Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 179 of 250
Found at i:56801265 original size:18 final size:18
Alignment explanation
Indices: 56801231--56801264 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
56801221 TAACAAATTA
56801231 TTTTATAAATTTATATAT
1 TTTTATAAATTTATATAT
56801249 TTTTAT-AA-TTATATAT
1 TTTTATAAATTTATATAT
56801265 AATATTCGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 2 0.12
18 6 0.38
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTATAAATTTATATAT
Found at i:56814799 original size:17 final size:17
Alignment explanation
Indices: 56814779--56814838 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
56814769 AGCAATTTAA
56814779 TTTTTTCTTTTATGTTC
1 TTTTTTCTTTTATGTTC
** **
56814796 TTTTAACTTTCCT-TT-
1 TTTTTTCTTTTATGTTC
56814811 TTTTTTCTTTTATGTTC
1 TTTTTTCTTTTATGTTC
* *
56814828 CTTTCTCTTTT
1 TTTTTTCTTTT
56814839 CCCCATTTTC
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
15 9 0.29
16 4 0.13
17 18 0.58
ACGTcount: A:0.07, C:0.17, G:0.03, T:0.73
Consensus pattern (17 bp):
TTTTTTCTTTTATGTTC
Found at i:56820426 original size:1 final size:1
Alignment explanation
Indices: 56820420--56820445 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
56820410 GAATATGTTG
56820420 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
56820446 CCAGAAAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:56829315 original size:32 final size:32
Alignment explanation
Indices: 56829290--56829352 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
56829280 AAATTGTCCA
*
56829290 AAACTTTA-ATAACATTTCTTATAAATAATAT
1 AAACTTTACATAACATTTCTTATAAATTATAT
*
56829321 AAATTTTATCATAACATTTCTTATAAATTATA
1 AAACTTTA-CATAACATTTCTTATAAATTATA
56829353 ACATTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 7 0.25
33 21 0.75
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (32 bp):
AAACTTTACATAACATTTCTTATAAATTATAT
Found at i:56832408 original size:28 final size:28
Alignment explanation
Indices: 56832368--56832446 Score: 106
Period size: 28 Copynumber: 2.8 Consensus size: 28
56832358 GCAATCAAAT
* *
56832368 ATGGCACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
56832396 ATGGCACTTAGTGTGC-AAGATATTGAGA
1 ATGGCACTTAGTGTGCGAA-ATATTGAGA
* *
56832424 ATGACACTTAGTGTGTGAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
56832447 CGAATGATTC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
27 2 0.04
28 41 0.91
29 2 0.04
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:56833807 original size:5 final size:6
Alignment explanation
Indices: 56833787--56833830 Score: 65
Period size: 6 Copynumber: 7.5 Consensus size: 6
56833777 TTGTGTGTTC
56833787 TTTATTT TTTATT TTTATT TTTATT TTTA-T TTTA-T TTTATT TTT
1 TTTA-TT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
56833831 TCAAAGTATG
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
5 10 0.28
6 22 0.61
7 4 0.11
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:56835017 original size:12 final size:12
Alignment explanation
Indices: 56835000--56835025 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
56834990 ATCAAAGAAA
56835000 AATAAAATAAAT
1 AATAAAATAAAT
56835012 AATAAAATAAAT
1 AATAAAATAAAT
56835024 AA
1 AA
56835026 CAATAATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AATAAAATAAAT
Found at i:56837998 original size:23 final size:23
Alignment explanation
Indices: 56837972--56838048 Score: 136
Period size: 23 Copynumber: 3.3 Consensus size: 23
56837962 ATAAGTGCCA
56837972 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
56837995 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
56838018 CACTTGAAATGTAGCCGAAGCTAC
1 CAC-TGATATGTAGCCGAAGCTAC
56838042 CACTGAT
1 CACTGAT
56838049 CAATAACACT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
23 29 0.57
24 22 0.43
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:56838034 original size:24 final size:24
Alignment explanation
Indices: 56837979--56838045 Score: 118
Period size: 24 Copynumber: 2.8 Consensus size: 24
56837969 CCACACTGAT
*
56837979 ATGTAGCCGAAGCTACCAC-TGAT
1 ATGTAGCCGAAGCTACCACTTGAA
56838002 ATGTAGCCGAAGCTACCACTTGAA
1 ATGTAGCCGAAGCTACCACTTGAA
56838026 ATGTAGCCGAAGCTACCACT
1 ATGTAGCCGAAGCTACCACT
56838046 GATCAATAAC
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
23 19 0.45
24 23 0.55
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (24 bp):
ATGTAGCCGAAGCTACCACTTGAA
Found at i:56838300 original size:18 final size:17
Alignment explanation
Indices: 56838274--56838312 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
56838264 ATTTTCCTTC
56838274 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
56838291 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
56838309 CACA
1 CACA
56838313 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:56845348 original size:23 final size:23
Alignment explanation
Indices: 56845322--56845397 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
56845312 ATAAGTGCCA
56845322 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
56845345 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
56845368 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
56845391 CACTGAT
1 CACTGAT
56845398 CAATAACACT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:56845646 original size:18 final size:17
Alignment explanation
Indices: 56845620--56845658 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
56845610 ATTTTCCTTC
56845620 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
56845637 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
56845655 CACA
1 CACA
56845659 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:56847052 original size:25 final size:26
Alignment explanation
Indices: 56847024--56847074 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
56847014 CTTATTTCAT
*
56847024 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
56847049 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
56847075 AAACAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:56847066 original size:26 final size:24
Alignment explanation
Indices: 56847036--56847084 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
56847026 AATAAAAAAT
*
56847036 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
56847062 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
56847085 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:56853109 original size:16 final size:16
Alignment explanation
Indices: 56853085--56853121 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
56853075 AATGAGCACT
*
56853085 TTCAGACTTATCACGC
1 TTCAAACTTATCACGC
56853101 TTCAAACTTATCACGC
1 TTCAAACTTATCACGC
56853117 TTCAA
1 TTCAA
56853122 CCTTTCTTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (16 bp):
TTCAAACTTATCACGC
Found at i:56869472 original size:20 final size:19
Alignment explanation
Indices: 56869447--56869493 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
56869437 CCTAATTCTA
56869447 AAAAATTTAAAGAAATATAT
1 AAAAATTTAAA-AAATATAT
*
56869467 AAAAATTTTCAAAAATATAT
1 AAAAA-TTTAAAAAATATAT
56869487 AAAAATT
1 AAAAATT
56869494 AACACTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 18 0.72
21 5 0.20
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (19 bp):
AAAAATTTAAAAAATATAT
Found at i:56869648 original size:23 final size:24
Alignment explanation
Indices: 56869622--56869666 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
56869612 ATAGTTTGCC
*
56869622 TTATTAAAAAAC-TAAATATATAT
1 TTATCAAAAAACATAAATATATAT
* *
56869645 TTATCAAACAACATAATTATAT
1 TTATCAAAAAACATAAATATAT
56869667 TCATTGTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 10 0.56
24 8 0.44
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (24 bp):
TTATCAAAAAACATAAATATATAT
Found at i:56875166 original size:3 final size:3
Alignment explanation
Indices: 56875108--56875152 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
56875098 TACCAAAAAC
56875108 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
56875153 GCAAGGAATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:56875264 original size:3 final size:3
Alignment explanation
Indices: 56875251--56875430 Score: 73
Period size: 3 Copynumber: 59.3 Consensus size: 3
56875241 TATACTATAG
* * * * *
56875251 ATA ACA ATA ATA ATAA ATA ATA GTA AGA AAA ATA ATA ATA ATA ACA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
56875297 ATA ATG GT- ACA AT- ATA ATA ATA GTA A-A A-A AGTA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA
* * * * * *
56875339 ATG ATA GAAA ATA ATA ATA GA-A CTG ATA ATA ATA ATG ATA ATG ATA
1 ATA ATA -ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
56875385 ATA ATA GTTT ATA AAA ATA ATA ATAA ATA ATG ATA TTA ATA TATA A
1 ATA ATA -ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA -ATA A
56875431 ATAGAAAAAG
Statistics
Matches: 126, Mismatches: 40, Indels: 22
0.67 0.21 0.12
Matches are distributed among these distances:
2 6 0.05
3 105 0.83
4 15 0.12
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:56875353 original size:13 final size:13
Alignment explanation
Indices: 56875256--56875360 Score: 58
Period size: 13 Copynumber: 8.0 Consensus size: 13
56875246 TATAGATAAC
56875256 AATAATAATA-AA
1 AATAATAATAGAA
* *
56875268 TAATAGTAAGA-AA
1 -AATAATAATAGAA
*
56875281 AATAATAATA-AT
1 AATAATAATAGAA
* *
56875293 AACAATAATGGTACA
1 AATAATAATAG-A-A
56875308 ATATAATAATAGTAA
1 A-ATAATAATAG-AA
*
56875323 AA-AAGTAATAG-T
1 AATAA-TAATAGAA
*
56875335 AATAATGATAGAA
1 AATAATAATAGAA
56875348 AATAATAATAGAA
1 AATAATAATAGAA
56875361 CTGATAATAA
Statistics
Matches: 71, Mismatches: 14, Indels: 14
0.72 0.14 0.14
Matches are distributed among these distances:
12 24 0.34
13 26 0.37
14 8 0.11
15 3 0.04
16 10 0.14
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.26
Consensus pattern (13 bp):
AATAATAATAGAA
Found at i:56877124 original size:43 final size:44
Alignment explanation
Indices: 56877066--56877288 Score: 157
Period size: 43 Copynumber: 4.9 Consensus size: 44
56877056 ATCAGAATTA
** * *
56877066 GTAACTTCAACCTGCTCCACTGCAAATTCAGGGAGATAAGGTTT
1 GTAACTTTGACCTGCTCCACTACAACTTCAGGGAGATAAGGTTT
* * * *
56877110 GTGTA-TTT-TCCTGCTCCACTACAACTTCAAGGAGATAAGATTT
1 GT-AACTTTGACCTGCTCCACTACAACTTCAGGGAGATAAGGTTT
