Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 170 of 250
Found at i:54565090 original size:12 final size:12
Alignment explanation
Indices: 54565073--54565139 Score: 50
Period size: 12 Copynumber: 5.5 Consensus size: 12
54565063 GTTTTTTAAA
54565073 AAAATAATATAT
1 AAAATAATATAT
*
54565085 AAAATAAAAAGTATGT
1 AAAAT---AA-TATAT
*
54565101 AAAATAATTTAT
1 AAAATAATATAT
54565113 AAAATAAT-TAT
1 AAAATAATATAT
*
54565124 ATAAT-ATATA-
1 AAAATAATATAT
54565134 AAAATA
1 AAAATA
54565140 TCAATTTAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
10 6 0.14
11 9 0.20
12 16 0.36
13 2 0.05
15 2 0.05
16 9 0.20
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (12 bp):
AAAATAATATAT
Found at i:54565260 original size:12 final size:12
Alignment explanation
Indices: 54565243--54565267 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
54565233 TTTTAAAATT
54565243 ATGAATAATATA
1 ATGAATAATATA
54565255 ATGAATAATATA
1 ATGAATAATATA
54565267 A
1 A
54565268 AACATAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
ATGAATAATATA
Found at i:54565324 original size:11 final size:11
Alignment explanation
Indices: 54565308--54565353 Score: 56
Period size: 11 Copynumber: 3.9 Consensus size: 11
54565298 TATACATAAC
54565308 ATATAATAAAA
1 ATATAATAAAA
*
54565319 AAATAATAAGTAA
1 ATATAATAA--AA
54565332 TATATAATAAAA
1 -ATATAATAAAA
54565344 ATATAATAAA
1 ATATAATAAA
54565354 TGTTATATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
11 18 0.60
12 2 0.07
13 2 0.07
14 8 0.27
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (11 bp):
ATATAATAAAA
Found at i:54565387 original size:27 final size:26
Alignment explanation
Indices: 54565308--54565389 Score: 98
Period size: 25 Copynumber: 3.2 Consensus size: 26
54565298 TATACATAAC
*
54565308 ATATAATAAAAAAATAATAAGTA-AT
1 ATATAATAAAAAAATAATAAATATAT
* *
54565333 ATATAATAAAAATATAATAAATGT-T
1 ATATAATAAAAAAATAATAAATATAT
54565358 ATATAATAAAATAAA-ATATAAATATAT
1 ATATAATAAAA-AAATA-ATAAATATAT
54565385 ATATA
1 ATATA
54565390 GGAAAATAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
25 33 0.69
26 9 0.19
27 6 0.12
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (26 bp):
ATATAATAAAAAAATAATAAATATAT
Found at i:54571995 original size:23 final size:23
Alignment explanation
Indices: 54571963--54572030 Score: 59
Period size: 23 Copynumber: 2.8 Consensus size: 23
54571953 TACTTAATTA
*
54571963 ATAATTAATATAATATATTATAA-T
1 ATAATAAATAT-ATATATTA-AAGT
*
54571987 -TAATAAATATCTTATACTTAAAGT
1 ATAATAAATAT-ATATA-TTAAAGT
54572011 ATAAGTAAATATATATATTA
1 ATAA-TAAATATATATATTA
54572031 CATTTGTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
23 15 0.42
24 7 0.19
25 7 0.19
26 7 0.19
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (23 bp):
ATAATAAATATATATATTAAAGT
Found at i:54572001 original size:18 final size:19
Alignment explanation
Indices: 54571963--54572007 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
54571953 TACTTAATTA
54571963 ATAATTAATATAATATATT
1 ATAATTAATATAATATATT
*
54571982 ATAATTAATA-AATATCTT
1 ATAATTAATATAATATATT
*
54572000 ATACTTAA
1 ATAATTAA
54572008 AGTATAAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (19 bp):
ATAATTAATATAATATATT
Found at i:54573646 original size:17 final size:16
Alignment explanation
Indices: 54573613--54573643 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
54573603 GCGCTGAAAC
54573613 ATATTATGTCAAAAAG
1 ATATTATGTCAAAAAG
*
54573629 ATATTGTGTCAAAAA
1 ATATTATGTCAAAAA
54573644 AGAACAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.13, T:0.32
Consensus pattern (16 bp):
ATATTATGTCAAAAAG
Found at i:54575095 original size:2 final size:2
Alignment explanation
Indices: 54575088--54575128 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
54575078 AAGGGTATTC
54575088 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
54575129 TGTGAACATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:54576441 original size:17 final size:19
Alignment explanation
Indices: 54576419--54576462 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
54576409 ACAATAATAT
54576419 AAAATA-AT-GATATGTAC
1 AAAATATATAGATATGTAC
*
54576436 AAAATATATATATATGTAC
1 AAAATATATAGATATGTAC
*
54576455 ATAATATA
1 AAAATATA
54576463 GTTATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 6 0.26
18 2 0.09
19 15 0.65
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (19 bp):
AAAATATATAGATATGTAC
Found at i:54577127 original size:24 final size:24
Alignment explanation
Indices: 54577099--54577144 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
54577089 TCAAAATGCA
*
54577099 ATTTTTATTTTTTAAAATTTTTTT
1 ATTTTTATTTTTTAAAAATTTTTT
54577123 ATTTTTATTTTTTAAAAATTTT
1 ATTTTTATTTTTTAAAAATTTT
54577145 GAAAACTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (24 bp):
ATTTTTATTTTTTAAAAATTTTTT
Found at i:54577981 original size:5 final size:5
Alignment explanation
Indices: 54577956--54577995 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
54577946 GAAGTTATAC
54577956 TTTTAA TTTT- TTTTA -TTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
54577996 GAATGTTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
4 8 0.25
5 20 0.62
6 4 0.12
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:54577988 original size:19 final size:19
Alignment explanation
Indices: 54577956--54577992 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
54577946 GAAGTTATAC
54577956 TTTTAATTTTTTTTATTTA
1 TTTTAATTTTTTTTATTTA
54577975 TTTT-ATTTTATTTTATTT
1 TTTTAATTTT-TTTTATTT
54577993 TATGAATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTAATTTTTTTTATTTA
Found at i:54580915 original size:14 final size:16
Alignment explanation
Indices: 54580891--54580922 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
54580881 TATTTAAAAG
54580891 ATAACATTAAAA-GAA
1 ATAACATTAAAATGAA
54580906 ATAA-ATTAAAATGAA
1 ATAACATTAAAATGAA
54580921 AT
1 AT
54580923 GAAAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.25
Consensus pattern (16 bp):
ATAACATTAAAATGAA
Found at i:54591274 original size:19 final size:19
Alignment explanation
Indices: 54591232--54591273 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
54591222 CTAAAAATAT
* *
54591232 TAAAATAAATATTTATTAA
1 TAAAATAAAAATATATTAA
54591251 TAAAATAAAAATATATT-A
1 TAAAATAAAAATATATTAA
54591269 TAAAA
1 TAAAA
54591274 AAGTTTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAAATAAAAATATATTAA
Found at i:54591408 original size:11 final size:11
Alignment explanation
Indices: 54591388--54591426 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
54591378 ATAACAACAA
54591388 CAAAATAATAG
1 CAAAATAATAG
* *
54591399 CAATATAATAA
1 CAAAATAATAG
54591410 CAAAATAATAG
1 CAAAATAATAG
54591421 CAAAAT
1 CAAAAT
54591427 GACAACAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.64, C:0.10, G:0.05, T:0.21
Consensus pattern (11 bp):
CAAAATAATAG
Found at i:54591433 original size:22 final size:22
Alignment explanation
Indices: 54591383--54591447 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
54591373 TCCAAATAAC
*
54591383 AACAACAAAATAATAGCAATAT
1 AACAACAAAATAATAGCAAAAT
*
54591405 AATAACAAAATAATAGCAAAAT
1 AACAACAAAATAATAGCAAAAT
* * *
54591427 GACAACAAAACAACAGCAAAA
1 AACAACAAAATAATAGCAAAA
54591448 CAGCAGTAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.66, C:0.15, G:0.06, T:0.12
Consensus pattern (22 bp):
AACAACAAAATAATAGCAAAAT
Found at i:54598340 original size:33 final size:33
Alignment explanation
Indices: 54598298--54598363 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
54598288 AAAATAAGTT
54598298 TAAAAATATAAAATCTTCAATTAGTTATGAAAA
1 TAAAAATATAAAATCTTCAATTAGTTATGAAAA
*
54598331 TAAAAATATAAAATCTTCTATTAGTTATGAAAA
1 TAAAAATATAAAATCTTCAATTAGTTATGAAAA
54598364 ATTAGTAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (33 bp):
TAAAAATATAAAATCTTCAATTAGTTATGAAAA
Found at i:54598559 original size:31 final size:31
Alignment explanation
Indices: 54598498--54598560 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
54598488 ATTCTAATAG
*
54598498 TGACTTAAATAAAAATTTCTGAATAATTTAA
1 TGACTTAAATAAAAATTTCTAAATAATTTAA
*
54598529 TGACTTAAATAAAAACTTTC-AAATAGTTTAA
1 TGACTTAAATAAAAA-TTTCTAAATAATTTAA
54598560 T
1 T
54598561 AACTATTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 25 0.86
32 4 0.14
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (31 bp):
TGACTTAAATAAAAATTTCTAAATAATTTAA
Found at i:54606854 original size:25 final size:25
Alignment explanation
Indices: 54606807--54606854 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
54606797 TGATATTTAT
* *
54606807 AATAATTATTTAATTTTATAAATGA
1 AATAATTATTTAATATTAAAAATGA
54606832 AATAATTA-TTAATAATTAAAAAT
1 AATAATTATTTAAT-ATTAAAAAT
54606855 ATGAATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
AATAATTATTTAATATTAAAAATGA
Found at i:54607307 original size:6 final size:6
Alignment explanation
Indices: 54607296--54607321 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
54607286 GAGATCAGAA
54607296 AGAAGC AGAAGC AGAAGC AGAAGC AG
1 AGAAGC AGAAGC AGAAGC AGAAGC AG
54607322 GTGTTGACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.35, T:0.00
Consensus pattern (6 bp):
AGAAGC
Found at i:54609161 original size:20 final size:19
Alignment explanation
Indices: 54609138--54609180 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
54609128 AAATTTAATA
*
54609138 TTATATATTTACTTATTTAT
1 TTATATAATTAC-TATTTAT
* *
54609158 TTATCTAATTACTATTTGT
1 TTATATAATTACTATTTAT
54609177 TTAT
1 TTAT
54609181 TATCTTTTGC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (19 bp):
TTATATAATTACTATTTAT
Found at i:54614514 original size:13 final size:13
Alignment explanation
Indices: 54614498--54614530 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
54614488 CAATGCTTTT
54614498 GAAAAGTGCTATG
1 GAAAAGTGCTATG
*
54614511 GAAAAGTGCTATT
1 GAAAAGTGCTATG
54614524 GAAAAGT
1 GAAAAGT
54614531 TTGGTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.27, T:0.24
Consensus pattern (13 bp):
GAAAAGTGCTATG
Found at i:54615299 original size:66 final size:66
Alignment explanation
Indices: 54615220--54615355 Score: 272
Period size: 66 Copynumber: 2.1 Consensus size: 66
54615210 ATTCTAATCC
54615220 TTTTACTTCTTTTCTTTTGAAATTATATACTCAAAATTAATATTTGATATAATTTTGTACCTCAA
1 TTTTACTTCTTTTCTTTTGAAATTATATACTCAAAATTAATATTTGATATAATTTTGTACCTCAA
