACCGAAGAG
TGT
Found at i:4988069 original size:131 final size:131
Alignment explanation
Indices: 4987835--4988310 Score: 482
Period size: 131 Copynumber: 3.6 Consensus size: 131
4987825 TTATAATCAT
* * * * * *
4987835 TCATGTTTTCTAAAAATCCTTTAAAATGAAGGCGATGTACGATATTTGGAAATTCGCGGAATCGT
1 TCATGTTTTCTAAAAATTCTTTAAAATAAAGGCAATGTTCGATGTTTGGAAATTCG-AGAATCGT
* * * *
4987900 GCCCTAACGTGCTGGGTTGCAATTT-CTCGTTTGCTCAAAATAATCGAATGTCTCTTTAGAATTT
65 GCCCTATCGTGCTGGGTTGCGATTTCCT-GTTTGTTCAAAATAATCGAATATCTCTTTAGAATTT
*
4987964 CAT
129 CAC
* * * * *
4987967 TCATGTTTTCTAAAAACTCTTTAAAATAAAGGTAATATTTGATGTTTGGCAATTCGAGAATCGTG
1 TCATGTTTTCTAAAAATTCTTTAAAATAAAGGCAATGTTCGATGTTTGGAAATTCGAGAATCGTG
* **
4988032 CCCTATTGTGCTGGGTTGCGATTTCCTGTTTGTTCAAAACCATCGAATAT-TCCTTT-GAAATTT
66 CCCTATCGTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATCT-CTTTAG-AATTT
*
4988095 TAC
129 CAC
* * * * * * * * * *
4988098 CCATGTCTT-TAAAGATTCTATAAAACAAAGGTAACGTTTGATGTTTGGCAATTCAGGGAATCGT
1 TCATGTTTTCTAAAAATTCTTTAAAATAAAGGCAATGTTCGATGTTTGGAAATTC-GAGAATCGT
* * *
4988162 GCCCTATCGTGCTGGGTTGCGATTTCCTGTTGGTTCAAAATAATCAAATATCCCCTTTAGAATTT
65 GCCCTATCGTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATAT-CTCTTTAGAATTT
4988227 CAC
129 CAC
* * * *
4988230 TCATG-TTTCTTAAAAATTC-TAAAAAT-AAGGCAATGCTCGATGTCTAGAAATTCGAGGAATCG
1 TCATGTTTTC-TAAAAATTCTTTAAAATAAAGGCAATGTTCGATGTTTGGAAATTCGA-GAATCG
4988292 TGCCCTA-CTGTGCTGGGTT
64 TGCCCTATC-GTGCTGGGTT
4988311 TCGGTTTTAC
Statistics
Matches: 283, Mismatches: 50, Indels: 23
0.79 0.14 0.06
Matches are distributed among these distances:
130 43 0.15
131 164 0.58
132 67 0.24
133 9 0.03
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (131 bp):
TCATGTTTTCTAAAAATTCTTTAAAATAAAGGCAATGTTCGATGTTTGGAAATTCGAGAATCGTG
CCCTATCGTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATCTCTTTAGAATTTCA
C
Found at i:4989851 original size:24 final size:24
Alignment explanation
Indices: 4989823--4989882 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
4989813 GATAAAGAGT
* *
4989823 AAACCCCAAAAGCTCGAAAACAAA
1 AAACCCCAAAAACCCGAAAACAAA
*
4989847 AAACCTCAAAAACCCGAAAACAAA
1 AAACCCCAAAAACCCGAAAACAAA
*
4989871 GAACCCTCAAAA
1 AAACCC-CAAAA
4989883 CGTAAACACA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 25 0.83
25 5 0.17
ACGTcount: A:0.58, C:0.30, G:0.07, T:0.05
Consensus pattern (24 bp):
AAACCCCAAAAACCCGAAAACAAA
Found at i:4994635 original size:51 final size:51
Alignment explanation
Indices: 4994540--4994682 Score: 137
Period size: 53 Copynumber: 2.8 Consensus size: 51
4994530 AGAGAGGGAA
* * * * * ***
4994540 GCCAGAGTGAAAACCCGCAAAAGGCGCTTTAGGACTTTAAAAAAAA-AGGGG
1 GCCAAAGTGAAAACCCGCAAAGGGCACTTTAAGAC-TCAAAAAAAAGAAAAG
*
4994591 GCTAAAGTGAAAACCCGCAAAGGGCACTTTAAGAC-CAAATAAAAATGGAAAAG
1 GCCAAAGTGAAAACCCGCAAAGGGCACTTTAAGACTCAAA-AAAAA--GAAAAG
**
4994644 GCCAAAGTGAAAACCCGCAAAGGGCACTTTGGGACTCAA
1 GCCAAAGTGAAAACCCGCAAAGGGCACTTTAAGACTCAA
4994683 TAATAAAAAA
Statistics
Matches: 75, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
49 3 0.04
50 5 0.07
51 30 0.40
53 34 0.45
54 3 0.04
ACGTcount: A:0.43, C:0.20, G:0.24, T:0.13
Consensus pattern (51 bp):
GCCAAAGTGAAAACCCGCAAAGGGCACTTTAAGACTCAAAAAAAAGAAAAG
Found at i:5003267 original size:72 final size:71
Alignment explanation
Indices: 5003041--5003268 Score: 209
Period size: 72 Copynumber: 3.2 Consensus size: 71
5003031 TCCCAAAGAG
*
5003041 ATTGGGAATTTAGCAAATTTAACTTCATTAAGACTCTCCCAAAACAAATTGAGTGGTTCAATCCC
1 ATTGGGAATTTAGCAAATTTAACTTCATTAAGCCTCTCCCAAAACAAATTGAGTGGTTCAATCCC
* *
5003106 CTTTCT
66 ATTTGT
* * * * *
5003112 GATTGGGAATTTAG-AAGCA-TT-ACGTTTC-TT-AGACCTC-ACTAAGAACAGACTGATTGGTT
1 -ATTGGGAATTTAGCAA--ATTTAAC--TTCATTAAG-CCTCTCCCAA-AACAAATTGAGTGGTT
* *
5003171 CCATTCCCA-TTGAG
59 -CAATCCCATTTG-T
*
5003185 ATTGAGAATTTAGCAAATTTAACTTCATTAAGCCTCTCCCAAAACAAATTGAGTGGTTCAATCCC
1 ATTGGGAATTTAGCAAATTTAACTTCATTAAGCCTCTCCCAAAACAAATTGAGTGGTTCAATCCC
5003250 ATCTTGT
66 AT-TTGT
*
5003257 ATTGGCAATTTA
1 ATTGGGAATTTA
5003269 TCCAATTTGT
Statistics
Matches: 120, Mismatches: 20, Indels: 32
0.70 0.12 0.19
Matches are distributed among these distances:
71 20 0.17
72 78 0.65
73 22 0.18
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (71 bp):
ATTGGGAATTTAGCAAATTTAACTTCATTAAGCCTCTCCCAAAACAAATTGAGTGGTTCAATCCC
ATTTGT
Found at i:5005683 original size:3 final size:3
Alignment explanation
Indices: 5005677--5005725 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
5005667 GTTTTTTTAA
5005677 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
5005725 A
1 A
5005726 GTAGTAGTAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:5007159 original size:88 final size:88
Alignment explanation
Indices: 5007010--5007172 Score: 283
Period size: 88 Copynumber: 1.9 Consensus size: 88
5007000 ATGAAAAATT
5007010 GAAAGGGTAGAAAAATAGAAAGATGAAAAATATAAATTTTCTTTCCATATGTGTACGTGGTAGGA
1 GAAAGGGTAGAAAAATAGAAAGATGAAAAATATAAATTTTCTTTCCATATGTGTACGTGGTA-GA
5007075 A-AGATGGAAATTTTGAAAGAAAA
65 ACAGATGGAAATTTTGAAAGAAAA
* * *
5007098 GAAAGGGTAGAAAAATAGAAAGATGGAAAATATAAATTTTCTTTCCATATGTGTGCTTGGTAGAA
1 GAAAGGGTAGAAAAATAGAAAGATGAAAAATATAAATTTTCTTTCCATATGTGTACGTGGTAGAA
5007163 CAGATGGAAA
66 CAGATGGAAA
5007173 AATCAAAATA
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
87 3 0.04
88 68 0.96
ACGTcount: A:0.45, C:0.06, G:0.23, T:0.26
Consensus pattern (88 bp):
GAAAGGGTAGAAAAATAGAAAGATGAAAAATATAAATTTTCTTTCCATATGTGTACGTGGTAGAA
CAGATGGAAATTTTGAAAGAAAA
Found at i:5008185 original size:28 final size:24
Alignment explanation
Indices: 5008138--5008187 Score: 64
Period size: 28 Copynumber: 1.9 Consensus size: 24
5008128 CTAAATGGTT
5008138 TTTATTAATTTTTTATTTTTAAAC
1 TTTATTAATTTTTTATTTTTAAAC
5008162 TTTATTTAATATTTTATATATTTTAA
1 TTTA-TTAAT-TTTT-TAT-TTTTAA
5008188 TAATATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 4 0.18
25 5 0.23
26 4 0.18
27 3 0.14
28 6 0.27
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (24 bp):
TTTATTAATTTTTTATTTTTAAAC
Found at i:5008257 original size:13 final size:16
Alignment explanation
Indices: 5008209--5008263 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
5008199 ATTTTATAAA
*
5008209 ATTTTATAAAATATATT
1 ATTTTTTAAAA-ATATT
5008226 ATTTTTTAAAAATATT
1 ATTTTTTAAAAATATT
5008242 ATTTTTTAAAAATATT
1 ATTTTTTAAAAATATT
5008258 ATTTTT
1 ATTTTT
5008264 AATTTAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
16 27 0.73
17 10 0.27
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTTTTAAAAATATT
Found at i:5012202 original size:30 final size:30
Alignment explanation
Indices: 5012144--5012203 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
5012134 CATATTATTC
* *
5012144 TATATTTTCTTTTAAATCTTTATGTGTATA
1 TATATATTCTTTTAAATCTTTATATGTATA
*
5012174 TATATATTCTTTTAAAT-TTATTTATGTATA
1 TATATATTCTTTTAAATCTT-TATATGTATA
5012204 ACTTGCTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (30 bp):
TATATATTCTTTTAAATCTTTATATGTATA
Found at i:5013273 original size:50 final size:50
Alignment explanation
Indices: 5013194--5013291 Score: 169
Period size: 50 Copynumber: 2.0 Consensus size: 50
5013184 AATTTGGTAC
*
5013194 CATACGTAACCGGCTCCCGAACCCGTTTTTTTTTAAATCTACGTAGACCT
1 CATACGTAACCGGCTCCCGAACCCGTTTTTTTTAAAATCTACGTAGACCT
* *
5013244 CATACGTAACCGGCTCCCGAACTCTTTTTTTTTAAAATCTACGTAGAC
1 CATACGTAACCGGCTCCCGAACCCGTTTTTTTTAAAATCTACGTAGAC
5013292 TAAAATCGAT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.33
Consensus pattern (50 bp):
CATACGTAACCGGCTCCCGAACCCGTTTTTTTTAAAATCTACGTAGACCT
Found at i:5014296 original size:11 final size:11
Alignment explanation
Indices: 5014274--5014310 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
5014264 AAGCAATTTT
5014274 TATAAAATTATA
1 TATAAAA-TATA
*
5014286 TTTAAAATATA
1 TATAAAATATA
5014297 TATAAAATATA
1 TATAAAATATA
5014308 TAT
1 TAT
5014311 CCTAAAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 17 0.74
12 6 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
TATAAAATATA
Found at i:5018861 original size:26 final size:26
Alignment explanation
Indices: 5018824--5018907 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
5018814 TGATACAAAT
* *
5018824 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
5018850 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
5018876 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
5018902 TGATAA
1 TGATAA
5018908 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:5022609 original size:17 final size:17
Alignment explanation
Indices: 5022587--5022627 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
5022577 TTTTAATTCA
5022587 ATTTTAGTCT-TTT-TTT
1 ATTTTA-TCTATTTATTT
5022603 CATTTTATCTATTTATTT
1 -ATTTTATCTATTTATTT
5022621 ATTTTAT
1 ATTTTAT
5022628 TTTCGTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 3 0.14
17 16 0.73
18 3 0.14
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.71
Consensus pattern (17 bp):
ATTTTATCTATTTATTT
Found at i:5022678 original size:3 final size:3
Alignment explanation
Indices: 5022663--5022755 Score: 57
Period size: 3 Copynumber: 30.0 Consensus size: 3
5022653 TTACTAATAC
* * * **
5022663 TAT TAT T-T CTAT TAT TAT TAT TGT TAT TAT TAA TAT TCT GGT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
5022708 TAAA TAT TAT TAT T-T TAAT GTAT TAT TAT T-T CTAGT TAT TAT TAT
1 T-AT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT -TA-T TAT TAT TAT
5022753 TAT
1 TAT
5022756 ATATAATATT
Statistics
Matches: 70, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
2 4 0.06
3 56 0.80
4 8 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:5022731 original size:16 final size:16
Alignment explanation
Indices: 5022712--5022753 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
5022702 GGTTATTAAA
5022712 TATTATTATTT-TAAT
1 TATTATTATTTCTAAT
*
5022727 GTATTATTATTTCTAGT
1 -TATTATTATTTCTAAT
5022744 TATTATTATT
1 TATTATTATT
5022754 ATATATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 21 0.88
17 3 0.12
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (16 bp):
TATTATTATTTCTAAT
Found at i:5023093 original size:24 final size:22
Alignment explanation
Indices: 5023064--5023118 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
5023054 CATATATATT
5023064 TATTATTATATTATTTACTTTCA
1 TATTATTATATTATTT-CTTTCA
*
5023087 CTATTATT-T-TTATTTCTTTTA
1 -TATTATTATATTATTTCTTTCA
5023108 TCATTATTATA
1 T-ATTATTATA
5023119 CATATATGCG
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