* * *
56877153 GTAACTTTGACTTGCTCCACTACAACTTCAGGGAAACAAGGTTT
1 GTAACTTTGACCTGCTCCACTACAACTTCAGGGAGATAAGGTTT
* * *
56877197 GTAA-TTTGTAGCTCTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTT
1 GTAACTTTG-A---C----CTGCTCCACTACAACTTCAGGGAGATAAGGTTT
* * * *
56877248 GCTATCTTT-AGTCTGCTCCATTGCAACTTCAGGGAGATAAG
1 G-TAACTTTGA-CCTGCTCCACTACAACTTCAGGGAGATAAG
56877289 ATCTGTAATT
Statistics
Matches: 141, Mismatches: 25, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
42 1 0.01
43 39 0.28
44 38 0.27
45 28 0.20
47 1 0.01
51 29 0.21
52 2 0.01
53 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (44 bp):
GTAACTTTGACCTGCTCCACTACAACTTCAGGGAGATAAGGTTT
Found at i:56877304 original size:95 final size:96
Alignment explanation
Indices: 56877120--56877347 Score: 248
Period size: 95 Copynumber: 2.4 Consensus size: 96
56877110 GTGTATTTTC
* * *
56877120 CTGCTCCACTACAACTTCAAGGAGATAAGATTTG-TAACTTTGACTTGCTCCACTACAACTTCAG
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTGACTTGCTCCACTACAACTTCAG
* * *
56877184 GGAAACAAGGTTTGTAATTTGTAGC-TCTAAT
66 GGAAACAAGATCTGTAATTTATAGCTTC-AAT
* * * *
56877215 CTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATCTTT-AGTCTGCTCCATTGCAACTTCA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTGACT-TGCTCCACTACAACTTCA
* *
56877279 GGGAGATAAGATCTGTAA-TTATAGCTTCAAT
65 GGGAAACAAGATCTGTAATTTATAGCTTCAAT
* * * * * *
56877310 TTGTTCCATTGCAACTTCAGGAAAATAAGATTCGCTAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
56877348 TATAACCTCA
Statistics
Matches: 111, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
95 73 0.66
96 38 0.34
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (96 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTGACTTGCTCCACTACAACTTCAG
GGAAACAAGATCTGTAATTTATAGCTTCAAT
Found at i:56877359 original size:50 final size:50
Alignment explanation
Indices: 56877264--56877359 Score: 124
Period size: 50 Copynumber: 1.9 Consensus size: 50
56877254 TTTAGTCTGC
* * * *
56877264 TCCATTGCAACTTCAGGGAGATAAGATCTGTAATTATAGCTTCAATTTGT
1 TCCATTGCAACTTCAGGAAAATAAGATCTGTAATTATAACCTCAATTTGT
56877314 TCCATTGCAACTTCAGGAAAATAAGAT-TCGCT-ATTATAACCTCAAT
1 TCCATTGCAACTTCAGGAAAATAAGATCT-G-TAATTATAACCTCAAT
56877360 CCATTCTACT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
49 1 0.03
50 38 0.95
51 1 0.03
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (50 bp):
TCCATTGCAACTTCAGGAAAATAAGATCTGTAATTATAACCTCAATTTGT
Found at i:56886623 original size:26 final size:26
Alignment explanation
Indices: 56886592--56886699 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
56886582 TGAAATGCCC
56886592 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
56886618 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* * *
56886644 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
56886670 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
56886696 ATCA
1 ATCA
56886700 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
25 2 0.03
26 72 0.97
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:56888791 original size:26 final size:26
Alignment explanation
Indices: 56888755--56888807 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
56888745 TGGTGGCGCC
*
56888755 TATATAAGTAAAGACATTAAAAATTT
1 TATATAAGTAAAAACATTAAAAATTT
56888781 TATATAAGTAAAAACATTAAAAATTT
1 TATATAAGTAAAAACATTAAAAATTT
56888807 T
1 T
56888808 CATTTTAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.36
Consensus pattern (26 bp):
TATATAAGTAAAAACATTAAAAATTT
Found at i:56889379 original size:16 final size:17
Alignment explanation
Indices: 56889330--56889379 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
56889320 TTTTTCTTTT
56889330 TCTTTT-TTGTTTCTGC
1 TCTTTTGTTGTTTCTGC
*
56889346 TCTACTATGTTGTTTCTGC
1 TCT--TTTGTTGTTTCTGC
56889365 TCTTTTGTT-TTTCTG
1 TCTTTTGTTGTTTCTG
56889380 TTTGCAGGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 9 0.31
17 5 0.17
18 2 0.07
19 13 0.45
ACGTcount: A:0.04, C:0.18, G:0.14, T:0.64
Consensus pattern (17 bp):
TCTTTTGTTGTTTCTGC
Found at i:56892477 original size:25 final size:25
Alignment explanation
Indices: 56892426--56892478 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
56892416 AGCTCTTTCA
* * **
56892426 AGCCATATAACGGGAAGCTTATGTG
1 AGCCATATAACAGAAAGCTTACATG
*
56892451 AGCCATGTAACAGAAAGCTTACATG
1 AGCCATATAACAGAAAGCTTACATG
56892476 AGC
1 AGC
56892479 TAATATCGAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (25 bp):
AGCCATATAACAGAAAGCTTACATG
Found at i:56892511 original size:25 final size:24
Alignment explanation
Indices: 56892483--56892565 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 24
56892473 ATGAGCTAAT
56892483 ATCGAGAAACTTCAGAGAGCCATTA
1 ATCGAGAAAC-TCAGAGAGCCATTA
* *
56892508 ATCGA-AAAGCTCATACGAGCCATAA
1 ATCGAGAAA-CTCAGA-GAGCCATTA
* * *
56892533 AACGGGAAACTCAAGAAAGCCATTA
1 ATCGAGAAACTC-AGAGAGCCATTA
*
56892558 ATTGAGAA
1 ATCGAGAA
56892566 GCTCGTGAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
24 7 0.16
25 32 0.73
26 5 0.11
ACGTcount: A:0.45, C:0.19, G:0.19, T:0.17
Consensus pattern (24 bp):
ATCGAGAAACTCAGAGAGCCATTA
Found at i:56893097 original size:16 final size:16
Alignment explanation
Indices: 56893076--56893130 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
56893066 GTTTGGTTCA
*
56893076 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
56893092 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
56893108 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
56893124 CTGTAAT
1 CTGTAAT
56893131 CAGTAATTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.29
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:56893204 original size:44 final size:46
Alignment explanation
Indices: 56893112--56893205 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
56893102 ATAGAGCTGT
*
56893112 AATGGAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATCAGTAATTCAACTGTTTGGTTGAATGG
***
56893158 AATGGAATAGAACTGTAAT-AGT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATCAGTAATTCAACTGTTTGGTTGAATGG
56893202 AATG
1 AATG
56893206 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 23 0.52
45 3 0.07
46 18 0.41
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.35
Consensus pattern (46 bp):
AATGGAATAGAACTGTAATCAGTAATTCAACTGTTTGGTTGAATGG
Found at i:56893402 original size:18 final size:18
Alignment explanation
Indices: 56893379--56893414 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
56893369 AATTATTATT
56893379 AAATATAATTTAATAAAA
1 AAATATAATTTAATAAAA
56893397 AAATATAATTTAATAAAA
1 AAATATAATTTAATAAAA
56893415 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATATAATTTAATAAAA
Found at i:56897598 original size:14 final size:14
Alignment explanation
Indices: 56897581--56897607 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
56897571 ATTATTTTCT
56897581 TTATTTTATCATCA
1 TTATTTTATCATCA
56897595 TTATTTTATCATC
1 TTATTTTATCATC
56897608 TTTCCAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTTTATCATCA
Found at i:56899261 original size:29 final size:30
Alignment explanation
Indices: 56899202--56899266 Score: 78
Period size: 31 Copynumber: 2.2 Consensus size: 30
56899192 AATCTCAAAA
* * **
56899202 TTATATATGAACTTTGTTTTAATGTGTAATT
1 TTATATATAAACTTTGATTT-ATGTACAATT
56899233 TTATATATAAACTTTGATTT-TGTACAATT
1 TTATATATAAACTTTGATTTATGTACAATT
56899262 TTATA
1 TTATA
56899267 CATGAAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 12 0.40
31 18 0.60
ACGTcount: A:0.32, C:0.05, G:0.09, T:0.54
Consensus pattern (30 bp):
TTATATATAAACTTTGATTTATGTACAATT
Found at i:56899394 original size:25 final size:25
Alignment explanation
Indices: 56899338--56899394 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
56899328 ATTTATATTT
* *
56899338 ATATATTACATATATAAATAATTAA
1 ATATATTAAATATAAAAATAATTAA
*
56899363 ATTTATTAAATATAAAAATAAATT-A
1 ATATATTAAATATAAAAAT-AATTAA
56899388 ATATATT
1 ATATATT
56899395 TATTTAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 23 0.85
26 4 0.15
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (25 bp):
ATATATTAAATATAAAAATAATTAA
Found at i:56904034 original size:52 final size:49
Alignment explanation
Indices: 56903949--56904108 Score: 206
Period size: 46 Copynumber: 3.3 Consensus size: 49
56903939 TTTGAGTACT
* ** *
56903949 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
56903995 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
56904047 TTTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
56904093 TCTGATCAAGTGACAA
1 TCTGATCAAGTGACAA
56904109 AGTGATTAAG
Statistics
Matches: 99, Mismatches: 6, Indels: 15
0.82 0.05 0.12
Matches are distributed among these distances:
46 55 0.56
48 1 0.01
49 3 0.03
50 1 0.01
52 39 0.39
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:56904065 original size:46 final size:46
Alignment explanation
Indices: 56904015--56904120 Score: 185
Period size: 46 Copynumber: 2.3 Consensus size: 46
56904005 TGACAAGTGG
* *
56904015 AAAGTGATAAGTGATAGCTTCGGCTATACTTATTTGATCAAGTGAT
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC
56904061 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC
56904107 AAAGTGATTAAGTG
1 AAAGTGA-TAAGTG
56904121 GCTACACTTA
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
46 51 0.89
47 6 0.11
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC
Found at i:56904124 original size:38 final size:37
Alignment explanation
Indices: 56904082--56904192 Score: 154
Period size: 38 Copynumber: 3.0 Consensus size: 37
56904072 TGATAGCTTC
* *
56904082 GGCTATACTTATCTGATCAAGTGACAAAGTGATTAAGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGA-TAAGT
* *
56904120 GGCTACACTTATCTGATCAAGAAACAAAGTGATAGGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
*
56904157 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
56904192 G
1 G
56904193 ATCATACGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
35 11 0.17
36 4 0.06
37 22 0.33
38 29 0.44
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.27
Consensus pattern (37 bp):
GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
Found at i:56905509 original size:49 final size:49
Alignment explanation
Indices: 56905448--56905640 Score: 323
Period size: 49 Copynumber: 3.9 Consensus size: 49