54615285 T
66 T
54615286 TTTTACTTCTTTTCTTTTGAAATTATATACTCAAAATTAATATTTGATATAATTTTGTACCTCAA
1 TTTTACTTCTTTTCTTTTGAAATTATATACTCAAAATTAATATTTGATATAATTTTGTACCTCAA
54615351 T
66 T
54615352 TTTT
1 TTTT
54615356 CCTTAAAAAG
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 70 1.00
ACGTcount: A:0.31, C:0.12, G:0.04, T:0.53
Consensus pattern (66 bp):
TTTTACTTCTTTTCTTTTGAAATTATATACTCAAAATTAATATTTGATATAATTTTGTACCTCAA
T
Found at i:54619991 original size:22 final size:23
Alignment explanation
Indices: 54619934--54619991 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 23
54619924 GTGATTATAT
* *
54619934 TTTATTTCTATTTCCACAGGGTAG
1 TTTAGTTCTA-TTCCACAAGGTAG
* *
54619958 GTTAGTTC-ATTCGACAAGGTAG
1 TTTAGTTCTATTCCACAAGGTAG
54619980 TTTA-TTCTATTC
1 TTTAGTTCTATTC
54619992 TGTGACTGCA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 3 0.11
22 18 0.64
23 1 0.04
24 6 0.21
ACGTcount: A:0.22, C:0.16, G:0.17, T:0.45
Consensus pattern (23 bp):
TTTAGTTCTATTCCACAAGGTAG
Found at i:54624197 original size:19 final size:19
Alignment explanation
Indices: 54624146--54624216 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 19
54624136 AAAATTACAA
* * *
54624146 AAAAATCAAAGTAATTTTC
1 AAAATTCAAAATAATTTTT
*
54624165 AAAATTTGAAAATAATTTTT
1 AAAA-TTCAAAATAATTTTT
*
54624185 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTTT
54624203 AGAAATTCTAAAAT
1 A-AAATTC-AAAAT
54624217 TTATATTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
18 6 0.14
19 17 0.40
20 20 0.47
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.37
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:54624218 original size:18 final size:19
Alignment explanation
Indices: 54624173--54624221 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
54624163 TCAAAATTTG
*
54624173 AAAATAATTTTTA-AAATTC
1 AAAAT-ATTTATAGAAATTC
54624192 AAAATATTTATAGAAATTC
1 AAAATATTTATAGAAATTC
*
54624211 TAAA-ATTTATA
1 AAAATATTTATA
54624222 TTTTTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (19 bp):
AAAATATTTATAGAAATTC
Found at i:54624245 original size:19 final size:18
Alignment explanation
Indices: 54624212--54624258 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 18
54624202 TAGAAATTCT
*
54624212 AAAATTTATATTTTTTAA
1 AAAATTTAAATTTTTTAA
54624230 AAAATTATAAATTTTTTAA
1 AAAATT-TAAATTTTTTAA
*
54624249 AAAATCTAAA
1 AAAATTTAAA
54624259 AAATATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
AAAATTTAAATTTTTTAA
Found at i:54624258 original size:18 final size:19
Alignment explanation
Indices: 54624212--54624253 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
54624202 TAGAAATTCT
*
54624212 AAAATT-TATATTTTTTAA
1 AAAATTATAAATTTTTTAA
54624230 AAAATTATAAATTTTTTAA
1 AAAATTATAAATTTTTTAA
54624249 AAAAT
1 AAAAT
54624254 CTAAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
AAAATTATAAATTTTTTAA
Found at i:54624269 original size:19 final size:19
Alignment explanation
Indices: 54624247--54624285 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
54624237 TAAATTTTTT
54624247 AAAAAATCTAA-AAAATATA
1 AAAAAATCTAATAAAA-ATA
*
54624266 AAAAAATTTAATAAAAATA
1 AAAAAATCTAATAAAAATA
54624285 A
1 A
54624286 TAATTTTAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (19 bp):
AAAAAATCTAATAAAAATA
Found at i:54624609 original size:21 final size:21
Alignment explanation
Indices: 54624585--54624624 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
54624575 ACCTTTTCTA
54624585 AAGTTAAAA-GTCAAAACTATC
1 AAGTTAAAAGGT-AAAACTATC
54624606 AAGTTAAAAGGTAAAACTA
1 AAGTTAAAAGGTAAAACTA
54624625 CTTTGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.55, C:0.10, G:0.12, T:0.23
Consensus pattern (21 bp):
AAGTTAAAAGGTAAAACTATC
Found at i:54626101 original size:21 final size:21
Alignment explanation
Indices: 54626077--54626128 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
54626067 AGACAGGGAC
54626077 ACACGCCCGTGTGGAAGGGTT
1 ACACGCCCGTGTGGAAGGGTT
* **
54626098 ACACACTGGTGTGGAAGGGTT
1 ACACGCCCGTGTGGAAGGGTT
54626119 ACACGCCCGT
1 ACACGCCCGT
54626129 ATGTCTTTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.21, C:0.25, G:0.35, T:0.19
Consensus pattern (21 bp):
ACACGCCCGTGTGGAAGGGTT
Found at i:54627395 original size:48 final size:48
Alignment explanation
Indices: 54627324--54627607 Score: 216
Period size: 48 Copynumber: 5.9 Consensus size: 48
54627314 AGGGTAAATT
* *
54627324 GCCGATG-CATGTCCCAGATATGGTCTTACACTGGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAG
* * *** ** * *
54627371 GCCGATGCCATATCCCAAACATGGTCTTACACTAGCTTTTAACTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAG
** * * * * * *
54627419 ATCGATGCCATGTCCCAGTCATGATCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-GTCGAG
* * * *
54627467 GTCGATGCCATATCCCAGACATGGTCTTACACTAG-TACACATGTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-CACATGTCGAG
* * * * * ** * *
54627515 ACCGATGCCATCTCCCAGACAAGGTCTTAAACTGGCTGTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-GTCGAG
*
54627563 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTC
54627608 ACCTAAATAC
Statistics
Matches: 174, Mismatches: 56, Indels: 13
0.72 0.23 0.05
Matches are distributed among these distances:
47 10 0.06
48 161 0.93
49 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAG
Found at i:54627451 original size:96 final size:97
Alignment explanation
Indices: 54627325--54627604 Score: 340
Period size: 96 Copynumber: 2.9 Consensus size: 97
54627315 GGGTAAATTG
* * *
54627325 CCGATG-CATGTCCCAGAT-ATGGTCTTACACTGGCTCACAT-GTCGAGGCCGATGCCATATCCC
1 CCGATGCCATGTCCCAG-TCATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCCATATCCC
* **
54627387 AAACATGGTCTTACACTAGCTTTTA-A-CTCAATA
64 AGACATGGTCTTACACTAGC-TACACATCTCAATA
* * *
54627420 TCGATGCCATGTCCCAGTCATGATCTTACACTGGCTCTCATAATGTGGTCGATGCCATATCCCAG
1 CCGATGCCATGTCCCAGTCATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATATCCCAG
*
54627485 ACATGGTCTTACACTAG-TACACATGTCAATA
66 ACATGGTCTTACACTAGCTACACATCTCAATA
* * * * * *
54627516 CCGATGCCATCTCCCAGACAAGGTCTTAAACTGGCTGTCATAATGTGGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGTCATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATATCCCAG
54627581 ACATGGTCTTACACTAGC-ACACAT
66 ACATGGTCTTACACTAGCTACACAT
54627605 GTCACCTAAA
Statistics
Matches: 160, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
94 2 0.01
95 7 0.04
96 150 0.94
97 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (97 bp):
CCGATGCCATGTCCCAGTCATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATATCCCAG
ACATGGTCTTACACTAGCTACACATCTCAATA
Found at i:54628201 original size:30 final size:30
Alignment explanation
Indices: 54628165--54628221 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
54628155 ACCAAGATTC
54628165 ATTTTCTTCCATAAAAATTCAGCAAAATTT
1 ATTTTCTTCCATAAAAATTCAGCAAAATTT
54628195 ATTTTCTTCCATAAAAATTCAGCAAAA
1 ATTTTCTTCCATAAAAATTCAGCAAAA
54628222 AACATAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.37
Consensus pattern (30 bp):
ATTTTCTTCCATAAAAATTCAGCAAAATTT
Found at i:54637034 original size:41 final size:40
Alignment explanation
Indices: 54636977--54637058 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 40
54636967 TACCGTACCT
54636977 TATGGTGTGTAGGGATGAATGGGTCGATTTTATTCCCCACA
1 TATGGTGTGTAGGGATGAATGGGTCGATTTTATT-CCCACA
** *
54637018 TATGGTGTGTAGGGATGGGTGGGTTGATTTTATTCCCACA
1 TATGGTGTGTAGGGATGAATGGGTCGATTTTATTCCCACA
54637058 T
1 T
54637059 GGTGTGATGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
40 7 0.18
41 31 0.82
ACGTcount: A:0.20, C:0.12, G:0.32, T:0.37
Consensus pattern (40 bp):
TATGGTGTGTAGGGATGAATGGGTCGATTTTATTCCCACA
Found at i:54644010 original size:17 final size:18
Alignment explanation
Indices: 54643984--54644018 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
54643974 CTAAAATAGT
54643984 AACAAAATTA-ACAATAA
1 AACAAAATTATACAATAA
*
54644001 AACAAGATTATACAATAA
1 AACAAAATTATACAATAA
54644019 CTAAACAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.20
Consensus pattern (18 bp):
AACAAAATTATACAATAA
Found at i:54648725 original size:23 final size:23
Alignment explanation
Indices: 54648679--54648735 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
54648669 TTGTATAAGT
* *
54648679 AAATAATAATTATTATTAAATATA
1 AAATAATAA-TATAACTAAATATA
*
54648703 ATATAATAATATAACTAAATATA
1 AAATAATAATATAACTAAATATA
54648726 AAATAA-AATA
1 AAATAATAATA
54648736 AAAAGAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 4 0.14
23 17 0.59
24 8 0.28
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
AAATAATAATATAACTAAATATA
Found at i:54649690 original size:6 final size:6
Alignment explanation
Indices: 54649658--54649696 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
54649648 TGTGTATCGC
* * *
54649658 TACTGC TACTGC TACTGT TACTGT TACTAT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TAC
54649697 GGTGTATTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.44
Consensus pattern (6 bp):
TACTGT
Found at i:54653316 original size:111 final size:111
Alignment explanation
Indices: 54653122--54653343 Score: 444
Period size: 111 Copynumber: 2.0 Consensus size: 111
54653112 CGGATTTATT
54653122 CACTTGTGACATTCATAGTGTAGCATACCTAAATCCTGAGTGAATGGTGGGCTATGTATGCGTGA
1 CACTTGTGACATTCATAGTGTAGCATACCTAAATCCTGAGTGAATGGTGGGCTATGTATGCGTGA
54653187 CTCATGCACTTTGATATAAGTAAAAGCCTGAGTTCAAATTGATAAA
66 CTCATGCACTTTGATATAAGTAAAAGCCTGAGTTCAAATTGATAAA
54653233 CACTTGTGACATTCATAGTGTAGCATACCTAAATCCTGAGTGAATGGTGGGCTATGTATGCGTGA
1 CACTTGTGACATTCATAGTGTAGCATACCTAAATCCTGAGTGAATGGTGGGCTATGTATGCGTGA
54653298 CTCATGCACTTTGATATAAGTAAAAGCCTGAGTTCAAATTGATAAA
66 CTCATGCACTTTGATATAAGTAAAAGCCTGAGTTCAAATTGATAAA
54653344 GAACTGAAAG
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.31
Consensus pattern (111 bp):
CACTTGTGACATTCATAGTGTAGCATACCTAAATCCTGAGTGAATGGTGGGCTATGTATGCGTGA
CTCATGCACTTTGATATAAGTAAAAGCCTGAGTTCAAATTGATAAA
Found at i:54662646 original size:6 final size:6
Alignment explanation
Indices: 54662635--54662661 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
54662625 TTGATTTCAT
54662635 TTTTTA TTTTTA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTT
54662662 ATTTATTTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:54665943 original size:30 final size:30
Alignment explanation
