Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 181 of 250
Found at i:57256006 original size:5 final size:5
Alignment explanation
Indices: 57255998--57256025 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
57255988 AATAAAAATC
57255998 TATTT TATTT TATTT TATTT TATTT TAT
1 TATTT TATTT TATTT TATTT TATTT TAT
57256026 GGTTGGCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:57268519 original size:13 final size:13
Alignment explanation
Indices: 57268501--57268532 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
57268491 TTTCCAGCAA
57268501 TTATGAATTTATT
1 TTATGAATTTATT
57268514 TTATGAATTTATT
1 TTATGAATTTATT
*
57268527 TGATGA
1 TTATGA
57268533 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:57268740 original size:50 final size:50
Alignment explanation
Indices: 57268627--57268868 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
57268617 ATTTGGGTAA
* * *
57268627 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
57268683 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
57268733 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
57268783 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
57268833 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
57268869 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:57268816 original size:100 final size:103
Alignment explanation
Indices: 57268627--57268876 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
57268617 ATTTGGGTAA
57268627 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
57268692 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
57268733 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
57268795 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
57268833 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
57268877 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:57271717 original size:69 final size:69
Alignment explanation
Indices: 57271642--57271781 Score: 253
Period size: 69 Copynumber: 2.0 Consensus size: 69
57271632 AGTTTTAACA
57271642 AAACATATTATCTACAAATAAACATTTTATGAAAAATATTATGAATATTTTATTAAATAGATATT
1 AAACATATTATCTACAAATAAACATTTTATGAAAAATATTATGAATATTTTATTAAATAGATATT
57271707 CATC
66 CATC
* * *
57271711 AAACATATTATCTACCAATAGACATTTTATGAAAAGTATTATGAATATTTTATTAAATAGATATT
1 AAACATATTATCTACAAATAAACATTTTATGAAAAATATTATGAATATTTTATTAAATAGATATT
57271776 CATC
66 CATC
57271780 AA
1 AA
57271782 TATCAAAATA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.39
Consensus pattern (69 bp):
AAACATATTATCTACAAATAAACATTTTATGAAAAATATTATGAATATTTTATTAAATAGATATT
CATC
Found at i:57276366 original size:26 final size:25
Alignment explanation
Indices: 57276348--57276401 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 25
57276338 ATATAATTGT
57276348 TATTTTTATATGTAAAATATTTCAAA
1 TATTTTTATATGTAAAATATTT-AAA
57276374 TATTTTTATATGTAAAATATTTTAAA
1 TATTTTTATATGTAAAATA-TTTAAA
57276400 TA
1 TA
57276402 CACATACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.52
Consensus pattern (25 bp):
TATTTTTATATGTAAAATATTTAAA
Found at i:57277643 original size:31 final size:31
Alignment explanation
Indices: 57277606--57277669 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
57277596 CACTCTATTA
* * *
57277606 TTTTTTTAGTGCATTATTATCTAATATATGT
1 TTTTTTTAGTACATTATCATCTAATACATGT
**
57277637 TTTTTTTTTTACATTATCATCTAATACATGT
1 TTTTTTTAGTACATTATCATCTAATACATGT
57277668 TT
1 TT
57277670 AACCACCATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.09, G:0.06, T:0.59
Consensus pattern (31 bp):
TTTTTTTAGTACATTATCATCTAATACATGT
Found at i:57294452 original size:12 final size:12
Alignment explanation
Indices: 57294437--57294461 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57294427 AAAAAAGAAA
57294437 AAAAAATAATTC
1 AAAAAATAATTC
57294449 AAAAAATAATTC
1 AAAAAATAATTC
57294461 A
1 A
57294462 CATTGGTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAAAATAATTC
Found at i:57310609 original size:19 final size:19
Alignment explanation
Indices: 57310571--57310609 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
57310561 CTACTAATTT
*
57310571 TATGGTGCGAAAGAATATA
1 TATGGTGCGAAAGAAAATA
57310590 TATGGTGC-AAAGATAAATA
1 TATGGTGCGAAAGA-AAATA
57310609 T
1 T
57310610 TGGAGTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.44, C:0.05, G:0.23, T:0.28
Consensus pattern (19 bp):
TATGGTGCGAAAGAAAATA
Found at i:57313884 original size:20 final size:21
Alignment explanation
Indices: 57313858--57313903 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
57313848 AGCCGGGATC
57313858 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
57313879 -CTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
57313899 ACTAA
1 ACTAA
57313904 TATAATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.33
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:57313897 original size:11 final size:11
Alignment explanation
Indices: 57313858--57313910 Score: 76
Period size: 11 Copynumber: 5.1 Consensus size: 11
57313848 AGCCGGGATC
57313858 ACTAA-CTAAT
1 ACTAATCTAAT
57313868 ACTAATCTAAT
1 ACTAATCTAAT
57313879 -CTAA-CTAAT
1 ACTAATCTAAT
57313888 ACTAATCTAAT
1 ACTAATCTAAT
*
57313899 ACTAATATAAT
1 ACTAATCTAAT
57313910 A
1 A
57313911 GAAAAATTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
9 5 0.13
10 13 0.33
11 21 0.54
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:57313910 original size:5 final size:6
Alignment explanation
Indices: 57313862--57313910 Score: 56
Period size: 5 Copynumber: 9.2 Consensus size: 6
57313852 GGGATCACTA
57313862 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -CTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
57313905 A-TAAT A
1 ACTAAT A
57313911 GAAAAATTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
4 3 0.08
5 18 0.46
6 18 0.46
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (6 bp):
ACTAAT
Found at i:57313923 original size:14 final size:15
Alignment explanation
Indices: 57313904--57313934 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
57313894 CTAATACTAA
57313904 TATAATAGAAAA-AT
1 TATAATAGAAAATAT
57313918 TATAATAGAAAATAT
1 TATAATAGAAAATAT
57313933 TA
1 TA
57313935 ATATAATAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (15 bp):
TATAATAGAAAATAT
Found at i:57313941 original size:18 final size:17
Alignment explanation
Indices: 57313896--57313946 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
57313886 ATACTAATCT
57313896 AATACTAATATAATAGAA
1 AATA-TAATATAATAGAA
57313914 AA-AT--TATAATAGAA
1 AATATAATATAATAGAA
57313928 AATATTAATATAATAGAA
1 AATA-TAATATAATAGAA
57313946 A
1 A
57313947 GAAAATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
14 12 0.41
15 1 0.03
16 2 0.07
17 1 0.03
18 13 0.45
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (17 bp):
AATATAATATAATAGAA
Found at i:57324283 original size:13 final size:13
Alignment explanation
Indices: 57324265--57324293 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
57324255 TTTAGTTTAA
57324265 TTAGTTAATTAGT
1 TTAGTTAATTAGT
57324278 TTAGTTAATTAGT
1 TTAGTTAATTAGT
57324291 TTA
1 TTA
57324294 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:57331391 original size:24 final size:24
Alignment explanation
Indices: 57331359--57331404 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
57331349 AAATTCAAAC
57331359 AAAAAAAATTAAAAT-CTTAAAAAT
1 AAAAAAAA-TAAAATACTTAAAAAT
*
57331383 AAAATAAATAAAATACTTAAAA
1 AAAAAAAATAAAATACTTAAAA
57331405 CTTATTTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (24 bp):
AAAAAAAATAAAATACTTAAAAAT
Found at i:57336849 original size:5 final size:5
Alignment explanation
Indices: 57336839--57336864 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
57336829 TAATTTTATA
57336839 AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG A
57336865 TATTAAGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:57336986 original size:30 final size:30
Alignment explanation
Indices: 57336950--57337011 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
57336940 CATCGATTTC
57336950 ACCATTTTTGGAAGCTCACTTAGGACTCAA
1 ACCATTTTTGGAAGCTCACTTAGGACTCAA
57336980 ACCATTTTTGGAAGCTCACTTAGGACTCAA
1 ACCATTTTTGGAAGCTCACTTAGGACTCAA
57337010 AC
1 AC
57337012 ATTCACTCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (30 bp):
ACCATTTTTGGAAGCTCACTTAGGACTCAA
Found at i:57341442 original size:25 final size:23
Alignment explanation
Indices: 57341411--57341461 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
57341401 CTTACTTTTA
57341411 TATTATATAT-TGTAAGATTATTT
1 TATTATATATAT-TAAGATTATTT
*
57341434 TATTATATATATTAATATTA-TT
1 TATTATATATATTAAGATTATTT
57341456 TATTAT
1 TATTAT
57341462 CTATTATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 8 0.31
23 17 0.65
24 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (23 bp):
TATTATATATATTAAGATTATTT
Found at i:57341612 original size:29 final size:29
Alignment explanation
Indices: 57341575--57341646 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 29
57341565 TTTTTACATA
*
57341575 TATACTTTCATTATTT-TATATTATCTATAT
1 TATA-TTTCATTATTTCTATA-TATCTAAAT
*
57341605 TATATTTC-TTATTTCCTATATATTTAAAT
1 TATATTTCATTATTT-CTATATATCTAAAT
*
57341634 TATATTTTATTAT
1 TATATTTCATTAT
57341647 ATAACATTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 6 0.17
29 18 0.50
30 12 0.33
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.61
Consensus pattern (29 bp):
TATATTTCATTATTTCTATATATCTAAAT
Found at i:57341675 original size:31 final size:30
Alignment explanation
Indices: 57341633--57341709 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 30
57341623 TATATTTAAA
*
57341633 TTATATTTTATTATATAACATTTATTATATTT
1 TTAT-TTTTATTATATAACACTTATTAT-TTT
* **
57341665 TTATTTTTATTCTATATTACTTATTATTTT
1 TTATTTTTATTATATAACACTTATTATTTT
57341695 TCT-TTTTT-TTATATA
1 T-TATTTTTATTATATA
57341710 TGTTATGTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 6 0.15
30 9 0.23
31 20 0.51
32 4 0.10
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (30 bp):
TTATTTTTATTATATAACACTTATTATTTT
Found at i:57341774 original size:12 final size:12
Alignment explanation
Indices: 57341721--57341776 Score: 51
Period size: 12 Copynumber: 4.3 Consensus size: 12
57341711 GTTATGTATA
57341721 TCATATATATTA-
1 TCAT-TATATTAT
57341733 TCTATTATATTAT
1 TC-ATTATATTAT
*
57341746 TTATGTTTATATTAT
1 TCA---TTATATTAT
57341761 TCATTATATTAT
1 TCATTATATTAT
57341773 TCAT
1 TCAT
57341777 AATTTTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
12 23 0.62
13 3 0.08
15 11 0.30
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (12 bp):
TCATTATATTAT