56905438 ATGTGAACAT
56905448 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
56905498 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* *
56905547 GTGATATGTGATTTCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * * *
56905596 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCG
56905641 AGAAAACGAA
Statistics
Matches: 137, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
49 133 0.97
50 4 0.03
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (49 bp):
GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:56908855 original size:52 final size:49
Alignment explanation
Indices: 56908770--56909136 Score: 440
Period size: 46 Copynumber: 7.6 Consensus size: 49
56908760 TTTGAGTACT
* **
56908770 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
56908816 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
56908868 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
56908914 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
56908960 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
56909012 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
56909064 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
56909110 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
56909137 GCTACACTTA
Statistics
Matches: 292, Mismatches: 15, Indels: 28
0.87 0.04 0.08
Matches are distributed among these distances:
46 155 0.53
48 1 0.00
49 2 0.01
50 1 0.00
52 133 0.46
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:56908890 original size:98 final size:97
Alignment explanation
Indices: 56908770--56909136 Score: 501
Period size: 98 Copynumber: 3.7 Consensus size: 97
56908760 TTTGAGTACT
* *
56908770 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
56908835 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
56908868 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
56908928 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
56908960 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
56909025 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * * *
56909064 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
56909129 GATAAGTG
65 GA-AAGTG
56909137 GCTACACTTA
Statistics
Matches: 240, Mismatches: 15, Indels: 27
0.85 0.05 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
96 1 0.00
98 145 0.60
99 10 0.04
101 1 0.00
104 41 0.17
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:56909118 original size:196 final size:196
Alignment explanation
Indices: 56908784--56909136 Score: 607
Period size: 196 Copynumber: 1.8 Consensus size: 196
56908774 ATCAAGTGAT
* * *
56908784 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
* * * *
56908849 ATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
56908914 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
56908979 G
196 G
* *
56908980 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
*
56909045 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
56909110 TCTGATCAAGAGACAAAGTGATAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTG
56909137 GCTACACTTA
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
196 146 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (196 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
G
Found at i:56909144 original size:37 final size:37
Alignment explanation
Indices: 56909100--56909208 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
56909090 GATAGCTTTA
56909100 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
56909137 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
56909174 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
56909209 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:56913564 original size:17 final size:18
Alignment explanation
Indices: 56913542--56913576 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
56913532 GATATGATAC
*
56913542 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
56913559 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
56913577 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:56914057 original size:21 final size:19
Alignment explanation
Indices: 56914020--56914058 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
56914010 TTGGACTTCG
*
56914020 TTTTTTTTTTGGTTTATTA
1 TTTTTTTTTTGGCTTATTA
56914039 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGG-CTTATT
56914059 TCTGGGCCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 7 0.41
21 5 0.29
ACGTcount: A:0.10, C:0.03, G:0.13, T:0.74
Consensus pattern (19 bp):
TTTTTTTTTTGGCTTATTA
Found at i:56914367 original size:44 final size:45
Alignment explanation
Indices: 56914251--56914450 Score: 276
Period size: 45 Copynumber: 4.5 Consensus size: 45
56914241 GGAAGGCGAT
* * *
56914251 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
*
56914296 ATCTGTTATCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
** * *
56914341 ATCTACT-TCTTCAATCTGTTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
56914385 ATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
56914430 AACTGTCATCTTGGATCTGCT
1 ATCTGTTATCTTCGATCTGCT
56914451 TCGATGTAAA
Statistics
Matches: 134, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 39 0.29
45 95 0.71
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:56914384 original size:89 final size:89
Alignment explanation
Indices: 56914265--56914430 Score: 287
Period size: 89 Copynumber: 1.9 Consensus size: 89
56914255 GCTATCTTTG
* *
56914265 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCGTCTAATAC
56914330 AGAGATGCCAAATCTACTTCTTCA
66 AGAGATGCCAAATCTACTTCTTCA
* * *
56914354 ATCTGTTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCGTCTAATAC
56914419 AGAGATGCCAAA
66 AGAGATGCCAAA
56914431 ACTGTCATCT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCGTCTAATAC
AGAGATGCCAAATCTACTTCTTCA
Found at i:56914581 original size:78 final size:78
Alignment explanation
Indices: 56914475--56914830 Score: 570
Period size: 78 Copynumber: 4.6 Consensus size: 78
56914465 TGAAGGTTGA
* *
56914475 TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
1 TATGTCTTCGATCTGCTCTCCGTCTAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
*
56914540 ATGTCAGATCTAC
66 AGGTCAGATCTAC
* * *
56914553 TGTGTCTTCAATCTGCTC-CCTGTTTAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATG
1 TATGTCTTCGATCTGCTCTCC-GTCTAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATG
56914617 AAGGTCAGATCTAC
65 AAGGTCAGATCTAC
* * *
56914631 TATGTCTTCGATCTGCTCTCCATCGAATATGGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
1 TATGTCTTCGATCTGCTCTCCGTCTAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
*
56914696 AGGTCAGATCTGC
66 AGGTCAGATCTAC
* *
56914709 TGTGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
1 TATGTCTTCGATCTGCTCTCCGTCTAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
56914774 AGGTCAGATCTAC
66 AGGTCAGATCTAC
* *
56914787 TATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 TATGTCTTCGATCTGCTCTCCGTCTAATATAGAGATGCCAAATC
56914831 TGTTTATTCG
Statistics
Matches: 254, Mismatches: 22, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
77 2 0.01
78 250 0.98
79 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.33
Consensus pattern (78 bp):
TATGTCTTCGATCTGCTCTCCGTCTAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
AGGTCAGATCTAC
Found at i:56914646 original size:37 final size:37
Alignment explanation
Indices: 56914598--56914803 Score: 114
Period size: 37 Copynumber: 5.4 Consensus size: 37
56914588 TGCCAAATCA
*
56914598 TCTTGGATCTGCTTCAATGAAGGTCAGATCTACTATG
1 TCTTCGATCTGCTTCAATGAAGGTCAGATCTACTATG
* ** * * * *
56914635 TCTTCGATCTGCTCTCCATCGAATATGGAGATGCCA-AATCA
1 TCTTCGATCTGCT-TCAAT-GAAGGT-CAGAT-CTACTAT-G
* * *
56914676 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTG
1 TCTTCGATCTGCTTCAATGAAGGTCAGATCTACTATG
** * * * *
56914713 TCTTCGATCTGCTCTCCGTCTAA--TACAGAGATGCCA-AATCA
1 TCTTCGATCTGCT-TCAAT-GAAGGT-C--AGAT-CTACTAT-G
*
56914754 TCTTGGATCTGCTTCAATGAAGGTCAGATCTACTATG
1 TCTTCGATCTGCTTCAATGAAGGTCAGATCTACTATG
56914791 TCTTCGATCTGCT
1 TCTTCGATCTGCT
56914804 CTCCGTCGAA
Statistics
Matches: 118, Mismatches: 35, Indels: 32
0.64 0.19 0.17
Matches are distributed among these distances:
37 40 0.34
38 19 0.16
39 12 0.10
40 19 0.16
41 28 0.24
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (37 bp):
TCTTCGATCTGCTTCAATGAAGGTCAGATCTACTATG
Found at i:56915127 original size:78 final size:78
Alignment explanation
Indices: 56914950--56915348 Score: 586
Period size: 78 Copynumber: 5.1 Consensus size: 78
56914940 TCAACGCAAG
**
56914950 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-ATCTATTATGTCTTCGATCTGCT-C
1 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCC
56915013 CCGTCTAATACAGA
65 CCGTCTAATACAGA
* * * * * *
56915027 GATGGCAAATCATCTTGAATCTGCTTCAATGAATGTCTGATCTGCTGTGTCTTCGATCTACTCCC
1 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCC
56915092 CGTCTAATACAGA
66 CGTCTAATACAGA
*
56915105 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC
1 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCC
* **
56915170 CGTCGAATATGGA
66 CGTCTAATACAGA
* * *
56915183 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGTTGTGTCTTTGATCTGCTCCC
1 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCC
*
56915248 TGTCTAATACAGA
66 CGTCTAATACAGA
* *
56915261 GATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC
1 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCC
* **
56915326 CGTCGAATATGGA
66 CGTCTAATACAGA
56915339 GATGCCAAAT
1 GATGCCAAAT
56915349 ATGTTTCTTC
Statistics
Matches: 285, Mismatches: 35, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
76 1 0.00
77 52 0.18
78 232 0.81
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (78 bp):
GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCC
CGTCTAATACAGA
Found at i:56915241 original size:156 final size:156
Alignment explanation
Indices: 56914950--56915348 Score: 649
Period size: 156 Copynumber: 2.6 Consensus size: 156
56914940 TCAACGCAAG
**
56914950 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-ATCTATTATGTCTTCGATCTGCTC-
1 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCT
* ** * * *
56915013 CCGTCTAATACAGAGATGGCAAATCATCTTGAATCTGCTTCAATGAATGTCTGATCTGCTGTGTC
