Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 190 of 250
Found at i:59639026 original size:3 final size:3
Alignment explanation
Indices: 59639011--59639080 Score: 51
Period size: 3 Copynumber: 24.0 Consensus size: 3
59639001 AGTGAAGATG
* *
59639011 ATA ATA ATG ATA ATAA ATA A-A A-A ACTA ATA ATA CTA ATA ATA AT-
1 ATA ATA ATA ATA AT-A ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA
*
59639055 ATA ATA GTA ATA ATCA A-A ATA A-A ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA
59639081 GCAATAACAT
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
2 10 0.19
3 37 0.69
4 7 0.13
ACGTcount: A:0.64, C:0.04, G:0.03, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:59639116 original size:20 final size:20
Alignment explanation
Indices: 59639093--59639140 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
59639083 AATAACATTG
59639093 AAAGTAAAAA-AATAAATAAA
1 AAAGTAAAAAGAATAAA-AAA
59639113 AAAG-AAAAAGAATAAAAAA
1 AAAGTAAAAAGAATAAAAAA
59639132 AATAGTAAA
1 AA-AGTAAA
59639141 TAAACGAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 10 0.40
20 12 0.48
21 3 0.12
ACGTcount: A:0.79, C:0.00, G:0.08, T:0.12
Consensus pattern (20 bp):
AAAGTAAAAAGAATAAAAAA
Found at i:59641003 original size:41 final size:41
Alignment explanation
Indices: 59640926--59641003 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
59640916 TGACTTCAAC
* * *
59640926 CTGCTCCACTGCAACTTCAGATAGATAAGGTTTGTTTTGAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTTTTGAT
*
59640967 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTTT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTTT
59641004 ATTTATAGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (41 bp):
CTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTTTTGAT
Found at i:59641200 original size:68 final size:68
Alignment explanation
Indices: 59641116--59641786 Score: 1009
Period size: 68 Copynumber: 9.9 Consensus size: 68
59641106 ATCTACTCCT
* ** * * *
59641116 CTGAAACTTCAAGGAGATCTGCTGTGGCTTCGAGCCGCTCTAACGTCATTTCAAGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
59641181 CCG
66 CCG
* * * *
59641184 CTGAAACTTCAAGGAGATTTGTTGTGGCTTCTAGCTGCTCTAACGCCATTTCAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
59641249 CCG
66 CCG
* * *
59641252 CTGAAACTTTAAGGAGATCTGTTGTGGCTTTTAGCCGTTCCAACGCCATTTTAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
*
59641317 CCA
66 CCG
* * *
59641320 CTAAAATTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
59641385 CCG
66 CCG
*
59641388 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
*
59641453 CAG
66 CCG
* * * * *
59641456 CTGAAACTTCAAAGAGACCTGCTGTAGCTTTTAGCCGCCCCAACGCCATTTCAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
59641521 CCG
66 CCG
* *
59641524 CTGAAACTTCAAGGAGATCTATTGTGGCTTTTAGCCGCTCCAACTCCATTTCAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
59641589 CCG
66 CCG
* * * * *
59641592 CTGAAACTTCAAGAAGATCTGTTGTAGCTTCTAGCTGCTCTAACGCCATTTCAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
59641657 CCG
66 CCG
* * *
59641660 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCTAACGACATTTCAGGGAGAAAAGAT
1 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
59641725 CCG
66 CCG
* * *
59641728 TTGAAACTTCAAGGAGATCTGCTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAGA
1 CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGA
59641787 TAAAATCTAC
Statistics
Matches: 547, Mismatches: 56, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 547 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
CCG
Found at i:59641955 original size:88 final size:87
Alignment explanation
Indices: 59641801--59641974 Score: 235
Period size: 88 Copynumber: 2.0 Consensus size: 87
59641791 ATCTACAATT
* * * * * *
59641801 TTCAGCCTGTTACCCTATTGCTTAGGGGGTTAAGGCCCATCGCCTTCGATCTATTTCCTTACTGC
1 TTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGCCCACCGCCTTCGATCTAGTTCCCTACTGC
59641866 TTAGGGTA-ATAAGATCTTGTAAA
66 TTAGGG-AGATAAGATC-TGTAAA
* *
59641889 TTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCGTCTTCGATCT-GTTCCACTACTG
1 TTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGCCCACCGCCTTCGATCTAGTTCC-CTACTG
59641953 CTTAGGGAGATAAGATCTGTAA
65 CTTAGGGAGATAAGATCTGTAA
59641975 TTTTCAGACG
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
87 10 0.13
88 66 0.87
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (87 bp):
TTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGCCCACCGCCTTCGATCTAGTTCCCTACTGC
TTAGGGAGATAAGATCTGTAAA
Found at i:59649008 original size:14 final size:14
Alignment explanation