Found at i:57346148 original size:18 final size:20
Alignment explanation
Indices: 57346125--57346164 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
57346115 CTTTCCTCAA
*
57346125 AAGAAAT-AGAA-TTTTATT
1 AAGAAATAAGAAGTTTGATT
57346143 AAGAAATAAGAAGTTTGATT
1 AAGAAATAAGAAGTTTGATT
57346163 AA
1 AA
57346165 CTAAAAATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 4 0.21
20 8 0.42
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.33
Consensus pattern (20 bp):
AAGAAATAAGAAGTTTGATT
Found at i:57347717 original size:24 final size:24
Alignment explanation
Indices: 57347690--57347741 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
57347680 TTAGCAAGTC
*
57347690 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
57347714 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
57347738 AAAT
1 AAAT
57347742 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:57349845 original size:25 final size:25
Alignment explanation
Indices: 57349804--57349853 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
57349794 TAATAATAAA
* *
57349804 TAAATATATTAATTTATTTTTATAT
1 TAAATAAATTAATTTATTTATATAT
57349829 TAAATAAATATAA-TTATTTATATAT
1 TAAATAAAT-TAATTTATTTATATAT
57349854 GTAATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TAAATAAATTAATTTATTTATATAT
Found at i:57349864 original size:29 final size:30
Alignment explanation
Indices: 57349796--57349870 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 30
57349786 TTTTAATTTA
* *
57349796 ATAATAAATAAATAT-ATTAATTTATTTTT
1 ATAATAAATAAATATAATTAATTTATATAT
*
57349825 ATATTAAATAAATATAATT-ATTTATATAT
1 ATAATAAATAAATATAATTAATTTATATAT
* *
57349854 GTAATATATAAATATAA
1 ATAATAAATAAATATAA
57349871 AATGATATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
29 36 0.92
30 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (30 bp):
ATAATAAATAAATATAATTAATTTATATAT
Found at i:57354414 original size:47 final size:47
Alignment explanation
Indices: 57354345--57354438 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
57354335 AAGACAACAG
* *
57354345 AATGTATGAATTATTTAATAAAATGAGTAGGAGCTGTGGCATGTCCA
1 AATGTATGAAGTATTTAATAAAATGAGTAGGAGATGTGGCATGTCCA
57354392 AATGTATGAAGTATTTAATAAAATGAGTAGGAGATGTGGCATGTCCA
1 AATGTATGAAGTATTTAATAAAATGAGTAGGAGATGTGGCATGTCCA
57354439 TCAAACTTCC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.31
Consensus pattern (47 bp):
AATGTATGAAGTATTTAATAAAATGAGTAGGAGATGTGGCATGTCCA
Found at i:57355499 original size:26 final size:26
Alignment explanation
Indices: 57355469--57355518 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
57355459 AAGAAAAGGT
57355469 ATTTCCCACCGACAACTAAAGGGGTC
1 ATTTCCCACCGACAACTAAAGGGGTC
57355495 ATTTCCCACCGACAACTAAAGGGG
1 ATTTCCCACCGACAACTAAAGGGG
57355519 ATACTTTGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.30, G:0.20, T:0.18
Consensus pattern (26 bp):
ATTTCCCACCGACAACTAAAGGGGTC
Found at i:57359041 original size:11 final size:11
Alignment explanation
Indices: 57359027--57359067 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
57359017 TGTTTTCTCT
57359027 CTATTTTGCTA
1 CTATTTTGCTA
*
57359038 CTATTTTACTA
1 CTATTTTGCTA
* *
57359049 TTATGTTGCTA
1 CTATTTTGCTA
57359060 CTATTTTG
1 CTATTTTG
57359068 TTATTATTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:57359138 original size:30 final size:31
Alignment explanation
Indices: 57359104--57359167 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
57359094 ACTTATTTTA
57359104 TTGTTAATTTTGTT-ATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTAATTATTTTAAAGGCAT
* *
57359134 TTGTTAATTTTTTTAATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTAATTATTTTAAAGGCAT
57359165 TTG
1 TTG
57359168 CTTATTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 13 0.42
31 18 0.58
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.58
Consensus pattern (31 bp):
TTGTTAATTTTGTTAATTATTTTAAAGGCAT
Found at i:57359779 original size:30 final size:30
Alignment explanation
Indices: 57359743--57359811 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
57359733 GGTTTCATTT
57359743 CAGTCACTCAAC-T-TTAGAAAAATGACAAAA
1 CAGTCACT-AACGTATTA-AAAAATGACAAAA
*
57359773 CAGTCACTAACGTTATTAAAAAATGACAAAT
1 CAGTCACTAACG-TATTAAAAAATGACAAAA
57359804 CAGTCACT
1 CAGTCACT
57359812 TATTATCATT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
29 3 0.09
30 8 0.23
31 21 0.60
32 3 0.09
ACGTcount: A:0.46, C:0.20, G:0.10, T:0.23
Consensus pattern (30 bp):
CAGTCACTAACGTATTAAAAAATGACAAAA
Found at i:57362031 original size:23 final size:21
Alignment explanation
Indices: 57361977--57362041 Score: 58
Period size: 23 Copynumber: 2.9 Consensus size: 21
57361967 ATGACGAAAT
57361977 TTAATTATAATTTTTTTATAAAA
1 TTAATTATAA-TTTTTTAT-AAA
* * *
57362000 TAAAATATAAGTTTTTTATATA
1 TTAATTATAA-TTTTTTATAAA
57362022 TTAATTTATAATTTTATTAT
1 TTAA-TTATAATTTT-TTAT
57362042 TTTTGAAGGA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 9 0.26
23 25 0.74
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TTAATTATAATTTTTTATAAA
Found at i:57362122 original size:15 final size:15
Alignment explanation
Indices: 57362102--57362132 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
57362092 TAATTTTACT
57362102 ATATATTAATCTATA
1 ATATATTAATCTATA
*
57362117 ATATATTAATTTATA
1 ATATATTAATCTATA
57362132 A
1 A
57362133 ATTTTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (15 bp):
ATATATTAATCTATA
Found at i:57368881 original size:12 final size:13
Alignment explanation
Indices: 57368851--57368901 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 13
57368841 CAATTTAAAG
*
57368851 TAAAT-AATATTT
1 TAAATAAATAATT
57368863 TAAAATAAATAATT
1 T-AAATAAATAATT
*
57368877 T-AATAAACAATT
1 TAAATAAATAATT
57368889 TGAAATAAATAAT
1 T-AAATAAATAAT
57368902 AGGACAGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
12 12 0.38
13 4 0.12
14 16 0.50
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (13 bp):
TAAATAAATAATT
Found at i:57368988 original size:29 final size:27
Alignment explanation
Indices: 57368946--57369076 Score: 119
Period size: 29 Copynumber: 4.9 Consensus size: 27
57368936 AAACATATGT
*
57368946 AAAAGTTTGAAATAAATAATATATGAAA
1 AAAAGTTTAAAATAAATAATATAT-AAA
57368974 AAAAGGTTTAAAATAAATAATATATAAA
1 AAAA-GTTTAAAATAAATAATATATAAA
* *
57369002 AAGAA-ATTAAAATAGATAATATATAAA
1 AA-AAGTTTAAAATAAATAATATATAAA
*
57369029 ATAA-TTT--AA-AAATAATATATAACA
1 AAAAGTTTAAAATAAATAATATATAA-A
* * *
57369053 AAACAGTTTCAAATATACAATATA
1 AAA-AGTTTAAAATAAATAATATA
57369077 ATTTTTTTTA
Statistics
Matches: 86, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
23 12 0.14
24 5 0.06
25 1 0.01
26 7 0.08
27 21 0.24
28 11 0.13
29 29 0.34
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (27 bp):
AAAAGTTTAAAATAAATAATATATAAA
Found at i:57369002 original size:26 final size:25
Alignment explanation
Indices: 57368927--57369257 Score: 139
Period size: 26 Copynumber: 12.4 Consensus size: 25
57368917 AAATAAAATA
* * *
57368927 TAAAATAAAAAACATATGTAAAAGTT
1 TAAAATAAATAATATAT-AAAAAGTT
*
57368953 TGAAATAAATAATATATGAAAAAAAGGTT
1 TAAAATAAATAATATAT---AAAAA-GTT
*
57368982 TAAAATAAATAATATATAAAAAGAAAT
1 TAAAATAAATAATATATAAAAAG--TT
* *
57369009 TAAAATAGATAATATATAAAATAATT
1 TAAAATAAATAATATATAAAA-AGTT
*
57369035 TAAAA-ATAAT-ATATAACAAAACAGTT
1 TAAAATA-AATAATAT-ATAAAA-AGTT
* * * *****
57369061 TCAAATATACAATATA-ATTTTTTT
1 TAAAATAAATAATATATAAAAAGTT
* *
57369085 TAAAATAAGTAACATATAAAACAGTT
1 TAAAATAAATAATATATAAAA-AGTT
*
57369111 TAAACTAAATAATATATAAAATAGATAAAAGTT
1 TAAAATAAAT-A-ATAT---AT--A-AAAAGTT
*
57369144 TGAAATAAATAATATATAAAAAAGTT
1 TAAAATAAATAATATAT-AAAAAGTT
* **
57369170 TAAAATATATAATATATAAAAAAACT
1 TAAAATAAATAATATAT-AAAAAGTT
* * *
57369196 AAAAATAGATAATATATAAAATAATT
1 TAAAATAAATAATATATAAAA-AGTT
* *
57369222 CAAAA-AATAAAATATAATAAAACAGTT
1 TAAAATAA-ATAATAT-ATAAAA-AGTT
*
57369249 TAAAGTAAA
1 TAAAATAAA
57369258 AAGTCAAAGA
Statistics
Matches: 229, Mismatches: 52, Indels: 47
0.70 0.16 0.14
Matches are distributed among these distances:
24 13 0.06
25 13 0.06
26 108 0.47
27 41 0.18
28 12 0.05
29 19 0.08
31 6 0.03
32 1 0.00
33 13 0.06
34 3 0.01
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.30
Consensus pattern (25 bp):
TAAAATAAATAATATATAAAAAGTT
Found at i:57369030 original size:16 final size:16
Alignment explanation
Indices: 57368982--57369031 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
57368972 AAAAAAGGTT
*
57368982 TAAAATAAATAATATA
1 TAAAATAGATAATATA
57368998 TAAAA-AG--AA-AT-
1 TAAAATAGATAATATA
57369009 TAAAATAGATAATATA
1 TAAAATAGATAATATA
57369025 TAAAATA
1 TAAAATA
57369032 ATTTAAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 10
0.72 0.03 0.26
Matches are distributed among these distances:
11 5 0.18
12 4 0.14
13 2 0.07
14 2 0.07
15 3 0.11
16 12 0.43
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (16 bp):
TAAAATAGATAATATA
Found at i:57369047 original size:23 final size:24
Alignment explanation
Indices: 57368988--57369050 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 24
57368978 GGTTTAAAAT
57368988 AAATAATATATAAAAAGAAATTAAA
1 AAATAATATAT-AAAAGAAATTAAA
* *
57369013 ATAGATAATATATAAAA-TAATTTAA
1 A-A-ATAATATATAAAAGAAATTAAA
57369038 AAATAATATATAA
1 AAATAATATATAA
57369051 CAAAACAGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
23 11 0.32
24 1 0.03
25 8 0.24
26 5 0.15
27 9 0.26
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (24 bp):
AAATAATATATAAAAGAAATTAAA
Found at i:57369199 original size:59 final size:59
Alignment explanation
Indices: 57369087--57369199 Score: 156
Period size: 59 Copynumber: 1.9 Consensus size: 59
57369077 ATTTTTTTTA
* * * *
57369087 AAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAGATAAAAGTTTG
1 AAATAAATAACATATAAAAAAGTTTAAAATAAATAATATATAAAATAAATAAAAGTTTG
* *
57369146 AAATAAATAATATATAAAAAAGTTTAAAATATATAATATATAAAA-AAACTAAAA
1 AAATAAATAACATATAAAAAAGTTTAAAATAAATAATATATAAAATAAA-TAAAA
57369200 ATAGATAATA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 2 0.04
59 45 0.96
ACGTcount: A:0.63, C:0.04, G:0.05, T:0.28
Consensus pattern (59 bp):
AAATAAATAACATATAAAAAAGTTTAAAATAAATAATATATAAAATAAATAAAAGTTTG
Found at i:57370537 original size:14 final size:15
Alignment explanation
Indices: 57370509--57370542 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
57370499 TAGACTATTC
57370509 ATTTTTTGGACTTTT
1 ATTTTTTGGACTTTT
*
57370524 ATTTTTTGG-GTTTT
1 ATTTTTTGGACTTTT
57370538 ATTTT
1 ATTTT
57370543 ATAAACTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.12, C:0.03, G:0.15, T:0.71
Consensus pattern (15 bp):
ATTTTTTGGACTTTT
Found at i:57370846 original size:51 final size:51