65 CCGTCGAATATGGAGATGCCAAATCATCTTGAATCTGCTTCAATGAAGGTCAGATCTGCTGTGTC
56915078 TTCGATCTACTCCCCGTCTAATACAGA
130 TTCGATCTACTCCCCGTCTAATACAGA
56915105 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC
1 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC
* *
56915170 CGTCGAATATGGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGTTGTGTCT
66 CGTCGAATATGGAGATGCCAAATCATCTTGAATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCT
* * *
56915235 TTGATCTGCTCCCTGTCTAATACAGA
131 TCGATCTACTCCCCGTCTAATACAGA
*
56915261 GATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC
1 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC
56915326 CGTCGAATATGGAGATGCCAAAT
66 CGTCGAATATGGAGATGCCAAAT
56915349 ATGTTTCTTC
Statistics
Matches: 228, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
154 2 0.01
155 58 0.25
156 168 0.74
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (156 bp):
GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC
CGTCGAATATGGAGATGCCAAATCATCTTGAATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCT
TCGATCTACTCCCCGTCTAATACAGA
Found at i:56915472 original size:519 final size:520
Alignment explanation
Indices: 56914475--56915495 Score: 1776
Period size: 519 Copynumber: 2.0 Consensus size: 520
56914465 TGAAGGTTGA
*
56914475 TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
1 TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTGCTTCAATGA
* * * *
56914540 ATGTCAGATCTACTGTGTCTTCAATCTGCTCCCTGTTTAATATAGAGATGCCAAATCATCTTGGA
66 ATGTCAGATCTACTGTGTCTTCAATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
56914605 TCTGCTTCAATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCTCCATCGAATATGGAGATGCC
131 TCTGCTTCAATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCTCCATCGAATATGGAGATGCC
56914670 AAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCTCCGTCTA
196 AAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCTCCGTCTA
*
56914735 ATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTACTATGTCTTCGATC
261 ATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTACTATGTCTTCGATC
* *
56914800 TGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTATTCGATTTGTTCTCTGACAGTACAGAGA
326 TGCTCTCCGTCGAATATGGAGATGCCAAATATGTTTATTCGATTTGTTCTCTGACAATACAGAGA
* *
56914865 TGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTACTATGTTTTCGAT
391 TGCCAAATCATCTTAGATCTACTTCAGCGTAAACACGTGAAAGCCAAATCTACTATGTCTTCGAT
*
56914930 CTGCTCCTTATCAACGCAAGGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCAATCTAT
456 CTGCTCCTTATCAACGCAAGGATGCCAAATCATCTTGGATCTACTTCAATGAAGGTCCAATCTAT
*
56914995 TATGTCTTCGATCTGCT-CCCGTCTAATACAGAGATGGCAAATCATCTTGAATCTGCTTCAATGA
1 TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTGCTTCAATGA
* * *
56915059 ATGTCTGATCTGCTGTGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
66 ATGTCAGATCTACTGTGTCTTCAATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
* *
56915124 TCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCC
131 TCTGCTTCAATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCTCCATCGAATATGGAGATGCC
* *
56915189 AAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGTTGTGTCTTTGATCTGCTC-CCTGTCT
196 AAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCTCC-GTCT
*
56915253 AATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGAT
260 AATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTACTATGTCTTCGAT
* *
56915318 CTGCTCTCCGTCGAATATGGAGATGCCAAATATGTTTCTTCGATTTGTTCTCTGACAATACAGGG
325 CTGCTCTCCGTCGAATATGGAGATGCCAAATATGTTTATTCGATTTGTTCTCTGACAATACAGAG
** **
56915383 ATGTTAAATCATCTTAGATCTACTTCAGCGTAAACACGTGAAAGCCAAATCTGTTATGTCTTCGA
390 ATGCCAAATCATCTTAGATCTACTTCAGCGTAAACACGTGAAAGCCAAATCTACTATGTCTTCGA
*
56915448 TCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACTTC
455 TCTGCTCCTTATCAACGCAAGGATGCCAAATCATCTTGGATCTACTTC
56915496 GATGTGAAAA
Statistics
Matches: 473, Mismatches: 27, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
518 2 0.00
519 454 0.96
520 17 0.04
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (520 bp):
TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTGCTTCAATGA
ATGTCAGATCTACTGTGTCTTCAATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
TCTGCTTCAATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCTCCATCGAATATGGAGATGCC
AAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCTCCGTCTA
ATACAGAGATGCCAAATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTACTATGTCTTCGATC
TGCTCTCCGTCGAATATGGAGATGCCAAATATGTTTATTCGATTTGTTCTCTGACAATACAGAGA
TGCCAAATCATCTTAGATCTACTTCAGCGTAAACACGTGAAAGCCAAATCTACTATGTCTTCGAT
CTGCTCCTTATCAACGCAAGGATGCCAAATCATCTTGGATCTACTTCAATGAAGGTCCAATCTAT
Found at i:56923892 original size:18 final size:18
Alignment explanation
Indices: 56923869--56923904 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
56923859 GATAAGATAC
56923869 TAAAAT-TATTAAAAAAAT
1 TAAAATATA-TAAAAAAAT
56923887 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
56923905 CAGGGAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:56924915 original size:21 final size:22
Alignment explanation
Indices: 56924870--56924915 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
56924860 CAGTATTTTG
*
56924870 CATAAATATACAAAAAATATAT
1 CATAAAAATACAAAAAATATAT
56924892 CATAAAAATA-AATAAAAT-TAT
1 CATAAAAATACAA-AAAATATAT
56924913 CAT
1 CAT
56924916 GCTTATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (22 bp):
CATAAAAATACAAAAAATATAT
Found at i:56925408 original size:19 final size:19
Alignment explanation
Indices: 56925384--56925428 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
56925374 TAAAATTAAG
56925384 ATTATTATGATTATCACAA
1 ATTATTATGATTATCACAA
56925403 ATTATTATGATTATCACAA
1 ATTATTATGATTATCACAA
56925422 ATT-TTAT
1 ATTATTAT
56925429 TTTAATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (19 bp):
ATTATTATGATTATCACAA
Found at i:56925946 original size:12 final size:12
Alignment explanation
Indices: 56925931--56925973 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
56925921 TCTGGTCGAG
*
56925931 GTGGTGGTGGAC
1 GTGGTGGTGGTC
**
56925943 GTGGCAGTGGTC
1 GTGGTGGTGGTC
*
56925955 GGGGTGGTGGTC
1 GTGGTGGTGGTC
56925967 GTGGTGG
1 GTGGTGG
56925974 ACGTGGCCGG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.05, C:0.09, G:0.60, T:0.26
Consensus pattern (12 bp):
GTGGTGGTGGTC
Found at i:56926179 original size:27 final size:27
Alignment explanation
Indices: 56926104--56926172 Score: 120
Period size: 27 Copynumber: 2.6 Consensus size: 27
56926094 TAACCCCCTT
*
56926104 CCTCCTCAGATGGCTCCGGCTCAGCAA
1 CCTCCTCAGATGGCTCCGGCTCAGCCA
56926131 CCTCCTCAGATGGCTCCGGCTCAGCCA
1 CCTCCTCAGATGGCTCCGGCTCAGCCA
*
56926158 CCTCCTCAAATGGCT
1 CCTCCTCAGATGGCT
56926173 GTAGCTCCGC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.17, C:0.42, G:0.20, T:0.20
Consensus pattern (27 bp):
CCTCCTCAGATGGCTCCGGCTCAGCCA
Found at i:56933795 original size:23 final size:22
Alignment explanation
Indices: 56933747--56933802 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 22
56933737 ACAAAATTTA
*
56933747 TTTTATTTTATTAATAACATGT
1 TTTTATTTTATTAATAAAATGT
*
56933769 TTTTATTTCTATTTATCAAAATGT
1 TTTTATTT-TATTAAT-AAAATGT
*
56933793 TTTTTTTTTA
1 TTTTATTTTA
56933803 AAAAATAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.28
23 8 0.28
24 13 0.45
ACGTcount: A:0.27, C:0.05, G:0.04, T:0.64
Consensus pattern (22 bp):
TTTTATTTTATTAATAAAATGT
Found at i:56935843 original size:107 final size:107
Alignment explanation
Indices: 56935711--56935924 Score: 428
Period size: 107 Copynumber: 2.0 Consensus size: 107
56935701 AGAACAAGAT
56935711 CTGCAAAAGAAAAAGGAAGAATATTTATGGCTTACTACATCATGCAGGCAAAAATCATCCAGCTA
1 CTGCAAAAGAAAAAGGAAGAATATTTATGGCTTACTACATCATGCAGGCAAAAATCATCCAGCTA
56935776 AGTGACATATAAAGCATTAAAATTTCAAGCACAAAGCTAAGC
66 AGTGACATATAAAGCATTAAAATTTCAAGCACAAAGCTAAGC
56935818 CTGCAAAAGAAAAAGGAAGAATATTTATGGCTTACTACATCATGCAGGCAAAAATCATCCAGCTA
1 CTGCAAAAGAAAAAGGAAGAATATTTATGGCTTACTACATCATGCAGGCAAAAATCATCCAGCTA
56935883 AGTGACATATAAAGCATTAAAATTTCAAGCACAAAGCTAAGC
66 AGTGACATATAAAGCATTAAAATTTCAAGCACAAAGCTAAGC
56935925 TTAGGCCTAC
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 107 1.00
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.21
Consensus pattern (107 bp):
CTGCAAAAGAAAAAGGAAGAATATTTATGGCTTACTACATCATGCAGGCAAAAATCATCCAGCTA
AGTGACATATAAAGCATTAAAATTTCAAGCACAAAGCTAAGC
Found at i:56936321 original size:18 final size:18
Alignment explanation
Indices: 56936298--56936334 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
56936288 AATAAATAAC
*
56936298 AAAGAAACCCGTCAAACT
1 AAAGAAACCCATCAAACT
56936316 AAAGAAACCCATCAAACT
1 AAAGAAACCCATCAAACT
56936334 A
1 A
56936335 TTTTGCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.54, C:0.27, G:0.08, T:0.11
Consensus pattern (18 bp):
AAAGAAACCCATCAAACT
Found at i:56939288 original size:10 final size:10
Alignment explanation
Indices: 56939275--56939383 Score: 58
Period size: 10 Copynumber: 11.8 Consensus size: 10
56939265 GTTATAAAAA
56939275 AATAAAAATT
1 AATAAAAATT
*
56939285 AATAAAAGTT
1 AATAAAAATT
56939295 -ATAAAAATT
1 AATAAAAATT
* **
56939304 ATTAAACTTT
1 AATAAAAATT
56939314 AAT-AAAATAT
1 AATAAAAAT-T
56939324 AA-AAAAATT
1 AATAAAAATT
*
56939333 --TAAAATTT
1 AATAAAAATT
*
56939341 ACTAAAAATT
1 AATAAAAATT
*
56939351 -AGAAAAA--
1 AATAAAAATT
56939358 AATAAAAA-T
1 AATAAAAATT
* *
56939367 CATAAAAAAT
1 AATAAAAATT
56939377 -ATAAAAA
1 AATAAAAA
56939384 ATGTAAAGTT
Statistics
Matches: 76, Mismatches: 14, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
8 12 0.16
9 31 0.41
10 33 0.43
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (10 bp):
AATAAAAATT
Found at i:56939299 original size:27 final size:27
Alignment explanation
Indices: 56939260--56939384 Score: 103
Period size: 27 Copynumber: 4.6 Consensus size: 27
56939250 ACATGTGACA
56939260 AAAAAGTTATAAAAAAATAAAAATTAAT
1 AAAAA-TTATAAAAAAATAAAAATTAAT
* * **
56939288 AAAAGTTATAAAAATTATTAAACTTTAAT
1 AAAAATTATAAAAA--AATAAAAATTAAT
* *
56939317 -AAAA-TATAAAAAAATTTAAAATTTACT
1 AAAAATTATAAAAAAA--TAAAAATTAAT
* *
56939344 AAAAATTAGAAAAAAATAAAAA-TCAT
1 AAAAATTATAAAAAAATAAAAATTAAT
*
56939370 AAAAAATATAAAAAA
1 AAAAATTATAAAAAA