Indices: 59648989--59649015 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
59648979 ATAGAGATAT
59648989 AAATAGATAAATAC
1 AAATAGATAAATAC
59649003 AAATAGATAAATA
1 AAATAGATAAATA
59649016 ATAGTATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.04, G:0.07, T:0.22
Consensus pattern (14 bp):
AAATAGATAAATAC
Found at i:59649166 original size:12 final size:12
Alignment explanation
Indices: 59649149--59649181 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
59649139 ATGACATTAA
59649149 AATAATA-ACAAT
1 AATAATATA-AAT
59649161 AATAATATAAAT
1 AATAATATAAAT
59649173 AATAATATA
1 AATAATATA
59649182 TAAAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 19 0.95
13 1 0.05
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (12 bp):
AATAATATAAAT
Found at i:59649176 original size:15 final size:13
Alignment explanation
Indices: 59649149--59649205 Score: 55
Period size: 14 Copynumber: 4.2 Consensus size: 13
59649139 ATGACATTAA
*
59649149 AATA-ATAACAAT
1 AATATATAAAAAT
59649161 AATAATATAAATAAT
1 AAT-ATATAAA-AAT
59649176 AATATATAAAAA-
1 AATATATAAAAAT
59649188 AATTATAGTAAAAAT
1 AA-TATA-TAAAAAT
59649203 AAT
1 AAT
59649206 GATAACAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
12 5 0.13
13 7 0.18
14 18 0.47
15 8 0.21
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (13 bp):
AATATATAAAAAT
Found at i:59654915 original size:26 final size:26
Alignment explanation
Indices: 59654869--59654921 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
59654859 TCAAACATGC
*
59654869 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
59654895 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
59654921 A
1 A
59654922 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:59656441 original size:26 final size:26
Alignment explanation
Indices: 59656405--59656512 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
59656395 TGAAATTCCC
* *
59656405 ATCATGGAACATTTACCTAAACCGTT
1 ATCATGGAACATTTACCTAACCCATT
59656431 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
59656457 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
59656483 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
59656509 ATCA
1 ATCA
59656513 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:59659387 original size:138 final size:138
Alignment explanation
Indices: 59659231--59659515 Score: 444
Period size: 138 Copynumber: 2.1 Consensus size: 138
59659221 AGAGAACATA
* * * *
59659231 AATATAATTAATATATGAATTTGATTCAAACAAAATATTAATTGTATATCTTTTACCGAATTTAT
1 AATATAATTAATATATGAATTTGATTCAAACAAAATACTAATTGTATATATTTCACAGAATTTAT
* *
59659296 TAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTT
66 TAATATAAACAATTATATTAATTAAATTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTT
59659361 TTGGAAAG
131 TTGGAAAG
* * * * *
59659369 AATACAATTAATATATGAATTTGATTCATATAAAATACTAATTGTATATATTTCATATAATTTAT
1 AATATAATTAATATATGAATTTGATTCAAACAAAATACTAATTGTATATATTTCACAGAATTTAT
* * *
59659434 TAATATAAACAATTATATTAATTAAATTCGGTCAAAATGTAAAAGACATGGAAATTAATATTCTT
66 TAATATAAACAATTATATTAATTAAATTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTT
59659499 TTGGAAAG
131 TTGGAAAG
59659507 AATATAATT
1 AATATAATT
59659516 CATTTTTCTA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
138 132 1.00
ACGTcount: A:0.46, C:0.07, G:0.08, T:0.39
Consensus pattern (138 bp):
AATATAATTAATATATGAATTTGATTCAAACAAAATACTAATTGTATATATTTCACAGAATTTAT
TAATATAAACAATTATATTAATTAAATTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTT
TTGGAAAG
Found at i:59663702 original size:16 final size:16
Alignment explanation
Indices: 59663681--59663711 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
59663671 ATTCATTGAT
*
59663681 AAACATAGAAAAAAAC
1 AAACATACAAAAAAAC
59663697 AAACATACAAAAAAA
1 AAACATACAAAAAAA
59663712 TCGTAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.13, G:0.03, T:0.06
Consensus pattern (16 bp):
AAACATACAAAAAAAC
Found at i:59666029 original size:22 final size:21
Alignment explanation
Indices: 59665999--59666045 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
59665989 TACAAATTAA
59665999 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
59666021 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
59666042 ATCT
1 ATCT
59666046 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:59666051 original size:19 final size:19
Alignment explanation
Indices: 59666016--59666075 Score: 79
Period size: 17 Copynumber: 3.2 Consensus size: 19
59666006 AGATTACAAG
59666016 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
59666037 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