Indices: 54665887--54665943 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
54665877 AGGCACTTCT
*
54665887 ACACGGGTGATCCACACGCTCGTGTGTGAC
1 ACACGGGTGATCCACACGCCCGTGTGTGAC
*
54665917 ACACGGGTAGA-CCACACGCCCTTGTGT
1 ACACGGGT-GATCCACACGCCCGTGTGT
54665944 CATGGCCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (30 bp):
ACACGGGTGATCCACACGCCCGTGTGTGAC
Found at i:54671337 original size:22 final size:22
Alignment explanation
Indices: 54671296--54671339 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
54671286 TTCATCTAAA
54671296 ATTATTTAAAATAATATAAAAT
1 ATTATTTAAAATAATATAAAAT
54671318 ATTATATTAATAA-AAT-TAAAAT
1 ATTAT-TTAA-AATAATATAAAAT
54671340 TAAAAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 11 0.55
23 7 0.35
24 2 0.10
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTATTTAAAATAATATAAAAT
Found at i:54674505 original size:55 final size:54
Alignment explanation
Indices: 54674388--54674489 Score: 156
Period size: 55 Copynumber: 1.9 Consensus size: 54
54674378 GTTGTTTCTT
*
54674388 TCATTAATCTTCATGAATTTTTAAATAAAAAATAATTATATCACTCTTAAATTAC
1 TCATTAATCTTCATGAATTTTTAAATAAAAAATAATTATATCAC-CTTAAATCAC
*
54674443 TCATTAATCTTCATGAATTTTTAAATAAAAGATAA-TATAT-A-CTTAAA
1 TCATTAATCTTCATGAATTTTTAAATAAAAAATAATTATATCACCTTAAA
54674490 CACGTTCAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
51 6 0.13
53 1 0.02
54 5 0.11
55 34 0.74
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.41
Consensus pattern (54 bp):
TCATTAATCTTCATGAATTTTTAAATAAAAAATAATTATATCACCTTAAATCAC
Found at i:54674528 original size:17 final size:16
Alignment explanation
Indices: 54674497--54674534 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
54674487 AAACACGTTC
54674497 AAATT-TAATTTTTTT
1 AAATTGTAATTTTTTT
*
54674512 TAATTGTAATGTTTTTT
1 AAATTGTAAT-TTTTTT
54674529 AAATTG
1 AAATTG
54674535 GATTAGTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 4 0.21
16 4 0.21
17 11 0.58
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (16 bp):
AAATTGTAATTTTTTT
Found at i:54696262 original size:31 final size:31
Alignment explanation
Indices: 54696227--54696292 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
54696217 AAAATTACTT
54696227 AATAACCCAATGACTTAAATAAAAACTTTCA
1 AATAACCCAATGACTTAAATAAAAACTTTCA
** * *
54696258 AATAATTCACTGGCTTAAATAAAAACTTTCA
1 AATAACCCAATGACTTAAATAAAAACTTTCA
54696289 AATA
1 AATA
54696293 GTTCAATGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.50, C:0.17, G:0.05, T:0.29
Consensus pattern (31 bp):
AATAACCCAATGACTTAAATAAAAACTTTCA
Found at i:54696751 original size:21 final size:21
Alignment explanation
Indices: 54696727--54696766 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
54696717 TACGTAACAA
* *
54696727 AAAATTAAATTAAAATGAAAT
1 AAAATAAAATAAAAATGAAAT
54696748 AAAATAAAATAAAAATGAA
1 AAAATAAAATAAAAATGAA
54696767 TAGATCTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (21 bp):
AAAATAAAATAAAAATGAAAT
Found at i:54702685 original size:38 final size:37
Alignment explanation
Indices: 54702601--54702673 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
54702591 TGTAAAAAAG
*
54702601 AAAGAAAAGAGAATTTTTGATTGATGTAGATAGTGCA
1 AAAGAAAAGAGAATTTTTGATTGATGTAGACAGTGCA
*
54702638 AAAGAAAAGAGAATTTTTTATTGATGTAGACAGTGC
1 AAAGAAAAGAGAATTTTTGATTGATGTAGACAGTGC
54702674 GAATGGAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.42, C:0.04, G:0.23, T:0.30
Consensus pattern (37 bp):
AAAGAAAAGAGAATTTTTGATTGATGTAGACAGTGCA
Found at i:54703324 original size:19 final size:20
Alignment explanation
Indices: 54703284--54703322 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
54703274 AAGGAGTATG
54703284 TTCTGAAATGGAAAAAAAAA
1 TTCTGAAATGGAAAAAAAAA
54703304 TTCTGAAATGGAAAAAAAA
1 TTCTGAAATGGAAAAAAAA
54703323 TTTGGAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.59, C:0.05, G:0.15, T:0.21
Consensus pattern (20 bp):
TTCTGAAATGGAAAAAAAAA
Found at i:54704865 original size:3 final size:3
Alignment explanation
Indices: 54704857--54704903 Score: 76
Period size: 3 Copynumber: 15.3 Consensus size: 3
54704847 AAATAGATAT
*
54704857 TTA TTA TTA TAA TTA TTAA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
54704903 T
1 T
54704904 GAAATAAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 38 0.93
4 3 0.07
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:54705046 original size:33 final size:33
Alignment explanation
Indices: 54704979--54705047 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
54704969 ACACTTGTAA
*
54704979 AAATATATATATAATTACTTAAAATTTAAGTAT
1 AAATATATATATAATTACTTAAAATTTAAATAT
*
54705012 AAATATATTTATAATTA-TTAATTAA-TTAAATAT
1 AAATATATATATAATTACTTAA--AATTTAAATAT
54705045 AAA
1 AAA
54705048 ATAAATAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 4 0.12
33 26 0.81
34 2 0.06
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (33 bp):
AAATATATATATAATTACTTAAAATTTAAATAT
Found at i:54705672 original size:17 final size:18
Alignment explanation
Indices: 54705652--54705685 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
54705642 TAAATGAGTT
54705652 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
54705669 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
54705686 AAAAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:54709207 original size:21 final size:21
Alignment explanation
Indices: 54709183--54709255 Score: 83
Period size: 21 Copynumber: 3.5 Consensus size: 21
54709173 AGGCACTATA
* *
54709183 TGTGTTGTATCAGGTACCTCG
1 TGTGTCGTATCAGGCACCTCG
54709204 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
54709225 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
54709246 TGTGTCGTAT
1 TGTGTCGTAT
54709256 ACTGCTTCTC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.14, C:0.19, G:0.27, T:0.40
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:54714683 original size:115 final size:113
Alignment explanation
Indices: 54714537--54714766 Score: 338
Period size: 115 Copynumber: 2.0 Consensus size: 113
54714527 TATAAAATTG
* * *
54714537 TGGGGTCAAAGTTAAAATGCTTAAATTAAATTAGTACTTTTTTGAGGGGCCA-AATTAAAAAAAA
1 TGGGGCCAAAGTTAAAATGCTTAAATTAAATTACTACTTTTTAGAGGGGCCACAATT-AAAAAAA
* * * **
54714601 ATCATTTGACCGACGTTTAAAAAAGG-TTAAATTGGTTTTTTTTTTAAGTTT
65 ATCATTTGACCAAAGTCTAAAAAAGGCTT-AATT-G-AATTTTTTTAAGTTT
54714652 TGGGGCCAAAGTTAAAATGCTTAAATTAAATTACTACTTTTTAGAGGGGCCACAATTAAAAAAAA
1 TGGGGCCAAAGTTAAAATGCTTAAATTAAATTACTACTTTTTAGAGGGGCCACAATTAAAAAAAA
54714717 TCATTTGACCAAAGTCTAAAAAAGGCTTAATTGAATTTTTTTAAGTTT
66 TCATTTGACCAAAGTCTAAAAAAGGCTTAATTGAATTTTTTTAAGTTT
54714765 TG
1 TG
54714767 AGAGGGGCTA
Statistics
Matches: 105, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
113 15 0.14
114 1 0.01
115 83 0.79
116 6 0.06
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (113 bp):
TGGGGCCAAAGTTAAAATGCTTAAATTAAATTACTACTTTTTAGAGGGGCCACAATTAAAAAAAA
TCATTTGACCAAAGTCTAAAAAAGGCTTAATTGAATTTTTTTAAGTTT
Found at i:54716112 original size:19 final size:19
Alignment explanation
Indices: 54716085--54716135 Score: 50
Period size: 20 Copynumber: 2.7 Consensus size: 19
54716075 AAAGTTTTAT
* *
54716085 TTTAATATTTTTCATAAGC
1 TTTACTATTTTTCACAAGC
*
54716104 TTTACTATTATTACACAAGC
1 TTTACTATT-TTTCACAAGC
*
54716124 TTTTCT-TTTTTC
1 TTTACTATTTTTC
54716136 TTTAACTTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
18 3 0.12
19 10 0.38
20 13 0.50
ACGTcount: A:0.25, C:0.16, G:0.04, T:0.55
Consensus pattern (19 bp):
TTTACTATTTTTCACAAGC
Found at i:54717930 original size:11 final size:11
Alignment explanation
Indices: 54717914--54717961 Score: 53
Period size: 11 Copynumber: 4.1 Consensus size: 11
54717904 ATACGAAAAT
54717914 ATAAAAAGAAA
1 ATAAAAAGAAA
54717925 ATAAAAAGAAAAAAA
1 ATAAAAAG----AAA
54717940 ATAAAAAGAAA
1 ATAAAAAGAAA
54717951 A-AAAAAGAAA
1 ATAAAAAGAAA
54717961 A
1 A
54717962 AAATTAGAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
10 10 0.30
11 12 0.36
15 11 0.33
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.06
Consensus pattern (11 bp):
ATAAAAAGAAA
Found at i:54717945 original size:25 final size:25
Alignment explanation
Indices: 54717909--54717964 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 25
54717899 TATATATACG
*
54717909 AAAATATAAAAAGAAAATAAAAAGAA
1 AAAAAATAAAAAGAAAA-AAAAAGAA
54717935 AAAAAATAAAAAGAAAAAAAAAGAA
1 AAAAAATAAAAAGAAAAAAAAAGAA
54717960 AAAAA
1 AAAAA
54717965 TTAGAGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 13 0.45
26 16 0.55
ACGTcount: A:0.86, C:0.00, G:0.07, T:0.07
Consensus pattern (25 bp):
AAAAAATAAAAAGAAAAAAAAAGAA
Found at i:54717961 original size:15 final size:15
Alignment explanation
Indices: 54717917--54717955 Score: 69
Period size: 15 Copynumber: 2.5 Consensus size: 15
54717907 CGAAAATATA
54717917 AAAAGAAAATAAAAAG
1 AAAA-AAAATAAAAAG
54717933 AAAAAAAATAAAAAG
1 AAAAAAAATAAAAAG
54717948 AAAAAAAA
1 AAAAAAAA
54717956 AGAAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 19 0.83
16 4 0.17
ACGTcount: A:0.87, C:0.00, G:0.08, T:0.05
Consensus pattern (15 bp):
AAAAAAAATAAAAAG
Found at i:54718491 original size:23 final size:22
Alignment explanation
Indices: 54718455--54718506 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
54718445 TACTGTTATT
54718455 TTTATATTTATTACTAATATATA
1 TTTAT-TTTATTACTAATATATA
*
54718478 TTTATTTTAGTTACTACTATATA
1 TTTATTTTA-TTACTAATATATA
*
54718501 TATATT
1 TTTATT
54718507 ACGTATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTATTTTATTACTAATATATA
Found at i:54718689 original size:27 final size:28
Alignment explanation
Indices: 54718633--54718689 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
54718623 TGCATTTTTC
54718633 ATATTAATATATATATGCTTTTAATATT
1 ATATTAATATATATATGCTTTTAATATT
* *
54718661 ATATTATTATGTATATG-TTTTAATATT
1 ATATTAATATATATATGCTTTTAATATT
54718688 AT
1 AT
54718690 TAGCTATCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (28 bp):
ATATTAATATATATATGCTTTTAATATT
Found at i:54718868 original size:21 final size:21
Alignment explanation
Indices: 54718827--54718868 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
54718817 TCTAATATAA
* *
54718827 ATATATATATCATATAGGTTT
1 ATATACATATCATACAGGTTT
*
54718848 ATATACATATCATACATGTTT
1 ATATACATATCATACAGGTTT
54718869 CTTTATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (21 bp):