20 1 0.04
21 11 0.41
22 7 0.26
23 1 0.04
24 7 0.26
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (22 bp):
TATTATTATATTATTTCTTTCA
Found at i:5023277 original size:16 final size:16
Alignment explanation
Indices: 5023258--5023318 Score: 50
Period size: 16 Copynumber: 3.6 Consensus size: 16
5023248 GTTTTTTAAA
5023258 ATATTATATTTTTCAT
1 ATATTATATTTTTCAT
* *
5023274 ATATCATGTATTTTTTTAT
1 ATAT--TATA-TTTTTCAT
* *
5023293 ATATTATATTATTCGT
1 ATATTATATTTTTCAT
*
5023309 ATATTTTATT
1 ATATTATATT
5023319 GTATTATATA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
16 18 0.51
17 3 0.09
18 3 0.09
19 11 0.31
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (16 bp):
ATATTATATTTTTCAT
Found at i:5023441 original size:27 final size:25
Alignment explanation
Indices: 5023380--5023470 Score: 78
Period size: 25 Copynumber: 3.6 Consensus size: 25
5023370 CATACTATTC
* * * *
5023380 ATATATTTTAT-TGTTATTTCAAAA
1 ATATATTTTTTATATTATTTCATAT
* *
5023404 ATATA-TATTTATATTATTAGTTATAT
1 ATATATTTTTTATATTATT--TCATAT
*
5023430 ATATATTTTTTATACTATTTCATAT
1 ATATATTTTTTATATTATTTCATAT
*
5023455 ATGTATTTTTTATATT
1 ATATATTTTTTATATT
5023471 GTCCTTATTA
Statistics
Matches: 52, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
23 3 0.06
24 11 0.21
25 19 0.37
26 8 0.15
27 11 0.21
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (25 bp):
ATATATTTTTTATATTATTTCATAT
Found at i:5029689 original size:78 final size:78
Alignment explanation
Indices: 5029560--5029718 Score: 300
Period size: 78 Copynumber: 2.0 Consensus size: 78
5029550 TTCAGAGAAG
5029560 AAGGTCAAAGTTTTTGCGATTTCCATGAAATTGTAGGACACGACATTCAATCGTGTGAGGAATTT
1 AAGGTCAAAGTTTTTGCGATTTCCATGAAATTGTAGGACACGACATTCAATCGTGTGAGGAATTT
*
5029625 AAAAGGTTGCTTC
66 AAAAGGTTACTTC
*
5029638 AAGGTCAAAGTTTTTGCGATTTCCATGGAATTGTAGGACACGACATTCAATCGTGTGAGGAATTT
1 AAGGTCAAAGTTTTTGCGATTTCCATGAAATTGTAGGACACGACATTCAATCGTGTGAGGAATTT
5029703 AAAAGGTTACTTC
66 AAAAGGTTACTTC
5029716 AAG
1 AAG
5029719 ACCGGATGGA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.31
Consensus pattern (78 bp):
AAGGTCAAAGTTTTTGCGATTTCCATGAAATTGTAGGACACGACATTCAATCGTGTGAGGAATTT
AAAAGGTTACTTC
Found at i:5035206 original size:41 final size:42
Alignment explanation
Indices: 5035152--5035231 Score: 126
Period size: 41 Copynumber: 1.9 Consensus size: 42
5035142 ATTATGCTTG
5035152 AAAAAGGAAATCAAGATGAAAACCCGAAAAGGGCATCTTAAAA
1 AAAAAGG-AATCAAGATGAAAACCCGAAAAGGGCATCTTAAAA
* *
5035195 AAAAAGG-ATCAAGGTGAAAACCCGAAAAGGGCGTCTT
1 AAAAAGGAATCAAGATGAAAACCCGAAAAGGGCATCTT
5035232 GATTAACACG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 28 0.80
43 7 0.20
ACGTcount: A:0.50, C:0.15, G:0.23, T:0.12
Consensus pattern (42 bp):
AAAAAGGAATCAAGATGAAAACCCGAAAAGGGCATCTTAAAA
Found at i:5036305 original size:73 final size:72
Alignment explanation
Indices: 5036142--5036352 Score: 228
Period size: 72 Copynumber: 2.8 Consensus size: 72
5036132 TATATTTTTC
* ** * * *
5036142 AAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCTGGACACGCTGAGGTATTTT-AAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGC-GAGGTATTTTCAAATTC
*
5036206 CTACTTTC
65 CTACTTTA
* *
5036214 AAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGGCATGCGAGGTATTTTCAAA-TCC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCGAGGTATTTTCAAATTCC
**
5036278 TGTTTTAAA
66 TACTTT--A
*
5036287 AAAAATCAACTCATATTGCGAGAGAAGTGAGTTGAGCCTCGGGCAACATGCCGAGGTATGTTCAA
1 AAAAATCAACTCATATTGCGAGAG--GTGAGTTGAGCCTCGGG--ACATG-CGAGGTATTTTCAA
5036352 A
61 A
5036353 ATCTATTTTT
Statistics
Matches: 117, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
71 16 0.14
72 43 0.37
73 23 0.20
75 17 0.15
77 4 0.03
78 14 0.12
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCGAGGTATTTTCAAATTCC
TACTTTA
Found at i:5036375 original size:13 final size:14
Alignment explanation
Indices: 5036347--5036381 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
5036337 CCGAGGTATG
5036347 TTCAAAATCTATTT
1 TTCAAAATCTATTT
*
5036361 TTCAAATTCTATTT
1 TTCAAAATCTATTT
5036375 TTCAAAA
1 TTCAAAA
5036382 AGTCAACTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (14 bp):
TTCAAAATCTATTT
Found at i:5036461 original size:14 final size:14
Alignment explanation
Indices: 5036444--5036470 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
5036434 ATGTTCAGAA
5036444 TCTATTTTTCAAAT
1 TCTATTTTTCAAAT
5036458 TCTATTTTTCAAA
1 TCTATTTTTCAAA
5036471 AAGTCAACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.56
Consensus pattern (14 bp):
TCTATTTTTCAAAT
Found at i:5036597 original size:89 final size:90
Alignment explanation
Indices: 5036267--5036718 Score: 614
Period size: 90 Copynumber: 5.1 Consensus size: 90
5036257 ATGCGAGGTA
* * ** *
5036267 TTTTCAAATCCTGTTTTAAAAAAAATCAACTCATATTGCGAGAGAAGTGAGTTGAGCCTCGGGCA
1 TTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGC--GAGAAGTGAGTTGAGCCTCGGGCC
*
5036332 ACATGCCGAGGTATGTTCAAAATCTAT
64 ACATGCCGAGGTATGTTCAAAATCTAG
* *
5036359 TTTTCAAATTCTATTTTTCAAAAAGTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGCCAC
1 TTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCCAC
* *
5036424 ATGCCGAGGTATGTTCAGAATCTAT
66 ATGCCGAGGTATGTTCAAAATCTAG
*
5036449 TTTTCAAATTCTATTTTTCAAAAAGTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCCAC
1 TTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCCAC
5036514 ATGCCGAGGTATGTTCAAAATCT-G
66 ATGCCGAGGTATGTTCAAAATCTAG
* *
5036538 TTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGCGAGAAGTAAGTTGAGCCTCGGG--GC
1 TTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCCAC
* *
5036601 ATGCCGAGGTATTTTCAAATTCT-G
66 ATGCCGAGGTATGTTCAAAATCTAG
* * * * *
5036625 TTTTTAATTTCT-GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCAC
1 TTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCCAC
* * * *
5036688 ACGCTGAGGTATTTTC-AAAT-TAT
66 ATGCCGAGGTATGTTCAAAATCTAG
5036711 TTTTCAAA
1 TTTTCAAA
5036719 AATCAACTCA
Statistics
Matches: 329, Mismatches: 28, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
85 40 0.12
86 14 0.04
87 48 0.15
89 59 0.18
90 134 0.41
92 34 0.10
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33
Consensus pattern (90 bp):
TTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCCAC
ATGCCGAGGTATGTTCAAAATCTAG
Found at i:5036858 original size:163 final size:161
Alignment explanation
Indices: 5036359--5036842 Score: 499
Period size: 179 Copynumber: 2.9 Consensus size: 161
5036349 CAAAATCTAT
* * *
5036359 TTTTCAAATTCTATTTTTCAAAAAGTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGCCAC
1 TTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGCGAGAAGTAAGTTGAGCCTCG-G-GAC
* * * *
5036424 ATGCCGAGGTATGTTCAGAATCTATTTTTCAAATTCTATTTTTCAAAAAGTCAACTCATATTGCG
64 ATGCCGAGGTATTTTCAAAATCTA-TTTTCAAATT-AAGTTTTCAAAAA-TCAACTCATATTGCG
* * * * *
5036489 AGAAGTGAGTTGAGCCTCGGGCCACATGCCGAGGTATGTTCAAAA
126 AGAAGTGAGTTGAGCATCAGGTCACACGCTGA-G---G-T----A
5036534 TCTGTTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGCGAGAAGTAAGTTGAGCCTCGGG
1 ----TTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGCGAGAAGTAAGTTGAGCCTCGGG
* * * * * **
5036599 GCATGCCGAGGTATTTTCAAATTCTGTTTTTAATTTCTGTTTTCAAAAATCAACTCATATTGCGA
62 ACATGCCGAGGTATTTTCAAAATCTATTTTCAAATTAAGTTTTCAAAAATCAACTCATATTGCGA
*
5036664 GAAGTGAGTTGAGCCTCAGGTCACACGCTGAGGTA
127 GAAGTGAGTTGAGCATCAGGTCACACGCTGAGGTA
* * *
5036699 TTTTCAAA-T-TATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTTCA
1 TTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGCGAGAAGTAAGTTGAGCCTCGGG---A
*
5036761 CATGTCGAGGTATTTTCAAAATCTAATTTTCAAATTAAG-TTTCAAAAAAATCAACTCATATTGC
63 CATGCCGAGGTATTTTCAAAATCT-ATTTTCAAATTAAGTTTTC--AAAAATCAACTCATATTGC
*
5036825 GAGAGGTGAGTTGAGCAT
125 GAGAAGTGAGTTGAGCAT
5036843 TGGCTCACGC
Statistics
Matches: 269, Mismatches: 30, Indels: 28
0.82 0.09 0.09
Matches are distributed among these distances:
158 38 0.14
159 8 0.03
160 1 0.00
161 34 0.13
162 9 0.03
163 35 0.13
165 1 0.00
169 1 0.00
170 1 0.00
173 1 0.00
174 43 0.16
175 10 0.04
176 8 0.03
177 21 0.08
178 1 0.00
179 57 0.21
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (161 bp):
TTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGCGAGAAGTAAGTTGAGCCTCGGGACAT
GCCGAGGTATTTTCAAAATCTATTTTCAAATTAAGTTTTCAAAAATCAACTCATATTGCGAGAAG
TGAGTTGAGCATCAGGTCACACGCTGAGGTA
Found at i:5036985 original size:251 final size:247
Alignment explanation
Indices: 5036449--5037012 Score: 650
Period size: 251 Copynumber: 2.3 Consensus size: 247
5036439 CAGAATCTAT
* *
5036449 TTTTCAAATTCTATTTTTCAAAAAGTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCCAC
1 TTTTCAAA-T-TATGTTTCAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCAC
* **
5036514 ATGCCGAGGTATGTTCAAAATCTGTTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGCGA
63 ATGCCGAGGTATGTTCAAAATCTATTTTCAAATTCTAAGTTTCAAAAAATCAACTCATATTGCGA
* * * * ** * *
5036579 GAAGTAAGTTGAGCCTCGGGGCATGCCGAGGTATTTTCAAATTCTGTTTTTAATTTCTGTTTTCA
128 GAAGTAAGTTGAGCATCGGCGCACGCCGAGCTATTACCAAATTCTATTTTTAATTTATGTTTTCA
*
5036644 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACACGCTGAGGTA
193 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTA
* * *
5036699 TTTTCAAATTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTTCACAT
1 TTTTCAAATTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CCACAT
* *
5036764 GTCGAGGTATTTTCAAAATCTAATTTTCAAA-T-TAAGTTTCAAAAAAATCAACTCATATTGCGA
65 GCCGAGGTATGTTCAAAATCT-ATTTTCAAATTCTAAGTTTC-AAAAAATCAACTCATATTGCGA
* * * * * *
5036827 GAGGTGAGTTGAGCATTGGCTCACGCGCTGAGCTA-TACCAATTTCTATTTTTAGTTTATGTTAT
128 GAAGTAAGTTGAGCATCGGCGCACGC-C-GAGCTATTACCAAATTCTATTTTTAATTTATGTT-T
* * * * *
5036891 TTAAAAATTCAATTCATGTTGCGAGAAATGAGTTGAGCCTC-GGCTCACATGTTGAGGTA
190 TCAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG-TCACACGCTGAGGTA
**** * *** *
5036950 TTTTTTGTTTCTGTTTGTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACA
1 TTTTCAAATTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACA
5037013 CTGAGTTATT
Statistics
Matches: 267, Mismatches: 39, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
247 40 0.15
248 79 0.30
249 31 0.12
250 26 0.10
251 91 0.34
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (247 bp):
TTTTCAAATTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCACATG
CCGAGGTATGTTCAAAATCTATTTTCAAATTCTAAGTTTCAAAAAATCAACTCATATTGCGAGAA
GTAAGTTGAGCATCGGCGCACGCCGAGCTATTACCAAATTCTATTTTTAATTTATGTTTTCAAAA
ATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGTCACACGCTGAGGTA
Found at i:5036996 original size:73 final size:73
Alignment explanation
Indices: 5036872--5037110 Score: 250
Period size: 73 Copynumber: 3.2 Consensus size: 73
5036862 TACCAATTTC
* * * * * ** *
5036872 TATTTTTAGTTTATGTTATTTAAAAATTCAATTCATGTTGCGAGAAATGAGTTGAGCCTCGGCTC
1 TATTTTTAATTTCTGTT-TGTAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GC
*
5036937 ACATGTTGAGG
63 ACATGCTGAGG
** *
5036948 TATTTTTTGTTTCTGTTTGT-TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
1 TATTTTTAATTTCTGTTTGTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCAC
*
5037012 A--CTGAGT
65 ATGCTGAGG
* * * **
5037019 TATTTTCAATTCCTGTTTGTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGGC
1 TATTTTTAATTTCTGTTTGT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCAC
5037084 ATGCTGAGG
65 ATGCTGAGG
5037093 TATTTTTAATTTCTGTTT
1 TATTTTTAATTTCTGTTT
5037111 TTTTTATTTT
Statistics
Matches: 136, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
71 20 0.15
72 5 0.04
73 68 0.50
74 26 0.19
75 2 0.01
76 15 0.11
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (73 bp):
TATTTTTAATTTCTGTTTGTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACA
TGCTGAGG
Found at i:5037121 original size:22 final size:23
Alignment explanation
Indices: 5037093--5037145 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
5037083 CATGCTGAGG
*
5037093 TATTTTTAATTTCTGTTTTTTT-
1 TATTTTTAATTTCTATTTTTTTA
* *
5037115 TATTTTTTATTTTTTATTTTTTTA
1 TA-TTTTTAATTTCTATTTTTTTA
5037139 TATTTTT
1 TATTTTT
5037146 CAAAAAAGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 2 0.08
23 22 0.85
24 2 0.08
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (23 bp):
TATTTTTAATTTCTATTTTTTTA
Found at i:5037122 original size:8 final size:8
Alignment explanation
Indices: 5037109--5037145 Score: 51
Period size: 7 Copynumber: 4.9 Consensus size: 8
5037099 TAATTTCTGT
5037109 TTTTTTTA
1 TTTTTTTA
5037117 -TTTTTTA
1 TTTTTTTA
5037124 -TTTTTTA
1 TTTTTTTA
5037131 TTTTTTTA
1 TTTTTTTA
*
5037139 TATTTTT
1 TTTTTTT
5037146 CAAAAAAGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 14 0.52
8 13 0.48
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (8 bp):
TTTTTTTA
Found at i:5037144 original size:7 final size:7
Alignment explanation
Indices: 5037110--5037136 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
5037100 AATTTCTGTT
5037110 TTTTTTA
1 TTTTTTA
5037117 TTTTTTA
1 TTTTTTA
5037124 TTTTTTA
1 TTTTTTA
5037131 TTTTTT
1 TTTTTT
5037137 TATATTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:5040483 original size:144 final size:144
Alignment explanation
Indices: 5039897--5040470 Score: 999
Period size: 144 Copynumber: 4.0 Consensus size: 144
5039887 AAACAACTGG
* * * * *
5039897 CTTGTTGGTCCAATCCCATCTTCTGTCAGCAATTTAACCAATCTTGCCTCGTTG-TACCTTCAAA
1 CTTGTTGGTCCAATACCATCTTCTGTCAGCAACTTAACTAATCTTACCTCGTTGAT-CCTTCAAC
* * * *
5039961 GCAACAAACTTGATGGATCCATTCCAGAAGATAATGGGAGACTAACGAATTTGGTTGAATTGGAT
65 TCAACCAACTTAATGGATCCATTCCAGAAGATATTGGGAGACTAACGAATTTGGTTGAATTGGAT
5040026 CTATCCTCCAATAAT
130 CTATCCTCCAATAAT
*
5040041 CTTGTTGGTCCAATACCATCTTCTGTCAGCAACTTAACTAATCTTACCTCGTTGTTCCTTCAACT
1 CTTGTTGGTCCAATACCATCTTCTGTCAGCAACTTAACTAATCTTACCTCGTTGATCCTTCAACT
*
5040106 CAACCAACTTAATGGATCCATTCCACAAGATATTGGGAGACTAACGAATTTGGTTGAATTGGATC
66 CAACCAACTTAATGGATCCATTCCAGAAGATATTGGGAGACTAACGAATTTGGTTGAATTGGATC
5040171 TATCCTCCAATAAT
131 TATCCTCCAATAAT
5040185 CTTGTTGGTCCAATACCATCTTCTGTCAGCAACTTAACTAATCTTACCTCGTTGATCCTTCAACT
1 CTTGTTGGTCCAATACCATCTTCTGTCAGCAACTTAACTAATCTTACCTCGTTGATCCTTCAACT
5040250 CAACCAACTTAATGGATCCATTCCAGAAGATATTGGGAGACTAACGAATTTGGTTGAATTGGATC
66 CAACCAACTTAATGGATCCATTCCAGAAGATATTGGGAGACTAACGAATTTGGTTGAATTGGATC
*
5040315 TATCCTCCAATAGT
131 TATCCTCCAATAAT
5040329 CTTGTTGGTCCAATACCATCTTCTGTCAGCAACTTAACTAATCTTACCTCGTTGATCCTTCAACT
1 CTTGTTGGTCCAATACCATCTTCTGTCAGCAACTTAACTAATCTTACCTCGTTGATCCTTCAACT
*
5040394 CAACCAACTTAATGGATCCATTCCAGAAGATATTGGGAGATTAACGAATTTGGTT-AATTTGGAT
66 CAACCAACTTAATGGATCCATTCCAGAAGATATTGGGAGACTAACGAATTTGGTTGAA-TTGGAT
5040458 CTATCCTCCAATA
130 CTATCCTCCAATA
5040471 GGCTTTCAGG
Statistics
Matches: 414, Mismatches: 14, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
143 2 0.00
144 411 0.99
145 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.33
Consensus pattern (144 bp):
CTTGTTGGTCCAATACCATCTTCTGTCAGCAACTTAACTAATCTTACCTCGTTGATCCTTCAACT
CAACCAACTTAATGGATCCATTCCAGAAGATATTGGGAGACTAACGAATTTGGTTGAATTGGATC
TATCCTCCAATAAT
Found at i:5045603 original size:17 final size:18
Alignment explanation
Indices: 5045578--5045617 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
5045568 GATATAATTT
*
5045578 AAAAAGAAAAA-ACAAGC
1 AAAATGAAAAAGACAAGC
*
5045595 AAAATGAAAAAGAGAAGC
1 AAAATGAAAAAGACAAGC
5045613 AAAAT
1 AAAAT
5045618 AGAGAATGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.72, C:0.07, G:0.15, T:0.05
Consensus pattern (18 bp):
AAAATGAAAAAGACAAGC
Found at i:5046218 original size:8 final size:8
Alignment explanation
Indices: 5046205--5046229 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
5046195 TAACTAAAAA
5046205 TATTATTT
1 TATTATTT
5046213 TATTATTT
1 TATTATTT
5046221 TATTATTT
1 TATTATTT
5046229 T
1 T
5046230 TTAAATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTATTT
Found at i:5057319 original size:18 final size:18
Alignment explanation
Indices: 5057298--5057340 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
5057288 TTGAAAATAT
5057298 TTTTCTATAAAATTT-TAA
1 TTTT-TATAAAATTTATAA
* *
5057316 TTTTTTTATAATTTATAA
1 TTTTTATAAAATTTATAA
5057334 TTTTTAT
1 TTTTTAT
5057341 CATTTTTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTTATAAAATTTATAA
Found at i:5060445 original size:26 final size:26
Alignment explanation
Indices: 5060409--5060492 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
5060399 CATGAAATTC
5060409 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
5060435 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
5060461 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
5060487 TTATCA
1 TTATCA
5060493 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:5060970 original size:19 final size:19
Alignment explanation
Indices: 5060942--5060993 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
5060932 CCCATTAAGC
*
5060942 CCCCCCAAAAAAAACCTAA
1 CCCCCAAAAAAAAACCTAA
5060961 CCCCCAAAAAAAAACCTAA
1 CCCCCAAAAAAAAACCTAA
5060980 --CCCAAAAAAAAACC
1 CCCCCAAAAAAAAACC
5060994 AAGAAACCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 14 0.44
19 18 0.56
ACGTcount: A:0.58, C:0.38, G:0.00, T:0.04
Consensus pattern (19 bp):
CCCCCAAAAAAAAACCTAA
Found at i:5062027 original size:15 final size:17
Alignment explanation
Indices: 5061999--5062030 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
5061989 TTGTATATAT
5061999 TATATTTATATTATGTA
1 TATATTTATATTATGTA
5062016 TATATTT-T-TTATGTA
1 TATATTTATATTATGTA
5062031 CGTTTCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TATATTTATATTATGTA
Found at i:5062653 original size:18 final size:18
Alignment explanation
Indices: 5062632--5062676 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
5062622 AAAATTCAGG
5062632 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
5062650 TTTC-AAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
5062667 TTT-AAAAATT
1 TTTCAAAAATT
5062677 CTCATTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 22 0.85
18 4 0.15
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (18 bp):
TTTCAAAAATTTTCGTGT
Found at i:5068351 original size:269 final size:269
Alignment explanation
Indices: 5067859--5068391 Score: 744
Period size: 269 Copynumber: 2.0 Consensus size: 269
5067849 GCTCAGAGAC
* * * *
5067859 TCAGGCAATATATGCTGTATCATACGACATGGCTAATTTCAAAGTTGGACCCAATAAAGTACATG
1 TCAGGAAATATATGCTGTATCATACGACATGACTAATTTCAAAGCTGGACCCAATAAAATACATG
* * * *
5067924 ATGGAATCACCCGCACTCTCAGGAAGAATGACACGATGGCAGATCTTACTATCAGAATACGACAT
66 AAGGAATCACCCGCACTCTCAGAAAGAATGACACAATGGCAGATCCTACTATCAGAATACGACAT
* * * *
5067989 CGTCTATGTGAGCCAAAAGTCAATAAAAGGGAGTACAATAGCTGACTTATTAGCAACTCGAACAA
131 CGCCTATGTAAGCCAAAAGTCAATAAAAGGGAGCACAATAGCTGACTTATTAGCAACTCAAACAA
* * ** *
5068054 CGGAGGAATACGAGCCATTGAAATTTGATTTCCCAGATGGAGACTTAATGTGCATTACAGAAAAG
196 CAGAGGAATACGAGCCATTGAAATTTGATTTCCCAAATAAAGACTTAATGTGCATCACAGAAAAG
5068119 GAATGTGAG
261 GAATGTGAG
*
5068128 TCAGGAAATATATGCTGTATCATACGACATGACTAATTTCAAAGCTGGACCCAATAAAATATATG
1 TCAGGAAATATATGCTGTATCATACGACATGACTAATTTCAAAGCTGGACCCAATAAAATACATG
* * * *
5068193 AAGGAATCACCGGCACTCTCAGAAAGAATGGCACAATGGCAGATCCTCCTATCGGAATACGACAT
66 AAGGAATCACCCGCACTCTCAGAAAGAATGACACAATGGCAGATCCTACTATCAGAATACGACAT
* * * * * * * * *
5068258 TGCCTATGTAAGTCAGAAGTCGATAAAAGGGAGCGCAATAGCTGATTTCTTAGCGACTCAAACGA
131 CGCCTATGTAAGCCAAAAGTCAATAAAAGGGAGCACAATAGCTGACTTATTAGCAACTCAAACAA
* * *
5068323 TAGAGGAATATGAGCCCTT-AAGATTTGATTTCCCAAATAAAGACTTAATGTGCATCACAGAAAA
196 CAGAGGAATACGAGCCATTGAA-ATTTGATTTCCCAAATAAAGACTTAATGTGCATCACAGAAAA
5068387 GGAAT
260 GGAAT
5068392 CCTAGTCATC
Statistics
Matches: 229, Mismatches: 34, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
268 2 0.01
269 227 0.99
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (269 bp):
TCAGGAAATATATGCTGTATCATACGACATGACTAATTTCAAAGCTGGACCCAATAAAATACATG
AAGGAATCACCCGCACTCTCAGAAAGAATGACACAATGGCAGATCCTACTATCAGAATACGACAT
CGCCTATGTAAGCCAAAAGTCAATAAAAGGGAGCACAATAGCTGACTTATTAGCAACTCAAACAA
CAGAGGAATACGAGCCATTGAAATTTGATTTCCCAAATAAAGACTTAATGTGCATCACAGAAAAG
GAATGTGAG
Found at i:5071347 original size:125 final size:124
Alignment explanation
Indices: 5071114--5071355 Score: 304
Period size: 116 Copynumber: 2.0 Consensus size: 124
5071104 CGTTGAGGTA
* * ** * *
5071114 TTTTTAATTGTTGTTTTCAAAATCAACTCATATTGCGAGAAGTAAGTTGAGCCTCGGGGCACGCT
1 TTTTT-ATTGTTGTTTTCAAAATCAACTCATATTGCTAGAGGTAAGTCAAGCCTCAGGTCACGCT
*
5071179 GAGGTATTTTT-A-------GTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
65 GAGGTATTTTTAATTTTTGTGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
5071230 TTTTTATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTCAAGCCTCAGGTCACGCT
1 TTTTTATTGTTG-TTTTCAAAATCAACTCATATTGCTAGAGGTAAGTCAAGCCTCAGGTCACGCT
* *
5071295 GAGGTATTTTTAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTTAATTTTTGTGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
5071355 T
1 T
5071356 CAGGACACGA
Statistics