59666054 ATCATATCTAAGATTTCAT
1 ATCATATCTAAGATTGCAT
59666073 ATC
1 ATC
59666076 CTTAAAGATT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
17 16 0.44
19 11 0.31
20 1 0.03
21 8 0.22
ACGTcount: A:0.35, C:0.17, G:0.08, T:0.40
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:59666619 original size:87 final size:86
Alignment explanation
Indices: 59666479--59666643 Score: 197
Period size: 87 Copynumber: 1.9 Consensus size: 86
59666469 GCAATATAGA
* *
59666479 GATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTGTGTCTTCA
1 GATGCCAAATCATCTTAGATCTGCTTCA-CGTAAACACATGAAAGCCAAATCTGCTATGTCTTCA
59666544 ATTCGCTCCTTGTGAACACAAG
65 ATTCGCTCCTTGTGAACACAAG
* * * * * * *
59666566 GATGCCAAATCATCTTGGATCTGCTTCA-GTAAAATCATATGAAGGTCAGATCTGTTATGTCTTT
1 GATGCCAAATCATCTTAGATCTGCTTCACGT-AAA-CACATGAAAGCCAAATCTGCTATGTCTTC
* *
59666630 AATTTGCTTCTTGT
64 AATTCGCTCCTTGT
59666644 AAAATTATGA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
85 2 0.03
86 3 0.05
87 60 0.92
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (86 bp):
GATGCCAAATCATCTTAGATCTGCTTCACGTAAACACATGAAAGCCAAATCTGCTATGTCTTCAA
TTCGCTCCTTGTGAACACAAG
Found at i:59666855 original size:261 final size:261
Alignment explanation
Indices: 59666391--59666886 Score: 762
Period size: 261 Copynumber: 1.9 Consensus size: 261
59666381 GCAAACTCAG
* *
59666391 GATTGTCATGTTGATATCTTCGATCTGCTCTCCGTCGAACACAGAGACGCCAAATTTGCTTCTTC
1 GATTGTCATATTGATATCTTCGATCTGCTCTCCGTCGAACACAGAGACGCCAAATATGCTTCTTC
* * *
59666456 GATTTGTTTTCTAGCAATATAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGA
66 GATTTGTTTTCTAACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGA
* * *
59666521 AAGCCAAATCTGCTGTGTCTTCAATTCGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGGAT
131 AAACCAAATCTGCTATGTCTTCAATTCGCTCCTTGTGAACACAAGGATGCCAAACCATCTTGGAT
*
59666586 CTGCTTCAGTA-AAATCATATGAAGGTCAGATCTGTTATGTCTTTAATTTGCTTCTTGTAAAATT
196 CTGCTTCAGTATAAA-CATATGAAGGTCAGATCTGCTATGTCTTTAATTTGCTTCTTGTAAAATT
59666650 AT
260 AT
* * * * *
59666652 GATTGTCCTATTGATATCTTCGATCTGCTCTCCGTCGAATATAGAGACGCCGAATATGTTTCTTC
1 GATTGTCATATTGATATCTTCGATCTGCTCTCCGTCGAACACAGAGACGCCAAATATGCTTCTTC
* * *
59666717 GATTTGTTTTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGGTTCAGCGTAAGCACGCGA
66 GATTTGTTTTCTAACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGA
* * *
59666782 AAACCAAATCTGCTATGTCTTCGATTTGTTCCTTGT-AAGCACAAGGATGCCAAACCATCTTGGA
131 AAACCAAATCTGCTATGTCTTCAATTCGCTCCTTGTGAA-CACAAGGATGCCAAACCATCTTGGA
* *
59666846 TCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGT
195 TCTGCTTCAGTATAAACATATGAAGGTCAGATCTGCTATGT
59666887 ATCTGCTCTC
Statistics
Matches: 211, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
260 2 0.01
261 206 0.98
262 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (261 bp):
GATTGTCATATTGATATCTTCGATCTGCTCTCCGTCGAACACAGAGACGCCAAATATGCTTCTTC
GATTTGTTTTCTAACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGA
AAACCAAATCTGCTATGTCTTCAATTCGCTCCTTGTGAACACAAGGATGCCAAACCATCTTGGAT
CTGCTTCAGTATAAACATATGAAGGTCAGATCTGCTATGTCTTTAATTTGCTTCTTGTAAAATTA
T
Found at i:59668014 original size:1 final size:1
Alignment explanation
Indices: 59668004--59668064 Score: 59
Period size: 1 Copynumber: 61.0 Consensus size: 1
59667994 GGCTTCTCCA
* * * * * * *
59668004 TTTTTATTTTTTTCTTTTTTATTTTTTTATTTTTTTATTTTTATTTTTTTCTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
59668065 GAAATAGAAG
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.08, C:0.03, G:0.00, T:0.89
Consensus pattern (1 bp):
T
Found at i:59668021 original size:8 final size:8
Alignment explanation
Indices: 59668004--59668061 Score: 77
Period size: 8 Copynumber: 7.6 Consensus size: 8
59667994 GGCTTCTCCA
59668004 TTTTTATT
1 TTTTTATT
*
59668012 TTTTT-CT
1 TTTTTATT
59668019 TTTTTATT
1 TTTTTATT
59668027 TTTTTATT
1 TTTTTATT
59668035 TTTTTA--
1 TTTTTATT
59668041 TTTTTATT
1 TTTTTATT
*
59668049 TTTTTCTT
1 TTTTTATT
59668057 TTTTT
1 TTTTT
59668062 TTTGAAATAG
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
6 6 0.14
7 6 0.14
8 32 0.73
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTATT
Found at i:59668062 original size:23 final size:21
Alignment explanation
Indices: 59668003--59668064 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 21
59667993 TGGCTTCTCC
* *
59668003 ATTTTTATTTTTTTCTTTTTT
1 ATTTTTTTTTTTTTTTTTTTT
*
59668024 ATTTTTTTATTTTTTTATTTTT
1 ATTTTTTT-TTTTTTTTTTTTT
*
59668046 ATTTTTTTCTTTTTTTTTT
1 ATTTTTTTTTTTTTTTTTT
59668065 GAAATAGAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 16 0.46