56939385 TGTAAAGTTT
Statistics
Matches: 77, Mismatches: 14, Indels: 14
0.73 0.13 0.13
Matches are distributed among these distances:
25 1 0.01
26 15 0.19
27 31 0.40
28 11 0.14
29 19 0.25
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (27 bp):
AAAAATTATAAAAAAATAAAAATTAAT
Found at i:56939363 original size:17 final size:18
Alignment explanation
Indices: 56939343--56939383 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
56939333 TAAAATTTAC
*
56939343 TAAAAATTAGAAAAAA-A
1 TAAAAATCAGAAAAAATA
*
56939360 TAAAAATCATAAAAAATA
1 TAAAAATCAGAAAAAATA
56939378 TAAAAA
1 TAAAAA
56939384 ATGTAAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (18 bp):
TAAAAATCAGAAAAAATA
Found at i:56939385 original size:9 final size:9
Alignment explanation
Indices: 56939267--56939390 Score: 58
Period size: 9 Copynumber: 13.7 Consensus size: 9
56939257 ACAAAAAAGT
56939267 TATAAAAAA
1 TATAAAAAA
*
56939276 -ATAAAAAT
1 TATAAAAAA
**
56939284 TAATAAAAGT
1 T-ATAAAAAA
*
56939294 TATAAAAAT
1 TATAAAAAA
* *
56939303 TAT-TAAAC
1 TATAAAAAA
*
56939311 TTTAATAAAA
1 TATAA-AAAA
56939321 TATAAAAAAA
1 TAT-AAAAAA
* **
56939331 TTTAAAATT
1 TATAAAAAA
*
56939340 TACTAAAAAT
1 TA-TAAAAAA
*
56939350 TAGAAAAAA
1 TATAAAAAA
56939359 -AT-AAAAA
1 TATAAAAAA
56939366 TCATAAAAAA
1 T-ATAAAAAA
56939376 TATAAAAAA
1 TATAAAAAA
*
56939385 TGTAAA
1 TATAAA
56939391 GTTTTATAAA
Statistics
Matches: 88, Mismatches: 18, Indels: 18
0.71 0.15 0.15
Matches are distributed among these distances:
7 5 0.06
8 13 0.15
9 35 0.40
10 33 0.38
11 2 0.02
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (9 bp):
TATAAAAAA
Found at i:56939542 original size:19 final size:19
Alignment explanation
Indices: 56939504--56939543 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
56939494 TTTTTACGAA
**
56939504 TTTTATATTTCTTTACATT
1 TTTTATATTTCCATACATT
*
56939523 TTTTATATTTCCATATATT
1 TTTTATATTTCCATACATT
56939542 TT
1 TT
56939544 ATAATTTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTATATTTCCATACATT
Found at i:56939594 original size:19 final size:19
Alignment explanation
Indices: 56939552--56939603 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
56939542 TTATAATTTT
56939552 TTTTTACAATTTTTATAAA
1 TTTTTACAATTTTTATAAA
* *
56939571 ATTTTACAAATTTTTAT-TA
1 TTTTTAC-AATTTTTATAAA
*
56939590 TTTTTATAATTTTT
1 TTTTTACAATTTTT
56939604 TTCTAATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
18 7 0.25
19 12 0.43
20 9 0.32
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTTACAATTTTTATAAA
Found at i:56939604 original size:10 final size:10
Alignment explanation
Indices: 56939482--56939603 Score: 53
Period size: 9 Copynumber: 12.7 Consensus size: 10
56939472 CTGGTATAAT
56939482 AATTTTTATA
1 AATTTTTATA
**
56939492 AATTTTTACG
1 AATTTTTATA
56939502 AA-TTTTAT-
1 AATTTTTATA
56939510 -ATTTCTT-TA
1 AATTT-TTATA
*
56939519 CATTTTT-TA
1 AATTTTTATA
* **
56939528 TATTTCCATA
1 AATTTTTATA
*
56939538 TA-TTTTATA
1 AATTTTTATA
* *
56939547 ATTTTTTTTTA
1 A-ATTTTTATA
56939558 CAATTTTTATA
1 -AATTTTTATA
* *
56939569 AAATTTTACA
1 AATTTTTATA
56939579 AATTTTTAT-
1 AATTTTTATA
*
56939588 TATTTTTAT-
1 AATTTTTATA
56939597 AATTTTT
1 AATTTTT
56939604 TTCTAATTTT
Statistics
Matches: 85, Mismatches: 19, Indels: 17
0.70 0.16 0.14
Matches are distributed among these distances:
7 1 0.01
8 3 0.04
9 34 0.40
10 33 0.39
11 13 0.15
12 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (10 bp):
AATTTTTATA
Found at i:56942830 original size:24 final size:23
Alignment explanation
Indices: 56942802--56942847 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
56942792 ATAATAATTC
56942802 AAGTTAAAATAATTCAAAATTAAA
1 AAGTTAAAATAATTC-AAATTAAA
**
56942826 AAGTTAATTTAATTCAAATTAA
1 AAGTTAAAATAATTCAAATTAA
56942848 TTTTATGTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (23 bp):
AAGTTAAAATAATTCAAATTAAA
Found at i:56944732 original size:23 final size:23
Alignment explanation
Indices: 56944706--56944753 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
56944696 TGGAAGATTC
*
56944706 TTCGTTGAATTTCTCTATTTCAA
1 TTCGTTGAATTTCTCAATTTCAA
* *
56944729 TTCGTTGATTTTGTCAATTTCAA
1 TTCGTTGAATTTCTCAATTTCAA
56944752 TT
1 TT
56944754 ATCATCATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.21, C:0.15, G:0.10, T:0.54
Consensus pattern (23 bp):
TTCGTTGAATTTCTCAATTTCAA
Found at i:56946081 original size:61 final size:61
Alignment explanation
Indices: 56945995--56946116 Score: 154
Period size: 61 Copynumber: 2.0 Consensus size: 61
56945985 TTATTCGAAG
* ** *
56945995 GTAAAAATATAATAGTACGTCATATCTTAAAATGAATTAATGACTATATACTTATAATTTT
1 GTAAAAATATAATAGTACGTAATATCTTAAAATGAATTAACAACCATATACTTATAATTTT
** * ** *
56946056 GTAAAAATATAATCTTACTTAATATCTTAAAATTTATTAACAACCATATATTTATAATTTT
1 GTAAAAATATAATAGTACGTAATATCTTAAAATGAATTAACAACCATATACTTATAATTTT
56946117 TAATTACATT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (61 bp):
GTAAAAATATAATAGTACGTAATATCTTAAAATGAATTAACAACCATATACTTATAATTTT
Found at i:56947679 original size:14 final size:15
Alignment explanation
Indices: 56947660--56947691 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
56947650 GTTAGCCAGT
56947660 AAAATAATTTCT-GG
1 AAAATAATTTCTAGG
56947674 AAAATAATTTCTAGG
1 AAAATAATTTCTAGG
56947689 AAA
1 AAA
56947692 TGATTTACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.50, C:0.06, G:0.12, T:0.31
Consensus pattern (15 bp):
AAAATAATTTCTAGG
Found at i:56947879 original size:15 final size:14
Alignment explanation
Indices: 56947849--56947891 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 14
56947839 CACTTTCTTG
*
56947849 AAAA-TATTTCAAA
1 AAAACTATTTTAAA
56947862 AAAACTACTTTTAAA
1 AAAACTA-TTTTAAA
*
56947877 AAAGCTATTTTAAA
1 AAAACTATTTTAAA
56947891 A
1 A
56947892 CATATATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 4 0.15
14 10 0.38
15 12 0.46
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (14 bp):
AAAACTATTTTAAA
Found at i:56949469 original size:23 final size:23
Alignment explanation
Indices: 56949387--56949473 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
56949377 CCTGATCAGT
*
56949387 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
56949409 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
56949429 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
56949452 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
56949474 TCAGTAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:56954379 original size:16 final size:17
Alignment explanation
Indices: 56954358--56954390 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
56954348 TAAATGAGTT
56954358 AATTAGGAT-TAAATTG
1 AATTAGGATATAAATTG
*
56954374 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
56954391 GATAGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.36
Consensus pattern (17 bp):
AATTAGGATATAAATTG
Found at i:56954827 original size:13 final size:14
Alignment explanation
Indices: 56954806--56954845 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
56954796 ATTTGATTGG
56954806 AAAATGAATTAAA-
1 AAAATGAATTAAAT
*
56954819 AATATGAATTAAAT
1 AAAATGAATTAAAT
56954833 AAAAGTGAATTAA
1 AAAA-TGAATTAA
56954846 TTTATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 3 0.13
15 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (14 bp):
AAAATGAATTAAAT
Found at i:56955825 original size:21 final size:21
Alignment explanation
Indices: 56955799--56955839 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
56955789 AAAATGTTGG
56955799 TTTAAATAATTATTGAAAGAT
1 TTTAAATAATTATTGAAAGAT
56955820 TTTAAATAATTATTGAAAGA
1 TTTAAATAATTATTGAAAGA
56955840 CTAATGTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (21 bp):
TTTAAATAATTATTGAAAGAT
Found at i:56956148 original size:26 final size:26
Alignment explanation
Indices: 56956119--56956200 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
56956109 TGGTACAAAT
56956119 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
56956145 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
56956171 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
56956197 TGAT
1 TGAT
56956201 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:56964326 original size:88 final size:88
Alignment explanation
Indices: 56964224--56964399 Score: 343
Period size: 88 Copynumber: 2.0 Consensus size: 88
56964214 AATTTTTAAA
56964224 ATTTGTGTTTGAAATATTTTGCATATTATTCGATTCAAATGTTTTATTCTACAATATTTATTTCA
1 ATTTGTGTTTGAAATATTTTGCATATTATTCGATTCAAATGTTTTATTCTACAATATTTATTTCA
56964289 AATAATTATATATCCCTAGCTTT
66 AATAATTATATATCCCTAGCTTT
56964312 ATTTGTGTTTGAAATATTTTGCATATTATTCGATTCAAATGTTTTATTCTACAATATTTATTTCA
1 ATTTGTGTTTGAAATATTTTGCATATTATTCGATTCAAATGTTTTATTCTACAATATTTATTTCA
*
56964377 AATAATTATATATCCTTAGCTTT
66 AATAATTATATATCCCTAGCTTT
56964400 TATACAAGCT
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.51
Consensus pattern (88 bp):
ATTTGTGTTTGAAATATTTTGCATATTATTCGATTCAAATGTTTTATTCTACAATATTTATTTCA
AATAATTATATATCCCTAGCTTT
Found at i:56965239 original size:20 final size:20
Alignment explanation
Indices: 56965182--56965231 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
56965172 ATTTTATTTG
*
56965182 ATTTTACATGAACCAAAATT
1 ATTTTTCATGAACCAAAATT
56965202 ATTTTTCATGAACCAAAATT
1 ATTTTTCATGAACCAAAATT
56965222 ATTTTTCATG
1 ATTTTTCATG
56965232 GAATAAAACG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.42
Consensus pattern (20 bp):
ATTTTTCATGAACCAAAATT
Found at i:56977440 original size:8 final size:7
Alignment explanation
Indices: 56977424--56977477 Score: 51
Period size: 6 Copynumber: 7.9 Consensus size: 7
56977414 CAAAAGTGTT
56977424 TTTAATA
1 TTTAATA
56977431 TTTAAATA
1 TTT-AATA
56977439 TTTAATA
1 TTTAATA
* *
56977446 TTATAGTT
1 TT-TAATA
56977454 TTTAAT-
1 TTTAATA
56977460 TTTAAT-
1 TTTAATA
56977466 TTTAAT-
1 TTTAATA
56977472 TTTAAT
1 TTTAAT
56977478 TTAAAAATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
6 18 0.43
7 12 0.29
8 12 0.29
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (7 bp):
TTTAATA
Found at i:56977457 original size:15 final size:15
Alignment explanation
Indices: 56977421--56977476 Score: 50
Period size: 15 Copynumber: 4.0 Consensus size: 15
56977411 AGTCAAAAGT
56977421 GTTTTTAATATTTAA
1 GTTTTTAATATTTAA
* *
56977436 ATATTTAATA-TTATA