ATATACATATCATACAGGTTT
Found at i:54723790 original size:159 final size:159
Alignment explanation
Indices: 54723501--54723914 Score: 706
Period size: 159 Copynumber: 2.6 Consensus size: 159
54723491 GTTTCATTTC
*
54723501 TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAAATC
1 TGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAAATC
*
54723566 AACTCATATTGCGAAAGGTGAGTTGAGCGTTGGCTCACGTGTTGAGTCACTTTCAATTTCTGTTT
66 AACTCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACTTTCAATTTCTGTTT
54723631 TTATGTCTGTTTTCTAAATCAACTCATAT
131 TTATGTCTGTTTTCTAAATCAACTCATAT
*
54723660 TGCGAGAGGTGAGTTGAGCCACGGGGCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAAATC
1 TGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAAATC
54723725 AACTCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACTTTCAATTTCTGTTT
66 AACTCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACTTTCAATTTCTGTTT
54723790 TTATGTCTGTTTTCTAAATCAACTCATAT
131 TTATGTCTGTTTTCTAAATCAACTCATAT
* * * *
54723819 TGCGAGAGGTGAGTTGAGCCTCGAGGTACGCTGAGGTATTTTCAATTATT-T-TTTGTCAAAAAA
1 TGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAA--ATTCTACTT-TCAAAAAA
* *
54723882 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCT
63 ATCAACTCATATTGCGAAAGGTGAGTTGAGCCT
54723915 CGGGGCACGC
Statistics
Matches: 242, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
159 199 0.82
160 40 0.17
161 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (159 bp):
TGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAAATC
AACTCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACTTTCAATTTCTGTTT
TTATGTCTGTTTTCTAAATCAACTCATAT
Found at i:54723928 original size:75 final size:73
Alignment explanation
Indices: 54723805--54724008 Score: 300
Period size: 75 Copynumber: 2.8 Consensus size: 73
54723795 TCTGTTTTCT
* * * *
54723805 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGTACGCTGAGGTATTTTCAATTATTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
*
54723870 TTTGTCAAAA
66 TTTGGC--AA
*
54723880 AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
54723945 TTTGGCAA
66 TTTGGCAA
* * * *
54723953 AAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
54724009 TGATTTCTGT
Statistics
Matches: 118, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
73 53 0.45
75 65 0.55
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
TTTGGCAA
Found at i:54724000 original size:73 final size:73
Alignment explanation
Indices: 54723805--54724179 Score: 405
Period size: 73 Copynumber: 4.9 Consensus size: 73
54723795 TCTGTTTTCT
*
54723805 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGTAC-GCTGAGGTATTTTCAATTATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGG-ACAGCTGAGGTATTTTCAATTACT
* *
54723869 TTTTGTCAAAA
64 GTTTGGC-AAA
* * *
54723880 AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-GCTGAGGTATTTTCAATTACTG
54723945 TTTGGC-AA
65 TTTGGCAAA
* ** *
54723953 AAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTTGATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-GCTGAGGTATTTTCAATTACTG
**
54724018 TTTTTCAATTTATGTTTTCAA
65 TTTGGC-----A-------AA
* *
54724039 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-GCTGAGGTATTTTCAATTACTG
54724104 TTTGGC-AA
65 TTTGGCAAA
* * *
54724112 AAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCGATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-GCTGAGGTATTTTCAATTACTG
54724177 TTT
65 TTT
54724180 TTCAATTTAT
Statistics
Matches: 254, Mismatches: 31, Indels: 32
0.80 0.10 0.10
Matches are distributed among these distances:
73 128 0.50
74 2 0.01
75 60 0.24
86 64 0.25
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAGCTGAGGTATTTTCAATTACTGT
TTGGCAAA
Found at i:54724045 original size:234 final size:228
Alignment explanation
Indices: 54723646--54724179 Score: 685
Period size: 234 Copynumber: 2.3 Consensus size: 228
54723636 TCTGTTTTCT
* *
54723646 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGGGCACGCCGAGGTATTTTCAAATTCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC-AATTCT-
* * * * *
54723711 CTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACT
64 GTTTCAAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTAGG--CACATGCTGAGTCACT
* *
54723776 TTCAATTTCTGTTTTTATGTCTGTTTTCTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
127 TTCAATTTCTGTTTTTATGTATGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * * *
54723841 GAGGTACGCTGAGGTATTTTCAATTATTTTTTGTCAAAA
192 GAGGCACGCTGAGGTATTTTCAATTACTGTTTGGC--AA
*
54723880 AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATT-CTG
*** * *
54723945 TTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGG-ACATGCTGAGGT-ATTT
65 TTTCAAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCT-AGGCACATGCTGA-GTCACTT
** *
54724008 TTGATTTCTGTTTTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
128 TCAATTTCTGTTTTT--ATGTATGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
54724073 TCGGGGCACGCTGAGGTATTTTCAATTACTGTTTGGCAA
190 TCGAGGCACGCTGAGGTATTTTCAATTACTGTTTGGCAA
* * * * *
54724112 AAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCGATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTC-AATTCTG
54724177 TTT
65 TTT
54724180 TTCAATTTAT
Statistics
Matches: 264, Mismatches: 29, Indels: 16
0.85 0.09 0.05
Matches are distributed among these distances:
231 23 0.09
232 62 0.23
233 55 0.21
234 124 0.47
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.33
Consensus pattern (228 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTCTGT
TTCAAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTAGGCACATGCTGAGTCACTTTCA
ATTTCTGTTTTTATGTATGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGG
CACGCTGAGGTATTTTCAATTACTGTTTGGCAA
Found at i:54724061 original size:159 final size:161
Alignment explanation
Indices: 54723878--54724539 Score: 702
Period size: 159 Copynumber: 4.0 Consensus size: 161
54723868 TTTTTGTCAA
*
54723878 AAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGG-GGCACGCTGAGGTATTTTCAA-TT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTGGCACGCTGAGGTATTTTCAAGTT
54723941 ACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAT
66 ACTGTTT-GCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAT
*
54724006 TTTTGATTTCTGTTTTTCAATTTATG-TTTTC
130 TTTCGATTTCTGTTTTTCAATTTATGCTTTTC
54724037 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GGCACGCTGAGGTATTTTCAA-TT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTGGCACGCTGAGGTATTTTCAAGTT
54724100 ACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAT
66 ACTGTTT-GCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAT
54724165 TTTCGATTTCTGTTTTTCAATTTATG-TTTTC
130 TTTCGATTTCTGTTTTTCAATTTATGCTTTTC
* * * * * *
54724196 AAAAATCAA-TGCATATTGCTAAAGGTGAATTGAGTCTCAGGTCGCATAGC-GAGGTATTTTCAA
1 AAAAATCAACT-CATATTGCGAGAGGTGAGTTGAGCCTC-GGTGGCA-CGCTGAGGTATTTTCAA
* * * * * * * *
54724259 TTTA-TGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGTCATACGCCGAG
63 GTTACTGTTTGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACAT--GCTGAG
* *
54724323 GTATTTTCAATAGATGTT-T-TTTTTCAATTTCTGCTTCTC
126 GTATTTTC----GAT-TTCTGTTTTTCAATTTATGCTTTTC
* * * **
54724362 AAAAAAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCTTACACGCTGAGGTATTTT
1 -----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-TGGCACGCTGAGGTATTTT
* * * * *
54724427 CAAGTT-CTGCTTTTCAAAAAAAAAACAATTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCG
60 CAAGTTACTG-TTTGC----AAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGG---A
* * *
54724490 CACGCTGAGGTATTTTCAATTTTTCGTTTTTTCAATTTATGCTTTTC
117 CATGCTGAGGTATTTTCGATTTCT-G-TTTTTCAATTTATGCTTTTC
54724537 AAA
1 AAA
54724540 TTCTACTTTC
Statistics
Matches: 432, Mismatches: 37, Indels: 57
0.82 0.07 0.11
Matches are distributed among these distances:
158 1 0.00
159 189 0.44
160 43 0.10
161 21 0.05
162 18 0.04
165 13 0.03
166 8 0.02
167 2 0.00
170 7 0.02
171 51 0.12
172 9 0.02
175 20 0.05
176 48 0.11
178 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (161 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTGGCACGCTGAGGTATTTTCAAGTT
ACTGTTTGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATT
TTCGATTTCTGTTTTTCAATTTATGCTTTTC
Found at i:54724086 original size:86 final size:87
Alignment explanation
Indices: 54723932--54724094 Score: 258
Period size: 86 Copynumber: 1.9 Consensus size: 87
54723922 CGCTGAGGTA
*
54723932 TTTTCAATTACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATG
1 TTTTCAATTACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACACG
54723997 CTGAGGTATTTTTGATTTCTGT
66 CTGAGGTATTTTTGATTTCTGT
* * * *
54724019 TTTTCAATTTA-TGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTTCAA-TTACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACAC
54724082 GCTGAGGTATTTT
65 GCTGAGGTATTTT
54724095 CAATTACTGT
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
86 55 0.79
87 12 0.17
88 3 0.04
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (87 bp):
TTTTCAATTACTGTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTATTTTTGATTTCTGT
Found at i:54724299 original size:74 final size:74
Alignment explanation
Indices: 54724178--54724342 Score: 253
Period size: 74 Copynumber: 2.2 Consensus size: 74
54724168 CGATTTCTGT
*
54724178 TTTTCAATTTATGTTTTCAAAAATCAATGCATATTGCTAAAGGTGAATTGAGTCTCAGGTCGCAT
1 TTTTCAATTTATGTTTTCAAAAATCAATGCATATTGCTAAAGGTGAATTGAGCCTCAGGT--CAT
54724243 A-G-CGAGGTA
64 ACGCCGAGGTA
* *
54724252 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGTCATAC
1 TTTTCAATTTATGTTTTCAAAAATCAATGCATATTGCTAAAGGTGAATTGAGCCTCAGGTCATAC
54724317 GCCGAGGTA
66 GCCGAGGTA
**
54724326 TTTTCAATAGATGTTTT
1 TTTTCAATTTATGTTTT
54724343 TTTTCAATTT
Statistics
Matches: 84, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
72 4 0.05
73 1 0.01
74 79 0.94
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.38
Consensus pattern (74 bp):
TTTTCAATTTATGTTTTCAAAAATCAATGCATATTGCTAAAGGTGAATTGAGCCTCAGGTCATAC
GCCGAGGTA
Found at i:54724307 original size:392 final size:387
Alignment explanation
Indices: 54723509--54724333 Score: 947
Period size: 392 Copynumber: 2.1 Consensus size: 387
54723499 TCTGCGAGAA
54723509 GTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAAATCAACTCATA
1 GTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTC-AATTCTACTTTCAAAAAAATCAACTCATA