22 19 0.54
ACGTcount: A:0.10, C:0.03, G:0.00, T:0.87
Consensus pattern (21 bp):
ATTTTTTTTTTTTTTTTTTTT
Found at i:59674862 original size:19 final size:19
Alignment explanation
Indices: 59674827--59674905 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
59674817 AGATTACAAG
59674827 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
59674848 ATAATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
59674865 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
59674884 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
59674903 ATC
1 ATC
59674906 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 30 0.56
20 1 0.02
21 7 0.13
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:59674882 original size:36 final size:38
Alignment explanation
Indices: 59674827--59674899 Score: 123
Period size: 36 Copynumber: 2.0 Consensus size: 38
59674817 AGATTACAAG
59674827 ATCATATCTTCAAGATTGCATATAATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATAATATCTAAGATTGT
*
59674865 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATAATATCTAAGATTG
59674900 CATATCCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
37 1 0.03
38 8 0.24
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATAATATCTAAGATTGT
Found at i:59674914 original size:36 final size:35
Alignment explanation
Indices: 59674828--59674915 Score: 108
Period size: 36 Copynumber: 2.4 Consensus size: 35
59674818 GATTACAAGA
59674828 TCATATCTTCAAGATTGCATATAATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATAATATCTAAGATTG
*
59674864 TATCATATC-TAAGATTGCATATCATATCTAAGATTG
1 --TCATATCTTAAGATTGCATATAATATCTAAGATTG
59674900 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
59674916 ATATTTCCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 31 0.67
37 1 0.02
38 7 0.15
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATAATATCTAAGATTG
Found at i:59678013 original size:20 final size:20
Alignment explanation
Indices: 59677990--59678039 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
59677980 AAATCCAAAT
*
59677990 TAAAATACTAAAATTCAGGA
1 TAAAATACTAAAATTCAAGA
*
59678010 TAAAATCCTAAAATTCAAGA
1 TAAAATACTAAAATTCAAGA
59678030 TAAGAATACT
1 TAA-AATACT
59678040 GATGGGACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.54, C:0.12, G:0.08, T:0.26
Consensus pattern (20 bp):
TAAAATACTAAAATTCAAGA
Found at i:59678145 original size:36 final size:36
Alignment explanation
Indices: 59678105--59678177 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
59678095 TACAATCCTT
59678105 TCTTCTAAATTTATCATTATGTTTAGAAAAAATAAC
1 TCTTCTAAATTTATCATTATGTTTAGAAAAAATAAC
59678141 TCTTCTAAATTTATCATTATGTTTAGAAAAAATAAC
1 TCTTCTAAATTTATCATTATGTTTAGAAAAAATAAC
59678177 T
1 T
59678178 ACAATTCTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.42
Consensus pattern (36 bp):
TCTTCTAAATTTATCATTATGTTTAGAAAAAATAAC
Found at i:59684315 original size:5 final size:5
Alignment explanation
Indices: 59684305--59684331 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
59684295 ATAAGAATAT
59684305 TATTA TATTA TATTA TATTA TATTA TA
1 TATTA TATTA TATTA TATTA TATTA TA
59684332 ACTAAACTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:59688708 original size:47 final size:47
Alignment explanation
Indices: 59688639--59688728 Score: 153
Period size: 47 Copynumber: 1.9 Consensus size: 47
59688629 TGTATCCGTT
**
59688639 ACCGGAATAGGGTTATGAGGCATTACCAAACTTATACACTAACCATC
1 ACCGGAATAGGGTTACAAGGCATTACCAAACTTATACACTAACCATC
*
59688686 ACCGGAATAGGGTTACAAGGCATTACCAGACTTATACACTAAC
1 ACCGGAATAGGGTTACAAGGCATTACCAAACTTATACACTAAC
59688729 ATTTATACAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22
Consensus pattern (47 bp):
ACCGGAATAGGGTTACAAGGCATTACCAAACTTATACACTAACCATC
Found at i:59691350 original size:27 final size:27
Alignment explanation
Indices: 59691244--59691358 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
59691234 AGCATGGCTG
* *
59691244 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
59691270 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGA-ACAGATATAT-GTGGCAGAGCCA
59691298 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * * * *
59691325 CCAGATCAGATATTTTTTGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
59691352 CCAGAAC
1 CCAGAAC
59691359 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.06
27 56 0.72
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:59692986 original size:26 final size:26
Alignment explanation
Indices: 59692950--59693057 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
59692940 TGAAATTCCC
*