1 GTTTTTAATATTTA-A
56977451 GTTTTTAAT-TTTAA
1 GTTTTTAATATTTAA
56977465 --TTTTAAT-TTTAA
1 GTTTTTAATATTTAA
56977477 TTTAAAAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
12 12 0.34
14 4 0.11
15 19 0.54
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.61
Consensus pattern (15 bp):
GTTTTTAATATTTAA
Found at i:56977464 original size:6 final size:6
Alignment explanation
Indices: 56977453--56977479 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
56977443 ATATTATAGT
56977453 TTTTAA TTTTAA TTTTAA TTTTAA TTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTT
56977480 AAAAATTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTTAA
Found at i:56981357 original size:132 final size:132
Alignment explanation
Indices: 56981104--56981344 Score: 315
Period size: 132 Copynumber: 1.8 Consensus size: 132
56981094 TTTCGAAGAG
* ** * *
56981104 ATATTCGATTATTTTGAACAAACGGGAAATTGCAACTCAACACGATAGGGCATGATTCTCGAATT
1 ATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCATGATTCCCGAATT
** * * * * *
56981169 ATCAAACATCGAGTATTGTCTTCGTTTTGGAAGGTTTTTTTATAAACACGAGTGAAAGCCTAAAG
66 ATCAAACATCGAGTATTACCTTCATTTTGAAAGGTATTTTAAAAAACACGAGTGAAAGCCTAAAG
56981234 GA
131 GA
* *
56981236 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCCCGAATT
1 ATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCATGATTCCCGAATT
* *
56981301 GTCAAACA-CTGAGTATTACCTTCATTTTTAAAGG-ATTTTAAAAA
66 ATCAAACATC-GAGTATTACCTTCATTTTGAAAGGTATTTTAAAAA
56981345 GATATGAGTG
Statistics
Matches: 92, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
131 8 0.09
132 84 0.91
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (132 bp):
ATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCATGATTCCCGAATT
ATCAAACATCGAGTATTACCTTCATTTTGAAAGGTATTTTAAAAAACACGAGTGAAAGCCTAAAG
GA
Found at i:56983942 original size:4 final size:4
Alignment explanation
Indices: 56983933--56983958 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
56983923 TTTTTTATTA
56983933 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
56983959 TATATATAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:56989221 original size:19 final size:19
Alignment explanation
Indices: 56989199--56989235 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
56989189 ATACATTTAC
56989199 ATTGCATTGCATCATTTGT
1 ATTGCATTGCATCATTTGT
56989218 ATTGCATTGCATCATTTG
1 ATTGCATTGCATCATTTG
56989236 CATTAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.46
Consensus pattern (19 bp):
ATTGCATTGCATCATTTGT
Found at i:56991773 original size:5 final size:5
Alignment explanation
Indices: 56991759--56991830 Score: 89
Period size: 5 Copynumber: 14.8 Consensus size: 5
56991749 TGAGATATTT
56991759 AAAA- AAAAG AAAAG AAAAG AAAAG AAAAG -AAAG AAATA- AAGAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAA-AG AA-AAG AAAAG
*
56991808 AAAA- AGAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAA
56991831 TGAGAGGCCA
Statistics
Matches: 60, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
4 11 0.18
5 45 0.75
6 4 0.07
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.01
Consensus pattern (5 bp):
AAAAG
Found at i:56991791 original size:14 final size:14
Alignment explanation
Indices: 56991763--56991829 Score: 79
Period size: 14 Copynumber: 4.9 Consensus size: 14
56991753 ATATTTAAAA
56991763 AAAAGAAAAGAAAAG
1 AAAAGAAAAG-AAAG
56991778 AAAAGAAAAGAAAG
1 AAAAGAAAAGAAAG
*
56991792 -AAA-TAAAG-AAG
1 AAAAGAAAAGAAAG
56991803 AAAAGAAAA-AGAAG
1 AAAAGAAAAGA-AAG
56991817 AAAAGAAAAGAAA
1 AAAAGAAAAGAAA
56991830 ATGAGAGGCC
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
11 3 0.07
12 7 0.16
13 6 0.13
14 18 0.40
15 11 0.24
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.01
Consensus pattern (14 bp):
AAAAGAAAAGAAAG
Found at i:56991801 original size:8 final size:7
Alignment explanation
Indices: 56991761--56991825 Score: 53
Period size: 8 Copynumber: 8.6 Consensus size: 7
56991751 AGATATTTAA
56991761 AAAAAAG
1 AAAAAAG
56991768 AAAAGAA-
1 AAAA-AAG
56991775 AAGAAAAG
1 AA-AAAAG
56991783 AAAAGAAAG
1 -AAA-AAAG
56991792 AAATAAAG
1 AAA-AAAG
56991800 AAGAAAAG
1 AA-AAAAG
56991808 -AAAAAG
1 AAAAAAG
56991814 AAGAAAAG
1 AA-AAAAG
56991822 AAAA
1 AAAA
56991826 GAAAATGAGA
Statistics
Matches: 49, Mismatches: 1, Indels: 16
0.74 0.02 0.24
Matches are distributed among these distances:
6 5 0.10
7 12 0.24
8 25 0.51
9 7 0.14
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:56993273 original size:132 final size:129
Alignment explanation
Indices: 56993036--56993874 Score: 871
Period size: 132 Copynumber: 6.4 Consensus size: 129
56993026 TGGGCCTATG
* * * * *
56993036 AGGCTAAAATTTTAGATCTTGTTTCCTTGAAATTGAAGTGAAGCAGATCGAAGACGGTGAATCTG
1 AGGCTAAAATTTTAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGTGAATCTT
* * *
56993101 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACTAAGCTCCTTAAAGTTGTAGTGGA
66 AGCTTCCTGAAGTTGCAGCGAAGCAGATTTAAACCACC--CT-AGCTCCCTAAAGTTGTAGTGGA
*
56993166 TT
128 GT
* * *
56993168 AGGCTAAAATTTTAGATCTTGTTTCCCTGAAGTTGCAGTGAAGAAGATCGAAGACGGCGAATCTT
1 AGGCTAAAATTTTAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGTGAATCTT
* *
56993233 AGCTTCCTGAAGTTGCAGCGAAACAGATTTAAACCACCAACCCAGCTCCCTAAAGTTGTAGTGGA
66 AGCTTCCTGAAGTTGCAGCGAAGCAGATTTAAACCA-C--CCTAGCTCCCTAAAGTTGTAGTGGA
*
56993298 GC
128 GT
* * ** * *
56993300 AGGCTAAAATTTCAGATCTCGTTTCTTTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTG
1 AGGCTAAAATTTTAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGTGAATCTT
* *
56993365 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
66 AGCTTCCTGAAGTTGCAGCGAAGCAGATTTAA---ACCACCCTAGCTCCCTAAAGTTGTAGTGGA
56993430 GT
128 GT
* * * * * *
56993432 AGGCTAAAATTTCAGATCTCGTTTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTT
1 AGGCTAAAATTTTAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGTGAATCTT
* * * * * * *
56993497 GGCTCCCTGAAGATGCAGCGAAGCAGATTT-AAGCATCCTAGCTCCCTAAGGTTATAGTGGAGT
66 AGCTTCCTGAAGTTGCAGCGAAGCAGATTTAAACCACCCTAGCTCCCTAAAGTTGTAGTGGAGT
* * * * * *
56993560 AGGCTGAAGATTATAGATCTTGTTTCCCTG-AGATGACAGTGGGGCAGATCGAAGATGGCGAATC
1 AGGCT-AAAATTTTAGATCTTGTTTCCCTGAAGTTG-CAGTGAGGCAGATCGAAGACGGTGAATC
* * * * * * *
56993624 -TAGGCTTCCTGATGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTAG
64 TTA-GCTTCCTGAAGTTGCAGCGAAGCAGATTTAAACCA-CCCTAGCTCCCTAAAGTTGTAGTGG
56993688 AGT
127 AGT
** * * * * * * *
56993691 AGGCTGAGGATTGTAGATCTCGCCTT-CCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATC
1 AGGCT-AAAATTTTAGATCTTG-TTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGTGAATC
* * * * * *
56993755 TTGGCTTCCTGAAGATGCAGCGAAGCAGATTT-AAGCATCCTAGCTTCCTAAGGTTGTAGTGGAG
64 TTAGCTTCCTGAAGTTGCAGCGAAGCAGATTTAAACCACCCTAGCTCCCTAAAGTTGTAGTGGAG
56993819 T
129 T
* * * *
56993820 AGACTGAAGATTATAGATCTTGTTTCCCTG-AGATTGCAGTGGGGCAGATCGAAGA
1 AGGCT-AAAATTTTAGATCTTGTTTCCCTGAAG-TTGCAGTGAGGCAGATCGAAGA
56993875 TAGCAGATTT
Statistics
Matches: 595, Mismatches: 96, Indels: 35
0.82 0.13 0.05
Matches are distributed among these distances:
128 42 0.07
129 131 0.22
130 4 0.01
131 95 0.16
132 316 0.53
133 2 0.00
135 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (129 bp):
AGGCTAAAATTTTAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGTGAATCTT
AGCTTCCTGAAGTTGCAGCGAAGCAGATTTAAACCACCCTAGCTCCCTAAAGTTGTAGTGGAGT
Found at i:56993875 original size:260 final size:256
Alignment explanation
Indices: 56993048--56993874 Score: 1031
Period size: 260 Copynumber: 3.2 Consensus size: 256
56993038 GCTAAAATTT
* * *
56993048 TAGATCTTGTTTCCTTGAAATTGAAGTGAAGCAGATCGAAGACGGTGAATCTGAGCTTCCTGAAG
1 TAGATCTTGTTTCCCTGAGATTGCAGTGAAGCAGATCGAAGACGGTGAATCTGAGCTTCCTGAAG
*
56993113 TTGCAGTGAAGCAGATTTAAGCCACCAA-CTAAGCTCCTTAAAGTTGTAGTGGATTAGGCTAAAA
66 TTGCAGTGAAGCAGATTTAAG-CA--AACCT-AGCTCC-TAAAGTTGTAGTGGAGTAGGCTAAAA
* * * *** *
56993177 TTTTAGATCTTGTTTCCCTGAAGTTGCAGTGAAG-AAGATCGAAGACGGCGAATCTTAGCTTCCT
126 -TTTAGATCTCGTTTCCCTGAAGTTGCAGTGAGGCAA-ATCAAAGACGATAAATCTTGGCTTCCT
* * * * * * *
56993241 GAAGTTGCAGCGAAACAGATTTAAACCACCAACCCAGCTCCCTAAAGTTGTAGTGGAGCAGGCT-
189 GAAGATGCAGCGAAGCAGATTT--A--AGCATCCTAGCTCCCTAAGGTTGTAGTGGAGTAGGCTG
*
56993305 AAAATT-
250 AAGATTA
* **
56993311 TCAGATCTCGTTTCTTTGA-AGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTGAGCTTCCTGA
1 T-AGATCTTGTTTCCCTGAGA-TTGCAGTGAAGCAGATCGAAGACGGTGAATCTGAGCTTCCTGA
56993375 AGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAA
64 AGTTGCAGTGAAGCAGATTTAAG-CA--AACCTAGCT-CCTAAAGTTGTAGTGGAGTAGGCTAAA
*
56993440 ATTTCAGATCTCGTTTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTTGGCTCCCT
125 ATTT-AGATCTCGTTTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTTGGCTTCCT
*
56993505 GAAGATGCAGCGAAGCAGATTTAAGCATCCTAGCTCCCTAAGGTTATAGTGGAGTAGGCTGAAGA
189 GAAGATGCAGCGAAGCAGATTTAAGCATCCTAGCTCCCTAAGGTTGTAGTGGAGTAGGCTGAAGA
56993570 TTA
254 TTA
** * *
56993573 TAGATCTTGTTTCCCTGAGA-TGACAGTGGGGCAGATCGAAGATGGCGAATCT-AGGCTTCCTGA
1 TAGATCTTGTTTCCCTGAGATTG-CAGTGAAGCAGATCGAAGACGGTGAATCTGA-GCTTCCTGA
* * * **
56993636 TGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTAGAGTAGGCTGAGGA
64 AGTTGCAGTGAAGCAGATTTAAGCAA-ACCTAGCTC-CTAAAGTTGTAGTGGAGTAGGCT-AAAA
*
56993701 TTGTAGATCTCGCCTT-CCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTTGGCTTCCT
126 TT-TAGATCTCG-TTTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTTGGCTTCCT
* *
56993765 GAAGATGCAGCGAAGCAGATTTAAGCATCCTAGCTTCCTAAGGTTGTAGTGGAGTAGACTGAAGA
189 GAAGATGCAGCGAAGCAGATTTAAGCATCCTAGCTCCCTAAGGTTGTAGTGGAGTAGGCTGAAGA
56993830 TTA
254 TTA
**
56993833 TAGATCTTGTTTCCCTGAGATTGCAGTGGGGCAGATCGAAGA
1 TAGATCTTGTTTCCCTGAGATTGCAGTGAAGCAGATCGAAGA
56993875 TAGCAGATTT
Statistics
Matches: 509, Mismatches: 38, Indels: 37
0.87 0.07 0.06
Matches are distributed among these distances:
258 2 0.00
259 29 0.06
260 199 0.39
261 80 0.16
262 3 0.01
263 5 0.01
264 185 0.36
265 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (256 bp):
TAGATCTTGTTTCCCTGAGATTGCAGTGAAGCAGATCGAAGACGGTGAATCTGAGCTTCCTGAAG
TTGCAGTGAAGCAGATTTAAGCAAACCTAGCTCCTAAAGTTGTAGTGGAGTAGGCTAAAATTTAG
ATCTCGTTTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTTGGCTTCCTGAAGATG
CAGCGAAGCAGATTTAAGCATCCTAGCTCCCTAAGGTTGTAGTGGAGTAGGCTGAAGATTA
Found at i:56993912 original size:44 final size:44
Alignment explanation