Matches: 105, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
115 6 0.06
116 61 0.58
117 1 0.01
124 9 0.09
125 28 0.27
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.39
Consensus pattern (124 bp):
TTTTTATTGTTGTTTTCAAAATCAACTCATATTGCTAGAGGTAAGTCAAGCCTCAGGTCACGCTG
AGGTATTTTTAATTTTTGTGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:5071355 original size:72 final size:71
Alignment explanation
Indices: 5071230--5071424 Score: 239
Period size: 72 Copynumber: 2.7 Consensus size: 71
5071220 GAGTTAAGCC
* ** * *
5071230 TTTTT-ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTCAAGCCTCAGGTCACGC
1 TTTTTAATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
5071294 TGAGGTA
65 TGAGGTA
**
5071301 TTTTTAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
1 TTTTTAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
5071366 TGAGGTA
65 TGAGGTA
* * * * *
5071373 ATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TTTTTAATTTTTGTTT-TTAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
5071425 ACCTTTTAAT
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
71 7 0.07
72 68 0.64
73 31 0.29
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (71 bp):
TTTTTAATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGAT
GAGGTA
Found at i:5071523 original size:252 final size:252
Alignment explanation
Indices: 5071202--5071734 Score: 1021
Period size: 252 Copynumber: 2.1 Consensus size: 252
5071192 TTTTAAATTG
*
5071202 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTGCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTACT
*
5071267 AGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATTTTTGTGTTTTAATTTCAACTCA
66 AGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
5071332 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA
131 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA
5071397 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCA
196 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCA
5071454 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTACT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTACT
*
5071519 AGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
66 AGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
5071584 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA
131 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA
5071649 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCA
196 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCA
* *
5071706 ACTCATATTGCGAGAAGTGAGTTGAGCCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCT
5071735 CGGGGCACGC
Statistics
Matches: 276, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
252 276 1.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.37
Consensus pattern (252 bp):
ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTACT
AGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA
TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCA
Found at i:5071535 original size:53 final size:53
Alignment explanation
Indices: 5071378--5071535 Score: 199
Period size: 54 Copynumber: 2.9 Consensus size: 53
5071368 AGGTAATTTC
* * * *
5071378 AATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTT
1 AATTTTTGTTTTTCAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
** *
5071432 AATTTCTACTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTT
1 AATTT-TTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
* * * *
5071486 TATTTTTGTTTTTCAAAATCAACTCATATTACTAGAGGTGAGTCGAGCCT
1 AATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
5071536 CAGGTCACGC
Statistics
Matches: 89, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
53 39 0.44
54 43 0.48
55 7 0.08
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (53 bp):
AATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
Found at i:5071676 original size:73 final size:71
Alignment explanation
Indices: 5071487--5071676 Score: 245
Period size: 72 Copynumber: 2.6 Consensus size: 71
5071477 AAGCCTTTTT
* * * * *
5071487 ATTTTTGTTTTTCAAAATCAACTCATATTACTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGT
1 ATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT
*
5071552 ATTTTCA
65 AATTTCA
* **
5071559 ATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT
1 ATTTTTGT-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT
5071624 AATTTCA
65 AATTTCA
* *
5071631 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 ATTTTTGTTT-TCAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
5071677 ACCTTTTAAT
Statistics
Matches: 101, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
71 3 0.03
72 71 0.70
73 27 0.27
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (71 bp):
ATTTTTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTA
ATTTCA
Found at i:5071816 original size:315 final size:315
Alignment explanation
Indices: 5071454--5072620 Score: 2178
Period size: 315 Copynumber: 3.7 Consensus size: 315
5071444 TTCAAAATCA
5071454 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTACT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTACT
5071519 AGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
66 AGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
5071584 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA
131 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA
5071649 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATAT
196 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATAT
5071714 TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
261 TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
*
5071769 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTGCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTACT
*
5071834 AGAGGTGAGTCGAGCCTCAGGTCGCGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
66 AGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
* *
5071899 TATTGCGAGAAGTGAGTTGAGCCTCAGGAAACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA
131 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA
5071964 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATAT
196 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATAT
5072029 TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTA--TTTAGTTTTTAAATTG
261 TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG-TTTTAAATTG
5072083 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTACT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTACT
*
5072148 AGAGGTGAGTCGAGCCTCAGGTCGCGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
66 AGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
5072213 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA
131 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA
5072278 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATAT
196 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATAT
5072343 TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
261 TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
*
5072398 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTGCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTACT
* *
5072463 AGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTTTTGTTTTAATTTCAACTCA
66 AGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
* * *
5072528 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATTTCT-ATTGTCAAAAA
131 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA
* *
5072592 TTCAACTCATATTGCAAGAGGTGAGTTGA
196 -TCAACTCATATTGCGAGAGGTGGGTTGA
5072621 GCCTCAGGAC
Statistics
Matches: 832, Mismatches: 16, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
313 5 0.01
314 314 0.38
315 508 0.61
316 5 0.01
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (315 bp):
ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTACT
AGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAA
TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATAT
TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
Found at i:5071862 original size:116 final size:117
Alignment explanation
Indices: 5071652--5071871 Score: 327
Period size: 116 Copynumber: 1.9 Consensus size: 117
5071642 TCAAGAATCA
*
5071652 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGC
* *
5071717 GAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
66 GAGAAGTGAGTCGAGCCTCAGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
* **
5071769 ACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTTATTT-TTGTTTTTCAAAATCAACTCATATTG
1 ACTCATATTGCGAGAGGTGAGTTGAA-CCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTG
* * * *
5071832 CTAGAGGTGAGTCGAGCCTCAGGTCGCGCTGAGGTATTTT
65 CGAGAAGTGAGTCGAGCCTCAGGGCACGCTGAGGTATTTT
5071872 CAATTTTTGT
Statistics
Matches: 92, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
116 60 0.65
117 32 0.35
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (117 bp):
ACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGC
GAGAAGTGAGTCGAGCCTCAGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
Found at i:5071921 original size:72 final size:71
Alignment explanation
Indices: 5071802--5071991 Score: 227
Period size: 72 Copynumber: 2.6 Consensus size: 71
5071792 AAGCCTTTTT
* * *** *
5071802 ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCGCGCTGAGGT
1 ATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAAACGATGAGGT
*
5071867 ATTTTCA
65 AATTTCA
** *
5071874 ATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGAAACGATGAGGT
1 ATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAAACGATGAGGT
5071939 AATTTCA
65 AATTTCA
* * *
5071946 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 ATTTTTGTTT-TTAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
5071992 ACCTTTTAAT
Statistics
Matches: 99, Mismatches: 16, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
71 2 0.02
72 67 0.68
73 30 0.30
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (71 bp):
ATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAAACGATGAGGTA
ATTTCA
Found at i:5072176 original size:115 final size:116
Alignment explanation
Indices: 5071967--5072184 Score: 314
Period size: 115 Copynumber: 1.9 Consensus size: 116
5071957 TCAAGAATCA
* *
5071967 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTAC
* *
5072032 GAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTAGTTTTTAAATTG
66 GAGAAGTGAGTCGAGCCTCAGGGCACGCTGAGGTATTTAGTTTTTAAATTG