59692950 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
59692976 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
59693002 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
59693028 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
59693054 ATCA
1 ATCA
59693058 ATTTGTGTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:59693750 original size:15 final size:16
Alignment explanation
Indices: 59693730--59693768 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
59693720 AAGCCCTATT
59693730 TTTCCTTTCTT-TTTC
1 TTTCCTTTCTTCTTTC
*
59693745 TTTCCTTTTTTCTTTC
1 TTTCCTTTCTTCTTTC
59693761 TTT-CTTTC
1 TTTCCTTTC
59693769 CCTGTTCTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTCCTTTCTTCTTTC
Found at i:59693861 original size:14 final size:15
Alignment explanation
Indices: 59693825--59693861 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
59693815 TTTCTTTTAT
*
59693825 TTATTATAACTATTA
1 TTATTATATCTATTA
59693840 -TATTATATC-ATTA
1 TTATTATATCTATTA
59693853 TTATTATAT
1 TTATTATAT
59693862 TTTAAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATTATATCTATTA
Found at i:59693878 original size:21 final size:21
Alignment explanation
Indices: 59693827--59693889 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
59693817 TCTTTTATTT
* *
59693827 ATTATAACTATTATA--TTAT
1 ATTATAATTATTATATTTTAA
* *
59693846 ATCATTATTATTATATTTTAA
1 ATTATAATTATTATATTTTAA
59693867 ATTATAATTATTAT-TTCTTAA
1 ATTATAATTATTATATT-TTAA
59693888 AT
1 AT
59693890 ATTAAGTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 12 0.34
20 2 0.06
21 21 0.60
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTATAATTATTATATTTTAA
Found at i:59695716 original size:10 final size:10
Alignment explanation
Indices: 59695703--59695747 Score: 63
Period size: 10 Copynumber: 4.4 Consensus size: 10
59695693 AATAAATAAG
59695703 AATATTATAT
1 AATATTATAT
59695713 AATATTATAT
1 AATATTATAT
*
59695723 TATATTATAT
1 AATATTATAT
*
59695733 TATATTATTAT
1 AATATTA-TAT
59695744 AATA
1 AATA
59695748 CAATGATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
10 26 0.81
11 6 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
AATATTATAT
Found at i:59695717 original size:5 final size:5
Alignment explanation
Indices: 59695704--59695740 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
59695694 ATAAATAAGA
*
59695704 ATATT ATATA ATATT ATATT ATATT ATATT ATATT AT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT AT
59695741 TATAATACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:59695724 original size:15 final size:15
Alignment explanation
Indices: 59695704--59695747 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
59695694 ATAAATAAGA
59695704 ATATTATATAATATT
1 ATATTATATAATATT
*
59695719 ATATTATATTATATT
1 ATATTATATAATATT
59695734 ATATTATTATAATA
1 ATATTA-TATAATA
59695748 CAATGATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 20 0.77
16 6 0.23
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATATTATATAATATT
Found at i:59701730 original size:35 final size:35
Alignment explanation
Indices: 59701686--59701754 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
59701676 TTTACGATAG
59701686 AAAAAATATAATTTCACTGTTTTAATAGACTATAA
1 AAAAAATATAATTTCACTGTTTTAATAGACTATAA
59701721 AAAAAATATAATTTCACTGTTTTAATAGACTATA
1 AAAAAATATAATTTCACTGTTTTAATAGACTATA
59701755 TATTCATACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.38
Consensus pattern (35 bp):
AAAAAATATAATTTCACTGTTTTAATAGACTATAA
Found at i:59703957 original size:18 final size:19
Alignment explanation
Indices: 59703922--59703977 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
59703912 AAATATGAAA
*
59703922 TTTGGAATTTTTATAAATC
1 TTTGGAATTTTTAAAAATC
*
59703941 TTTGGAA-TTTTAAAAATTG
1 TTTGGAATTTTTAAAAA-TC
* *
59703960 TTTTGAATTTTTCAAAAT
1 TTTGGAATTTTTAAAAAT
59703978 TATTTTAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
18 8 0.26
19 15 0.48
20 8 0.26
ACGTcount: A:0.34, C:0.04, G:0.11, T:0.52
Consensus pattern (19 bp):
TTTGGAATTTTTAAAAATC
Found at i:59703971 original size:20 final size:20
Alignment explanation
Indices: 59703921--59703988 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 20
59703911 AAAATATGAA
* *
59703921 ATTTGGAATTTTTATAAA-T
1 ATTTTGAATTTTTAAAAATT
* *
59703940 CTTTGGAA-TTTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
* *
59703959 GTTTTGAATTTTTCAAAATT
1 ATTTTGAATTTTTAAAAATT
*
59703979 ATTTTAAATT
1 ATTTTGAATT
59703989 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
18 8 0.20
19 14 0.35
20 18 0.45
ACGTcount: A:0.35, C:0.03, G:0.09, T:0.53