Indices: 56993863--56994444 Score: 788
Period size: 44 Copynumber: 13.2 Consensus size: 44
56993853 TTGCAGTGGG
*
56993863 GCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCGGAGA
1 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
* * *
56993907 GCAGATCAAAAATAGCAGATTTGGCATTTCTGTATTGGCGGAGA
1 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
* * * *
56993951 GCAGATCGAAGATAGCAGATTTGGCGTCTCTGTGTTGGTGGATA
1 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
*
56993995 GCAGATCGAAAATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
1 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
* * * *
56994039 GCAGATCAAAGATAGCAGATTTGGCGTCTCTGTAGTGGCGAAGA
1 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
* *
56994083 GCAGATCGAAGATAACAGATTTGGCATCTCTGTAGTGGCGGAGA
1 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
* * * * *
56994127 GCAGATTGAAGATAACAAATTTGGCATCTTTGTGTTGGCGGAGA
1 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
* *
56994171 GCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCGAAGA
1 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
* * * *
56994215 GCAGATTGAAGATAGCAGATTTGGCGTCTCTGTAGTGGCAGAGA
1 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
* * * *
56994259 GCAGATCGAAGATAACAGATTTGGCATCTCCGTAGTGGTGGAGA
1 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
* *
56994303 GCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGTGGCGGAGA
1 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
* * * *
56994347 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTGTTGACAGAAA
1 GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
* **
56994391 GCAGATTGAAGAT-GACAGATTTGGCATCTCTGTATTGGTAGAGA
1 GCAGATCGAAGATAG-CAGATTTGGCATCTCTGTATTGGCGGAGA
*
56994435 ACAGATCGAA
1 GCAGATCGAA
56994445 AATAACAAAT
Statistics
Matches: 473, Mismatches: 64, Indels: 2
0.88 0.12 0.00
Matches are distributed among these distances:
43 1 0.00
44 472 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (44 bp):
GCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCGGAGA
Found at i:56996373 original size:11 final size:13
Alignment explanation
Indices: 56996349--56996375 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
56996339 TGCTATGATA
56996349 ATATGTTTTATAT
1 ATATGTTTTATAT
56996362 ATATGTTTTATAT
1 ATATGTTTTATAT
56996375 A
1 A
56996376 GATTATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.59
Consensus pattern (13 bp):
ATATGTTTTATAT
Found at i:56997988 original size:132 final size:131
Alignment explanation
Indices: 56997681--56997981 Score: 295
Period size: 131 Copynumber: 2.3 Consensus size: 131
56997671 TCACTTGCTT
* * * * * * *
56997681 AAAATAATCAAATATTCCCTCAAAATTTCACTCGTATCTTCC-AAAAA-TCCTTTAAAATGAAGG
1 AAAACAATCGAATATTCCTTCAGAATTTCACTCATAT-TTCCTAAAAACT-CATTAAAACGAAGG
* * * ** *
56997744 CAATACTCGGTGTTTGACGATTCGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTG
64 CAATACTCGATGTTTGACAATTCGGGAATCATACCCTATCGTGCTGGGTTGCAATTTCCCGTTTG
56997809 GTC
129 GTC
* ** ** *
56997812 AAAACAATCGAATATTCCTTTAGGTTTTGGCTCATGTTTCCTAAAAACTCATTAAAACGAAGGCA
1 AAAACAATCGAATATTCCTTCAGAATTTCACTCATATTTCCTAAAAACTCATTAAAACGAAGGCA
* * *
56997877 ATATTCGATGTTTGGCAATTCGGGGAAT-AGTACCCTATCGTGCTGGGTTGCAATTTCCCGTTTT
66 ATACTCGATGTTTGACAATTC-GGGAATCA-TACCCTATCGTGCTGGGTTGCAATTTCCCGTTTG
*
56997941 TTC
129 GTC
* * *
56997944 AAGATAATCGAATA-TCTCTTCAGAATTTCACTTATATT
1 AAAACAATCGAATATTC-CTTCAGAATTTCACTCATATT
56997982 CTCTAAAGGG
Statistics
Matches: 133, Mismatches: 32, Indels: 9
0.76 0.18 0.05
Matches are distributed among these distances:
130 4 0.03
131 65 0.49
132 64 0.48
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (131 bp):
AAAACAATCGAATATTCCTTCAGAATTTCACTCATATTTCCTAAAAACTCATTAAAACGAAGGCA
ATACTCGATGTTTGACAATTCGGGAATCATACCCTATCGTGCTGGGTTGCAATTTCCCGTTTGGT
C
Found at i:57000619 original size:3 final size:3
Alignment explanation
Indices: 57000613--57000654 Score: 59
Period size: 3 Copynumber: 13.7 Consensus size: 3
57000603 CATCATCATC
57000613 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATGT CATT ATT -TT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T -ATT ATT ATT AT
57000655 GTCAATTACT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 2 0.06
3 30 0.83
4 2 0.06
5 2 0.06
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:57001446 original size:15 final size:15
Alignment explanation
Indices: 57001428--57001456 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
57001418 TTCAAAAAAA
57001428 ATGGTTTCGACAGCT
1 ATGGTTTCGACAGCT
57001443 ATGGTTTCGACAGC
1 ATGGTTTCGACAGC
57001457 ATATTTGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.31
Consensus pattern (15 bp):
ATGGTTTCGACAGCT
Found at i:57003714 original size:19 final size:19
Alignment explanation
Indices: 57003690--57003728 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
57003680 CATGCTTTCA
57003690 AATGGAATGGGGGAATTGG
1 AATGGAATGGGGGAATTGG
57003709 AATGGAATGGGGGAATTGG
1 AATGGAATGGGGGAATTGG
57003728 A
1 A
57003729 TGTTCATACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.46, T:0.21
Consensus pattern (19 bp):
AATGGAATGGGGGAATTGG
Found at i:57005818 original size:62 final size:61
Alignment explanation
Indices: 57005703--57005818 Score: 153
Period size: 61 Copynumber: 1.9 Consensus size: 61
57005693 TTTTAATAAA
* * * *
57005703 CTAATACAAAGTAGTACCTAAATATTAATTTGGTTAAAATAAAGTTTAGTAATTGTAACAT
1 CTAATACAAAGTAGTACCTAAATATTAATTAGGTAAAAATAAAGTTAAATAATTGTAACAT
* *
57005764 CTAAGTACAAA-TGGTATCTAAATATTAATTAGGTAAAAAATAAAGTTAAATAATT
1 CTAA-TACAAAGTAGTACCTAAATATTAATTAGGT-AAAAATAAAGTTAAATAATT
57005819 ATAATATTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
61 24 0.51
62 23 0.49
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.34
Consensus pattern (61 bp):
CTAATACAAAGTAGTACCTAAATATTAATTAGGTAAAAATAAAGTTAAATAATTGTAACAT
Found at i:57005836 original size:61 final size:61
Alignment explanation
Indices: 57005703--57005822 Score: 152
Period size: 62 Copynumber: 2.0 Consensus size: 61
57005693 TTTTAATAAA
* * * * * * *
57005703 CTAA-TACAAAGTAGTACCTAAATATTAATTTGGTTAAAATAAAGTTTAGTAATTGTAACAT
1 CTAAGTACAAA-TGGTATCTAAATATTAATTAGGTAAAAATAAAGTTAAATAATTATAACAT
57005764 CTAAGTACAAATGGTATCTAAATATTAATTAGGTAAAAAATAAAGTTAAATAATTATAA
1 CTAAGTACAAATGGTATCTAAATATTAATTAGGT-AAAAATAAAGTTAAATAATTATAA
57005823 TATTTAATGC
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
61 24 0.48
62 26 0.52
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (61 bp):
CTAAGTACAAATGGTATCTAAATATTAATTAGGTAAAAATAAAGTTAAATAATTATAACAT
Found at i:57006972 original size:77 final size:77
Alignment explanation
Indices: 57006845--57007000 Score: 312
Period size: 77 Copynumber: 2.0 Consensus size: 77
57006835 GTTAGTATTT
57006845 CGTGAGATGTGTTGCATGATGATTATTGATGGTCTATAAAACCAATAAACTATCTTTTGCTACTC
1 CGTGAGATGTGTTGCATGATGATTATTGATGGTCTATAAAACCAATAAACTATCTTTTGCTACTC
57006910 TACTAATATGAC
66 TACTAATATGAC
57006922 CGTGAGATGTGTTGCATGATGATTATTGATGGTCTATAAAACCAATAAACTATCTTTTGCTACTC
1 CGTGAGATGTGTTGCATGATGATTATTGATGGTCTATAAAACCAATAAACTATCTTTTGCTACTC
57006987 TACTAATATGAC
66 TACTAATATGAC
57006999 CG
1 CG
57007001 CATTTCGGTG
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 79 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (77 bp):
CGTGAGATGTGTTGCATGATGATTATTGATGGTCTATAAAACCAATAAACTATCTTTTGCTACTC
TACTAATATGAC
Found at i:57009331 original size:28 final size:28
Alignment explanation
Indices: 57009243--57009331 Score: 74
Period size: 28 Copynumber: 3.1 Consensus size: 28
57009233 TTCCCAATAG
* *
57009243 AAAAAAGCTTATGTACCAAATT-AGGAA
1 AAAAAAGCTTAAGTACCAAATTAAAGAA
* *
57009270 AAATGTCAAAG-TTCAAGTACCAAATTAGACAA
1 AAA----AAAGCTT-AAGTACCAAATTAAAGAA
*
57009302 AAAAAAGCTTAGGTACCAAATTAAAGAA
1 AAAAAAGCTTAAGTACCAAATTAAAGAA
57009330 AA
1 AA
57009332 TGTCAAATTC
Statistics
Matches: 48, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
27 3 0.06
28 21 0.44
29 2 0.04
30 2 0.04
31 15 0.31
32 5 0.10
ACGTcount: A:0.54, C:0.12, G:0.13, T:0.20
Consensus pattern (28 bp):
AAAAAAGCTTAAGTACCAAATTAAAGAA
Found at i:57009625 original size:20 final size:20
Alignment explanation
Indices: 57009600--57009637 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
57009590 TATTTTGTGT
57009600 AATTACATAAAATATTACTA
1 AATTACATAAAATATTACTA
*
57009620 AATTACATAAATTATTAC
1 AATTACATAAAATATTAC
57009638 AACATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.37
Consensus pattern (20 bp):
AATTACATAAAATATTACTA
Found at i:57009666 original size:59 final size:58
Alignment explanation
Indices: 57009549--57009698 Score: 158
Period size: 59 Copynumber: 2.5 Consensus size: 58
57009539 ATTATTTAAA
* * ** * * * *
57009549 AAAATATTTCTCAATTACATAAATTATTATAATTTTTGTGATATTTTGTGTAATTACAT
1 AAAATATTACT-AATTACATAAATTATTACAACATTTATGATATTCTGTATAAATACAT
*
57009608 AAAATATTACTAAATTACATAAATTATTACAACATTTAT-AGTGTTCTGTATAAATACAT
1 AAAATATTACT-AATTACATAAATTATTACAACATTTATGA-TATTCTGTATAAATACAT
* *
57009667 AAAATATTATCTAATTACACAAATTACTACAA
1 AAAATATTA-CTAATTACATAAATTATTACAA
57009699 ATCTAATATT
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
58 1 0.01
59 74 0.96
60 2 0.03
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (58 bp):
AAAATATTACTAATTACATAAATTATTACAACATTTATGATATTCTGTATAAATACAT
Found at i:57011552 original size:25 final size:25
Alignment explanation
Indices: 57011524--57011574 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
57011514 GGTTTTGTCA
57011524 ATAG-TTTAATGGTTTTATGTT-GTTC
1 ATAGCTTT-ATGGTTTTAT-TTGGTTC
*
57011549 ATAGCTTTGTGGTTTTATTTGGTTC
1 ATAGCTTTATGGTTTTATTTGGTTC
57011574 A
1 A
57011575 CATTTTTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 2 0.09
25 18 0.78
26 3 0.13
ACGTcount: A:0.18, C:0.06, G:0.22, T:0.55
Consensus pattern (25 bp):
ATAGCTTTATGGTTTTATTTGGTTC
Found at i:57012536 original size:19 final size:20
Alignment explanation
Indices: 57012499--57012535 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
57012489 AAAATATTGT
*
57012499 AAAAAGTTATTAAAATTTTC
1 AAAAAGTTAGTAAAATTTTC
57012519 AAAAA-TTAGT-AAATTTT
1 AAAAAGTTAGTAAAATTTT
57012536 TTTGTATCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 7 0.44
19 4 0.25
20 5 0.31
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (20 bp):