* * * * * *
54723574 TTGCGAAAGGTGAGTTGAGCGTTGGCTCACGTGTTGAGTCACTTTCAATTTCTGTTTTTATGTCT
65 CTGCGAAAGGTGAGTTGAGCCTAGG--CACATGCTGAGTCACTTTCAATTTCTGTTTTTATGTAT
*
54723639 GTTTTCTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGGGCACGCCGAGGTATTTTCA
128 GTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGGGCACGCCGAGGTATTTTCA
* * * *
54723704 AATTCTACTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGTGTTG
193 AATTCTACTTTCAAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTAGG--CACATGCTG
* * * *
54723769 AGTCACTTTCAATTTCTGTTTTTATGTCTGTTTTCTAAATCAACTCATATTGCGAGAGGTGAGTT
256 AGTCACTTTCAATTTCTGTTTTTATGTATGTTTTCAAAATCAACTCATATTGCGAAAGGTGAATT
*
54723834 GAGCCTCGAGGTACGCTGAGGTATTTTCAATTATTTTTTGTCAAAAAAATCAACTCATATTGCTA
321 GAGCCTCGAGGTACGCTGAGGTATTTTCAATTATTGTTTGTC-AAAAAATCAACTCATATTGCTA
54723899 GAG
385 GAG
* * ***
54723902 GTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACT-GTTTGGCAAAAATCAACTCATA
1 GTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAATT-CTACTTTCAAAAAAATCAACTCATA
* * ** *
54723966 CTGCGAGAGGTGAGTTGAGCCTCAGG-ACATGCTGAGGT-ATTTTTGATTTCTGTTTTTCAATTT
65 CTGCGAAAGGTGAGTTGAGCCT-AGGCACATGCTGA-GTCACTTTCAATTTCTGTTTTT--ATGT
* *
54724029 ATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTT
126 ATGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGGGCACGCCGAGGTATTT
* *** *
54724094 TC-AATTACT-GTTTGGCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGG-ACATG
190 TCAAATT-CTACTTTCAAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCT-AGGCACATG
* * * *
54724156 CTGAGGT-ATTTTCGATTTCTGTTTTTCAATTTATGTTTTCAAAAATCAA-TGCATATTGCTAAA
253 CTGA-GTCACTTTCAATTTCTGTTTTT--ATGTATGTTTTC-AAAATCAACT-CATATTGCGAAA
*
54724219 GGTGAATTGAGTCTC-AGGT-CGCATAGCGAGGTATTTTCAATT-TATGTTT-TC-AAAAATCAA
313 GGTGAATTGAGCCTCGAGGTACGC-T---GAGGTATTTTCAATTAT-TGTTTGTCAAAAAATCAA
*
54724279 TTCATATTGCTAGAG
373 CTCATATTGCTAGAG
* * *
54724294 GTGAATTGAGCCTCAGGTCATACGCCGAGGTATTTTCAAT
1 GTGAGTTGAGCCTCGGGGC--ACGCCGAGGTATTTTCAAT
54724334 AGATGTTTTT
Statistics
Matches: 369, Mismatches: 43, Indels: 39
0.82 0.10 0.09
Matches are distributed among these distances:
390 47 0.13
391 7 0.02
392 148 0.40
393 127 0.34
394 21 0.06
395 19 0.05
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.34
Consensus pattern (387 bp):
GTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAATTCTACTTTCAAAAAAATCAACTCATAC
TGCGAAAGGTGAGTTGAGCCTAGGCACATGCTGAGTCACTTTCAATTTCTGTTTTTATGTATGTT
TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGGGCACGCCGAGGTATTTTCAAAT
TCTACTTTCAAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTAGGCACATGCTGAGTCA
CTTTCAATTTCTGTTTTTATGTATGTTTTCAAAATCAACTCATATTGCGAAAGGTGAATTGAGCC
TCGAGGTACGCTGAGGTATTTTCAATTATTGTTTGTCAAAAAATCAACTCATATTGCTAGAG
Found at i:54724472 original size:176 final size:176
Alignment explanation
Indices: 54724270--54724629 Score: 413
Period size: 185 Copynumber: 2.0 Consensus size: 176
54724260 TTATGTTTTC
* * *
54724270 AAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCAGG-TCATACGCCGAGGTATTTTCAAT
1 AAAAAACAATTCATATTGCGAGAGGTGAATTGAGCCTC-GGCTCACACGCCGAGGTATTTTCAAT
* * * *
54724334 AGATGTT-TTTTTTCAATTTCTGCTTCTCAAA-A-AAAAAATTAACTCATATTGTGAGAGGTGAG
65 ---TGTTCTTTTTTCAATTTATGCTTCTCAAATACAAAAAATCAACTCATATTGCGAGAGGAGAG
* **
54724396 TTGAGCCTTGGCTTACACGCTGAGGTATTTTCAAGTTCTGCTTTTCAAAA
127 TTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAAATCTGCTTTTCAAAA
* * *
54724446 AAAAAACAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCGCACGCTGAGGTATTTTCAATT
1 AAAAAACAATTCATATTGCGAGAGGTGAATTGAGCCTCGGCTCACACGCCGAGGTATTTTCAATT
* *
54724511 TTTCGTTTTTTCAATTTATGCTTTTCAAATTCTACTTTCCAAAAAATCAACTCATATTGCGAGAG
66 GTTC-TTTTTTCAATTTATGCTTCTCAAA---TA-----CAAAAAATCAACTCATATTGCGAGAG
* * *
54724576 GAGAGTTGAGCCTTGGGTCACATGTTGAGGTATTTTCAAAATCTGCTTTTCAAA
122 GAGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAAATCTGCTTTTCAAA
54724630 TTAAGTTTCA
Statistics
Matches: 153, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
173 3 0.02
175 24 0.16
176 55 0.36
179 1 0.01
185 70 0.46
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (176 bp):
AAAAAACAATTCATATTGCGAGAGGTGAATTGAGCCTCGGCTCACACGCCGAGGTATTTTCAATT
GTTCTTTTTTCAATTTATGCTTCTCAAATACAAAAAATCAACTCATATTGCGAGAGGAGAGTTGA
GCCTTGGCTCACACGCTGAGGTATTTTCAAAATCTGCTTTTCAAAA
Found at i:54724475 original size:79 final size:80
Alignment explanation
Indices: 54724343--54724508 Score: 253
Period size: 79 Copynumber: 2.1 Consensus size: 80
54724333 TAGATGTTTT
* * * *
54724343 TTTTCAATTTCTGCTTCTCAAAAAAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGC
1 TTTTCAAGTTCTGCTTCTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC
*
54724408 TTACACGCTGAGGTA
66 TCACACGCTGAGGTA
* *
54724423 TTTTCAAGTTCTGCTTTTCAAAAAAAAAA-CAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGC
1 TTTTCAAGTTCTGCTTCTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC
*
54724487 TCGCACGCTGAGGTA
66 TCACACGCTGAGGTA
54724502 TTTTCAA
1 TTTTCAA
54724509 TTTTTCGTTT
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 51 0.65
80 27 0.35
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (80 bp):
TTTTCAAGTTCTGCTTCTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC
TCACACGCTGAGGTA
Found at i:54724699 original size:89 final size:90
Alignment explanation
Indices: 54724529--54724699 Score: 236
Period size: 89 Copynumber: 1.9 Consensus size: 90
54724519 TTTCAATTTA
* * * * *
54724529 TGCTTTTCAAATTCTACTTTCCAAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTTGGGT
1 TGCTTTTCAAATTCAACTTTCAAAAAAACCAACTCATATTGCGAGAGGAGAGTTGAGCCTTAGCT
* *
54724594 CACATGTTGAGGTATTTTCAAAATC
66 CACATGCTGAGCTATTTTCAAAATC
* * *
54724619 TGCTTTTCAAATT-AAGTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGTCTTAGCT
1 TGCTTTTCAAATTCAACTTTCAAAAAAACCAACTCATATTGCGAGAGGAGAGTTGAGCCTTAGCT
*
54724683 CACGTGCTGAGCTATTT
66 CACATGCTGAGCTATTT
54724700 CTGTTTTAAT
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
89 57 0.81
90 13 0.19
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (90 bp):
TGCTTTTCAAATTCAACTTTCAAAAAAACCAACTCATATTGCGAGAGGAGAGTTGAGCCTTAGCT
CACATGCTGAGCTATTTTCAAAATC
Found at i:54727337 original size:20 final size:22
Alignment explanation
Indices: 54727295--54727340 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
54727285 AAGTAGTATA
* *
54727295 TATATATTTTGACTATTTCATG
1 TATATATTTCGAATATTTCATG
54727317 TATATATTTCGAATA-TT-ATG
1 TATATATTTCGAATATTTCATG
54727337 TATA
1 TATA
54727341 GTATATTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 2 0.09
22 13 0.59
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.52
Consensus pattern (22 bp):
TATATATTTCGAATATTTCATG
Found at i:54731085 original size:4 final size:4
Alignment explanation
Indices: 54731066--54731101 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
54731056 TCATGATTGA
* *
54731066 CATT CATT TATG CATT CATT CATT CATT CATT CATT
1 CATT CATT CATT CATT CATT CATT CATT CATT CATT
54731102 GCATATCCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.22, G:0.03, T:0.50
Consensus pattern (4 bp):
CATT
Found at i:54735346 original size:52 final size:49
Alignment explanation
Indices: 54735261--54735627 Score: 431
Period size: 46 Copynumber: 7.6 Consensus size: 49
54735251 TTTGAGTACT
* **
54735261 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
54735307 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
54735359 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
54735405 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
54735451 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
54735503 TCTGATCAAGTTACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
54735555 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
54735601 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
54735628 GCTACACTTA
Statistics
Matches: 290, Mismatches: 17, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
46 155 0.53
48 1 0.00
49 2 0.01
50 1 0.00
52 131 0.45
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:54735609 original size:196 final size:196
Alignment explanation
Indices: 54735275--54735627 Score: 598
Period size: 196 Copynumber: 1.8 Consensus size: 196
54735265 ATCAAGTGAT
* * *
54735275 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
* * * *
54735340 ATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
54735405 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
54735470 G
196 G
* * *
54735471 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTTACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
*
54735536 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
54735601 TCTGATCAAGAGACAAAGTGATAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTG
54735628 GCTACACTTA
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
196 145 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (196 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
G
Found at i:54735635 original size:37 final size:37
Alignment explanation
Indices: 54735591--54735736 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
54735581 GATAGCTTTA
*
54735591 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
54735628 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
* *
54735665 GCTACACTTATGTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
54735702 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
54735737 ATCATACATA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 87 0.85
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:54735680 original size:150 final size:143
Alignment explanation
Indices: 54735261--54735632 Score: 373
Period size: 144 Copynumber: 2.6 Consensus size: 143
54735251 TTTGAGTACT
* * * * *
54735261 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-----
* * * * * * *
54735326 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTG---A-T--AAAGTGATAAGT
61 GAAAGTGATAAGT--GAGCTACGACTACACTGATCAGAACAAGTGACAAGTGAAAAGTGATAAGT
54735385 GATAGCTTCGGCTATACTTA
124 GATAGCTTCGGCTATACTTA
* *
54735405 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-----
* * * * * *
54735470 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTTACAAGTGAAAAGTGATAAGT
61 GAAAGTGATAAGTG--AGCTACGACTACACTGATCAGAACAAGTGACAAGTGAAAAGTGATAAGT