Alignment explanation
Indices: 57370772--57370868 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
57370762 AAGATTAGAC
*
57370772 TTGTAGCTTCAATCTTCTTTACTGCAACTTCAG-GAAGATAAGATTTGTGGT
1 TTGTAGCTTCAATCTTCTCTACTGCAACTTCAGAG-AGATAAGATTTGTGGT
* *
57370823 TTGTAGCTTTAAT-TTACTCTACTGCAACTTCAGAGAGATAATATTT
1 TTGTAGCTTCAATCTT-CTCTACTGCAACTTCAGAGAGATAAGATTT
57370869 TTTATCTTCA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
50 2 0.05
51 38 0.93
52 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.40
Consensus pattern (51 bp):
TTGTAGCTTCAATCTTCTCTACTGCAACTTCAGAGAGATAAGATTTGTGGT
Found at i:57371141 original size:46 final size:46
Alignment explanation
Indices: 57371030--57371284 Score: 157
Period size: 45 Copynumber: 5.7 Consensus size: 46
57371020 CGTAATCTAT
* * * * *
57371030 TCCACTGCAACTTCAGGGAAAAAAGATTTG-CTATCTTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATCTTCAACCTAC
* * * *
57371075 TCCACTGCAACTTCAAGGAGATAAGGTTTGTGTATTTTTATCCTAC
1 TCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATCTTCAACCTAC
* * * ** *
57371121 TCCACTGCAACTTCAGGGAGATAAGGATTGTG--GCTTCGATTTGC
1 TCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATCTTCAACCTAC
* * * * * *
57371165 TCCAATGTAATTTCAGGGAGA-AGAGG-TT-TGTAGCTTCGATCTAC
1 TCCACTGCAACTTCAGGGAGATA-AGGTTTGTGTATCTTCAACCTAC
* * * * ** *
57371209 TCCGCTGGAACCTCAAGGAGATAAGAATTG-GTAAT-TTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGGTTTGTGT-ATCTTCAACCTAC
* * *
57371254 TCCACTGCAACTTCAAGGAGATGAGATTTGT
1 TCCACTGCAACTTCAGGGAGATAAGGTTTGT
57371285 AATTTGCAGC
Statistics
Matches: 161, Mismatches: 40, Indels: 17
0.74 0.18 0.08
Matches are distributed among these distances:
42 2 0.01
43 3 0.02
44 52 0.32
45 63 0.39
46 41 0.25
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (46 bp):
TCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATCTTCAACCTAC
Found at i:57371272 original size:45 final size:45
Alignment explanation
Indices: 57371030--57371420 Score: 148
Period size: 45 Copynumber: 8.6 Consensus size: 45
57371020 CGTAATCTAT
* * * * *
57371030 TCCACTGCAACTTCAGGGAAAAAAGATTTGCT-ATCTTCAACCTGC
1 TCCACTGCAACTTCAAGGAGATAAGAATTGGTAAT-TTCAACCTGC
** * * * *
57371075 TCCACTGCAACTTCAAGGAGATAAGGTTTGTGTATTTTTATCCTAC
1 TCCACTGCAACTTCAAGGAGATAAGAATTG-GTAATTTCAACCTGC
* * *** * **
57371121 TCCACTGCAACTTCAGGGAGATAAGGATT-GTGGCTTCGATTTGC
1 TCCACTGCAACTTCAAGGAGATAAGAATTGGTAATTTCAACCTGC
* * * * * * ** * * *
57371165 TCCAATGTAATTTC-AGG-GAGAAGAGGTTTGTAGCTTCGATCTAC
1 TCCACTGCAACTTCAAGGAGATAAGA-ATTGGTAATTTCAACCTGC
* * *
57371209 TCCGCTGGAACCTCAAGGAGATAAGAATTGGTAATTTCAACCTGC
1 TCCACTGCAACTTCAAGGAGATAAGAATTGGTAATTTCAACCTGC
* * * *
57371254 TCCACTGCAACTTCAAGGAGATGAG-ATTTGTAATTTGCAGCCTTAATTTGT
1 TCCACTGCAACTTCAAGGAGATAAGAATTGGTAATTT-CAACC------TGC
* * * **
57371305 TCCACTGCAACTTCAGGGAAATAAG-ATTCGCT-ATCTTCAGTCTGC
1 TCCACTGCAACTTCAAGGAGATAAGAATT-GGTAAT-TTCAACCTGC
* * * * ** * *
57371350 TCCACTGCAACTTTAGGGAGATAAGACTTGCTTTTTTCAATCTGT
1 TCCACTGCAACTTCAAGGAGATAAGAATTGGTAATTTCAACCTGC
* * *
57371395 TTCACTGCAAGTTCAAGAAGATAAGA
1 TCCACTGCAACTTCAAGGAGATAAGA
57371421 TTCGTCATAA
Statistics
Matches: 261, Mismatches: 68, Indels: 34
0.72 0.19 0.09
Matches are distributed among these distances:
42 5 0.02
43 4 0.02
44 48 0.18
45 123 0.47
46 44 0.17
47 1 0.00
51 33 0.13
52 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (45 bp):
TCCACTGCAACTTCAAGGAGATAAGAATTGGTAATTTCAACCTGC
Found at i:57371284 original size:89 final size:90
Alignment explanation
Indices: 57371030--57371285 Score: 221
Period size: 89 Copynumber: 2.8 Consensus size: 90
57371020 CGTAATCTAT
* * * * * *
57371030 TCCACTGCAACTTCAGGGAAAAAAGATTTGCTATCTTCAACCTGCTCCACTGCAACTTCAAGGAG
1 TCCACTGCAACCTCAAGGAGATAAGAATTG-TAACTTCAACCTGCTCCACTGCAACTTCAAGGAG
* * **
57371095 ATAAGGTTTGT-GTATTTTTATCCTAC
65 ATGAGGTTTGTAG-ACTTCGATCCTAC
* * * ** * ** * * * *
57371121 TCCACTGCAACTTCAGGGAGATAAGGATTGTGGCTTCGATTTGCTCCAATGTAATTTCAGGGAGA
1 TCCACTGCAACCTCAAGGAGATAAGAATTGTAACTTCAACCTGCTCCACTGCAACTTCAAGGAGA
*
57371186 AGAGGTTTGTAG-CTTCGAT-CTAC
66 TGAGGTTTGTAGACTTCGATCCTAC
* * *
57371209 TCCGCTGGAACCTCAAGGAGATAAGAATTGGTAATTTCAACCTGCTCCACTGCAACTTCAAGGAG
1 TCCACTGCAACCTCAAGGAGATAAGAATT-GTAACTTCAACCTGCTCCACTGCAACTTCAAGGAG
*
57371274 ATGAGATTTGTA
65 ATGAGGTTTGTA
57371286 ATTTGCAGCC
Statistics
Matches: 128, Mismatches: 35, Indels: 6
0.76 0.21 0.04
Matches are distributed among these distances:
88 28 0.22
89 39 0.30
90 34 0.27
91 27 0.21
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (90 bp):
TCCACTGCAACCTCAAGGAGATAAGAATTGTAACTTCAACCTGCTCCACTGCAACTTCAAGGAGA
TGAGGTTTGTAGACTTCGATCCTAC
Found at i:57375303 original size:11 final size:11
Alignment explanation
Indices: 57375287--57375326 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
57375277 GGCCTCTCCC
57375287 TTTTCTTTTCT
1 TTTTCTTTTCT
57375298 TTTTCTTTTC-
1 TTTTCTTTTCT
57375308 -TTTCTTTCTCT
1 TTTTCTTT-TCT
57375319 TTTT-TTTT
1 TTTTCTTTT
57375327 AAGTGAAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
9 7 0.27
10 3 0.12
11 13 0.50
12 3 0.12
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTCTTTTCT
Found at i:57375313 original size:15 final size:16
Alignment explanation
Indices: 57375286--57375325 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
57375276 TGGCCTCTCC
*
57375286 CTTTTCTTTTCTTTTT
1 CTTTTCTTTTCTTTCT
57375302 CTTTTC-TTTCTTTCT
1 CTTTTCTTTTCTTTCT
57375317 CTTTT-TTTT
1 CTTTTCTTTT
57375326 TAAGTGAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (16 bp):
CTTTTCTTTTCTTTCT
Found at i:57375313 original size:20 final size:20
Alignment explanation
Indices: 57375288--57375326 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
57375278 GCCTCTCCCT
57375288 TTTCTTT-TCTTTTTCTTTTC
1 TTTCTTTCTCTTTTT-TTTTC
57375308 TTTCTTTCTCTTTTTTTTT
1 TTTCTTTCTCTTTTTTTTT
57375327 AAGTGAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTCTTTCTCTTTTTTTTTC
Found at i:57381883 original size:16 final size:17
Alignment explanation
Indices: 57381851--57381897 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
57381841 CGAAGAAAAC
57381851 AAAACAAAA-TAATATAT
1 AAAA-AAAATTAATATAT
57381868 AAAAAAAATTAAATATAT
1 AAAAAAAATT-AATATAT
*
57381886 AAAAAAATTTAA
1 AAAAAAAATTAA
57381898 AGTAAATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 4 0.15
17 7 0.26
18 16 0.59
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAAAAAATTAATATAT
Found at i:57381897 original size:18 final size:18
Alignment explanation
Indices: 57381861--57381898 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
57381851 AAAACAAAAT
57381861 AATATATAAAAAAAATTA
1 AATATATAAAAAAAATTA
*
57381879 AATATATAAAAAAATTTA
1 AATATATAAAAAAAATTA
57381897 AA
1 AA
57381899 GTAAATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AATATATAAAAAAAATTA
Found at i:57381906 original size:19 final size:18
Alignment explanation
Indices: 57381861--57381906 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
57381851 AAAACAAAAT
*
57381861 AATATATAAAAAAAATTA
1 AATAAATAAAAAAAATTA
* *
57381879 AATATATAAAAAAATTTA
1 AATAAATAAAAAAAATTA
57381897 AAGTAAATAA
1 AA-TAAATAA
57381907 TATTTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (18 bp):
AATAAATAAAAAAAATTA
Found at i:57381998 original size:75 final size:75
Alignment explanation
Indices: 57381915--57382055 Score: 178
Period size: 74 Copynumber: 1.9 Consensus size: 75
57381905 AATATTTTAA
* * * * * *
57381915 AATAAATAATTTATAAAAC-GTTTTGAAATAAATAATAGGACAATTTT-AAATAAATAATATATA
1 AATAAATAA-TAATAAAACAG-TTTCAAATAAACAATAGAAAAATTTTAAAATAAATAACATATA
57381978 AAAAAAACTTAT
64 AAAAAAACTTAT
* *
57381990 AATAAATAATAATAAAACAGTTTCAAATATACAATATAAAAATTTTAAAATAAATAACATATAAA
1 AATAAATAATAATAAAACAGTTTCAAATAAACAATAGAAAAATTTTAAAATAAATAACATATAAA
57382055 A
66 A
57382056 CAGTTTAAAC
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
74 28 0.50
75 28 0.50
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (75 bp):
AATAAATAATAATAAAACAGTTTCAAATAAACAATAGAAAAATTTTAAAATAAATAACATATAAA
AAAAACTTAT
Found at i:57382018 original size:25 final size:25
Alignment explanation
Indices: 57381959--57382795 Score: 180
Period size: 26 Copynumber: 33.8 Consensus size: 25
57381949 ATAGGACAAT
* *
57381959 TTTAAATAAATAATATATAAAAAAAA
1 TTTAAATAAATAATATAT-AAAACAG
*
57381985 CTTATAATAAATAATA-ATAAAACAG
1 TTTA-AATAAATAATATATAAAACAG
*
57382010 TTTCAAAT--ATACA-ATATAAAA-AT
1 TTT-AAATAAATA-ATATATAAAACAG
*
57382033 TTTAAAATAAATAACATATAAAACAG
1 TTT-AAATAAATAATATATAAAACAG
57382059 TTTAAACTAAATAATATATAAAA-A-
1 TTTAAA-TAAATAATATATAAAACAG
* * *
57382083 -AT-AAT-AA-CATATGT-AAA-AG
1 TTTAAATAAATAATATATAAAACAG
*
57382102 TTTGAAATAAATAATATATGAAAAAAAGG
1 TTT-AAATAAATAATATAT--AAAACA-G
* * *
57382131 TTTAAAATACATAATATATAAAAAAAC
1 TTT-AAATAAATAATATAT-AAAACAG
* *
57382158 TTAAAATAGATAATATATAAATA-A-
1 TTTAAATAAATAATATATAAA-ACAG
* *
57382182 TTTAAAAATAAT-ATATAATAAAACAA
1 TTTAAATA-AATAATAT-ATAAAACAG
* * ******
57382208 TTTCAAATATACAATATA-ATTTTTT
1 TTT-AAATAAATAATATATAAAACAG
* *
57382233 TTTAAAATAAGTAACATATAAAACAG
1 TTT-AAATAAATAATATATAAAACAG
57382259 TTTAAACTAAATAATATAT-AAA-A-
1 TTTAAA-TAAATAATATATAAAACAG
* * **
57382282 --TAAAT-AA-CATATGTAAAA-GT
1 TTTAAATAAATAATATATAAAACAG
* * *
57382302 TTGACATAAATAATATATGAAAAAAAGG
1 TTTAAATAAATAATATAT--AAAACA-G
* *
57382330 TTTAAAATAAATAATATATAAAAAAAC
1 TTT-AAATAAATAATATAT-AAAACAG
* * * *
57382357 TTAAAATAGATAATATATAAAATAA
1 TTTAAATAAATAATATATAAAACAG
*
57382382 TTTAAAAATAAT-ATATAATAAAACAG
1 TTTAAATA-AATAATAT-ATAAAACAG
***
57382408 TTTCAAAT--ATACA-ATAT--AATTT
1 TTT-AAATAAATA-ATATATAAAACAG
*
57382430 TTTAAAAAAAATAAGTAACATATAAAACAG
1 TTT-AAATAAATAA-T---ATATAAAACAG
*
57382460 TTTAAACTAGATAATATAT-AAA-A-
1 TTTAAA-TAAATAATATATAAAACAG
* *
57382483 --TAGATAAAT--TATGT-AAA-AG
1 TTTAAATAAATAATATATAAAACAG
*
57382502 TTTGAAATAAATAATATATAAAAAAG
1 TTT-AAATAAATAATATATAAAACAG
* *
57382528 TTTAAAATAAATAATATATAAAAAAAC
1 TTT-AAATAAATAATATAT-AAAACAG
* * * *
57382555 TTAAAATAGATAATATATAAAATAA
1 TTTAAATAAATAATATATAAAACAG
* *
57382580 TTT-AA-AAATCATATATAACAAAACTG
1 TTTAAATAAAT-A-ATAT-ATAAAACAG
* * ****
57382606 TTTCAAATATACAA-A-AT-AATTTT
1 TTT-AAATAAATAATATATAAAACAG
* *
57382629 TTTAAAAATAAGTAACATATAAAACAG
1 TTT--AAATAAATAATATATAAAACAG
57382656 TTTAAACTAAATAATATAT-AAA-A-
1 TTTAAA-TAAATAATATATAAAACAG
* * * **
57382679 --TAGAT-AA-CATATGTAAAA-GT
1 TTTAAATAAATAATATATAAAACAG
* *
57382699 TTGAAATAAATAATATATAAAAAAAG
1 TTTAAATAAATAATATAT-AAAACAG
* *
57382725 TTTAAAATAAATAATATATAAAAAAAC
1 TTT-AAATAAATAATATAT-AAAACAG
* * * * *
57382752 TTAAAATAGATCATATATAAAATAA
1 TTTAAATAAATAATATATAAAACAG