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Found at i:59709890 original size:17 final size:17
Alignment explanation
Indices: 59709847--59709890 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
59709837 GTGATCTTCA
59709847 AAGATATGCAATATTAG
1 AAGATATGCAATATTAG
* *
59709864 ATATGATATGTAATTTTAG
1 A-A-GATATGCAATATTAG
59709883 AAGATATG
1 AAGATATG
59709891 ATTCCGTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 7 0.30
18 2 0.09
19 14 0.61
ACGTcount: A:0.43, C:0.02, G:0.18, T:0.36
Consensus pattern (17 bp):
AAGATATGCAATATTAG
Found at i:59715035 original size:20 final size:20
Alignment explanation
Indices: 59715010--59715051 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
59715000 AAATGAATAC
59715010 TATAATAATT-ATAATATAAT
1 TATAAT-ATTAATAATATAAT
*
59715030 TATAATATTAATAATATTAT
1 TATAATATTAATAATATAAT
59715050 TA
1 TA
59715052 ACAATCATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TATAATATTAATAATATAAT
Found at i:59717487 original size:63 final size:61
Alignment explanation
Indices: 59717410--59717563 Score: 175
Period size: 62 Copynumber: 2.5 Consensus size: 61
59717400 AACATCCTAC
* * * *
59717410 ACACGACCTGGGCACACACCCATGTGCCTTGGCCGTATGGTT-TTCAAGCACAAACAGTGAGTT
1 ACACGGCCT-GGCACATACCCATGT-CCCTGGCCGTATGGTTCTT-AAACACAAACAGTGAGTT
* * * * *
59717473 ACACGGCCTAGGCACATGCCCGTGTCCCTGGCTGTGTGGTTCTTAAATACAAACAGTGAGTT
1 ACACGGCCT-GGCACATACCCATGTCCCTGGCCGTATGGTTCTTAAACACAAACAGTGAGTT
*
59717535 ACACGGCCTGCCACATACCCATGTCCCTG
1 ACACGGCCTGGCACATACCCATGTCCCTG
59717564 ACCATGAGAA
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
61 17 0.22
62 38 0.49
63 22 0.29
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (61 bp):
ACACGGCCTGGCACATACCCATGTCCCTGGCCGTATGGTTCTTAAACACAAACAGTGAGTT
Found at i:59720421 original size:8 final size:8
Alignment explanation
Indices: 59720408--59720441 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
59720398 ATAGATTCTA
59720408 TTATTTTT
1 TTATTTTT
59720416 TTA-TTTT
1 TTATTTTT
59720423 TTATTTTTT
1 TTA-TTTTT
59720432 TTATTTTT
1 TTATTTTT
59720440 TT
1 TT
59720442 TATATTTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.29
8 10 0.42
9 7 0.29
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTATTTTT
Found at i:59720431 original size:9 final size:9
Alignment explanation
Indices: 59720411--59720444 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
59720401 GATTCTATTA
59720411 TTTTTTTA-
1 TTTTTTTAT
59720419 -TTTTTTAT
1 TTTTTTTAT
59720427 TTTTTTTAT
1 TTTTTTTAT
59720436 TTTTTTTAT
1 TTTTTTTAT
59720445 ATTTAGTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 7 0.29
9 17 0.71
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:59720432 original size:18 final size:18
Alignment explanation
Indices: 59720406--59720448 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
59720396 TAATAGATTC
59720406 TATTATTTTT-TTATTTTT
1 TATTATTTTTATT-TTTTT
*
59720424 TATTTTTTTTATTTTTTT
1 TATTATTTTTATTTTTTT
59720442 TA-TATTT
1 TATTATTT
59720449 AGTTTCTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 4 0.18
18 16 0.73
19 2 0.09
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (18 bp):
TATTATTTTTATTTTTTT
Found at i:59720551 original size:17 final size:16
Alignment explanation
Indices: 59720510--59720553 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
59720500 TTTTTAACGT
*
59720510 AAATATGAAAGCAAAA
1 AAATATTAAAGCAAAA
59720526 AAATAATTAAAGCAAAA
1 AAAT-ATTAAAGCAAAA
*
59720543 AGTATATTAAA
1 A-AATATTAAA
59720554 AATTGATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 4 0.17
17 18 0.75
18 2 0.08
ACGTcount: A:0.66, C:0.05, G:0.09, T:0.20
Consensus pattern (16 bp):
AAATATTAAAGCAAAA
Found at i:59725109 original size:3 final size:3
Alignment explanation
Indices: 59725103--59725132 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
59725093 AATAGTAGTA
59725103 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
59725133 GTAAAGATCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:59725394 original size:3 final size:3
Alignment explanation
Indices: 59725386--59725732 Score: 131
Period size: 3 Copynumber: 113.7 Consensus size: 3
59725376 GTTTAATAGT
* * * * *
59725386 ATA ATA ATA ATA ATA ATA GTA CACTA ATA TATG TTA ACA ACAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -A-TA ATA -ATA ATA ATA A-TA ATA ATA
* * * * *
59725435 AT- ATA AAA AAA ATA GGA-A ATA ATA ATA ACGTA CTA ATA AGA ACA ATA
1 ATA ATA ATA ATA ATA --ATA ATA ATA ATA A--TA ATA ATA ATA ATA ATA
* * * *
59725482 ATA GGTTA ATA ATA ATG ATA ATA GTA AAA ATA ATA ATA ATA AT- ATA
1 ATA --ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