* **
5072083 ACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTTATTT-TTGTTTTTCAAAATCAACTCATATTA
1 ACTCATATTGCGAGAGGTGAGTTGAA-CCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTA
* * * *
5072146 CTAGAGGTGAGTCGAGCCTCAGGTCGCGCTGAGGTATTT
65 CGAGAAGTGAGTCGAGCCTCAGGGCACGCTGAGGTATTT
5072185 TCAATTTTTG
Statistics
Matches: 90, Mismatches: 11, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
115 58 0.64
116 32 0.36
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (116 bp):
ACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTAC
GAGAAGTGAGTCGAGCCTCAGGGCACGCTGAGGTATTTAGTTTTTAAATTG
Found at i:5072305 original size:73 final size:71
Alignment explanation
Indices: 5072116--5072305 Score: 236
Period size: 72 Copynumber: 2.6 Consensus size: 71
5072106 AAGCCTTTTT
* * * * * *
5072116 ATTTTTGTTTTTCAAAATCAACTCATATTACTAGAGGTGAGTCGAGCCTCAGGTCGCGCTGAGGT
1 ATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT
*
5072181 ATTTTCA
65 AATTTCA
* **
5072188 ATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT
1 ATTTTTGT-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGT
5072253 AATTTCA
65 AATTTCA
* *
5072260 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 ATTTTTGTTT-TCAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
5072306 ACCTTTTAAT
Statistics
Matches: 100, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
71 3 0.03
72 70 0.70
73 27 0.27
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (71 bp):
ATTTTTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTA
ATTTCA
Found at i:5072489 original size:116 final size:117
Alignment explanation
Indices: 5072281--5072500 Score: 327
Period size: 116 Copynumber: 1.9 Consensus size: 117
5072271 TCAAGAATCA
*
5072281 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGC
* * *
5072346 GAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
66 GAGAAGTGAGTCGAACCTCAGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
* **
5072398 ACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTTATTT-TTGTTTTTCAAAATCAACTCATATTG
1 ACTCATATTGCGAGAGGTGAGTTGAA-CCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTG
* * *
5072461 CTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTT
65 CGAGAAGTGAGTCGAACCTCAGGGCACGCTGAGGTATTTT
5072501 CAATTTTTTT
Statistics
Matches: 92, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
116 60 0.65
117 32 0.35
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.36
Consensus pattern (117 bp):
ACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGC
GAGAAGTGAGTCGAACCTCAGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
Found at i:5072711 original size:74 final size:74
Alignment explanation
Indices: 5072444--5073682 Score: 1157
Period size: 74 Copynumber: 16.5 Consensus size: 74
5072434 TTTGTTTTTC
* * * * *
5072444 AAAATCAACTCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA--TTT
*
5072509 TTGTTTT----
64 CTGTTTTCAAA
** *
5072516 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* *
5072581 ATTGTC-AA
66 GTTTTCAAA
* *
5072589 AAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
5072654 GTTGTCAAA
66 GTTTTCAAA
* ** * * * *
5072663 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
5072728 GTCTTTC-AA
66 GT-TTTCAAA
*
5072737 AAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
5072802 GTTGTT-AAA
66 GTT-TTCAAA
* ** *
5072811 ATAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 A-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
*
5072876 TGTTTTAAAA
65 TGTTTTCAAA
** * *
5072886 AAAATCAACTCATATTGCGAGAAATGAATTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
5072951 GTTTTC--A
66 GTTTTCAAA
* ** * * * *
5072958 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
5073023 ATTTTTCAAA
66 -GTTTTCAAA
* *
5073033 AAAATTCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
*
5073098 TGTTGTCAAA
65 TGTTTTCAAA
** * * * * *
5073108 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGTTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
5073173 GTCTTTC-AA
66 GT-TTTCAAA
* * * *
5073182 AAAATCAACTCATACTACGAGAGGTAAGTTGAGCCTCAAGG-CACGTTGAGGTAATTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTAATTTCAATTTC
5073246 TGCTTTT-AAA
65 TG-TTTTCAAA
** ** * * *** * * * * ** *
5073256 TTTATATTTTTCAA-AAAAATTTAACTCGTATTCCGAGAGGTGAG-TTGAGCCTCAGGAC--ACG
1 ---A-A--AATCAACTCATA-TT---GCG-A-GAGGTGAGTTGAGCCTCAG-GACACG-CTGA-G
* * ** * * *
5073317 CTGAGGTAATTTCAATTTCTGTTGTAAAA
51 GTAATTTCA-----ATTTCTGTTTTCAAA
** * * * *
5073346 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
5073411 GTCTTTCAAA
66 GT-TTTCAAA
* * * *
5073421 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGATACACTGAGGTAATTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
5073486 GTTTTC--A
66 GTTTTCAAA
* * ** * * *
5073493 AAATTCCACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
5073558 GTTTTCAAA
66 GTTTTCAAA
* * *
5073567 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
5073631 TCTGTCTTTCAAA
63 TCTGT-TTTCAAA
*
5073644 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
5073683 ATCACACACT
Statistics
Matches: 960, Mismatches: 156, Indels: 96
0.79 0.13 0.08
Matches are distributed among these distances:
70 7 0.01
72 172 0.18
73 74 0.08
74 356 0.37
75 154 0.16
76 79 0.08
77 43 0.04
78 3 0.00
79 16 0.02
80 9 0.01
81 2 0.00
83 4 0.00
84 9 0.01
85 17 0.02
86 1 0.00
87 1 0.00
89 3 0.00
90 10 0.01
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTCAAA
Found at i:5072968 original size:221 final size:223
Alignment explanation
Indices: 5072444--5073682 Score: 1559
Period size: 221 Copynumber: 5.5 Consensus size: 223
5072434 TTTGTTTTTC
* ** * * * * *
5072444 AAAATCAACTCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTT
* * * **
5072509 TTGTTT--TAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATT
66 GTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATT
* * * *
5072572 TCAATTTCTATTGTC-AAA-AATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGC
131 TCAATTTCTGTTTTCAAAATAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
5072635 TGAGGTAATTTCAATTTCTGTTGTCAAA
196 TGAGGTAATTTCAATTTCTGTTGTCAAA
*
5072663 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTT
* *
5072728 GTCTTTCAAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
66 GTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATT
* ** *
5072793 TCAATTTCTGTTGTT-AAAATAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGACACG
131 TCAATTTCTGTT-TTCAAAATAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* *
5072857 CTGAGGTAATTTCAATTTCTGTTTTAAAA
195 CTGAGGTAATTTCAATTTCTGTTGTCAAA
* ** * * *
5072886 AAAATCAACTCATATTGCGAGAAATGAATTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTT
* ** * *
5072951 GT-TTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
66 GTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATT
* * *
5073014 TCAATTTATATTTTTCAAAA-AAATTCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
131 TCAATTTCT-GTTTTCAAAATAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
5073078 GCTGAGGTAATTTCAATTTTTGTTGTCAAA
194 GCTGAGGTAATTTCAATTTCTGTTGTCAAA
*
5073108 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGTTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTT
* * *
5073173 GTCTTTCAAAAAATCAACTCATACTACGAGAGGTAAGTTGAGCCTCAAGG-CACGTTGAGGTAAT
66 GTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGTTGAGGTAAT
* * * *
5073237 TTCAATTTCTGCTTTTAAATTTATATTTTTCAAAAAAATTTAACTCGTATTCCGAGAGGTGAGTT
130 TTCAATTTCTG-TTTTCAA---A-A----T-----AAA-TCAACTCATATTGCGAGAGGTGAGTT
*
5073302 GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTAAAA
180 GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAA
5073346 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTT
* * **
5073411 GTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGATACACTGAGGTAAT
66 GTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAAT
* * ** *
5073476 TTCAATTTTTGTTTTCAAAAT---TCCACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
130 TTCAATTTCTGTTTTCAAAATAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* * *
5073538 TTGAGGTATTTTCAATTTCTGTTTTCAAA
195 CTGAGGTAATTTCAATTTCTGTTGTCAAA
* ** *
5073567 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACATGCTGAGGTATTTTCAATT
* *
5073631 TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
63 TTTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
5073683 ATCACACACT
Statistics
Matches: 887, Mismatches: 102, Indels: 58
0.85 0.10 0.06
Matches are distributed among these distances:
219 60 0.07
220 1 0.00
221 219 0.25
222 136 0.15
223 200 0.23
224 60 0.07
225 2 0.00
227 1 0.00
228 1 0.00
230 1 0.00
234 1 0.00
235 1 0.00
238 147 0.17
239 57 0.06
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (223 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTT
GTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATT
TCAATTTCTGTTTTCAAAATAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTAATTTCAATTTCTGTTGTCAAA
Found at i:5073406 original size:164 final size:156
Alignment explanation
Indices: 5073103--5073677 Score: 551
Period size: 164 Copynumber: 3.7 Consensus size: 156
5073093 ATTTTTGTTG
** * * * *
5073103 TCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGTTATTTTCAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
* * * ** * *
5073168 TTTTTGTCTTTCAAAAAATCAACTCATACTACGAGAGGTAAGTTGAGCCTCAAGGCACGTTGAGG
66 TTTTTG--TTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* *
5073233 TAATTTCAATTTCTGCTTTTAAATTTATATTTT
129 TATTTTCAATTTCTG-TTTT---TTT-TATCTT
* * *
5073266 TCAAAAAAATTTAACTCGTATTCCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
* * *
5073331 ATTTCTGTTGTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAG
65 ATTTTTGTT-T-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
5073396 GTATTTTCAA---------TTTTTGTCTT
128 GTATTTTCAATTTCTGTTTTTTTTATCTT
* * *
5073416 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGATACACTGAGGTAATTTCAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
** * *
5073481 TTTTTGTTTTCAAAATTCCACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
66 TTTTTGTTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
5073546 TTTTCAATTTCTG---------T-TT
131 TTTTCAATTTCTGTTTTTTTTATCTT
* * *
5073562 TCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTT
* **
5073626 CAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