57382777 TTTAAA-AAATAATATATAA
1 TTTAAATAAATAATATATAA
57382796 TAAAATAGTT
Statistics
Matches: 598, Mismatches: 129, Indels: 170
0.67 0.14 0.19
Matches are distributed among these distances:
18 22 0.04
19 15 0.03
20 9 0.02
21 12 0.02
22 26 0.04
23 29 0.05
24 70 0.12
25 112 0.19
26 164 0.27
27 67 0.11
28 24 0.04
29 38 0.06
30 10 0.02
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (25 bp):
TTTAAATAAATAATATATAAAACAG
Found at i:57382031 original size:49 final size:50
Alignment explanation
Indices: 57381973--57382083 Score: 120
Period size: 48 Copynumber: 2.2 Consensus size: 50
57381963 AATAAATAAT
* * *
57381973 ATATAAAAAAAACTTATAATAAATAATA-ATAAAACAGTTTCAAA-TATACA
1 ATAT-AAAAAAACTTAAAATAAATAACATATAAAACAGTTT-AAACTAAACA
** *
57382023 ATAT-AAAAATTTTAAAATAAATAACATATAAAACAGTTTAAACTAAATA
1 ATATAAAAAAACTTAAAATAAATAACATATAAAACAGTTTAAACTAAACA
57382072 ATATATAAAAAA
1 ATATA-AAAAAA
57382084 TAATAACATA
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
48 21 0.42
49 20 0.40
50 4 0.08
51 5 0.10
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (50 bp):
ATATAAAAAAACTTAAAATAAATAACATATAAAACAGTTTAAACTAAACA
Found at i:57382104 original size:43 final size:45
Alignment explanation
Indices: 57382036--57382127 Score: 129
Period size: 43 Copynumber: 2.1 Consensus size: 45
57382026 TAAAAATTTT
57382036 AAAATAAATAACATATAAAACAGTTT-AAACTAAATAATATAT-AA
1 AAAATAAATAACATATAAAACAGTTTGAAA-TAAATAATATATGAA
*
57382080 AAAAT-AATAACATATGTAAA-AGTTTGAAATAAATAATATATGAA
1 AAAATAAATAACATAT-AAAACAGTTTGAAATAAATAATATATGAA
57382124 AAAA
1 AAAA
57382128 AGGTTTAAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
43 27 0.61
44 17 0.39
ACGTcount: A:0.63, C:0.04, G:0.05, T:0.27
Consensus pattern (45 bp):
AAAATAAATAACATATAAAACAGTTTGAAATAAATAATATATGAA
Found at i:57382220 original size:198 final size:197
Alignment explanation
Indices: 57381962--57382806 Score: 1319
Period size: 198 Copynumber: 4.3 Consensus size: 197
57381952 GGACAATTTT
* * * *
57381962 AAATAAATAATATATAAAAAAAACTT-ATAATAA-ATAATAATAAAACAGTTTCAAATATACAAT
1 AAATAGATAATATAT-AAAATAATTTAAAAATAATAT-ATAATAAAACAGTTTCAAATATACAAT
** *
57382025 ATAAAAATTTT-AAAATAAATAACATATAAAACAGTTTAAACTAAATAATATATAAAAAATA-AT
64 ATAAATTTTTTAAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATAT--AAAATAGAT
*
57382088 AACATATGTAAAAGTTTGAAATAAATAATATATGAAAAAAAGGTTTAAAATACATAATATATAAA
127 AACATATGTAAAAGTTTGAAATAAATAATATAT-AAAAAAA-GTTTAAAATAAATAATATATAAA
57382153 AAAACTTA
190 AAAACTTA
*
57382161 AAATAGATAATATAT-AAATAATTTAAAAATAATATATAATAAAACAATTTCAAATATACAATAT
1 AAATAGATAATATATAAAATAATTTAAAAATAATATATAATAAAACAGTTTCAAATATACAATAT
* * *
57382225 AATTTTTTTTTAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAAATAAC
66 AA-ATTTTTTAAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAGATAAC
*
57382290 ATATGTAAAAGTTTGACATAAATAATATATGAAAAAAAGGTTTAAAATAAATAATATATAAAAAA
130 ATATGTAAAAGTTTGAAATAAATAATATAT-AAAAAAA-GTTTAAAATAAATAATATATAAAAAA
57382355 ACTTA
193 ACTTA
57382360 AAATAGATAATATATAAAATAATTTAAAAATAATATATAATAAAACAGTTTCAAATATACAATAT
1 AAATAGATAATATATAAAATAATTTAAAAATAATATATAATAAAACAGTTTCAAATATACAATAT
*
57382425 -AATTTTTTAAAAAAAATAAGTAACATATAAAACAGTTTAAACTAGATAATATATAAAATAGATA
66 AAATTTTTT---AAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAGATA
57382489 A-ATTATGTAAAAGTTTGAAATAAATAATATAT-AAAAAAGTTTAAAATAAATAATATATAAAAA
128 ACA-TATGTAAAAGTTTGAAATAAATAATATATAAAAAAAGTTTAAAATAAATAATATATAAAAA
57382552 AACTTA
192 AACTTA
* * * *
57382558 AAATAGATAATATATAAAATAATTTAAAAATCATATATAACAAAACTGTTTCAAATATACAAAAT
1 AAATAGATAATATATAAAATAATTTAAAAATAATATATAATAAAACAGTTTCAAATATACAATAT
*
57382623 AATTTTTTTAAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAGATAACA
66 AAATTTTTTAAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAGATAACA
57382688 TATGTAAAAGTTTGAAATAAATAATATATAAAAAAAGTTTAAAATAAATAATATATAAAAAAACT
131 TATGTAAAAGTTTGAAATAAATAATATATAAAAAAAGTTTAAAATAAATAATATATAAAAAAACT
57382753 TA
196 TA
* *
57382755 AAATAGATCATATATAAAATAATTTAAAAAATAATATATAATAAAATAGTTT
1 AAATAGATAATATATAAAATAATTT-AAAAATAATATATAATAAAACAGTTT
57382807 AAAGTAAAAA
Statistics
Matches: 604, Mismatches: 28, Indels: 29
0.91 0.04 0.04
Matches are distributed among these distances:
196 82 0.14
197 69 0.11
198 162 0.27
199 122 0.20
200 90 0.15
201 79 0.13
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (197 bp):
AAATAGATAATATATAAAATAATTTAAAAATAATATATAATAAAACAGTTTCAAATATACAATAT
AAATTTTTTAAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAGATAACA
TATGTAAAAGTTTGAAATAAATAATATATAAAAAAAGTTTAAAATAAATAATATATAAAAAAACT
TA
Found at i:57382290 original size:42 final size:42
Alignment explanation
Indices: 57382235--57382324 Score: 112
Period size: 42 Copynumber: 2.1 Consensus size: 42
57382225 AATTTTTTTT
*
57382235 TAAAATAAGTAACATAT-AAAACAGTTTAA-ACTAAATAATATA
1 TAAAATAAATAACATATGAAAA-AGTTTAACA-TAAATAATATA
* *
57382277 TAAAATAAATAACATATGTAAAAGTTTGACATAAATAATATA
1 TAAAATAAATAACATATGAAAAAGTTTAACATAAATAATATA
57382319 TGAAAA
1 T-AAAA
57382325 AAAGGTTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
42 34 0.81
43 8 0.19
ACGTcount: A:0.59, C:0.06, G:0.07, T:0.29
Consensus pattern (42 bp):
TAAAATAAATAACATATGAAAAAGTTTAACATAAATAATATA
Found at i:57382687 original size:42 final size:42
Alignment explanation
Indices: 57382633--57382725 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 42
57382623 AATTTTTTTA
57382633 AAAATAAGTAACATAT-AAAACAGTTT-AAACTAAATAATATAT
1 AAAATAAGTAACATATGAAAA-AGTTTGAAA-TAAATAATATAT
*
57382675 AAAAT-AGATAACATATGTAAAAGTTTGAAATAAATAATATAT
1 AAAATAAG-TAACATATGAAAAAGTTTGAAATAAATAATATAT
*
57382717 AAAAAAAGT
1 AAAATAAGT
57382726 TTAAAATAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
41 2 0.04
42 35 0.78
43 8 0.18
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.28
Consensus pattern (42 bp):
AAAATAAGTAACATATGAAAAAGTTTGAAATAAATAATATAT
Found at i:57382702 original size:397 final size:394
Alignment explanation
Indices: 57381962--57382806 Score: 1337
Period size: 397 Copynumber: 2.1 Consensus size: 394
57381952 GGACAATTTT
* * * *
57381962 AAATAAATAATATATAAAAAAAACTT-ATAATAA-ATAATAATAAAACAGTTTCAAATATACAAT
1 AAATAGATAATATAT-AAAATAATTTAAAAATAATAT-ATAATAAAACAGTTTCAAATATACAAT
57382025 ATAAAAATTTTAAAATAAATAACATATAAAACAGTTTAAACTAAATAATATATAAAAAATAATAA
64 ATAAAAATTTTAAAATAAATAACATATAAAACAGTTTAAACTAAATAATATAT-AAAAATAATAA
*
57382090 CATATGTAAAAGTTTGAAATAAATAATATATGAAAAAAAGGTTTAAAATACATAATATATAAAAA
128 CATATGTAAAAGTTTGAAATAAATAATATAT-AAAAAAAGGTTTAAAATAAATAATATATAAAAA
*
57382155 AACTTAAAATAGATAATATATAAATAATTTAAAAATAATATATAATAAAACAATTTCAAATATAC
192 AACTTAAAATAGATAATATATAAATAATTTAAAAATAATATATAACAAAACAATTTCAAATATAC
* *
57382220 AATATAATTTTTTTTTAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAA
257 AAAATAATTTTTTTTAAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAA
*
57382285 ATAACATATGTAAAAGTTTGACATAAATAATATATGAAAAAAAGGTTTAAAATAAATAATATATA
322 ATAACATATGTAAAAGTTTGAAATAAATAATATAT-AAAAAAA-GTTTAAAATAAATAATATATA
57382350 AAAAAACTTA
385 AAAAAACTTA
57382360 AAATAGATAATATATAAAATAATTTAAAAATAATATATAATAAAACAGTTTCAAATATACAATAT
1 AAATAGATAATATATAAAATAATTTAAAAATAATATATAATAAAACAGTTTCAAATATACAATAT
** * *
57382425 -AATTTTTTAAAAAAAATAAGTAACATATAAAACAGTTTAAACTAGATAATATAT-AAAATAGAT
66 AAAAATTTT----AAAATAAATAACATATAAAACAGTTTAAACTAAATAATATATAAAAATA-AT
57382488 AA-ATTATGTAAAAGTTTGAAATAAATAATATAT-AAAAAA-GTTTAAAATAAATAATATATAAA
126 AACA-TATGTAAAAGTTTGAAATAAATAATATATAAAAAAAGGTTTAAAATAAATAATATATAAA
* **
57382550 AAAACTTAAAATAGATAATATATAAAATAATTTAAAAATCATATATAACAAAACTGTTTCAAATA
190 AAAACTTAAAATAGATAATATAT-AAATAATTTAAAAATAATATATAACAAAACAATTTCAAATA
57382615 TACAAAATAA-TTTTTTTAAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAA
254 TACAAAATAATTTTTTTTAAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAA
*
57382679 TAGATAACATATGTAAAAGTTTGAAATAAATAATATATAAAAAAAGTTTAAAATAAATAATATAT
319 TAAATAACATATGTAAAAGTTTGAAATAAATAATATATAAAAAAAGTTTAAAATAAATAATATAT
57382744 AAAAAAACTTA
384 AAAAAAACTTA
* *
57382755 AAATAGATCATATATAAAATAATTTAAAAAATAATATATAATAAAATAGTTT
1 AAATAGATAATATATAAAATAATTT-AAAAATAATATATAATAAAACAGTTT
57382807 AAAGTAAAAA
Statistics
Matches: 418, Mismatches: 19, Indels: 22
0.91 0.04 0.05
Matches are distributed among these distances:
395 55 0.13
396 32 0.08
397 148 0.35
398 101 0.24
399 9 0.02
400 33 0.08
401 40 0.10
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (394 bp):
AAATAGATAATATATAAAATAATTTAAAAATAATATATAATAAAACAGTTTCAAATATACAATAT
AAAAATTTTAAAATAAATAACATATAAAACAGTTTAAACTAAATAATATATAAAAATAATAACAT
ATGTAAAAGTTTGAAATAAATAATATATAAAAAAAGGTTTAAAATAAATAATATATAAAAAAACT
TAAAATAGATAATATATAAATAATTTAAAAATAATATATAACAAAACAATTTCAAATATACAAAA
TAATTTTTTTTAAAAATAAGTAACATATAAAACAGTTTAAACTAAATAATATATAAAATAAATAA
CATATGTAAAAGTTTGAAATAAATAATATATAAAAAAAGTTTAAAATAAATAATATATAAAAAAA
CTTA
Found at i:57382732 original size:27 final size:27
Alignment explanation
Indices: 57382693--57382814 Score: 144
Period size: 27 Copynumber: 4.6 Consensus size: 27
57382683 TAACATATGT
*
57382693 AAAAGTTTGAAATAAATAATATATAAA
1 AAAAGTTTAAAATAAATAATATATAAA
57382720 AAAAGTTTAAAATAAATAATATATAAA
1 AAAAGTTTAAAATAAATAATATATAAA
* * *
57382747 AAAA-CTTAAAATAGATCATATATAAA
1 AAAAGTTTAAAATAAATAATATATAAA
*
57382773 ATAA-TTT-AAA-AAATAATATATAATA
1 AAAAGTTTAAAATAAATAATATATAA-A
*
57382798 AAATAGTTTAAAGTAAA
1 AAA-AGTTTAAAATAAA
57382815 AAGTCAAGGA
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
24 11 0.14
25 6 0.08
26 25 0.31
27 33 0.41
28 2 0.03
29 3 0.04
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (27 bp):
AAAAGTTTAAAATAAATAATATATAAA
Found at i:57389604 original size:25 final size:25
Alignment explanation
Indices: 57389576--57389648 Score: 94
Period size: 25 Copynumber: 2.9 Consensus size: 25
57389566 TTCAACTCTT
* *
57389576 ATGAGCTTCCTGA-TACTCAGCTCGC
1 ATGAGCTTCC-CATTACTCAGCTCAC
*
57389601 ATGAGCTTCCCATTATTCAGCTCAC
1 ATGAGCTTCCCATTACTCAGCTCAC
*
57389626 ATGAGCTTCCCATTATTCAGCTC
1 ATGAGCTTCCCATTACTCAGCTC
57389649 GGTGGAGCTT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
24 1 0.02
25 43 0.98
ACGTcount: A:0.22, C:0.32, G:0.15, T:0.32
Consensus pattern (25 bp):
ATGAGCTTCCCATTACTCAGCTCAC
Found at i:57389658 original size:25 final size:25
Alignment explanation
Indices: 57389592--57389648 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
57389582 TTCCTGATAC
*
57389592 TCAGCTCGCATGAGCTTCCCATTAT
1 TCAGCTCACATGAGCTTCCCATTAT
57389617 TCAGCTCACATGAGCTTCCCATTAT
1 TCAGCTCACATGAGCTTCCCATTAT
57389642 TCAGCTC
1 TCAGCTC
57389649 GGTGGAGCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (25 bp):
TCAGCTCACATGAGCTTCCCATTAT