54735535 GATAGCTTCGGCTATACTTA
124 GATAGCTTCGGCTATACTTA
*
54735555 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC-AAAG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAG
54735619 TGATAAGTG-GCTAC
66 TGATAAGTGAGCTAC
54735633 ACTTATCTGA
Statistics
Matches: 210, Mismatches: 10, Indels: 19
0.88 0.04 0.08
Matches are distributed among these distances:
141 4 0.02
144 115 0.55
147 1 0.00
148 1 0.00
150 89 0.42
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (143 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAG
TGATAAGTGAGCTACGACTACACTGATCAGAACAAGTGACAAGTGAAAAGTGATAAGTGATAGCT
TCGGCTATACTTA
Found at i:54740687 original size:11 final size:11
Alignment explanation
Indices: 54740671--54740697 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
54740661 CATTTATTCG
54740671 AAAAAAAACAA
1 AAAAAAAACAA
54740682 AAAAAAAACAA
1 AAAAAAAACAA
54740693 AAAAA
1 AAAAA
54740698 GTAAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:54741319 original size:13 final size:13
Alignment explanation
Indices: 54741292--54741324 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
54741282 TGTATTTTCA
54741292 TATTAT-TATTAT
1 TATTATATATTAT
*
54741304 TATTATATATTTT
1 TATTATATATTAT
54741317 TATTATAT
1 TATTATAT
54741325 GCACATACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TATTATATATTAT
Found at i:54745427 original size:87 final size:85
Alignment explanation
Indices: 54745264--54745724 Score: 581
Period size: 87 Copynumber: 5.4 Consensus size: 85
54745254 CTCTTCTCAG
* *
54745264 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTAATTTCAATTTCTG
54745329 TCTTTAATTTCTACTTTTCC
66 TCTTTAATTTCTACTTTTCC
*
54745349 AAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGTTCACACGCTGAGGTAATTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--CACACGCTGAGGTAATTTCAATTTC
54745414 TGTCTTTAATTTCTACTTTTCC
64 TGTCTTTAATTTCTACTTTTCC
* * *
54745436 AAATTAACTCATATTGCGAGAGATGAGTTGAGCCTCGGTTCACACGCTGAGGTAATTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--CACACGCTGAGGTAATTTCAATTTC
*
54745501 TGTCTTTAATTTCTAGTTTTCC
64 TGTCTTTAATTTCTACTTTTCC
* * ** * * * * *
54745523 AAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTTGGGCCACATGCCGACGTATTTTCAAATTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAG-CACACGCTGAGGTAATTTCAATTTC
* * *
54745588 TATTTTTAATTTCTACTTTTCAA
64 TGTCTTTAATTTCTACTTTTC-C
* * *
54745611 AAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCAG--GACGCTGAGGT-ATTTCCAATTTCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTAATTT-CAATTTCT
* * *
54745673 GTTTTTAATTT-T-TTTTTCAA
65 GTCTTTAATTTCTACTTTTC-C
54745693 AAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAG
54745725 TCTTTTAATT
Statistics
Matches: 334, Mismatches: 37, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
82 37 0.11
83 4 0.01
84 24 0.07
85 37 0.11
87 197 0.59
88 35 0.10
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (85 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTAATTTCAATTTCTG
TCTTTAATTTCTACTTTTCC
Found at i:54747984 original size:18 final size:18
Alignment explanation
Indices: 54747939--54747984 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
54747929 ATTATATATA
*
54747939 TTATTACTA-TTTTATGT
1 TTATTACTATTTTTATCT
*
54747956 ATATATA-TATTTTTATCT
1 TTAT-TACTATTTTTATCT
54747974 TTATTACTATT
1 TTATTACTATT
54747985 GTGTTAATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (18 bp):
TTATTACTATTTTTATCT
Found at i:54748727 original size:49 final size:50
Alignment explanation
Indices: 54748666--54748771 Score: 151
Period size: 49 Copynumber: 2.1 Consensus size: 50
54748656 TGATACAAAT
54748666 TGATAATAGTTAGGTAAATGTTCCATGATAA-AGTTAGGTAAATGTTCCA
1 TGATAATAGTTAGGTAAATGTTCCATGATAAGAGTTAGGTAAATGTTCCA
* * * * *
54748715 TGATAATGGTTAGTTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGTTAGGTAAATGTTCCATGATAA-GAGTTAGGTAAATGTTCCA
54748766 TGATAA
1 TGATAA
54748772 GAATTTCATG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
49 28 0.56
51 22 0.44
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.38
Consensus pattern (50 bp):
TGATAATAGTTAGGTAAATGTTCCATGATAAGAGTTAGGTAAATGTTCCA
Found at i:54748758 original size:26 final size:25
Alignment explanation
Indices: 54748666--54748771 Score: 151
Period size: 25 Copynumber: 4.2 Consensus size: 25
54748656 TGATACAAAT
54748666 TGATAATAGTTAGGTAAATGTTCCA
1 TGATAATAGTTAGGTAAATGTTCCA
54748691 TGATAA-AGTTAGGTAAATGTTCCA
1 TGATAATAGTTAGGTAAATGTTCCA
* * *
54748715 TGATAATGGTTAGTTAAATGTTTCA
1 TGATAATAGTTAGGTAAATGTTCCA
* *
54748740 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-AGTTAGGTAAATGTTCCA
54748766 TGATAA
1 TGATAA
54748772 GAATTTCATG
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
24 24 0.32
25 28 0.37
26 23 0.31
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.38
Consensus pattern (25 bp):
TGATAATAGTTAGGTAAATGTTCCA
Found at i:54754272 original size:26 final size:26
Alignment explanation
Indices: 54754167--54754258 Score: 166
Period size: 26 Copynumber: 3.5 Consensus size: 26
54754157 TGATACAAAT
*
54754167 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
54754193 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
54754219 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
54754245 TGATAATGGGTTAG
1 TGATAATGGGTTAG
54754259 ATAAGAATTT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 65 1.00
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:54757204 original size:20 final size:22
Alignment explanation
Indices: 54757162--54757207 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
54757152 AAGTAGTATA
* *
54757162 TATATATTTTGACTATTTCATG
1 TATATATTTCGAATATTTCATG
54757184 TATATATTTCGAATA-TT-ATG
1 TATATATTTCGAATATTTCATG
54757204 TATA
1 TATA
54757208 GTATATTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 2 0.09
22 13 0.59
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.52
Consensus pattern (22 bp):
TATATATTTCGAATATTTCATG
Found at i:54758815 original size:29 final size:28
Alignment explanation
Indices: 54758782--54758846 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 28
54758772 ATCTTATAAT
* *
54758782 TTGATTATTTTAATACTACAAGGGCTAAA
1 TTGATTA-TTTAATAATACAAGGACTAAA
* *
54758811 TTGATCTATTTAATAATAGAAGGACTAAT
1 TTGAT-TATTTAATAATACAAGGACTAAA
54758840 TTGATTA
1 TTGATTA
54758847 GATACCAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 2 0.06
29 27 0.87
30 2 0.06
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (28 bp):
TTGATTATTTAATAATACAAGGACTAAA
Found at i:54760980 original size:2 final size:2
Alignment explanation
Indices: 54760967--54761017 Score: 66
Period size: 2 Copynumber: 25.5 Consensus size: 2
54760957 TCAATTCTTT
* * *
54760967 TA TA TA TG TA TA TA TA TA TA TA CA TA TA TA CA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
54761009 TG TA TA TA T
1 TA TA TA TA T
54761018 TATTTTTCAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (2 bp):
TA
Found at i:54764174 original size:12 final size:12
Alignment explanation
Indices: 54764157--54764199 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
54764147 CTCTTAAACC
54764157 TATTTAAATTAA
1 TATTTAAATTAA
54764169 TATTTATAATTAA
1 TATTTA-AATTAA
*
54764182 -ATTTTAAATAAA
1 TA-TTTAAATTAA
54764194 TATTTA
1 TATTTA
54764200 TTAATTATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 16 0.59
13 11 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
TATTTAAATTAA
Found at i:54765619 original size:9 final size:9
Alignment explanation
Indices: 54765603--54765635 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
54765593 ACTTACCTTC
54765603 ATTTTTTTT
1 ATTTTTTTT
*
54765612 -TATTTTTT
1 ATTTTTTTT
54765620 ATTTTTTTT
1 ATTTTTTTT
54765629 ATTTTTT
1 ATTTTTT
54765636 ATAAATGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:54765626 original size:16 final size:16
Alignment explanation
Indices: 54765605--54765637 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
54765595 TTACCTTCAT
54765605 TTTTTTTTATTTTTTA
1 TTTTTTTTATTTTTTA
54765621 TTTTTTTTATTTTTTA
1 TTTTTTTTATTTTTTA
54765637 T
1 T
54765638 AAATGAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTTTTTTATTTTTTA
Found at i:54776110 original size:21 final size:21
Alignment explanation
Indices: 54776086--54776141 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 21
54776076 TTAAATAATA
54776086 ATTAAAATTTATTAAGTATAT
1 ATTAAAATTTATTAAGTATAT
* *
54776107 ATT-AAGTAT-TTAAGTATAT
1 ATTAAAATTTATTAAGTATAT
54776126 ATATCAAAATTATATT
1 AT-T-AAAATT-TATT
54776142 TATCTTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
19 12 0.46
20 5 0.19
21 3 0.12
22 3 0.12
23 1 0.04
24 2 0.08
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (21 bp):
ATTAAAATTTATTAAGTATAT
Found at i:54788337 original size:33 final size:33
Alignment explanation
Indices: 54788300--54788369 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 33
54788290 TAATTTTTAC
* *
54788300 AAAA-TTT-GAAGGATTTAATGAGAATTTCTAAAA
1 AAAATTTTGGAAGG-TTTAATGAAAACTT-TAAAA
*
54788333 AAAATTTTGGTAGGTTTAATGAAAACTTTAAAA
1 AAAATTTTGGAAGGTTTAATGAAAACTTTAAAA
54788366 AAAA
1 AAAA
54788370 ATTTCAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
33 13 0.41
34 15 0.47
35 4 0.12
ACGTcount: A:0.50, C:0.03, G:0.14, T:0.33
Consensus pattern (33 bp):
AAAATTTTGGAAGGTTTAATGAAAACTTTAAAA
Found at i:54789487 original size:21 final size:18
Alignment explanation
Indices: 54789463--54789510 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
54789453 GTTTAGTGAC
*
54789463 TTAAATTATTTTATTAAATAA
1 TTAAATAATTTT-TT-AA-AA
54789484 TT-AATAATTTTTTAAAA
1 TTAAATAATTTTTTAAAA
54789501 TTAAATAATT
1 TTAAATAATT
54789511 AAAATATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 4 0.16
18 9 0.36
19 2 0.08
20 8 0.32
21 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TTAAATAATTTTTTAAAA
Found at i:54790087 original size:10 final size:10
Alignment explanation
Indices: 54790002--54790087 Score: 55
Period size: 10 Copynumber: 8.3 Consensus size: 10
54789992 ACAAAAAATT
54790002 AATTAAATAA
1 AATTAAATAA
*
54790012 ATTTAAATAAA
1 AATTAAAT-AA
*
54790023 AATCAAACTAA
1 AATTAAA-TAA
* **
54790034 AATCAAATTT
1 AATTAAATAA
*
54790044 AATTTAATAA
1 AATTAAATAA
**
54790054 AATTGAACCAA
1 AATT-AAATAA
* *
54790065 AACTAAATTA
1 AATTAAATAA
54790075 AATTAAATAA