AAAAAGTTAGTAAAATTTTC
Found at i:57012649 original size:20 final size:21
Alignment explanation
Indices: 57012620--57012679 Score: 68
Period size: 20 Copynumber: 2.8 Consensus size: 21
57012610 TTAAAATATA
*
57012620 ATCAACTTTTTAAT-TTTTAC
1 ATCAAATTTTTAATATTTTAC
*
57012640 ATCAAATTTTTAATATTTTAA
1 ATCAAATTTTTAATATTTTAC
57012661 ATACATAAATTTTTAATAT
1 AT-C--AAATTTTTAATAT
57012680 GTTCTAGTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.38
21 7 0.21
22 1 0.03
24 13 0.38
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (21 bp):
ATCAAATTTTTAATATTTTAC
Found at i:57013162 original size:20 final size:20
Alignment explanation
Indices: 57013126--57013165 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
57013116 AAAAATCTTA
*
57013126 TTTTATTTTAATTTTAAATT
1 TTTTATTTTAATATTAAATT
57013146 TTTTAATTTT-ATATTAAATT
1 TTTT-ATTTTAATATTAAATT
57013166 AGTTTAGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTATTTTAATATTAAATT
Found at i:57013171 original size:21 final size:21
Alignment explanation
Indices: 57013130--57013171 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 21
57013120 ATCTTATTTT
* *
57013130 ATTTTAATTTTAAATTTTTTA
1 ATTTTAATATTAAATTGTTTA
57013151 ATTTT-ATATTAAATTAGTTTA
1 ATTTTAATATTAAATT-GTTTA
57013172 GGCTAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
ATTTTAATATTAAATTGTTTA
Found at i:57017235 original size:17 final size:17
Alignment explanation
Indices: 57017210--57017244 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
57017200 ACCAGATGTT
*
57017210 AGAACGTTTAGTTGGGA
1 AGAACGTTTAGCTGGGA
*
57017227 AGAATGTTTAGCTGGGA
1 AGAACGTTTAGCTGGGA
57017244 A
1 A
57017245 ATCTTATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.34, T:0.29
Consensus pattern (17 bp):
AGAACGTTTAGCTGGGA
Found at i:57020477 original size:12 final size:13
Alignment explanation
Indices: 57020453--57020482 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
57020443 ATATAGCATC
57020453 TCCTCTATTTTTT
1 TCCTCTATTTTTT
57020466 TCCTCT-TTTTTT
1 TCCTCTATTTTTT
57020478 TCCTC
1 TCCTC
57020483 ATCACCAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (13 bp):
TCCTCTATTTTTT
Found at i:57022632 original size:20 final size:20
Alignment explanation
Indices: 57022604--57022642 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
57022594 GTTTTTTGTA
57022604 CATTATTATAAATATATATG
1 CATTATTATAAATATATATG
*
57022624 CATTTTTATAAATATATAT
1 CATTATTATAAATATATAT
57022643 ACTTTATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.49
Consensus pattern (20 bp):
CATTATTATAAATATATATG
Found at i:57025724 original size:4 final size:4
Alignment explanation
Indices: 57025715--57025752 Score: 51
Period size: 4 Copynumber: 9.2 Consensus size: 4
57025705 TTGCTTGTAC
57025715 ATAA ATAA ATAA ATAAA ATGAA A-AA ATAA ATAA ATAA A
1 ATAA ATAA ATAA AT-AA AT-AA ATAA ATAA ATAA ATAA A
57025753 GGCTCAAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
3 3 0.10
4 21 0.68
5 7 0.23
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (4 bp):
ATAA
Found at i:57030403 original size:18 final size:18
Alignment explanation
Indices: 57030362--57030396 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
57030352 GTACTAGGTA
*
57030362 GATAAAAATGAATACTAC
1 GATAAAAATGAATAATAC
57030380 GATAAAAA-GAATAATAC
1 GATAAAAATGAATAATAC
57030397 ATATAAAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.60, C:0.09, G:0.11, T:0.20
Consensus pattern (18 bp):
GATAAAAATGAATAATAC
Found at i:57030580 original size:3 final size:3
Alignment explanation
Indices: 57030572--57030608 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
57030562 TTTACAAAAT
57030572 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
57030609 CATTTAACAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:57030726 original size:7 final size:7
Alignment explanation
Indices: 57030714--57030743 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
57030704 TTTTAAATAG
57030714 TATATAA
1 TATATAA
57030721 TATATAA
1 TATATAA
57030728 TATATAA
1 TATATAA
57030735 TATATAA
1 TATATAA
57030742 TA
1 TA
57030744 ACAAGAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TATATAA
Found at i:57030867 original size:19 final size:18
Alignment explanation
Indices: 57030827--57030865 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
57030817 TTTTAAAATG
*
57030827 AAATAATATATAATAGAT
1 AAATAATAAATAATAGAT
57030845 AAATAAATAAATAATA-AT
1 AAAT-AATAAATAATAGAT
57030863 AAA
1 AAA
57030866 ATGTGTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (18 bp):
AAATAATAAATAATAGAT
Found at i:57031028 original size:24 final size:24
Alignment explanation
Indices: 57030978--57031031 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
57030968 TATAATATTT
*
57030978 ATAAAAATAATAAGTGGTATAGAA
1 ATAAAAATAATAAATGGTATAGAA
* *
57031002 ATAAAACATAATAAATGTTATA-TA
1 ATAAAA-ATAATAAATGGTATAGAA
57031026 ATAAAA
1 ATAAAA
57031032 TATATAGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (24 bp):
ATAAAAATAATAAATGGTATAGAA
Found at i:57031148 original size:47 final size:44
Alignment explanation
Indices: 57031097--57031197 Score: 102
Period size: 47 Copynumber: 2.2 Consensus size: 44
57031087 TAAAATAATG
*
57031097 TATAAATAATA-AT-AAATATATAATATATGTGAAAATATAACAATATA
1 TATAAATAATATATAAAATA-ATAAT-T-TGAGAAAA-ATAACAA-ATA
*
57031144 TATAAAAAATGATATAAAATAATAATTTGAGAAAAATAACAAATA
1 TATAAATAAT-ATATAAAATAATAATTTGAGAAAAATAACAAATA
57031189 -AT-AATAATA
1 TATAAATAATA
57031198 CACATAATAA
Statistics
Matches: 48, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
42 1 0.02
43 5 0.10
44 2 0.04
45 3 0.06
46 7 0.15
47 16 0.33
48 2 0.04
49 7 0.15
50 5 0.10
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (44 bp):
TATAAATAATATATAAAATAATAATTTGAGAAAAATAACAAATA
Found at i:57031310 original size:19 final size:20
Alignment explanation
Indices: 57031273--57031312 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
57031263 AATAAAACAA
*
57031273 ATAATAAATATATATATAGG
1 ATAATAAATATAAATATAGG
57031293 ATAATAAA-ATAAATATAGG
1 ATAATAAATATAAATATAGG
57031312 A
1 A
57031313 CTGAATTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (20 bp):
ATAATAAATATAAATATAGG
Found at i:57032938 original size:83 final size:82
Alignment explanation
Indices: 57032790--57032970 Score: 231
Period size: 83 Copynumber: 2.2 Consensus size: 82
57032780 GATTTGTGGG
* * *
57032790 GATGCCAAATCAACTTGAGTCTGTTTTGAGAACATCTGAGAGTCAAATCTGCTACGTCCTTGATT
1 GATGCCAAATCATCTTGAGTCTGTTTTGAGAACATCTGAGAGTCAAATCTGCAACGTCCTCGATT
57032855 TG-TTCTTTGTAAGCACAAA
66 TGTTTC-TTGTAA--ACAAA
* * * * *
57032874 GATGCCAAACCATCTTGAGTCTG-TTTGAGAACATTTGAGAGTCATATCTGCAATGTTCTCGATT
1 GATGCCAAATCATCTTGAGTCTGTTTTGAGAACATCTGAGAGTCAAATCTGCAACGTCCTCGATT
57032938 TGTTTCTTGTAAACAAA
66 TGTTTCTTGTAAACAAA
* *
57032955 AATACCAAATCATCTT
1 GATGCCAAATCATCTT
57032971 TGATCTGCTT
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
81 18 0.21
83 43 0.51
84 24 0.28
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (82 bp):
GATGCCAAATCATCTTGAGTCTGTTTTGAGAACATCTGAGAGTCAAATCTGCAACGTCCTCGATT
TGTTTCTTGTAAACAAA
Found at i:57033311 original size:118 final size:119
Alignment explanation
Indices: 57032899--57033362 Score: 749
Period size: 119 Copynumber: 3.9 Consensus size: 119
57032889 TGAGTCTGTT
* * * * *
57032899 TGAGAACATTTGAGAGTCATATCTGCAATGTTCTCGATTTGTTTCTTGTAAACA-AA-AATACCA
1 TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
* *
57032962 AATCATCTTTGATCTGCTTCAGTATAAACATCTGAAGAT-TAGATCCACTATATC
66 AATCATCTTGGATCTGCTTCAATATAAACATCTGAAG-TCTAGATCCACTATATC
57033016 TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
* **
57033081 AATCATCTTGGATCTGCTTCAATATAAATATCTGAAGTCTAGATCTTCTATATC
66 AATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCCACTATATC
57033135 TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
* *
57033200 AATCATCTTGGATCTG-TTCAGTATAAACATCTGAAGAT-TAGATCCGCTATATC
66 AATCATCTTGGATCTGCTTCAATATAAACATCTGAAG-TCTAGATCCACTATATC
57033253 TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
* *
57033318 AATCATCTTGGATCTGCTTCAACATAAATATCTGAAGTCTAGATC
66 AATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATC
57033363 TGCTGTCTTC
Statistics
Matches: 324, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
117 49 0.15
118 116 0.36
119 159 0.49
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (119 bp):
TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
AATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCCACTATATC
Found at i:57033313 original size:237 final size:236
Alignment explanation
Indices: 57032899--57033363 Score: 833
Period size: 237 Copynumber: 2.0 Consensus size: 236
57032889 TGAGTCTGTT
* * * *
57032899 TGAGAACATTTGAGAGTCATATCTGCAATGTTCTCGATTTGTTTCTTGTAAACAAAAATACCAAA
1 TGAGAACATCTGAGAGTCAAATCTACAATGTCCTCGATTTGTTTCTTGTAAACAAAAATACCAAA
*
57032964 TCATCTTTGATCTGCTTCAGTATAAACATCTGAAGATTAGATCCACTATATCTGAGAACATCTGA
66 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGATTAGATCCACTATATCTGAGAACATCTGA
57033029 GAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTGGAT
131 GAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTGGAT
*
57033094 CTGCTTCAATATAAATATCTGAAGTCTAGATCTTCTATATC
196 CTGCTTCAACATAAATATCTGAAGTCTAGATCTTCTATATC
*
57033135 TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTACAATGTCCTCGATTTGTTTCTTGTAAACA-AA-AATACCA
*
57033200 AATCATCTTGGATCTG-TTCAGTATAAACATCTGAAGATTAGATCCGCTATATCTGAGAACATCT
64 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGATTAGATCCACTATATCTGAGAACATCT
57033264 GAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTGG
129 GAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTGG
57033329 ATCTGCTTCAACATAAATATCTGAAGTCTAGATCT
194 ATCTGCTTCAACATAAATATCTGAAGTCTAGATCT
57033364 GCTGTCTTCA
Statistics
Matches: 219, Mismatches: 8, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
236 49 0.22
237 148 0.68
238 22 0.10
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (236 bp):
TGAGAACATCTGAGAGTCAAATCTACAATGTCCTCGATTTGTTTCTTGTAAACAAAAATACCAAA
TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGATTAGATCCACTATATCTGAGAACATCTGA
GAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTGGAT
CTGCTTCAACATAAATATCTGAAGTCTAGATCTTCTATATC
Done.