Found at i:57391858 original size:25 final size:25
Alignment explanation
Indices: 57391778--57391866 Score: 90
Period size: 25 Copynumber: 3.6 Consensus size: 25
57391768 ATTCATATAT
* * *
57391778 GCTCATACGAACTGTA-AACTGGAA
1 GCTCATGCGAGCTGTATAACAGGAA
* * *
57391802 GCTCCTCCGAGCTGAATAACAGGAA
1 GCTCATGCGAGCTGTATAACAGGAA
**
57391827 GCTCATGCGAGCTGTATAATGGGAA
1 GCTCATGCGAGCTGTATAACAGGAA
*
57391852 GCTCATGCAAGCTGT
1 GCTCATGCGAGCTGT
57391867 GGTGTGCCCG
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
24 12 0.23
25 41 0.77
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.21
Consensus pattern (25 bp):
GCTCATGCGAGCTGTATAACAGGAA
Found at i:57403583 original size:30 final size:28
Alignment explanation
Indices: 57403521--57403584 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 28
57403511 TAGTATTTAC
* *
57403521 AATTTTTTTCAATTTAGTCCTGTCTTAC
1 AATTTTTTTCAATTTAGTCCTATCTTAA
57403549 AATTTTTTTCAATTTAGTCCTATCTCTAA
1 AATTTTTTTCAATTTAGTCCTATCT-TAA
*
57403578 AAATTTT
1 AATTTTT
57403585 AAAAATATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 24 0.75
29 8 0.25
ACGTcount: A:0.27, C:0.16, G:0.05, T:0.53
Consensus pattern (28 bp):
AATTTTTTTCAATTTAGTCCTATCTTAA
Found at i:57413170 original size:25 final size:25
Alignment explanation
Indices: 57413112--57413161 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
57413102 TAAGTTGGGA
57413112 AGTTGTTTCTTAAAACGTACTTCAT
1 AGTTGTTTCTTAAAACGTACTTCAT
57413137 AGTTGTTTCTTAAAACGTACTTCAT
1 AGTTGTTTCTTAAAACGTACTTCAT
57413162 TTCTGTTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (25 bp):
AGTTGTTTCTTAAAACGTACTTCAT
Found at i:57416789 original size:35 final size:35
Alignment explanation
Indices: 57416750--57416863 Score: 115
Period size: 35 Copynumber: 3.1 Consensus size: 35
57416740 GATTTATTCG
57416750 ACTAGCGCTGGGCGTAAATATCGTTGGTTTATCCA
1 ACTAGCGCTGGGCGTAAATATCGTTGGTTTATCCA
* *
57416785 ACTAGAGCTGGGC-TCACTAATTATTTCGTT-GTTTATCTA
1 ACTAGCGCTGGGCGT-A--AA-TA--TCGTTGGTTTATCCA
* * *
57416824 ACTAGCGCTAGGCGCAAATATCATTGGTTTATCCA
1 ACTAGCGCTGGGCGTAAATATCGTTGGTTTATCCA
57416859 ACTAG
1 ACTAG
57416864 AGCTAGGCTA
Statistics
Matches: 64, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
34 5 0.08
35 26 0.41
36 2 0.03
37 4 0.06
38 2 0.03
39 20 0.31
40 5 0.08
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (35 bp):
ACTAGCGCTGGGCGTAAATATCGTTGGTTTATCCA
Found at i:57416869 original size:35 final size:35
Alignment explanation
Indices: 57416750--57416946 Score: 114
Period size: 35 Copynumber: 5.4 Consensus size: 35
57416740 GATTTATTCG
* * * *
57416750 ACTAGCGCTGGGCGTAAATATCGTTGGTTTATCCA
1 ACTAGAGCTAGGCGCAAATATCATTGGTTTATCCA
* * * *
57416785 ACTAGAGCTGGGCTCACTAATTATTTCGTT-GTTTATCTA
1 ACTAGAGCTAGGCGCA--AA-TA--TCATTGGTTTATCCA
*
57416824 ACTAGCGCTAGGCGCAAATATCATTGGTTTATCCA
1 ACTAGAGCTAGGCGCAAATATCATTGGTTTATCCA
* * * **
57416859 ACTAGAGCTAGGC-TAACTAATTATTTCGTCCGTTTATCTG
1 ACTAGAGCTAGGCGCAAAT-ATCA-TT-G---GTTTATCCA
*
57416899 ACTAGCA-CT-GGACGCAAATATCATTGGTTTATCGA
1 ACTAG-AGCTAGG-CGCAAATATCATTGGTTTATCCA
57416934 ACTAGAGCTAGGC
1 ACTAGAGCTAGGC
57416947 TCACTAATTA
Statistics
Matches: 125, Mismatches: 20, Indels: 34
0.70 0.11 0.19
Matches are distributed among these distances:
34 8 0.06
35 51 0.41
36 6 0.05
37 5 0.04
38 3 0.02
39 25 0.20
40 23 0.18
41 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (35 bp):
ACTAGAGCTAGGCGCAAATATCATTGGTTTATCCA
Found at i:57417005 original size:74 final size:75
Alignment explanation
Indices: 57416749--57416989 Score: 360
Period size: 74 Copynumber: 3.2 Consensus size: 75
57416739 CGATTTATTC
* * *
57416749 GACTAGCGCTGGGCGTAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACTAATTATTTCGT
1 GACTAGCGCTGGGCGCAAATATCATTGGTTTATCCAACTAGAGCTAGGCTCACTAATTATTTCGT
*
57416814 -TGTTTATCT
66 CCGTTTATCT
* * *
57416823 AACTAGCGCTAGGCGCAAATATCATTGGTTTATCCAACTAGAGCTAGGCTAACTAATTATTTCGT
1 GACTAGCGCTGGGCGCAAATATCATTGGTTTATCCAACTAGAGCTAGGCTCACTAATTATTTCGT
57416888 CCGTTTATCT
66 CCGTTTATCT
* * *
57416898 GACTAGCACTGGACGCAAATATCATTGGTTTATCGAACTAGAGCTAGGCTCACTAATTA-TTCGT
1 GACTAGCGCTGGGCGCAAATATCATTGGTTTATCCAACTAGAGCTAGGCTCACTAATTATTTCGT
* *
57416962 CGGTTTATCC
66 CCGTTTATCT
57416972 GACTAGCGCTGGGCGCAA
1 GACTAGCGCTGGGCGCAA
57416990 CTTCCACCAT
Statistics
Matches: 149, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
74 88 0.59
75 61 0.41
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (75 bp):
GACTAGCGCTGGGCGCAAATATCATTGGTTTATCCAACTAGAGCTAGGCTCACTAATTATTTCGT
CCGTTTATCT
Found at i:57417012 original size:149 final size:142
Alignment explanation
Indices: 57416679--57417059 Score: 365
Period size: 149 Copynumber: 2.6 Consensus size: 142
57416669 TCAATTCGTT
* * *
57416679 CGACTAGCGTTGGGCGCAACTTTCATCAGTTTATCTGACTAGTGCTGGGCAAACATTCGTCGATT
1 CGACTAGCGCTGGGCGCAAC-TTCATCAGTTTATCTGACTAGAGCTAGGCAAACATTCGTCGATT
* * * * *
57416744 TATTCGACTAGCGCTGGGCGTAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACTAATTAT
65 TATTCGACTAGCACTGGACGCAAATATCATTGGTTTATCCAACTAGAGCTAGGCTCACTAATTAT
*
57416809 TTCGTTGTTTATC
130 TTCGTGGTTTATC
** * * ** ** *
57416822 TAACTAGCGCTAGGCGCAAATATCATTGGTTTATCCAACTAGAGCTAGGCTAACTAATTATTTCG
1 CGACTAGCGCTGGGCGCAACT-TCATCAGTTTATCTGACTAGAGCTAGGC--A--AA-CA-TTCG
*
57416887 TCCG-TTTA-TCTGACTAGCACTGGACGCAAATATCATTGGTTTATCGAACTAGAGCTAGGCTCA
59 T-CGATTTATTC-GACTAGCACTGGACGCAAATATCATTGGTTTATCCAACTAGAGCTAGGCTCA
57416950 CTAATTA-TTCGTCGGTTTATC
122 CTAATTATTTCGT-GGTTTATC
* * * * * * *
57416971 CGACTAGCGCTGGGCGCAACTTCCACCATTTTATCTGACTAGTG-TTGGCCACACATTTGTCTAT
1 CGACTAGCGCTGGGCGCAACTT-CATCAGTTTATCTGACTAGAGCTAGG-CAAACATTCGTCGAT
* *
57417035 TTATCCCACTAGCACTGGACGCAAA
64 TTATTCGACTAGCACTGGACGCAAA
57417060 CTCTTTCACG
Statistics
Matches: 187, Mismatches: 37, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
142 2 0.01
143 63 0.34
144 2 0.01
145 2 0.01
147 3 0.02
148 12 0.06
149 101 0.54
150 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.32
Consensus pattern (142 bp):
CGACTAGCGCTGGGCGCAACTTCATCAGTTTATCTGACTAGAGCTAGGCAAACATTCGTCGATTT
ATTCGACTAGCACTGGACGCAAATATCATTGGTTTATCCAACTAGAGCTAGGCTCACTAATTATT
TCGTGGTTTATC
Found at i:57423048 original size:3 final size:3
Alignment explanation
Indices: 57423037--57423154 Score: 104
Period size: 3 Copynumber: 41.0 Consensus size: 3
57423027 CTTGGGTAGT
* *
57423037 AGA ATA AGA AGA A-A A-A AGA AGA ATA AG- AGA AGA A-A CAG- AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA -AGA AGA
* *
57423078 AGA AGA AGA AGA AGA AAA AGA AGA AGA AGA AGA AGA AGA AAA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
* * * * *
57423126 AAA AG- AGG AGG AGG AGA AGA AGA ATA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
57423155 GAAAATGGAA
Statistics
Matches: 96, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
2 11 0.11
3 85 0.89
ACGTcount: A:0.67, C:0.01, G:0.30, T:0.03
Consensus pattern (3 bp):
AGA
Found at i:57423174 original size:29 final size:32
Alignment explanation
Indices: 57423042--57423168 Score: 123
Period size: 33 Copynumber: 3.9 Consensus size: 32
57423032 GTAGTAGAAT
* * *
57423042 AAGAAGAAAAAAGAAGAATAAGAGAAGAAACAGAG
1 AAGAAG-AAAAAGAAGAAAAAGAGAAG-GA-GGAG
* * *
57423077 AAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAG
1 AAGAAGAAAAAGAAGAAAAAG-AGAAGGAGGAG
*
57423110 AAGAAGAAAAAGAAGAAAAAGAGGAGGAGGAG
1 AAGAAGAAAAAGAAGAAAAAGAGAAGGAGGAG
* *
57423142 AAGAAGAATAAG-AGAAAATG-GAAGGAG
1 AAGAAGAAAAAGAAGAAAAAGAGAAGGAG
57423169 ATAAGACTAG
Statistics
Matches: 80, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
30 6 0.08
31 7 0.09
32 19 0.24
33 22 0.28
34 15 0.19
35 11 0.14
ACGTcount: A:0.65, C:0.01, G:0.31, T:0.02
Consensus pattern (32 bp):
AAGAAGAAAAAGAAGAAAAAGAGAAGGAGGAG
Found at i:57424329 original size:14 final size:15
Alignment explanation
Indices: 57424303--57424331 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
57424293 GCTTCATCAT
57424303 CTTCTTCTTCCTCTG
1 CTTCTTCTTCCTCTG
57424318 CTTCTT-TTCCTCTG
1 CTTCTTCTTCCTCTG
57424332 GTTTTTGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.00, C:0.38, G:0.07, T:0.55
Consensus pattern (15 bp):
CTTCTTCTTCCTCTG
Found at i:57424746 original size:21 final size:21
Alignment explanation
Indices: 57424722--57424762 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
57424712 CAACATGGCA
57424722 AGTTAACTGGCCACATCAGCT
1 AGTTAACTGGCCACATCAGCT
* *
57424743 AGTTAACTTGCCACGTCAGC
1 AGTTAACTGGCCACATCAGC
57424763 GTTCCTGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (21 bp):
AGTTAACTGGCCACATCAGCT
Found at i:57431110 original size:15 final size:15
Alignment explanation
Indices: 57431090--57431130 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
57431080 GAATTCTAAT
*
57431090 ATAAATAATCATAAC
1 ATAAATAATAATAAC
57431105 ATAAATAATAAT-A-
1 ATAAATAATAATAAC
57431118 AT-AATAATAATAA
1 ATAAATAATAATAA
57431131 TAGGGTGACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
12 9 0.38
13 3 0.12
14 1 0.04
15 11 0.46
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (15 bp):
ATAAATAATAATAAC
Found at i:57431116 original size:3 final size:3
Alignment explanation
Indices: 57431108--57431132 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
57431098 TCATAACATA
57431108 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
57431133 GGGTGACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:57434575 original size:17 final size:17
Alignment explanation
Indices: 57434549--57434584 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
57434539 AGCCCAAGCT
57434549 AACAAAAATAAA-AAAA
1 AACAAAAATAAATAAAA
57434565 AACATAAAATAAATAAAA
1 AACA-AAAATAAATAAAA
57434583 AA
1 AA
57434585 ATGTCCAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 8 0.44
18 6 0.33
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.11
Consensus pattern (17 bp):
AACAAAAATAAATAAAA
Found at i:57436173 original size:14 final size:14
Alignment explanation
Indices: 57436154--57436182 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
57436144 TTTCCTTTCA
57436154 AATCTATTATGCAT
1 AATCTATTATGCAT
57436168 AATCTATTATGCAT
1 AATCTATTATGCAT
57436182 A
1 A
57436183 TAGTTTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (14 bp):
AATCTATTATGCAT
Found at i:57437133 original size:127 final size:125
Alignment explanation
Indices: 57436946--57437263 Score: 372
Period size: 127 Copynumber: 2.5 Consensus size: 125
57436936 GAAAATTCCT
* * *
57436946 TAAAACGAAGGCAATATTTGATGTTTGGAAATTCG-GGAAATCATGCCCTACCGTGCTGGGTTTC
1 TAAAAC-AAGGCAATA-TTCAAGTTTGGAAATTCGAGG-AATCGTGCCCTA-CGTGCTGGGTTTC
* *
57437010 GATTTCCCGTTTGA-TCAAAATAATTGAATATTCCTTTAGAATTTCACTCATGTTTTCCAAATTC