63 CAATTT-T-TGTTT-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
5073678 TTCAGATCAC
Statistics
Matches: 350, Mismatches: 47, Indels: 42
0.80 0.11 0.10
Matches are distributed among these distances:
145 2 0.01
146 43 0.12
147 58 0.17
148 20 0.06
149 58 0.17
150 17 0.05
151 34 0.10
154 1 0.00
162 2 0.01
163 10 0.03
164 105 0.30
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (156 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTTTGTTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
TTTTCAATTTCTGTTTTTTTTATCTT
Found at i:5073619 original size:535 final size:517
Alignment explanation
Indices: 5072431--5073677 Score: 1639
Period size: 535 Copynumber: 2.4 Consensus size: 517
5072421 AAGCCTTTTT
* ** * * * * *
5072431 ATTTTTGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGG
1 ATTTTTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* **
5072495 TATTTTCAATTTTTTTGTTTT----AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
65 TATTTTCAA--TTTATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * * *
5072556 ACACGTTGAGGTAATTTCAATTTCTATTGTC-AAAAATTCAACTCATATTGCAAGAGGTGAGTTG
128 ACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * *
5072620 AGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCATATTGCGAGA
193 AGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCATACTACGAGA
* * * *
5072685 AATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAATCAACTCAT
258 AATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTATATCTTTCAAAAAATCAACTCAT
* *
5072750 ACTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAATAA
323 ACTCCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAA
**
5072815 ATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTT
388 ATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
*
5072880 TTAAAAAAAATCAACTCATATTGCGAGAAATGAATTGAGCCTCGGGACACGCTGAGGTAATTTCA
453 TTAAAAAAAATCAACTCATATTGCGAGAAATGAATTGAGCCTCGGGACACACTGAGGTAATTTCA
*
5072945 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTTTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
5073010 ATTTTCAATTTATATTTTTCAAAAAAATTCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
66 ATTTTCAATTTAT-GTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
* **
5073075 CACGCTGAGGTAATTTCAATTTTTGTTGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGA
129 CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * * *
5073140 GCCTCAAGACATGCTGAGTTATTTTCAATTTTTGTCTTTCAAAAAA-TCAACTCATACTACGAGA
194 GCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT-TGTCAAAAAATTCAACTCATACTACGAGA
** * * *
5073204 GGTAAGTTGAGCCTCAAGGCACGTTGAGGTAATTTCAATTTCTGCTTTTAAATTTATATTTTTCA
258 AATAAGTTGAGCCTCAAGACACGCTGAGG-----T--ATTT-T-C-----AATTTATATCTTTC-
* * *
5073269 AAAAAATTTAACTCGTATTCCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
308 AAAAAA-TCAACTCATACTCCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* *
5073334 TCTGTTG-TAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGT
372 TCTGTTGTTAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
* * * ** * *
5073398 ATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAT
437 AATTTCAATTTCTGT-TTTAAAAAAAATCAACTCATATTGCGAGAAATGAATTGAGCCTCGGGAC
5073463 ACACTGAGGTAATTTCA
501 ACACTGAGGTAATTTCA
*
5073480 ATTTTTGTTTTCAAAATTCCACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTTTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
5073545 ATTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTC
66 ATTTTCAATTTATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---
* * *
5073609 ACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
128 ACACGCTGAGGTAATTTCAATTTCTGT-TGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
5073674 GAGC
192 GAGC
5073678 TTCAGATCAC
Statistics
Matches: 636, Mismatches: 67, Indels: 38
0.86 0.09 0.05
Matches are distributed among these distances:
512 4 0.01
513 13 0.02
514 54 0.08
517 2 0.00
518 63 0.10
519 99 0.16
520 9 0.01
524 1 0.00
526 4 0.01
527 1 0.00
528 1 0.00
532 2 0.00
533 42 0.07
534 83 0.13
535 220 0.35
536 38 0.06
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (517 bp):
ATTTTTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
ATTTTCAATTTATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATTCAACTCATACTACGAGAAAT
AAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTATATCTTTCAAAAAATCAACTCATACT
CCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAAATC
AACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTA
AAAAAAATCAACTCATATTGCGAGAAATGAATTGAGCCTCGGGACACACTGAGGTAATTTCA
Found at i:5074229 original size:16 final size:16
Alignment explanation
Indices: 5074208--5074242 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
5074198 AAGCTACAAG
5074208 GCGTATATCATAAGAT
1 GCGTATATCATAAGAT
5074224 GCGTATATCATAAGAT
1 GCGTATATCATAAGAT
5074240 GCG
1 GCG
5074243 GTGGACTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (16 bp):
GCGTATATCATAAGAT
Found at i:5074555 original size:17 final size:18
Alignment explanation
Indices: 5074529--5074579 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
5074519 CATTAAGCCC
5074529 CCCCCAAAAAAAACCTAA
1 CCCCCAAAAAAAACCTAA
5074547 CCCCCAAAAAAAACCTAA
1 CCCCCAAAAAAAACCTAA
**
5074565 CCCAAAAAAAAAACC
1 CCCCCAAAAAAAACC
5074580 AAGAAACCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.59, C:0.37, G:0.00, T:0.04
Consensus pattern (18 bp):
CCCCCAAAAAAAACCTAA
Found at i:5075598 original size:15 final size:17
Alignment explanation
Indices: 5075570--5075601 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
5075560 TTGTATATAT
5075570 TATATTTATATTATGTA
1 TATATTTATATTATGTA
5075587 TATATTT-T-TTATGTA
1 TATATTTATATTATGTA
5075602 CGTTTCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TATATTTATATTATGTA
Found at i:5076226 original size:18 final size:18
Alignment explanation
Indices: 5076205--5076249 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
5076195 AAATTTCAGG
5076205 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
5076223 TTTC-AAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
5076240 TTT-AAAAATT
1 TTTCAAAAATT
5076250 CTCATTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 22 0.85
18 4 0.15
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (18 bp):
TTTCAAAAATTTTCGTGT
Found at i:5083216 original size:143 final size:144
Alignment explanation
Indices: 5082893--5083482 Score: 1110
Period size: 144 Copynumber: 4.1 Consensus size: 144
5082883 TTCTTTTGGG
* *
5082893 ATAGAACCTTTTAATAGATTAGAACCAAGGCTTAAGTACTGCATCTTTGATAAACTACCAATACA
1 ATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGATAAACTACCAATACA
5082958 AGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATCCAGTTAAATTTGCTAGATTAC
66 AGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATCCAGTTAAATTTGCTAGATTAC
5083023 AAATTTCTTGGGGA
131 AAATTTCTTGGGGA
*
5083037 ATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGATAAACTGCCAATACA
1 ATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGATAAACTACCAATACA
5083102 AGAAGGGATTGAACCACTCAATTTGTTTT-GGAGAGGTACAATCCAGTTAAATTTGCTAGATTAC
66 AGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATCCAGTTAAATTTGCTAGATTAC
5083166 AAATTTCTTGGGGA
131 AAATTTCTTGGGGA
*
5083180 ATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGATAAACTGCCAATACA
1 ATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGATAAACTACCAATACA
5083245 AGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATCCAGTTAAATTTGCTAGATTAC
66 AGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATCCAGTTAAATTTGCTAGATTAC
5083310 AAATTTCTTGGGGA
131 AAATTTCTTGGGGA
*
5083324 ATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTACTGCATCTTTGATAAACTACCAATACA
1 ATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGATAAACTACCAATACA
* *
5083389 AGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATACAGTTAAATTTGCTACATTAC
66 AGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATCCAGTTAAATTTGCTAGATTAC
5083454 AAATTTCTTGGGGA
131 AAATTTCTTGGGGA
5083468 ATAGGACCTTTTAAT
1 ATAGGACCTTTTAAT
5083483 TTGTTTTGGG
Statistics
Matches: 438, Mismatches: 7, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
143 143 0.33
144 295 0.67
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (144 bp):
ATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGATAAACTACCAATACA
AGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATCCAGTTAAATTTGCTAGATTAC
AAATTTCTTGGGGA
Found at i:5083397 original size:287 final size:288
Alignment explanation
Indices: 5082893--5083482 Score: 1110
Period size: 287 Copynumber: 2.1 Consensus size: 288
5082883 TTCTTTTGGG
* *
5082893 ATAGAACCTTTTAATAGATTAGAACCAAGGCTTAAGTACTGCATCTTTGATAAACTACCAATACA
1 ATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGATAAACTACCAATACA
5082958 AGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATCCAGTTAAATTTGCTAGATTAC
66 AGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATCCAGTTAAATTTGCTAGATTAC
5083023 AAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGAT
131 AAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGAT
* *
5083088 AAACTGCCAATACAAGAAGGGATTGAACCACTCAATTTGTTTT-GGAGAGGTACAATCCAGTTAA
196 AAACTACCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATACAGTTAA
*
5083152 ATTTGCTAGATTACAAATTTCTTGGGGA
261 ATTTGCTACATTACAAATTTCTTGGGGA
*
5083180 ATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGATAAACTGCCAATACA
1 ATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGATAAACTACCAATACA
5083245 AGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATCCAGTTAAATTTGCTAGATTAC
66 AGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATCCAGTTAAATTTGCTAGATTAC
*
5083310 AAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTACTGCATCTTTGAT
131 AAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGAT
5083375 AAACTACCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATACAGTTAA
196 AAACTACCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATACAGTTAA
5083440 ATTTGCTACATTACAAATTTCTTGGGGA
261 ATTTGCTACATTACAAATTTCTTGGGGA
5083468 ATAGGACCTTTTAAT
1 ATAGGACCTTTTAAT
5083483 TTGTTTTGGG
Statistics
Matches: 295, Mismatches: 7, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
287 233 0.79
288 62 0.21
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (288 bp):
ATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGATAAACTACCAATACA
AGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATCCAGTTAAATTTGCTAGATTAC
AAATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGGACTGCATCTTTGAT
AAACTACCAATACAAGAAGGGATTGAACCACTCAATTTGTTTTGGGAGAGGTACAATACAGTTAA
ATTTGCTACATTACAAATTTCTTGGGGA
Found at i:5083525 original size:72 final size:72
Alignment explanation
Indices: 5083408--5083549 Score: 266
Period size: 72 Copynumber: 2.0 Consensus size: 72
5083398 TGAACCACTC
5083408 AATTTGTTTTGGGAGAGGTACAATACAGTTAAATTTGCTACATTACAAATTTCTTGGGGAATAGG
1 AATTTGTTTTGGGAGAGGTACAATACAGTTAAATTTGCTACATTACAAATTTCTTGGGGAATAGG
5083473 ACCTTTT
66 ACCTTTT
* *
5083480 AATTTGTTTTGGGAGAGGTACAATCCAGTTAAATTTGCTAGATTACAAATTTCTTGGGGAATAGG
1 AATTTGTTTTGGGAGAGGTACAATACAGTTAAATTTGCTACATTACAAATTTCTTGGGGAATAGG
5083545 ACCTT
66 ACCTT
5083550 GAAGTTGGTT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (72 bp):
AATTTGTTTTGGGAGAGGTACAATACAGTTAAATTTGCTACATTACAAATTTCTTGGGGAATAGG
ACCTTTT
Found at i:5084199 original size:15 final size:15
Alignment explanation
Indices: 5084157--5084263 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
5084147 CCAATATCTC
*
5084157 GATACCCATATCTTT
1 GATACCCATATATTT
**
5084172 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
5084187 GATACCCATATATTT
1 GATACCCATATATTT
**
5084202 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
*
5084217 GATACCCATATCTTT
1 GATACCCATATATTT
***
5084232 G--ACTTTTATTATTT
1 GATACCCATA-TATTT
*
5084246 GATACCCATATCTTT
1 GATACCCATATATTT
5084261 GAT
1 GAT
5084264 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 18, Indels: 14
0.68 0.18 0.14
Matches are distributed among these distances:
13 4 0.06
14 13 0.19
15 38 0.57
16 12 0.18
ACGTcount: A:0.27, C:0.21, G:0.07, T:0.45
Consensus pattern (15 bp):
GATACCCATATATTT
Found at i:5084254 original size:29 final size:30
Alignment explanation
Indices: 5084147--5084269 Score: 185
Period size: 30 Copynumber: 4.1 Consensus size: 30
5084137 TTTTATTATG
*
5084147 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
*
5084178 CCAATATTTGATACCCATATATTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
5084208 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
5084238 -TATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
5084267 CCA
1 CCA
5084270 TAAATATGGA
Statistics
Matches: 84, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
29 26 0.31
30 51 0.61
31 7 0.08
ACGTcount: A:0.27, C:0.23, G:0.07, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:5084262 original size:59 final size:61
Alignment explanation
Indices: 5084147--5084269 Score: 187
Period size: 59 Copynumber: 2.0 Consensus size: 61
5084137 TTTTATTATG
5084147 CCAATATCTCGATACCCATATCTTTGACTTTCCAATATTTGATACCCATATATTTGACTTT
1 CCAATATCTCGATACCCATATCTTTGACTTTCCAATATTTGATACCCATATATTTGACTTT
* * * * *
5084208 CCAATAT-TTGATACCCATATCTTTGACTTT-TATTATTTGATACCCATATCTTTGATTTT
1 CCAATATCTCGATACCCATATCTTTGACTTTCCAATATTTGATACCCATATATTTGACTTT
5084267 CCA
1 CCA
5084270 TAAATATGGA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 28 0.49
60 22 0.39
61 7 0.12
ACGTcount: A:0.27, C:0.23, G:0.07, T:0.44
Consensus pattern (61 bp):
CCAATATCTCGATACCCATATCTTTGACTTTCCAATATTTGATACCCATATATTTGACTTT
Found at i:5088884 original size:30 final size:30
Alignment explanation
Indices: 5088838--5088931 Score: 152
Period size: 30 Copynumber: 3.1 Consensus size: 30
5088828 TTTTATTATG
*
5088838 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
5088869 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
5088899 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
5088929 CCA
1 CCA
5088932 TAAATATGGA
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
30 53 0.88
31 7 0.12
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:5088893 original size:15 final size:15
Alignment explanation
Indices: 5088848--5088925 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
5088838 CCAATATCTC
5088848 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
5088863 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
5088878 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
5088893 GACTTTCCAT-TATTT
1 GA-TACCCATATCTTT
5088908 GATACCCATATCTTT
1 GATACCCATATCTTT
5088923 GAT
1 GAT
5088926 TTTCCATAAA
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 9 0.19
15 29 0.62
16 9 0.19
ACGTcount: A:0.26, C:0.23, G:0.08, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:5091208 original size:10 final size:10
Alignment explanation
Indices: 5091193--5091266 Score: 60
Period size: 10 Copynumber: 7.3 Consensus size: 10
5091183 TTAAAAATGT
5091193 AAAAATTATA
1 AAAAATTATA
5091203 AAAAATTAT-
1 AAAAATTATA
*
5091212 AAAAATTATT
1 AAAAATTATA
*
5091222 GAAAATATATTA
1 AAAAAT-TA-TA
* * *
5091234 ATAATTTTTA
1 AAAAATTATA
* *
5091244 AAAAGTTCTA
1 AAAAATTATA
5091254 AAAAATTATA
1 AAAAATTATA
5091264 AAA
1 AAA
5091267 TATAACTTGA
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
9 9 0.18
10 34 0.68
11 3 0.06
12 4 0.08
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (10 bp):
AAAAATTATA
Found at i:5092217 original size:24 final size:25
Alignment explanation
Indices: 5092174--5092228 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 25
5092164 AATTTTTTTC
*
5092174 AAATTGAGTCGAGTGAAATC-A-TG
1 AAATTGAGTCGAGCGAAATCGAGTG
5092197 AAATTCGAGTCGAGACG-AATCGAGTG
1 AAATT-GAGTCGAG-CGAAATCGAGTG
5092223 AAATTG
1 AAATTG
5092229 TTTGAGTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
23 5 0.19
24 12 0.44
25 3 0.11
26 7 0.26
ACGTcount: A:0.38, C:0.11, G:0.27, T:0.24
Consensus pattern (25 bp):
AAATTGAGTCGAGCGAAATCGAGTG
Found at i:5094710 original size:21 final size:21
Alignment explanation
Indices: 5094669--5094710 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
5094659 TCTAATATAA
* *
5094669 ATATATATATCATATAGGTTT
1 ATATACATATCATACAGGTTT
*
5094690 ATATACATATCATACATGTTT
1 ATATACATATCATACAGGTTT
5094711 CTTTATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (21 bp):
ATATACATATCATACAGGTTT
Found at i:5095028 original size:20 final size:19
Alignment explanation
Indices: 5094964--5095032 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 19
5094954 ATATCTCTTT
*
5094964 TTATATTGTATTTTTATATA
1 TTATATTATATTTTTA-ATA
* *
5094984 TCATGCA-TATATTTTGAATA
1 TTAT--ATTATATTTTTAATA
*
5095004 CTATATTATATTTTTACATA
1 TTATATTATATTTTTA-ATA
5095024 TTATATTAT
1 TTATATTAT
5095033 GTATATATAT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
18 1 0.03
19 9 0.24
20 19 0.50
21 8 0.21
22 1 0.03
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (19 bp):
TTATATTATATTTTTAATA
Found at i:5095079 original size:45 final size:47
Alignment explanation
Indices: 5094990--5095080 Score: 109
Period size: 45 Copynumber: 2.0 Consensus size: 47
5094980 TATATCATGC
* *
5094990 ATATATTTTGAATACTATATTATATTTTTACATATTATATTATGTAT
1 ATATATTTTCAATACTATATTATATTTTTACATACTATATTATGTAT
*
5095037 ATATATTTTCAATA-T-TATTAGT-TTTTTATATACTAT-TCTATGTA
1 ATATATTTTCAATACTATATTA-TATTTTTACATACTATAT-TATGTA
5095081 CTTATCTCCA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
44 1 0.03
45 23 0.59
46 2 0.05
47 13 0.33
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.56
Consensus pattern (47 bp):
ATATATTTTCAATACTATATTATATTTTTACATACTATATTATGTAT
Found at i:5095599 original size:48 final size:48
Alignment explanation
Indices: 5095504--5095593 Score: 116
Period size: 48 Copynumber: 1.9 Consensus size: 48
5095494 TTTTTATACA
*
5095504 TCATGTATATATTTTGACAATATAAGTAGTATATATATTTTGACTATT
1 TCATGTATATATTTTCACAATATAAGTAGTATATATATTTTGACTATT
*
5095552 TCATGTATATA-TTTCA-AATATTA-T-GTATAGTATATTTCTGAC
1 TCATGTATATATTTTCACAATATAAGTAGTATA-TATATTT-TGAC
5095594 ACTATTACTA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 5 0.13
45 8 0.21
46 10 0.26
47 4 0.11
48 11 0.29
ACGTcount: A:0.34, C:0.08, G:0.10, T:0.48
Consensus pattern (48 bp):
TCATGTATATATTTTCACAATATAAGTAGTATATATATTTTGACTATT
Found at i:5115677 original size:5 final size:6
Alignment explanation
Indices: 5115651--5115684 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
5115641 TTCAGGCCCT
*
5115651 AAACAA AAATCAA AAACAA AAACAA AAATAA AAA
1 AAACAA AAA-CAA AAACAA AAACAA AAACAA AAA
5115685 TAAGTCCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.82, C:0.12, G:0.00, T:0.06
Consensus pattern (6 bp):
AAACAA
Found at i:5117156 original size:3 final size:3
Alignment explanation
Indices: 5117148--5117183 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
5117138 TCCATTCGCA
5117148 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
5117184 AAATTTTTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:5117941 original size:24 final size:25
Alignment explanation
Indices: 5117895--5117941 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
5117885 ATTTGGTATT
**
5117895 CAATTTTGTAAATTAAAAAAAAACC
1 CAATTTTGTAAAGCAAAAAAAAACC
5117920 CAATTTTG-AAAGCAAAAAAAAA
1 CAATTTTGTAAAGCAAAAAAAAA
5117942 AATCAGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.60, C:0.11, G:0.06, T:0.23
Consensus pattern (25 bp):
CAATTTTGTAAAGCAAAAAAAAACC
Found at i:5120307 original size:144 final size:144
Alignment explanation
Indices: 5120076--5120800 Score: 1171
Period size: 144 Copynumber: 5.0 Consensus size: 144
5120066 TGTGACCTGA
* *
5120076 AAGCCTATTGAAGGATAGATCCAATGCAACCAAATTCGTTAGTCTCCCAATTTCTTGTGGAATGG
1 AAGCCTATTGGAGGATAGATCCAATGCAACCAAATTCCTTAGTCTCCCAATTTCTTGTGGAATGG
* * *
5120141 ATCCATTAAGTTGGTTGTTTTGAAGGAACAACGAGACAAGATTGGTTAAGTAACTGACAGAAGAT
66 ATCCATTAAGTTGGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTAGCTGACAGAAGAT
5120206 GGGATTGGACCAAC
131 GGGATTGGACCAAC
* * * *
5120220 AAGACTATTGAAGGATAGATCGAATGAAACCAAATTCCTTAGTCTCCCAATTTCTTGTGGAATGG
1 AAGCCTATTGGAGGATAGATCCAATGCAACCAAATTCCTTAGTCTCCCAATTTCTTGTGGAATGG
* * * *
5120285 ATCCATTAAGTTGGTTCCTTTGAAGGAACAACGAGGCAAGATCGGCTAAGTAGATGACAGAAGAT
66 ATCCATTAAGTTGGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTAGCTGACAGAAGAT
5120350 GGGATTGGACCAAC
131 GGGATTGGACCAAC
* * *
5120364 AAGCATATTGGAGGATACATCCAATGCAACCAATTTCCTTAGTCTCCCAATTTCTTGTGGAATGG
1 AAGCCTATTGGAGGATAGATCCAATGCAACCAAATTCCTTAGTCTCCCAATTTCTTGTGGAATGG
* * * *
5120429 ATCCGTTAAGTTGGTTCCTTTGAAGGAACAAAGCGGCAAGATTGGTTAAGTAGCTGACAGAAGAT
66 ATCCATTAAGTTGGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTAGCTGACAGAAGAT
5120494 GGGATTGGACCAAC
131 GGGATTGGACCAAC
* *
5120508 AAGCCTATTGGAGGATAGATCTAATGCAACCAAATTCTTTAGTCTCCCAATTTCTTGTGGAATGG
1 AAGCCTATTGGAGGATAGATCCAATGCAACCAAATTCCTTAGTCTCCCAATTTCTTGTGGAATGG