1 AATTAAATAA
54790085 AAT
1 AAT
54790088 GGCTCAAATC
Statistics
Matches: 55, Mismatches: 18, Indels: 6
0.70 0.23 0.08
Matches are distributed among these distances:
10 32 0.58
11 22 0.40
12 1 0.02
ACGTcount: A:0.62, C:0.07, G:0.01, T:0.30
Consensus pattern (10 bp):
AATTAAATAA
Found at i:54793643 original size:12 final size:12
Alignment explanation
Indices: 54793618--54793655 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
54793608 TTCGTCCTTC
54793618 TTTCTTTTTT-T
1 TTTCTTTTTTCT
54793629 TTTCTTTTTTCT
1 TTTCTTTTTTCT
* *
54793641 TTTATTATTTCT
1 TTTCTTTTTTCT
54793653 TTT
1 TTT
54793656 ATTATATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 10 0.42
12 14 0.58
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTCTTTTTTCT
Found at i:54793656 original size:12 final size:12
Alignment explanation
Indices: 54793636--54793660 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
54793626 TTTTTTCTTT
54793636 TTTCTTTTATTA
1 TTTCTTTTATTA
54793648 TTTCTTTTATTA
1 TTTCTTTTATTA
54793660 T
1 T
54793661 ATTATTAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTCTTTTATTA
Found at i:54793667 original size:8 final size:8
Alignment explanation
Indices: 54793654--54793691 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
54793644 ATTATTTCTT
54793654 TTATTATA
1 TTATTATA
54793662 TTATTA-A
1 TTATTATA
*
54793669 GTATTATA
1 TTATTATA
54793677 TTATTATAA
1 TTATTAT-A
54793686 TTATTA
1 TTATTA
54793692 ATTTCTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
7 6 0.23
8 13 0.50
9 7 0.27
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (8 bp):
TTATTATA
Found at i:54793667 original size:20 final size:19
Alignment explanation
Indices: 54793629--54793667 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
54793619 TTCTTTTTTT
* *
54793629 TTTCTTTTTTCTTTTATTA
1 TTTCTTTTTTATATTATTA
54793648 TTTCTTTTATTATATTATTA
1 TTTCTTTT-TTATATTATTA
54793668 AGTATTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTCTTTTTTATATTATTA
Found at i:54797383 original size:27 final size:27
Alignment explanation
Indices: 54797353--54797425 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
54797343 ATGAAATGCT
*
54797353 CCGAAGAGCCACTATCACTAAGTTGCA
1 CCGAAGTGCCACTATCACTAAGTTGCA
* * *
54797380 CCGAAGTGCCTCTATCACTGATTTGCA
1 CCGAAGTGCCACTATCACTAAGTTGCA
* *
54797407 CCAAAGTGCCACAATCACT
1 CCGAAGTGCCACTATCACT
54797426 TTATGCGTTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.22
Consensus pattern (27 bp):
CCGAAGTGCCACTATCACTAAGTTGCA
Found at i:54798949 original size:15 final size:15
Alignment explanation
Indices: 54798912--54798955 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
54798902 ATACTAACAT
*
54798912 TATATAATTAAAATA
1 TATATTATTAAAATA
* *
54798927 TTTA-TATTATAATA
1 TATATTATTAAAATA
54798941 TATATTATTAAAATA
1 TATATTATTAAAATA
54798956 ATAATTAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TATATTATTAAAATA
Found at i:54798959 original size:21 final size:20
Alignment explanation
Indices: 54798935--54798979 Score: 51
Period size: 19 Copynumber: 2.3 Consensus size: 20
54798925 TATTTATATT
54798935 ATAATATATATT-ATTAAAATA
1 ATAATATA-ATTAATT-AAATA
54798956 ATAAT-TAATTAATTAAATA
1 ATAATATAATTAATTAAATA
54798975 A-AATA
1 ATAATA
54798980 AAATATCACC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
18 3 0.14
19 9 0.41
20 5 0.23
21 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
ATAATATAATTAATTAAATA
Found at i:54798962 original size:12 final size:13
Alignment explanation
Indices: 54798912--54798963 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
54798902 ATACTAACAT
54798912 TATATAATTAAAA
1 TATATAATTAAAA
*
54798925 TATTTATATTATAATA
1 TATATA-ATTA-AA-A
*
54798941 TATATTATTAAAA
1 TATATAATTAAAA
54798954 TA-ATAATTAA
1 TATATAATTAA
54798964 TTAATTAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
12 7 0.22
13 8 0.25
14 6 0.19
15 6 0.19
16 5 0.16
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TATATAATTAAAA
Found at i:54799216 original size:29 final size:29
Alignment explanation
Indices: 54799171--54799232 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
54799161 TCCTTTCCAC
**
54799171 CTTTGATTATTTCCACTTTAGTCCTTCAA
1 CTTTGATTATTTCCACTTTAACCCTTCAA
*
54799200 CTTTG-TTAATTTTCACTTTAACCCTTCAA
1 CTTTGATT-ATTTCCACTTTAACCCTTCAA
54799229 CTTT
1 CTTT
54799233 TGAATATTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.21, C:0.24, G:0.05, T:0.50
Consensus pattern (29 bp):
CTTTGATTATTTCCACTTTAACCCTTCAA
Found at i:54800197 original size:17 final size:17
Alignment explanation
Indices: 54800167--54800207 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
54800157 AAAATAATTA
54800167 AATAAATAATTTAAAAT
1 AATAAATAATTTAAAAT
*
54800184 TATAAA-AATATTAAAAT
1 AATAAATAAT-TTAAAAT
54800201 AATAAAT
1 AATAAAT
54800208 TAGTTCAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AATAAATAATTTAAAAT
Found at i:54800697 original size:19 final size:18
Alignment explanation
Indices: 54800664--54800702 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
54800654 AGTTCAATTT
54800664 TAAATTTAAATAACTCAAA
1 TAAATTTAAATAACT-AAA
54800683 TAAA-TTAAATAAACTAAA
1 TAAATTTAAAT-AACTAAA
54800701 TA
1 TA
54800703 TAAAAACTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAATTTAAATAACTAAA
Found at i:54800855 original size:18 final size:18
Alignment explanation
Indices: 54800818--54800861 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
54800808 CTTTCCCTTC
*
54800818 AAAATTTTTTATCCCC-A
1 AAAATTTTTGATCCCCAA
*
54800835 AAAATTTTTGCTCCCCTAA
1 AAAATTTTTGATCCCC-AA
54800854 AAAATTTT
1 AAAATTTT
54800862 ACTTTCTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 14 0.61
19 9 0.39
ACGTcount: A:0.36, C:0.20, G:0.02, T:0.41
Consensus pattern (18 bp):
AAAATTTTTGATCCCCAA
Found at i:54801903 original size:4 final size:4
Alignment explanation
Indices: 54801894--54801938 Score: 56
Period size: 4 Copynumber: 11.2 Consensus size: 4
54801884 TAAATTACCT
* *
54801894 TTTC TTTC TTTC GTTC TTTC TTTC TTTC TTTTC TTT- TTTT TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTTC TTTC TTTC TTTC T
54801939 GTTTGTTTCC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
3 3 0.08
4 29 0.81
5 4 0.11
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:54802846 original size:104 final size:104
Alignment explanation
Indices: 54802627--54802855 Score: 280
Period size: 104 Copynumber: 2.2 Consensus size: 104
54802617 AATCTTTGCC
* * *
54802627 CTAGATACGAAAATTCAGGATCCTAGAGACAAATGTTTTAGGGAAAACAAAGAGTGTGTGTAATA
1 CTAGATACGAAAA-TCAGGGTCCTAGAGACAAATATTTTAGGGAAAACAAAGAGTGTGTATAATA
54802692 TAGGTTACAAACATTTGAACATTGATCGATGGTCAAGATT
65 TAGGTTACAAACATTTGAACATTGATCGATGGTCAAGATT
* * * * * * * * *
54802732 CAAAAAACGAAAAGCAGGGTCCTGGTGATAAATATTTTAGGGAAAACGAAGAGTTTGTATAATAT
1 CTAGATACGAAAATCAGGGTCCTAGAGACAAATATTTTAGGGAAAACAAAGAGTGTGTATAATAT
* ** * *
54802797 AGGTTACAATCATTTGAATGTTGATCGATGTTCAAAGCTT
66 AGGTTACAAACATTTGAACATTGATCGATGGTC-AAGATT
54802837 -TAGATACGAAAATCAGGGT
1 CTAGATACGAAAATCAGGGT
54802856 TTGAGCAACA
Statistics
Matches: 102, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
104 87 0.85
105 15 0.15
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (104 bp):
CTAGATACGAAAATCAGGGTCCTAGAGACAAATATTTTAGGGAAAACAAAGAGTGTGTATAATAT
AGGTTACAAACATTTGAACATTGATCGATGGTCAAGATT
Found at i:54810928 original size:16 final size:15
Alignment explanation
Indices: 54810902--54810936 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
54810892 TGATGTGAAT
54810902 AATATAAAATATTAA
1 AATATAAAATATTAA
*
54810917 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
54810933 AATA
1 AATA
54810937 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:54811108 original size:20 final size:20
Alignment explanation
Indices: 54811051--54811110 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
54811041 AATACTACAT
54811051 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
54811070 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
54811093 AAATATGTACATAATATA
1 AAATATGTACATAATATA
54811111 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:54811206 original size:25 final size:25
Alignment explanation
Indices: 54811087--54811299 Score: 126
Period size: 23 Copynumber: 8.9 Consensus size: 25
54811077 TACGTGATAA
* *
54811087 TATTAAAAATATGTACATAATATAG
1 TATTAAAGATATATACATAATATAG
* * * *
54811112 TGTAAAAAATACATACATAATATA-
1 TATTAAAGATATATACATAATATAG
* *
54811136 -ATTAAA-ATATATACATAAGATAA
1 TATTAAAGATATATACATAATATAG
* * *
54811159 CATGTAAATATATATATAAATAATATAG
1 TAT-T-AA-AGATATATACATAATATAG
*
54811187 TATTAAAGATATATACATAAAATAG
1 TATTAAAGATATATACATAATATAG
* *
54811212 TA-T-AATATATATACGTAATATAG
1 TATTAAAGATATATACATAATATAG
* * *
54811235 AATT-TAGA-ATATACCTAATATA-
1 TATTAAAGATATATACATAATATAG
* * *
54811257 T-TAAAAGA-ATATATATAATATAA
1 TATTAAAGATATATACATAATATAG
*
54811280 TATT-AAGAAATATA-ATAATA
1 TATTAAAGATATATACATAATA
54811300 ACAAAAAAAG
Statistics
Matches: 149, Mismatches: 28, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
21 1 0.01
22 29 0.19
23 46 0.31
24 12 0.08
25 39 0.26
26 4 0.03
27 2 0.01
28 16 0.11
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
TATTAAAGATATATACATAATATAG
Found at i:54811297 original size:23 final size:25
Alignment explanation
Indices: 54811254--54811299 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
54811244 TATACCTAAT
54811254 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
54811279 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
54811300 ACAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:54811819 original size:30 final size:30
Alignment explanation
Indices: 54811778--54811876 Score: 180
Period size: 30 Copynumber: 3.3 Consensus size: 30
54811768 TAGGTACAAG
54811778 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
54811808 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
54811838 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
54811868 TGGTGGTGG
1 TGGTGGTGG
54811877 CAAAGGCTAG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 65 1.00
ACGTcount: A:0.17, C:0.06, G:0.51, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:54812707 original size:87 final size:87
Alignment explanation
Indices: 54812518--54812825 Score: 304
Period size: 88 Copynumber: 3.5 Consensus size: 87