62 GATTTCCCGTTT-ATTCAAAATAATTGAATACTCCTTTAGAATTTCACTCATGTTTTACAAATTC
* *
57437074 TAAAACAAGGTAATGTTCAAGGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCGA
1 TAAAACAAGGCAATATTCAA-GTTTGGAAATTCGAGGAATCGTGCCCTA-CGTGCTGGGTTTCGA
* * * * * * *
57437139 TTTTCGGTTTATTCCAAATAATTGAATGCTCCTTTAGTATTTCACTCGTGTTTTATAAATTC
64 TTTCCCGTTTATTCAAAATAATTGAATACTCCTTTAGAATTTCACTCATGTTTTACAAATTC
* * * *
57437201 TAAAGCAAGGCAATATTCAA-TAATGGAAGTTCGAGGAATCGTGCCCTACTGTGCCGGGTTTCG
1 TAAAACAAGGCAATATTCAAGT-TTGGAAATTCGAGGAATCGTGCCCTAC-GTGCTGGGTTTCG
57437264 GTTTTTCGTT
Statistics
Matches: 164, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
125 2 0.01
126 40 0.24
127 114 0.70
128 8 0.05
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (125 bp):
TAAAACAAGGCAATATTCAAGTTTGGAAATTCGAGGAATCGTGCCCTACGTGCTGGGTTTCGATT
TCCCGTTTATTCAAAATAATTGAATACTCCTTTAGAATTTCACTCATGTTTTACAAATTC
Found at i:57439408 original size:30 final size:30
Alignment explanation
Indices: 57439374--57439430 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
57439364 TCCTTAAGTC
57439374 AAACTTTGGCAAAATTACAATTTTGCCTAT
1 AAACTTTGGCAAAATTACAATTTTGCCTAT
* * * *
57439404 AAACTTTTGCATATTTACACTTTTGCC
1 AAACTTTGGCAAAATTACAATTTTGCC
57439431 CCTAGGCTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCTAT
Found at i:57441843 original size:19 final size:19
Alignment explanation
Indices: 57441819--57441865 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
57441809 ATTTCTTTCC
57441819 TTTGCATT-CATCCCATGCA
1 TTTGCATTACATCCCAT-CA
**
57441838 TTTGCATTACATTGCATCA
1 TTTGCATTACATCCCATCA
57441857 TTTGCATTA
1 TTTGCATTA
57441866 GATTTTCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATCCCATCA
Found at i:57446215 original size:87 final size:87
Alignment explanation
Indices: 57445935--57446503 Score: 662
Period size: 87 Copynumber: 6.5 Consensus size: 87
57445925 TGTAGTGACT
* * **
57445935 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAGTCGAAGAAGTAAGTTTTA
1 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTA
*
57446000 ACCCTCTAAGTAGTAGGGTAAC
66 ACCCCCTAAGTAGTAGGGTAAC
* * *
57446022 AGGATAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCGAAGAAAGTAAGCCTT
1 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGAAG-AAGCAAGCCTT
*
57446087 AACCCCCTAAGTAGTACGGTAAC
65 AACCCCCTAAGTAGTAGGGTAAC
*
57446110 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGGAGAAGCAAGCCTTA
1 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTA
* *
57446175 ACCCCCTAAATAGTAGGGTAAT
66 ACCCCCTAAGTAGTAGGGTAAC
* * * * * * * *
57446197 AGGCTGAAGATTGCAGATCTTGTCTCCC-AGA-AGTTACAGTGGAACAGATCAAAGACGGCGAGC
1 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAG-T--AGTGGAGCAAATCGAAGA-AGCAAGC
57446260 CTTAACCCCCTAAGTAGTAGGGTAAC
62 CTTAACCCCCTAAGTAGTAGGGTAAC
57446286 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTA
1 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTA
* *
57446351 ACCCCTTAGGTAGTAGGGTAAC
66 ACCCCCTAAGTAGTAGGGTAAC
* * ** * * * **
57446373 AGGCTGAAGATTGCAGATCTTGTCTCCC-AGAAGTTGTAGTGGAACAAATCAAAGACGGTGAGCC
1 AGGCTAAAGATTGTAGATCTTGTCTCCCTA-AA-CAGTAGTGGAGCAAATCGAAGA-AGCAAGCC
* * * *
57446437 TTGACCCCCTAAGCAATAGGGTAAT
63 TTAACCCCCTAAGTAGTAGGGTAAC
* ** * * *
57446462 AGGCT-GA-ATTACAGTTCTTATCTCCCTAAACAGTAGTTGAGC
1 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGC
57446504 GGATCAAAGA
Statistics
Matches: 413, Mismatches: 58, Indels: 23
0.84 0.12 0.05
Matches are distributed among these distances:
85 2 0.00
86 12 0.03
87 181 0.44
88 129 0.31
89 84 0.20
90 3 0.01
91 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (87 bp):
AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTA
ACCCCCTAAGTAGTAGGGTAAC
Found at i:57446330 original size:176 final size:174
Alignment explanation
Indices: 57445935--57446503 Score: 775
Period size: 176 Copynumber: 3.3 Consensus size: 174
57445925 TGTAGTGACT
* * **
57445935 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAGTCGAAGAAGTAAGTTTTA
1 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTA
* * * * *
57446000 ACCCTCTAAGTAGTAGGGTAACAGGATAAAGATTGTAGATCTTGTCTCCCTAAACAG-TAGTGGA
66 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCC-AGA-AGTTAGTGGA
* * ** * *
57446064 GCAGATCGAAGAAAGTAAGCCTTAACCCCCTAAGTAGTACGGTAAC
129 ACAGATCAAAGACGGTGAGCCTTAACCCCCTAAGTAGTAGGGTAAC
*
57446110 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGGAGAAGCAAGCCTTA
1 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTA
* *
57446175 ACCCCCTAAATAGTAGGGTAATAGGCTGAAGATTGCAGATCTTGTCTCCCAGAAGTTACAGTGGA
66 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCAGAAGTT--AGTGGA
*
57446240 ACAGATCAAAGACGGCGAGCCTTAACCCCCTAAGTAGTAGGGTAAC
129 ACAGATCAAAGACGGTGAGCCTTAACCCCCTAAGTAGTAGGGTAAC
57446286 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTA
1 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTA
* *
57446351 ACCCCTTAGGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCAGAAGTTGTAGTGGA
66 ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCAGAAG-T-TAGTGGA
* * * * *
57446416 ACAAATCAAAGACGGTGAGCCTTGACCCCCTAAGCAATAGGGTAAT
129 ACAGATCAAAGACGGTGAGCCTTAACCCCCTAAGTAGTAGGGTAAC
* ** * * *
57446462 AGGCT-GA-ATTACAGTTCTTATCTCCCTAAACAGTAGTTGAGC
1 AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGC
57446504 GGATCAAAGA
Statistics
Matches: 353, Mismatches: 36, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
173 2 0.01
174 33 0.09
175 105 0.30
176 211 0.60
177 1 0.00
178 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (174 bp):
AGGCTAAAGATTGTAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTA
ACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGCAGATCTTGTCTCCCAGAAGTTAGTGGAAC
AGATCAAAGACGGTGAGCCTTAACCCCCTAAGTAGTAGGGTAAC
Found at i:57447535 original size:15 final size:16
Alignment explanation
Indices: 57447515--57447554 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
57447505 CTGCAAATCA
*
57447515 AAACAAAGACGA-CAG
1 AAACAAAGACAAGCAG
*
57447530 AAACAAGGACAAGCAG
1 AAACAAAGACAAGCAG
57447546 AAACAAAGA
1 AAACAAAGA
57447555 AAAACAGTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.62, C:0.17, G:0.20, T:0.00
Consensus pattern (16 bp):
AAACAAAGACAAGCAG
Found at i:57448873 original size:14 final size:14
Alignment explanation
Indices: 57448854--57448882 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
57448844 TTTCCTTTCA
57448854 AATCTATTATGCAT
1 AATCTATTATGCAT
57448868 AATCTATTATGCAT
1 AATCTATTATGCAT
57448882 A
1 A
57448883 TAGTTTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (14 bp):
AATCTATTATGCAT
Found at i:57449829 original size:127 final size:127
Alignment explanation
Indices: 57449669--57449965 Score: 414
Period size: 127 Copynumber: 2.3 Consensus size: 127
57449659 AATGTTTGAT
* *
57449669 GTTTGGAAATTCGGGAAATCATGCCCTACCGTGCTGGGTTTCGATTTCCCGTTTGTTCAAAATAA
1 GTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCCCGTTTGTTCAAAATAA
* *
57449734 TTGAATATTCCTCTAGAATTTCACTCGTGTTTTCCAAATTCTAAAACAAGACAATTTTCAAG
66 TTGAATATTCCTCTAGAATTTCACTCGTGTTTTACAAATTCTAAAACAAGACAATGTTCAAG
* * *
57449796 GTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTCCGGTTTGTTCCAAATAA
1 GTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCCCGTTTGTTCAAAATAA
* * * * * * *
57449861 TTGAATGTTCCTTTAGTATTTCACTCGTGTTTTATAAATTCTAAAGCAAGGCAATGTTCAAT
66 TTGAATATTCCTCTAGAATTTCACTCGTGTTTTACAAATTCTAAAACAAGACAATGTTCAAG
* * * * * *
57449923 GTTTGTAAGTTCGAGGAATCGTGCCCTACTGTACCGGGTTTCG
1 GTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTGGGTTTCG
57449966 GTTTTTCATT
Statistics
Matches: 149, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
127 149 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36
Consensus pattern (127 bp):
GTTTGGAAATTCGGGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCCCGTTTGTTCAAAATAA
TTGAATATTCCTCTAGAATTTCACTCGTGTTTTACAAATTCTAAAACAAGACAATGTTCAAG
Found at i:57458091 original size:14 final size:14
Alignment explanation
Indices: 57458034--57458097 Score: 55
Period size: 14 Copynumber: 4.9 Consensus size: 14
57458024 ACTCTAAACA
*
57458034 TTAAATCTTAAATC
1 TTAAATCCTAAATC
*
57458048 TTGAAT-C-AAA-C
1 TTAAATCCTAAATC
* * *
57458059 CTAAACCCCAAAT-
1 TTAAATCCTAAATC
57458072 TTAAATCCTAAATC
1 TTAAATCCTAAATC
57458086 TTAAATCCTAAA
1 TTAAATCCTAAA
57458098 CTTTAAATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
11 4 0.11
12 4 0.11
13 13 0.34
14 17 0.45
ACGTcount: A:0.45, C:0.22, G:0.02, T:0.31
Consensus pattern (14 bp):
TTAAATCCTAAATC
Found at i:57458103 original size:14 final size:13
Alignment explanation
Indices: 57458068--57458105 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
57458058 CCTAAACCCC
57458068 AAATTTAAATCCT
1 AAATTTAAATCCT
57458081 AAATCTTAAATCCT
1 AAAT-TTAAATCCT
57458095 AAACTTTAAAT
1 AAA-TTTAAAT
57458106 TTGGGGTTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.17
14 18 0.78
15 1 0.04
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (13 bp):
AAATTTAAATCCT
Found at i:57458147 original size:20 final size:20
Alignment explanation
Indices: 57458105--57458144 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
57458095 AAACTTTAAA
* *
57458105 TTTGGGGTTCGAGTTTAAGG
1 TTTGGGATTCGAGTTCAAGG
57458125 TTTGGGATTCGAGGTTCAAG
1 TTTGGGATTCGA-GTTCAAG
57458145 TTTTAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.17, C:0.07, G:0.38, T:0.38
Consensus pattern (20 bp):
TTTGGGATTCGAGTTCAAGG
Found at i:57470505 original size:26 final size:26
Alignment explanation
Indices: 57470475--57470525 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
57470465 ACCAATGAAC
*
57470475 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
57470501 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
57470526 CTTTTCACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:57470659 original size:105 final size:105
Alignment explanation
Indices: 57470338--57470708 Score: 624
Period size: 104 Copynumber: 3.6 Consensus size: 105
57470328 TAACCGTTAT
* * ** *
57470338 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
57470403 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
57470442 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTC-GGG
1 TGGTGGATCA-CGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGG
57470505 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
57470546 TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
57470611 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
57470651 TGGTGGATCACGCACATAGCACCACC-ATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCT
57470709 TTATATACAA
Statistics