** * *
59725528 ATA ATA AGG ATA A-A ATGA AGA ATA ATA GTA ATA CATTA ATA ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA -A-TA ATA ATA ATA
** * *
59725575 A-A ATCA GGA ATA ATA ATA ACA ATA ATA AT- ATAA ATA ATA AT- GTA
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
* * * * * * * * *
59725619 AAA ATA GTA ATA GTA ATA ATA ATG ATA ACA GAAA ATA ATG GTT ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* * * * *
59725665 GTGA A-A ATA ATA ATA ATA ATG ATA ATA GTA A-A A-A ATA CTA GTA
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
59725708 ATA ACA ATA ATA AT- ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
59725733 TAAAATAAAA
Statistics
Matches: 250, Mismatches: 67, Indels: 54
0.67 0.18 0.15
Matches are distributed among these distances:
2 20 0.08
3 205 0.82
4 16 0.06
5 9 0.04
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:59729089 original size:47 final size:47
Alignment explanation
Indices: 59729060--59729320 Score: 432
Period size: 47 Copynumber: 5.6 Consensus size: 47
59729050 ATATATGAGC
* * *
59729060 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* * *
59729107 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
*
59729154 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATTTGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* * *
59729201 TAAGACCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
59729248 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
59729295 TAAGGCCGAATGGCCAATGTGATGAA
1 TAAGGCCGAATGGCCAATGTGATGAA
59729321 CGTGGAAGTG
Statistics
Matches: 205, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 205 1.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
Found at i:59729127 original size:94 final size:94
Alignment explanation
Indices: 59729029--59729353 Score: 474
Period size: 94 Copynumber: 3.5 Consensus size: 94
59729019 TTAGGATTTT
* ** * *
59729029 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
59729094 TGCATTTGTGTGCTAAGGCCGAATGGCAA
66 TGCATTTGTGTGATAAGGCCGAATGGCCA
* * *
59729123 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
59729188 TGCATTTGTGTGATAAGACCGAATGGCCA
66 TGCATTTGTGTGATAAGGCCGAATGGCCA
*
59729217 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
59729282 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATTTGTGTGATAAGGCCGAATGGCCA
* * **
59729311 ATGTGATGAACGTGGAA-GTGTATATATGTGGGAA-GCCGAATGG
1 ATGTGATGAATGT-GAACATGTATATATGTGCTAAGGCCGAATGG
59729354 TTAATGCGAA
Statistics
Matches: 209, Mismatches: 21, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
93 9 0.04
94 197 0.94
95 3 0.01
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATTTGTGTGATAAGGCCGAATGGCCA
Found at i:59729150 original size:23 final size:23
Alignment explanation
Indices: 59729077--59729150 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
59729067 GAATGGCAAA
59729077 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
* * **
59729100 TGTG-TGCTAAGGCCG-A-ATGGCAAA
1 TGTGATG--AATG-TGAACAT-GCATT
59729124 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
59729147 TGTG
1 TGTG
59729151 TGCTAAGGCC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 17 0.47
24 13 0.36
25 3 0.08
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (23 bp):
TGTGATGAATGTGAACATGCATT
Found at i:59729270 original size:22 final size:22
Alignment explanation
Indices: 59729242--59729317 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
59729232 ACATGTATAT
59729242 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
59729264 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
59729286 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
59729311 ATGTGAT
1 ATGTGAT
59729318 GAACGTGGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:59729393 original size:46 final size:45
Alignment explanation
Indices: 59729334--59729423 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 45
59729324 GGAAGTGTAT
* * * *
59729334 ATATGTGGGAAGCCGAATGGTTAATGCGA-AATGTGTATGAGATGG
1 ATATGTGGAAAGCCAAATGGCTAATGCGAGAA-ATGTATGAGATGG
*
59729379 ATATGTGGTAAAGCCAAATGGCTAATGTGAGAAATGTATGAGATG
1 ATATGTGG-AAAGCCAAATGGCTAATGCGAGAAATGTATGAGATG
59729424 TGTATATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
45 8 0.21
46 28 0.74
47 2 0.05
ACGTcount: A:0.34, C:0.07, G:0.32, T:0.27
Consensus pattern (45 bp):
ATATGTGGAAAGCCAAATGGCTAATGCGAGAAATGTATGAGATGG
Found at i:59730917 original size:40 final size:40
Alignment explanation
Indices: 59730862--59731218 Score: 610
Period size: 40 Copynumber: 8.9 Consensus size: 40
59730852 AAGTTCAGTA