54812508 TACTCGGCAT
* * * * *
54812518 GTGATCCCGA-GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAGACATTAG-AA
1 GTGA-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAAC-AGAAATTTGAAA
* ** *
54812581 ATAGAAATTGAAAATAGCTCAGTAC
63 AAAGATTTTGAAAATACCTCAGTAC
* * *
54812606 GTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACA-AAATTTGTAAAAC
1 GTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAGAAATTTG-AAAAA
* *
54812670 AGATTTTGAAAATACCTCGGTAT
65 AGATTTTGAAAATACCTCAGTAC
* * * * *
54812693 GTGACCCGAGGCTCAACTCATTTATCGTAATATGAGTTGATTCTTGAAAAGCATAAA-TTGAAAA
1 GTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT-TTTAAAA-CAGAAATTTGAAAA
*
54812757 AACATTAATTGAAAATACCTCAG--C
64 AAGATT--TTGAAAATACCTCAGTAC
* *
54812781 GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
54812826 TGATGAACAG
Statistics
Matches: 183, Mismatches: 29, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
85 5 0.03
86 1 0.01
87 72 0.39
88 83 0.45
89 5 0.03
90 17 0.09
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (87 bp):
GTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAGAAATTTGAAAAAA
GATTTTGAAAATACCTCAGTAC
Found at i:54812816 original size:88 final size:88
Alignment explanation
Indices: 54812586--54812824 Score: 281
Period size: 87 Copynumber: 2.7 Consensus size: 88
54812576 TAGAAATAGA
* * * *
54812586 AATTGAAAATAGCTCAGTACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAG-ACGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG
* *
54812651 AAAACAAAATTTGTAAAACAGATT
65 AAAACAAAATTTGTAAAAAACATT
* * * * *
54812675 --TTGAAAATACCTCGGTATGTGACCCGAGGCTCAACTCATTTATCGTAATATGAGTTGATTCTT
1 AATTGAAAATACCTCAG-ACGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT-TT
54812738 GAAAAGCATAAA-TTG-AAAAAACATT
64 GAAAA-CA-AAATTTGTAAAAAACATT
* *
54812763 AATTGAAAATACCTCAG-CGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AATTGAAAATACCTCAGACGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
54812825 TTGATGAACA
Statistics
Matches: 127, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
87 54 0.43
88 51 0.40
89 5 0.04
90 17 0.13
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (88 bp):
AATTGAAAATACCTCAGACGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGA
AAACAAAATTTGTAAAAAACATT
Found at i:54812819 original size:175 final size:174
Alignment explanation
Indices: 54812510--54812825 Score: 417
Period size: 175 Copynumber: 1.8 Consensus size: 174
54812500 TGATTCTTTA
* *
54812510 CTCGGCATGTGATCCCGAGCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAGACA
1 CTCGGCATGTGATCCCGAGCTCAACTCATTTATCGCAATATGAATTGACTCTTGAAAACTAGACA
* * * * *
54812575 TTAGAAATAGAAATTGAAAATAGCTCAGTACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATG
66 TTAGAAAAACAAATTGAAAATACCTCAG-ACGTGACCCAAGGCTCAACTCACCTCTCGCAATATG
54812640 AGTTGATTTTTAAAACAAAATTTGTAAAACAGATTTTGAAAATAC
130 AGTTGATTTTTAAAACAAAATTTGTAAAACAGATTTTGAAAATAC
* * * *
54812685 CTCGGTATGTGA-CCCGAGGCTCAACTCATTTATCGTAATATGAGTTGATTCTTGAAAAGCATA-
1 CTCGGCATGTGATCCCGA-GCTCAACTCATTTATCGCAATATGAATTGACTCTTGAAAA-C-TAG
* *
54812748 A-ATT-GAAAAAACATTAATTGAAAATACCTCAG-CGTGCCCCGAGGCTCAACTCACCTCTCGCA
63 ACATTAG-AAAAACA--AATTGAAAATACCTCAGACGTGACCCAAGGCTCAACTCACCTCTCGCA
54812810 ATATGAGTTGATTTTT
125 ATATGAGTTGATTTTT
54812826 TGATGAACAG
Statistics
Matches: 122, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
174 6 0.05
175 96 0.79
176 2 0.02
177 18 0.15
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (174 bp):
CTCGGCATGTGATCCCGAGCTCAACTCATTTATCGCAATATGAATTGACTCTTGAAAACTAGACA
TTAGAAAAACAAATTGAAAATACCTCAGACGTGACCCAAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTAAAACAAAATTTGTAAAACAGATTTTGAAAATAC
Found at i:54813027 original size:78 final size:76
Alignment explanation
Indices: 54812754--54813303 Score: 558
Period size: 77 Copynumber: 7.2 Consensus size: 76
54812744 CATAAATTGA
** *
54812754 AAAAACATTAATTGAAAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAACTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
54812818 TGA-TTTTTTG
66 TGATTTTTTTG
** * * * *
54812828 ATGAACAGAAATT-AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAACATAAGT
1 AAAAACAGAAATTGAAAACTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
54812892 TGATTTTTTTG
66 TGATTTTTTTG
*
54812903 AAAAACAGAAGTTGAAAAC-ACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAACTACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGA
54812967 GTTGATTTTTTTG
64 GTTGATTTTTTTG
* * *
54812980 ACAAACAGAAATTGAAAACTACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAACTACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGA
54813045 GTTGA-TTTTTTG
64 GTTGATTTTTTTG
*
54813057 AAAAACAGAAATTGAAAAC-ACCTCAGCATGT---GAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAACTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
54813118 TGATTTTTGAAAAACAT-
66 TGATTTTT-------TTG
* * ** * *
54813135 AAATTAAGCAGAAATTGAAAA-TACCTCAACGGGTCTTGAAGCTCAACTCACCTCTCACAATATG
1 AAA--AA-CAGAAATTGAAAACTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
54813199 AGTTGA-TTTTTTG
63 AGTTGATTTTTTTG
** * ** * ** *
54813212 ---ATGATAAATTGAAAA-TACCTCAATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAACTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
54813273 TGA-TTTTTTG
66 TGATTTTTTTG
54813283 AATTAAAACAGAAATTGAAAA
1 -A--AAAACAGAAATTGAAAA
54813304 TAGAAATGAA
Statistics
Matches: 405, Mismatches: 43, Indels: 53
0.81 0.09 0.11
Matches are distributed among these distances:
71 93 0.23
72 5 0.01
73 4 0.01
74 53 0.13
75 28 0.07
76 17 0.04
77 95 0.23
78 50 0.12
79 1 0.00
80 2 0.00
81 22 0.05
83 4 0.01
84 31 0.08
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (76 bp):
AAAAACAGAAATTGAAAACTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTG
Found at i:54813179 original size:155 final size:155
Alignment explanation
Indices: 54812788--54813389 Score: 515
Period size: 155 Copynumber: 3.9 Consensus size: 155
54812778 AGCGTGCCCC
*
54812788 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG---------ATGAACAGAAATT-AA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAAAATTAACAGAAATTGAA
* * * *
54812843 AACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAACATAAGTTGATTTTTTTGAAAAA
65 AACTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
* *
54812908 CAGAAGTTGAAAACACCTCAGCGTGT
130 CAGAAATTGAAAACACCTCAGCATGT
***
54812934 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--TTGAC---A--AACAGAAAT
1 -----GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAATTAACAGAAAT
* **
54812992 TGAAAACTACCTCAGCGTGT-AAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
61 TGAAAACTACCTCAACGTGTCTTG--AA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
54813055 TGAAAAACAGAAATTGAAAACACCTCAGCATGT
123 TGAAAAACAGAAATTGAAAACACCTCAGCATGT
54813088 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTAAGCAGAAATTGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-AAATTAA-CAGAAATTGA
* *
54813153 AAA-TACCTCAACGGGTCTTGAAGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTTG---A
64 AAACTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
** * * *
54813213 TGATAAATTGAAAATACCTCAATGTGACT-T
129 ACAGAAATTGAAAACACCTC-A-G-CA-TGT
* *
54813243 GAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAATAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-A--AAAACA-AAATT---AACAGA
* * * * *
54813308 AA-TGAAAAAC-AACTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT
58 AATTG-AAAACTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * *
54813369 TTGAAACACATAAATTAAAAA
122 TTGAAAAACAGAAATTGAAAA
54813390 AAAAAGAAAT
Statistics
Matches: 381, Mismatches: 34, Indels: 60
0.80 0.07 0.13
Matches are distributed among these distances:
149 38 0.10
150 5 0.01
151 35 0.09
152 28 0.07
153 18 0.05
154 39 0.10
155 99 0.26
156 9 0.02
157 14 0.04
158 14 0.04
159 46 0.12
160 10 0.03
161 13 0.03
162 2 0.01
163 11 0.03
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (155 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAATTAACAGAAATTGAAA
ACTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAC
AGAAATTGAAAACACCTCAGCATGT
Found at i:54813677 original size:71 final size:72
Alignment explanation
Indices: 54813498--54813688 Score: 206
Period size: 71 Copynumber: 2.6 Consensus size: 72
54813488 CTCAGCGTGT
* ** *
54813498 CTCTCGCAATATGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAATATTTCAGCGTGTCTTGA
1 CTCTCGCAATATGAGTTGATTTTTTTGA-AACAA-A-AA-TTGAAAATACCTCAACG-GTCTTGA
*
54813563 GGCTCAATTCAC
61 GGCTCAACTCAC
*** *
54813575 CTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAAC-GTCTTGAGGCTC
1 CTCTCGCAATATGAGTTGATTTTTTTGAAACAAAAATTGAAAATACCTCAACGGTCTTGAGGCTC
54813639 AACTCAC
66 AACTCAC
* * *
54813646 TTCT-GCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAAA
1 CTCTCGCAATATGAGTTGA-TTTTTTTGAAACAAAAATTGAAAA
54813689 AACAAAAATT
Statistics
Matches: 97, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
70 14 0.14
71 39 0.40
73 12 0.12
74 2 0.02
75 1 0.01
76 4 0.04
77 25 0.26
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.36
Consensus pattern (72 bp):
CTCTCGCAATATGAGTTGATTTTTTTGAAACAAAAATTGAAAATACCTCAACGGTCTTGAGGCTC
AACTCAC
Found at i:54813803 original size:99 final size:99
Alignment explanation
Indices: 54813686--54813969 Score: 374
Period size: 99 Copynumber: 2.9 Consensus size: 99
54813676 CATAAATTAA
* * * * *
54813686 AAAAACAAAAATTTAAAATACCTCAGCGTGTCTTGAGGCTCAACTTACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
54813751 GA-TTTGAAAAGCAGAATTTGTAAGGAAAAAATTG
66 GATTTTGAAAAGCAGAAATT-AAAAGAAAAAATTG
* *
54813785 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGCAATATGAGTT
1 AAAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
54813850 GATTTTTGAAAAACAGAAATTAAAAGCAGAAATTG
66 GA-TTTTGAAAAGCAGAAATTAAAAGAAAAAATTG
* * *
54813885 -AAAACAGAAATTAAAAATACCTCGGCATGCCCTGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
54813949 GATTTTTGAAAAGCATAAATT
66 GA-TTTTGAAAAGCAGAAATT
54813970 GAAATTACCT
Statistics
Matches: 164, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
99 139 0.85
100 10 0.06
101 15 0.09
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (99 bp):
AAAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTGAAAAGCAGAAATTAAAAGAAAAAATTG
Done.