Matches: 255, Mismatches: 8, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
103 25 0.10
104 159 0.62
105 71 0.28
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (105 bp):
TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:57477732 original size:104 final size:104
Alignment explanation
Indices: 57477455--57477816 Score: 591
Period size: 104 Copynumber: 3.6 Consensus size: 104
57477445 TAACCGTTAT
* *
57477455 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
57477520 AATCAGCACATAGCAACCCCCTTT--CATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
57477557 TGGTGGATATCGCACTTAGCACCACC----AAT--GGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
57477616 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
57477655 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
57477720 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* **
57477759 TGGTGGATCA-CGCACATAGCACCACC-ATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
57477817 TTTATATACA
Statistics
Matches: 245, Mismatches: 6, Indels: 17
0.91 0.02 0.06
Matches are distributed among these distances:
96 54 0.22
98 42 0.17
102 27 0.11
103 29 0.12
104 92 0.38
105 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.19
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:57478595 original size:26 final size:26
Alignment explanation
Indices: 57478566--57478673 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
57478556 TGAAATTCCA
57478566 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
57478592 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
57478618 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
57478644 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
57478670 ATCA
1 ATCA
57478674 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:57484731 original size:31 final size:31
Alignment explanation
Indices: 57484614--57484723 Score: 186
Period size: 31 Copynumber: 3.5 Consensus size: 31
57484604 ACAAATGACA
*
57484614 AGTGAAAAGTGGTAGCTCCGTCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
57484645 AATGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
57484676 AGTGAAAAGTGGTAG-TACCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCT-CCGGCTACCTGATC
57484707 AGTGAAAAGTGGTAGCT
1 AGTGAAAAGTGGTAGCT
57484724 TCAGCTACAA
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
30 1 0.01
31 72 0.97
32 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:57484823 original size:47 final size:47
Alignment explanation
Indices: 57484754--57484962 Score: 207
Period size: 47 Copynumber: 4.5 Consensus size: 47
57484744 ATTTCCGTAC
* * * *
57484754 AAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTGTAT
1 AAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATACTGTGT
* * * *
57484801 AAGACCATATCTGGGATATGGCATCAGTGAGATATGTGAT-TTGTGT
1 AAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATACTGTGT
* * *
57484847 ACGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTAC-GTGT
1 AAGACCATAGCTGGGATATGGCATCG--GTGTGATATGTGA-TACTGTGT
* * *
57484896 AAGACCATAGCTGGGCTATGGCATC-G-AT-ATATG-AATA-TGTGT
1 AAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATACTGTGT
*
57484938 AAGACCATAGCTGGGCTATGGCATC
1 AAGACCATAGCTGGGATATGGCATC
57484963 ATTATGTGAA
Statistics
Matches: 140, Mismatches: 17, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
42 31 0.22
43 1 0.01
44 5 0.04
45 1 0.01
46 26 0.19
47 36 0.26
48 11 0.08
49 29 0.21
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (47 bp):
AAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATACTGTGT
Found at i:57484906 original size:49 final size:48
Alignment explanation
Indices: 57484754--57485006 Score: 207
Period size: 42 Copynumber: 5.6 Consensus size: 48
57484744 ATTTCCGTAC
* * * * * * *
57484754 AAGACCATATCTGGGATATGGCATCG--GTGTGATATATGCTACTGTAT
1 AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTC-GTGT
* * * * *
57484801 AAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATTTGTGT
1 AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTGT
*
57484847 ACGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTGT
1 AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT-CGTGT
*
57484896 AAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T-GTGT
1 AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTGT
57484938 AAGACCATAGCTGGGCTATGGCATC-ATTATGTGA-A---GA-T-GTGT
1 AAGACCATAGCTGGGCTATGGCATCGA-TATGTGATATGTGATTCGTGT
* **
57484980 AAGACCATAGTTGAACTATGGCATCGA
1 AAGACCATAGCTGGGCTATGGCATCGA
57485007 GAAAACGAAG
Statistics
Matches: 181, Mismatches: 18, Indels: 18
0.83 0.08 0.08
Matches are distributed among these distances:
41 1 0.01
42 64 0.35
43 1 0.01
44 1 0.01
45 1 0.01
46 26 0.14
47 37 0.20
48 14 0.08
49 36 0.20
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (48 bp):
AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTGT
Found at i:57484969 original size:91 final size:93
Alignment explanation
Indices: 57484754--57484971 Score: 250
Period size: 91 Copynumber: 2.4 Consensus size: 93
57484744 ATTTCCGTAC
* * * * * * *
57484754 AAGACCATATCTGGGATATGGCATCG--GTGTGATATATG-CTACTGTATAAGACCATATCTGGG
1 AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTAC-GTGTAAGACCATAGCTGGG
* *
57484816 ATATGGCATCAGTGAGATATGTGATTTGTGT
65 ATATGGCATCA--GAGATATGTAATATGTGT
* *
57484847 ACGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTGTAAGACCATAGCTGGGC
1 AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTGTAAGACCATAGCTGGGA
*
57484912 TATGGCATC-GATATATG-AATATGTGT
66 TATGGCATCAGAGATATGTAATATGTGT
57484938 AAGACCATAGCTGGGCTATGGCATC-ATTATGTGA
1 AAGACCATAGCTGGGCTATGGCATCGA-TATGTGA
57484972 AGATGTGTAA
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
90 1 0.01
91 38 0.35
92 7 0.06
93 23 0.21
95 36 0.33
96 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (93 bp):
AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTGTAAGACCATAGCTGGGA
TATGGCATCAGAGATATGTAATATGTGT
Found at i:57488643 original size:5 final size:5
Alignment explanation
Indices: 57488635--57488664 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
57488625 TAAATTAATA
*
57488635 AAAAT AAAAT AAAAT AAAAC AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
57488665 CTTTCTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:57489042 original size:44 final size:45
Alignment explanation
Indices: 57488979--57489068 Score: 146
Period size: 44 Copynumber: 2.0 Consensus size: 45
57488969 GCCAAACATG
* * *
57488979 TGTCATATATATCATGAACTCAGGCTACAACTC-ATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCGATGAGTTCAGA
57489023 TGTCACATATATCATGAACTCAGACCACAACTCGATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCGATGAGTTCAGA
57489068 T
1 T
57489069 CACATAATTC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 30 0.71
45 12 0.29
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (45 bp):
TGTCACATATATCATGAACTCAGACCACAACTCGATGAGTTCAGA
Found at i:57497121 original size:28 final size:28
Alignment explanation
Indices: 57497067--57497121 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
57497057 ACTGGGGTTT
*
57497067 TCACACGGCTTGACACATGCCCGTGTCCC
1 TCACACGGCATGACACA-GCCCGTGTCCC
57497096 TCACACGGCCATGACAC-GCCCGTGTC
1 TCACACGG-CATGACACAGCCCGTGTC
57497122 TTAGCCCGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 9 0.38
29 8 0.33
30 7 0.29
ACGTcount: A:0.18, C:0.42, G:0.22, T:0.18
Consensus pattern (28 bp):
TCACACGGCATGACACAGCCCGTGTCCC
Found at i:57497669 original size:58 final size:58
Alignment explanation
Indices: 57497577--57497695 Score: 220
Period size: 58 Copynumber: 2.1 Consensus size: 58
57497567 TTTCATAGAA
*
57497577 TAACTTTCAATATTAGCCATTTACCATGGCCTTATACAAAATGAATCAAATGTTAAAG
1 TAACTTTCAATATTAGCCATTTACCATGGCCTTATACAAAATGAATCAAATGCTAAAG
*
57497635 TAACTTTCAATATTAGCCATTTACCATGGTCTTATACAAAATGAATCAAATGCTAAAG
1 TAACTTTCAATATTAGCCATTTACCATGGCCTTATACAAAATGAATCAAATGCTAAAG
57497693 TAA
1 TAA
57497696 GCTAACACAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (58 bp):
TAACTTTCAATATTAGCCATTTACCATGGCCTTATACAAAATGAATCAAATGCTAAAG
Found at i:57498371 original size:46 final size:44
Alignment explanation
Indices: 57498273--57498387 Score: 142
Period size: 46 Copynumber: 2.5 Consensus size: 44
57498263 AGGCCGACAC
*
57498273 CATGTCCCAGACATGGTCTTACACTGACATATCTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACATATCACGTAGCCGATG
* * *
57498318 CATGTCCCAGACATGTCTTACATTGGCTTACGTCACG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGACATA--TCACGTA-GCCGATG
*
57498364 CATGTCCCAAACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
57498388 AGCTCTCGTC
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
44 13 0.21
45 15 0.25
46 33 0.54
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACATATCACGTAGCCGATG
Found at i:57498410 original size:46 final size:46
Alignment explanation
Indices: 57498311--57498484 Score: 149
Period size: 46 Copynumber: 3.7 Consensus size: 46
57498301 ATATCTCGTA
* * *
57498311 GCCGATGCATGTCCCAGACATGTCTTACATTGGCTTACGTCACGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCACAAG
* * *
57498357 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCT-CGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACGTCACAAG
* * * * * *
57498403 GCTGATGCCATGTCCTAGGCATGGTCTTACACTGGC--AC-TCATAGTGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACGTCACA---AG
*
57498451 GCCGATGTATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
57498485 ACACAAATAA
Statistics
Matches: 101, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
45 3 0.03
46 57 0.56
47 23 0.23
48 18 0.18
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCACAAG
Found at i:57502678 original size:33 final size:33
Alignment explanation
Indices: 57502581--57502670 Score: 135
Period size: 33 Copynumber: 2.7 Consensus size: 33
57502571 TACTTTTTAT
*
57502581 TTGGTGTGATGGTTAGATTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
* *
57502614 TTGGTGTAATGGTTGGTTTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
* *
57502647 TTGGTGTGATGGATGGATTGGCTC
1 TTGGTGTGATGGTTGGATTAGCTC
57502671 AAGTGAGCGT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.18, C:0.09, G:0.33, T:0.40
Consensus pattern (33 bp):
TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
Found at i:57503399 original size:45 final size:45
Alignment explanation
Indices: 57503339--57503486 Score: 190
Period size: 45 Copynumber: 3.1 Consensus size: 45
57503329 GCGGCATAAG
57503339 TAAG-AAAAAAAATCAAATAAAGCCATTAATGGAAAAATAGTAAA
1 TAAGAAAAAAAAATCAAATAAAGCCATTAATGGAAAAATAGTAAA