* * *
5120573 ATCCATTAAGTTTGTTGCTTTGAAGGTACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT
66 ATCCATTAAGTTGGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTAGCTGACAGAAGAT
*
5120638 GAGATTGGACCAAC
131 GGGATTGGACCAAC
* *
5120652 AAGCCTATTGGAGGATAGATCTAATGCAACCAAATTCCTTAGTCTCCAAATTTCTTGTGGAATGG
1 AAGCCTATTGGAGGATAGATCCAATGCAACCAAATTCCTTAGTCTCCCAATTTCTTGTGGAATGG
* * *
5120717 ATCCATTAAGTTTGTTGCTTTGAAGGTACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT
66 ATCCATTAAGTTGGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTAGCTGACAGAAGAT
5120782 GGGATTGGACCAAC
131 GGGATTGGACCAAC
5120796 AAGCC
1 AAGCC
5120801 AGTTGTTTGA
Statistics
Matches: 541, Mismatches: 40, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
144 541 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (144 bp):
AAGCCTATTGGAGGATAGATCCAATGCAACCAAATTCCTTAGTCTCCCAATTTCTTGTGGAATGG
ATCCATTAAGTTGGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTAGCTGACAGAAGAT
GGGATTGGACCAAC
Found at i:5122951 original size:23 final size:23
Alignment explanation
Indices: 5122905--5122951 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
5122895 TTTTCAATTG
*
5122905 TAATTCTAAAATGAAATTAAGATT
1 TAATTCTAAAA-GAAAATAAGATT
5122929 TAATTCTAAAA-AAAATAATGATT
1 TAATTCTAAAAGAAAATAA-GATT
5122952 GAAACAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 4 0.19
24 11 0.52
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.36
Consensus pattern (23 bp):
TAATTCTAAAAGAAAATAAGATT
Found at i:5126888 original size:144 final size:144
Alignment explanation
Indices: 5126674--5126995 Score: 450
Period size: 144 Copynumber: 2.2 Consensus size: 144
5126664 AGCCTATTGA
* *
5126674 AGGATAGATCCAATGCAACCAAATTCGTTAGTCTCCCAATCTCTTGTGGAACGGATCCATTAAGT
1 AGGATAGATCCAATGCAACCAAATTCCTTAGTCTCCCAATCTCTTGTGGAACGCATCCATTAAGT
* *
5126739 TTGTTGCATTGAAGGAGCAACGAGGTAAGATCGGTTAAGTAGCTGACAAAAGATGGGATTGGACC
66 TTGTTGCATTGAAGGAACAACGAGGCAAGATCGGTTAAGTAGCTGACAAAAGATGGGATTGGACC
*
5126804 AACAAGACTATTAG-
131 AACAAGACTACT-GT
* * * * *
5126818 AGGATAGATCCAATTCAACCAAATTCCTTAGTCTTCTAATTTCATT-TGGAATGCATCCATTAAG
1 AGGATAGATCCAATGCAACCAAATTCCTTAGTCTCCCAATCTC-TTGTGGAACGCATCCATTAAG
* * * * *
5126882 TTTGTTGCTTTGAAGGAACAGCGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGGATTGGAC
65 TTTGTTGCATTGAAGGAACAACGAGGCAAGATCGGTTAAGTAGCTGACAAAAGATGGGATTGGAC
* *
5126947 CAATAAGCCTACTGT
130 CAACAAGACTACTGT
*
5126962 AGGATAGATCGAATGCAACCAAATTCCTTAGTCT
1 AGGATAGATCCAATGCAACCAAATTCCTTAGTCT
5126996 ATAGATCAAA
Statistics
Matches: 157, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
143 1 0.01
144 154 0.98
145 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (144 bp):
AGGATAGATCCAATGCAACCAAATTCCTTAGTCTCCCAATCTCTTGTGGAACGCATCCATTAAGT
TTGTTGCATTGAAGGAACAACGAGGCAAGATCGGTTAAGTAGCTGACAAAAGATGGGATTGGACC
AACAAGACTACTGT
Found at i:5127000 original size:31 final size:31
Alignment explanation
Indices: 5126965--5127026 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
5126955 CTACTGTAGG
*
5126965 ATAGATCGAATGCAACCAAATTCCTTAGTCT
1 ATAGATCAAATGCAACCAAATTCCTTAGTCT
*
5126996 ATAGATCAAATGCAACCAAATTCTTTAGTCT
1 ATAGATCAAATGCAACCAAATTCCTTAGTCT
5127027 CCCAATTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (31 bp):
ATAGATCAAATGCAACCAAATTCCTTAGTCT
Found at i:5127112 original size:174 final size:175
Alignment explanation
Indices: 5126821--5127161 Score: 472
Period size: 174 Copynumber: 2.0 Consensus size: 175
5126811 CTATTAGAGG
* * * * *
5126821 ATAGATCCAATTCAACCAAATTCCTTAGTCTTCTAATTTCATTTGGAATGCATCCATTAAGTTTG
1 ATAGATCAAATGCAACCAAATTCCTTAGTCTCCCAATTTCATTTGGAATGCATCCATTAAGTTGG
* * *
5126886 TTGCTTTGAAGGAACAGCGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGGATTGGACCAAT
66 TTGCTTTGAAGGAACAACGAGGCAAGATTAGTTAAGTTGCTGACAGAAGATGGGATTGGACCAAC
* * *
5126951 AAGCCTACTGTAGGATAGATCGA-ATGCAACCAAATTCCTTAGTCT
131 AAGACTACTGGAGGATAGATCCAGA-GCAACCAAATTCCTTAGTCT
* * *
5126996 ATAGATCAAATGCAACCAAATTCTTTAGTCTCCCAATTTC-TTGTGGGATGGATCCATT-AGTTG
1 ATAGATCAAATGCAACCAAATTCCTTAGTCTCCCAATTTCATT-TGGAATGCATCCATTAAGTTG
* * * *
5127059 GTTGCTTTGAAGGTACAACGAGGCATGATTAGTTAAGTTGCTTATAGAAGATGGGATTGGACCAA
65 GTTGCTTTGAAGGAACAACGAGGCAAGATTAGTTAAGTTGCTGACAGAAGATGGGATTGGACCAA
*
5127124 CAAGACTATTGGAGGATAGATCCAGAGCAACCAAATTC
130 CAAGACTACTGGAGGATAGATCCAGAGCAACCAAATTC
5127162 TTTCGGCTCC
Statistics
Matches: 145, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
174 96 0.66
175 49 0.34
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (175 bp):
ATAGATCAAATGCAACCAAATTCCTTAGTCTCCCAATTTCATTTGGAATGCATCCATTAAGTTGG
TTGCTTTGAAGGAACAACGAGGCAAGATTAGTTAAGTTGCTGACAGAAGATGGGATTGGACCAAC
AAGACTACTGGAGGATAGATCCAGAGCAACCAAATTCCTTAGTCT
Found at i:5127255 original size:318 final size:319
Alignment explanation
Indices: 5126677--5127314 Score: 978
Period size: 318 Copynumber: 2.0 Consensus size: 319
5126667 CTATTGAAGG
* *
5126677 ATAGATCCAATGCAACCAAATTCGTTAGTCTCCCAATCTCTTGTGGAACGGATCCATTAAGTTTG
1 ATAGATCAAATGCAACCAAATTCGTTAGTCTCCCAATCTCTTGTGGAACGGATCCATTAAGTTGG
* *
5126742 TTGCATTGAAGGAGCAACGAGGTAAGATCGGTTAAGTAGCTGACAAAAGATGGGATTGGACCAAC
66 TTGCATTGAAGGAGCAACGAGGCAAGATCAGTTAAGTAGCTGACAAAAGATGGGATTGGACCAAC
* * * *
5126807 AAGACTATTAGAGGATAGATCCAATTCAACCAAATTCCTTAGTCTTCTAATTTCATTTGGAATGC
131 AAGACTATTAGAGGATAGATCCAATGCAACCAAATTCCTTAGGCTCCCAATTTCATTTGGAATGC
* *
5126872 ATCCATTAAGTTTGTTGCTTTGAAGGAACAGCGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT
196 ATCCATTAAGTTGGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT
*
5126937 GGGATTGGACCAATAAGCCTACTGTAGGATAGATCGAATGCAACCAAATTCCTTAGTCT
261 GGGATTGGACCAATAAGCCTACTGTAGGATAGATCGAATGCAACCAAATTCCTTAATCT
* * * *
5126996 ATAGATCAAATGCAACCAAATTCTTTAGTCTCCCAATTTCTTGTGGGATGGATCCATT-AGTTGG
1 ATAGATCAAATGCAACCAAATTCGTTAGTCTCCCAATCTCTTGTGGAACGGATCCATTAAGTTGG
* * * * * * *
5127060 TTGCTTTGAAGGTA-CAACGAGGCATGATTAGTTAAGTTGCTTATAGAAGATGGGATTGGACCAA
66 TTGCATTGAAGG-AGCAACGAGGCAAGATCAGTTAAGTAGCTGACAAAAGATGGGATTGGACCAA
* * *
5127124 CAAGACTATTGGAGGATAGATCCAGA-GCAACCAAATTCTTTCGGCTCCCAATTTC-TTGTGGAA
130 CAAGACTATTAGAGGATAGATCCA-ATGCAACCAAATTCCTTAGGCTCCCAATTTCATT-TGGAA
*
5127187 TGGATCCATTAAGTTGGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAA
193 TGCATCCATTAAGTTGGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAA
*
5127252 GATGGGATTGGACCAATAAGCCTATTGTAGGATAGATCGAATGCAACCAAATTCCTTAATCT
258 GATGGGATTGGACCAATAAGCCTACTGTAGGATAGATCGAATGCAACCAAATTCCTTAATCT
5127314 A
1 A
5127315 CCAATTTCTT
Statistics
Matches: 289, Mismatches: 27, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
317 2 0.01
318 232 0.80
319 55 0.19
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (319 bp):
ATAGATCAAATGCAACCAAATTCGTTAGTCTCCCAATCTCTTGTGGAACGGATCCATTAAGTTGG
TTGCATTGAAGGAGCAACGAGGCAAGATCAGTTAAGTAGCTGACAAAAGATGGGATTGGACCAAC
AAGACTATTAGAGGATAGATCCAATGCAACCAAATTCCTTAGGCTCCCAATTTCATTTGGAATGC
ATCCATTAAGTTGGTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT
GGGATTGGACCAATAAGCCTACTGTAGGATAGATCGAATGCAACCAAATTCCTTAATCT
Found at i:5127444 original size:144 final size:144
Alignment explanation
Indices: 5126996--5127423 Score: 653
Period size: 144 Copynumber: 3.0 Consensus size: 144
5126986 TCCTTAGTCT
*
5126996 ATAGATCAAATGCAACCAAATTCTTTAGTCTCCCAATTTCTTGTGGGATGGATCCATT-AGTTGG
1 ATAGATCAAATGCAACCAAATTCTTTAGTCTCCCAATTTCTTGTGGAATGGATCCATTAAGTTGG
* * *
5127060 TTGCTTTGAAGGTACAACGAGGCATGATTAGTTAAGTTGCTTATAGAAGATGGGATTGGACCAAC
66 TTGCTTTGAAGGTACAACGAGGCAAGATTGGTTAAGTTGCTGATAGAAGATGGGATTGGACCAAC
*
5127125 AAGACTATTGGAGG
131 AAGACTATTGTAGG
* * *
5127139 ATAGATCCAGA-GCAACCAAATTCTTTCGGCTCCCAATTTCTTGTGGAATGGATCCATTAAGTTG
1 ATAGAT-CAAATGCAACCAAATTCTTTAGTCTCCCAATTTCTTGTGGAATGGATCCATTAAGTTG
* *
5127203 GTTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGGATTGGACCAA
65 GTTGCTTTGAAGGTACAACGAGGCAAGATTGGTTAAGTTGCTGATAGAAGATGGGATTGGACCAA
* *
5127268 TAAGCCTATTGTAGG
130 CAAGACTATTGTAGG
* * * * * *
5127283 ATAGATCGAATGCAACCAAATTCCTTAATCTACCAATTTCTTGTGGAATAGATCCATTAAGTTTG
1 ATAGATCAAATGCAACCAAATTCTTTAGTCTCCCAATTTCTTGTGGAATGGATCCATTAAGTTGG
*
5127348 TTGCTTTAAAGGTACAACGAGGCAAGATTGGTTAAGTTGCTGATAGAAGATGGGATTGGACCAAC
66 TTGCTTTGAAGGTACAACGAGGCAAGATTGGTTAAGTTGCTGATAGAAGATGGGATTGGACCAAC
*
5127413 AAGACTGTTGT
131 AAGACTATTGT
5127424 TTGAGAGATC
Statistics
Matches: 255, Mismatches: 27, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
143 52 0.20
144 203 0.80
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (144 bp):
ATAGATCAAATGCAACCAAATTCTTTAGTCTCCCAATTTCTTGTGGAATGGATCCATTAAGTTGG
TTGCTTTGAAGGTACAACGAGGCAAGATTGGTTAAGTTGCTGATAGAAGATGGGATTGGACCAAC
AAGACTATTGTAGG
Found at i:5127463 original size:144 final size:144
Alignment explanation
Indices: 5126996--5127477 Score: 582
Period size: 144 Copynumber: 3.4 Consensus size: 144
5126986 TCCTTAGTCT
* * * *
5126996 ATAGATCAA-ATGCAACCAAATTCTTTA-GTCTCCCAATTTCTTGTGGGATGGATCCATT-AGTT
1 ATAGATCAAGAT-CAACCAAATTCTCTAGGT-TACCAATTTCTTGTGGAATAGATCCATTAAGTT
* * *
5127058 GGTTGCTTTGAAGGTACAACGAGGCATGATTAGTTAAGTTGCTTATAGAAGATGGGATTGGACCA
64 GGTTGCTTTGAAGGTACAACGAGGCAAGATTGGTTAAGTTGCTGATAGAAGATGGGATTGGACCA
*
5127123 ACAAGACTATTGGAGG
129 ACAAGACTATTGTAGG
* * * * * * *
5127139 ATAGATCCAGAGCAACCAAATTCTTTCGGCTCCCAATTTCTTGTGGAATGGATCCATTAAGTTGG
1 ATAGATCAAGATCAACCAAATTCTCTAGGTTACCAATTTCTTGTGGAATAGATCCATTAAGTTGG
* * *
5127204 TTGCTTTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGATGGGATTGGACCAAT
66 TTGCTTTGAAGGTACAACGAGGCAAGATTGGTTAAGTTGCTGATAGAAGATGGGATTGGACCAAC
*
5127269 AAGCCTATTGTAGG
131 AAGACTATTGTAGG
* *
5127283 ATAGATCGA-ATGCAACCAAATTC-CTTA-ATCTACCAATTTCTTGTGGAATAGATCCATTAAGT
1 ATAGATCAAGAT-CAACCAAATTCTC-TAGGT-TACCAATTTCTTGTGGAATAGATCCATTAAGT
* *
5127345 TTGTTGCTTTAAAGGTACAACGAGGCAAGATTGGTTAAGTTGCTGATAGAAGATGGGATTGGACC
63 TGGTTGCTTTGAAGGTACAACGAGGCAAGATTGGTTAAGTTGCTGATAGAAGATGGGATTGGACC
* **
5127410 AACAAGACTGTTGTTTG
128 AACAAGACTATTGTAGG
* * * * *
5127427 AGAGATCAAGATCAACCATACTCTCTAGGTTTCCAATATT-TGGTGGAATAG
1 ATAGATCAAGATCAACCAAATTCTCTAGGTTACCAAT-TTCTTGTGGAATAG
5127478 GACCACGGAG
Statistics
Matches: 292, Mismatches: 37, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
143 50 0.17
144 236 0.81
145 6 0.02
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (144 bp):
ATAGATCAAGATCAACCAAATTCTCTAGGTTACCAATTTCTTGTGGAATAGATCCATTAAGTTGG
TTGCTTTGAAGGTACAACGAGGCAAGATTGGTTAAGTTGCTGATAGAAGATGGGATTGGACCAAC
AAGACTATTGTAGG
Done.