57503383 TAAGAAAAAAAAATCAAATAAAGCCATTAATGGAAAAATAGTAAATAAATTGAAA
1 TAAGAAAAAAAAATCAAATAAAGCCATTAATGGAAAAATAG---------T-AAA
57503438 TAAGAAAAAAATAATCAAATAAAGCCATTAATGGAAAAATAGTAAA
1 TAAGAAAAAAA-AATCAAATAAAGCCATTAATGGAAAAATAGTAAA
57503484 TAA
1 TAA
57503487 ATTGAAATTA
Statistics
Matches: 92, Mismatches: 0, Indels: 22
0.81 0.00 0.19
Matches are distributed among these distances:
44 4 0.04
45 36 0.39
46 6 0.07
47 1 0.01
54 1 0.01
55 14 0.15
56 30 0.33
ACGTcount: A:0.64, C:0.06, G:0.11, T:0.20
Consensus pattern (45 bp):
TAAGAAAAAAAAATCAAATAAAGCCATTAATGGAAAAATAGTAAA
Found at i:57503447 original size:28 final size:28
Alignment explanation
Indices: 57503410--57503494 Score: 77
Period size: 28 Copynumber: 3.0 Consensus size: 28
57503400 ATAAAGCCAT
*
57503410 TAATGGAAAAATAGTAAATAAATTGAAA
1 TAATGAAAAAATAGTAAATAAATTGAAA
* * *
57503438 TAA-GAAAAAAATAATCAAATAAA--GCCAT
1 TAATG-AAAAAATAGT-AAATAAATTG-AAA
*
57503466 TAATGGAAAAATAGTAAATAAATTGAAA
1 TAATGAAAAAATAGTAAATAAATTGAAA
57503494 T
1 T
57503495 TAAAAATAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 12
0.68 0.13 0.19
Matches are distributed among these distances:
27 9 0.21
28 25 0.58
29 9 0.21
ACGTcount: A:0.61, C:0.04, G:0.12, T:0.24
Consensus pattern (28 bp):
TAATGAAAAAATAGTAAATAAATTGAAA
Found at i:57503457 original size:56 final size:55
Alignment explanation
Indices: 57503380--57503494 Score: 221
Period size: 56 Copynumber: 2.1 Consensus size: 55
57503370 GAAAAATAGT
57503380 AAATAAGAAAAAAAAATCAAATAAAGCCATTAATGGAAAAATAGTAAATAAATTG
1 AAATAAGAAAAAAAAATCAAATAAAGCCATTAATGGAAAAATAGTAAATAAATTG
57503435 AAATAAGAAAAAAATAATCAAATAAAGCCATTAATGGAAAAATAGTAAATAAATTG
1 AAATAAGAAAAAAA-AATCAAATAAAGCCATTAATGGAAAAATAGTAAATAAATTG
57503491 AAAT
1 AAAT
57503495 TAAAAATAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
55 14 0.24
56 45 0.76
ACGTcount: A:0.63, C:0.05, G:0.10, T:0.21
Consensus pattern (55 bp):
AAATAAGAAAAAAAAATCAAATAAAGCCATTAATGGAAAAATAGTAAATAAATTG
Found at i:57503509 original size:21 final size:21
Alignment explanation
Indices: 57503480--57503520 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
57503470 GGAAAAATAG
*
57503480 TAAATAAATT-GAAATTAAAAA
1 TAAACAAATTGGAAA-TAAAAA
57503501 TAAACAAATTGGAAATAAAA
1 TAAACAAATTGGAAATAAAA
57503521 GATTTTCTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.24
Consensus pattern (21 bp):
TAAACAAATTGGAAATAAAAA
Found at i:57503509 original size:52 final size:53
Alignment explanation
Indices: 57503380--57503509 Score: 181
Period size: 56 Copynumber: 2.4 Consensus size: 53
57503370 GAAAAATAGT
*
57503380 AAATAAGAAAAAAAAATCAAATAAAGCCATTAATGGAAAAATAGTAAATAAATTG
1 AAATAA-AAAAATAAA-CAAATAAAGCCATTAATGGAAAAATAGTAAATAAATTG
*
57503435 AAATAAGAAAAAAATAATCAAATAAAGCCATTAATGGAAAAATAGTAAATAAATTG
1 AAAT---AAAAAAATAAACAAATAAAGCCATTAATGGAAAAATAGTAAATAAATTG
*
57503491 AAAT-TAAAAATAAACAAAT
1 AAATAAAAAAATAAACAAAT
57503510 TGGAAATAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
52 13 0.19
55 4 0.06
56 42 0.62
57 7 0.10
58 2 0.03
ACGTcount: A:0.65, C:0.05, G:0.09, T:0.21
Consensus pattern (53 bp):
AAATAAAAAAATAAACAAATAAAGCCATTAATGGAAAAATAGTAAATAAATTG
Found at i:57504468 original size:25 final size:24
Alignment explanation
Indices: 57504440--57504493 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
57504430 CATCCCGTTA
57504440 TATGGATCTCACGAGCTTCCTAATT
1 TATGGATCTCACGAGCTTCCT-ATT
* **
57504465 TATGGCTCTCTTGAGCTTCCTATT
1 TATGGATCTCACGAGCTTCCTATT
57504489 TATGG
1 TATGG
57504494 CCCGTATGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.41
Consensus pattern (24 bp):
TATGGATCTCACGAGCTTCCTATT
Found at i:57504652 original size:25 final size:25
Alignment explanation
Indices: 57504624--57504671 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
57504614 TGTGGCTCTT
57504624 ATGAGCTTCCCGTTACATGGCTCAC
1 ATGAGCTTCCCGTTACATGGCTCAC
* *
57504649 ATGAGCTTCCTGTTATATGGCTC
1 ATGAGCTTCCCGTTACATGGCTC
57504672 GAAAGAGCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCCCGTTACATGGCTCAC
Found at i:57504704 original size:25 final size:25
Alignment explanation
Indices: 57504624--57504704 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
57504614 TGTGGCTCTT
* * *
57504624 ATGAGCTTCCCGTTACATGGCTCAC
1 ATGAGCTACCTGTTATATGGCTCAC
*
57504649 ATGAGCTTCCTGTTATATGGCTCGA-
1 ATGAGCTACCTGTTATATGGCTC-AC
* *
57504674 AAGAGCTACCTATTTATAT-GCTCAC
1 ATGAGCTACCT-GTTATATGGCTCAC
57504699 ATGAGC
1 ATGAGC
57504705 ATTCCTGAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
24 1 0.02
25 39 0.83
26 7 0.15
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (25 bp):
ATGAGCTACCTGTTATATGGCTCAC
Found at i:57512341 original size:14 final size:14
Alignment explanation
Indices: 57512324--57512403 Score: 74
Period size: 14 Copynumber: 5.8 Consensus size: 14
57512314 AATGTTCCAA
*
57512324 GTTCAGGGTTTGGG
1 GTTCAGGGTTCGGG
** *
57512338 GTTCAAAGTTC-GA
1 GTTCAGGGTTCGGG
*
57512351 GTTCAAGGTTCGGG
1 GTTCAGGGTTCGGG
* *
57512365 GTTCGGGGTTCAGG
1 GTTCAGGGTTCGGG
57512379 GTTC-GGGATTCGGG
1 GTTCAGGG-TTCGGG
57512393 GTTCAGGGTTC
1 GTTCAGGGTTC
57512404 TGCTTACAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
13 14 0.26
14 36 0.68
15 3 0.06
ACGTcount: A:0.12, C:0.14, G:0.42, T:0.31
Consensus pattern (14 bp):
GTTCAGGGTTCGGG
Found at i:57512367 original size:7 final size:7
Alignment explanation
Indices: 57512357--57512403 Score: 67
Period size: 7 Copynumber: 6.7 Consensus size: 7
57512347 TCGAGTTCAA
57512357 GGTTCGG
1 GGTTCGG
57512364 GGTTCGG
1 GGTTCGG
*
57512371 GGTTCAG
1 GGTTCGG
57512378 GGTTCGG
1 GGTTCGG
*
57512385 GATTCGG
1 GGTTCGG
*
57512392 GGTTCAG
1 GGTTCGG
57512399 GGTTC
1 GGTTC
57512404 TGCTTACAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.06, C:0.15, G:0.49, T:0.30
Consensus pattern (7 bp):
GGTTCGG
Found at i:57512381 original size:21 final size:21
Alignment explanation
Indices: 57512351--57512403 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
57512341 CAAAGTTCGA
* *
57512351 GTTCAAGGTTCGGGGTTCGGG
1 GTTCAGGGTTCGGGATTCGGG
57512372 GTTCAGGGTTCGGGATTCGGG
1 GTTCAGGGTTCGGGATTCGGG
57512393 GTTCAGGGTTC
1 GTTCAGGGTTC
57512404 TGCTTACAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.09, C:0.15, G:0.45, T:0.30
Consensus pattern (21 bp):
GTTCAGGGTTCGGGATTCGGG
Found at i:57516355 original size:21 final size:22
Alignment explanation
Indices: 57516329--57516375 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
57516319 CTCTGCTCAA
*
57516329 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
57516350 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
57516372 ACTC
1 ACTC
57516376 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:57533155 original size:245 final size:245
Alignment explanation
Indices: 57532725--57533217 Score: 986
Period size: 245 Copynumber: 2.0 Consensus size: 245
57532715 CTCGTTTTTG
57532725 GGATTTGCAAGCTAAAGTTTAGTTTCTGTTTCTTTCAAAACAAAAAGAAAAAGAAAATTTGCTTG
1 GGATTTGCAAGCTAAAGTTTAGTTTCTGTTTCTTTCAAAACAAAAAGAAAAAGAAAATTTGCTTG
57532790 CCTTTTTATTATAAAGGTTTTATGATTATTCATCGCAATGTAGGGTATGTTACTTCAAAAAGATT
66 CCTTTTTATTATAAAGGTTTTATGATTATTCATCGCAATGTAGGGTATGTTACTTCAAAAAGATT
57532855 AAGTTCTTTAATGCTTATGGAGTTTAGTCTCCGACTGACTGATATTGTGTTGAAATATTTGTAGA
131 AAGTTCTTTAATGCTTATGGAGTTTAGTCTCCGACTGACTGATATTGTGTTGAAATATTTGTAGA
57532920 AAATAATGCTTGATGAAGGCATGACTAGGCTGGCCATACATAGTCTTACT
196 AAATAATGCTTGATGAAGGCATGACTAGGCTGGCCATACATAGTCTTACT
57532970 GGATTTGCAAGCTAAAGTTTAGTTTCTGTTTCTTTCAAAACAAAAAGAAAAAGAAAATTTGCTTG
1 GGATTTGCAAGCTAAAGTTTAGTTTCTGTTTCTTTCAAAACAAAAAGAAAAAGAAAATTTGCTTG
57533035 CCTTTTTATTATAAAGGTTTTATGATTATTCATCGCAATGTAGGGTATGTTACTTCAAAAAGATT
66 CCTTTTTATTATAAAGGTTTTATGATTATTCATCGCAATGTAGGGTATGTTACTTCAAAAAGATT
57533100 AAGTTCTTTAATGCTTATGGAGTTTAGTCTCCGACTGACTGATATTGTGTTGAAATATTTGTAGA
131 AAGTTCTTTAATGCTTATGGAGTTTAGTCTCCGACTGACTGATATTGTGTTGAAATATTTGTAGA
57533165 AAATAATGCTTGATGAAGGCATGACTAGGCTGGCCATACATAGTCTTACT
196 AAATAATGCTTGATGAAGGCATGACTAGGCTGGCCATACATAGTCTTACT
57533215 GGA
1 GGA
57533218 AGCTCAGAGA
Statistics
Matches: 248, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
245 248 1.00
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (245 bp):
GGATTTGCAAGCTAAAGTTTAGTTTCTGTTTCTTTCAAAACAAAAAGAAAAAGAAAATTTGCTTG
CCTTTTTATTATAAAGGTTTTATGATTATTCATCGCAATGTAGGGTATGTTACTTCAAAAAGATT
AAGTTCTTTAATGCTTATGGAGTTTAGTCTCCGACTGACTGATATTGTGTTGAAATATTTGTAGA
AAATAATGCTTGATGAAGGCATGACTAGGCTGGCCATACATAGTCTTACT
Found at i:57537617 original size:28 final size:28
Alignment explanation
Indices: 57537585--57537640 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
57537575 AAATTAAAAG
57537585 TCTATTAACTTTGCAGTCTATGTCAGTA
1 TCTATTAACTTTGCAGTCTATGTCAGTA
57537613 TCTATTAACTTTGCAGTCTATGTCAGTA
1 TCTATTAACTTTGCAGTCTATGTCAGTA
57537641 ATTAATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.43
Consensus pattern (28 bp):
TCTATTAACTTTGCAGTCTATGTCAGTA
Found at i:57538815 original size:4 final size:4
Alignment explanation
Indices: 57538806--57538849 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
57538796 CTGTCGGGAC
* *
57538806 CATA CATA C--A CATG CATG CATA CATA CATA CATA CATA CATA CA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CA
57538850 ATTGTTGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
4 34 0.94
ACGTcount: A:0.45, C:0.27, G:0.05, T:0.23
Consensus pattern (4 bp):
CATA
Found at i:57540937 original size:16 final size:17
Alignment explanation
Indices: 57540902--57540936 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
57540892 TAGAAGGGAC
57540902 TTTGTATTTGTTTTTGT
1 TTTGTATTTGTTTTTGT
57540919 TTTGT-TTTGTTTTT-T
1 TTTGTATTTGTTTTTGT
57540934 TTT
1 TTT
57540937 TTTCTTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 9 0.50
17 5 0.28
ACGTcount: A:0.03, C:0.00, G:0.14, T:0.83
Consensus pattern (17 bp):
TTTGTATTTGTTTTTGT
Found at i:57541356 original size:2 final size:2
Alignment explanation
Indices: 57541349--57541373 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
57541339 CACTCCATAA
57541349 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
57541374 CAAAAATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57541416 original size:16 final size:17
Alignment explanation
Indices: 57541395--57541438 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
57541385 CCTTAATAAT
*
57541395 AATAAAT-ATTTTAAAA
1 AATAAATAATTTCAAAA
57541411 AATAAATAAATTTCAAAA
1 AATAAAT-AATTTCAAAA
57541429 AATAAA-AATT
1 AATAAATAATT
57541439 ATAAATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 11 0.44
18 14 0.56
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (17 bp):
AATAAATAATTTCAAAA
Done.