*
59730862 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
59730902 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
59730942 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
59730982 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
*
59731022 TGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
59731062 TGATATATGCAGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
*
59731102 TGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
59731142 TGATGTATCCGGGCTAAGTCCCGAAAAACATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
*
59731182 TGATATATCCGGGCTAA-ACCTCGAAG-GCATTCGTGCT
1 TGATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
59731219 GGAATCATGA
Statistics
Matches: 300, Mismatches: 16, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 12 0.04
40 288 0.96
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
Found at i:59731316 original size:57 final size:57
Alignment explanation
Indices: 59731226--59731405 Score: 229
Period size: 57 Copynumber: 3.2 Consensus size: 57
59731216 GCTGGAATCA
* * *
59731226 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTGTGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
** *
59731283 TGAGGCACTGTGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTGTGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* * * * * *
59731340 TGAGGCACTATGTGTGTGAGTTCTTTAATCGAGCGCTATGTATGCGAAATCAGTCAG-
1 TGAGGCACTGTGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGT
59731397 TG-GGCACTG
1 TGAGGCACTG
59731406 CATATGCGAA
Statistics
Matches: 106, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
56 6 0.06
57 99 0.93
58 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:59731353 original size:29 final size:29
Alignment explanation
Indices: 59731258--59731355 Score: 101
Period size: 29 Copynumber: 3.4 Consensus size: 29
59731248 CTTCAACCGA
* * *
59731258 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
* ** *
59731287 GCACTGTGTGTGCGAG-TTCTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
*
59731315 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
59731344 GCACTATGTGTG
1 GCACTATGTGTG
59731356 TGAGTTCTTT
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
28 22 0.40
29 33 0.60
ACGTcount: A:0.21, C:0.16, G:0.32, T:0.31
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:59731368 original size:29 final size:29
Alignment explanation
Indices: 59731226--59731386 Score: 114
Period size: 28 Copynumber: 5.7 Consensus size: 29
59731216 GCTGGAATCA
* * * *
59731226 TGAGGCACTGTGTGTGCAAGTTCTTCAAC
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
* * * ** *
59731255 CGA-GCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
* *
59731283 TGAGGCACTGTGTGTGCGAGTTCTTCAAT
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
* **
59731312 CGA-GCACTATGTGTGCGAGATT-GGTAAT
1 TGAGGCACTATGTGTGCGAG-TTCTTTAAT
*
59731340 TGAGGCACTATGTGTGTGAGTTCTTTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
* * *
59731369 CGA-GCGCTATGTATGCGA
1 TGAGGCACTATGTGTGCGA
59731387 AATCAGTCAG
Statistics
Matches: 98, Mismatches: 30, Indels: 9
0.72 0.22 0.07
Matches are distributed among these distances:
28 53 0.54
29 45 0.46
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (29 bp):
TGAGGCACTATGTGTGCGAGTTCTTTAAT
Found at i:59735036 original size:47 final size:47
Alignment explanation
Indices: 59735007--59735267 Score: 423
Period size: 47 Copynumber: 5.6 Consensus size: 47
59734997 ATATATGAGC
* * *
59735007 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* * *
59735054 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* *
59735101 TAAGGCCGAATGGCCAATGTGATGAGTGTGAACATGCATTTGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
* * *
59735148 TAAGACCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
59735195 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
59735242 TAAGGCCGAATGGCCAATGTGATGAA
1 TAAGGCCGAATGGCCAATGTGATGAA
59735268 CGTGGAAGTG
Statistics
Matches: 203, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 203 1.00
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
Found at i:59735074 original size:94 final size:94
Alignment explanation
Indices: 59734976--59735287 Score: 464
Period size: 94 Copynumber: 3.3 Consensus size: 94
59734966 TTAGGATTTT
* ** * *
59734976 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
59735041 TGCATTTGTGTGCTAAGGCCGAATGGCAA
66 TGCATTTGTGTGATAAGGCCGAATGGCCA
* * * *
59735070 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCCAATGTGATGAGTGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
59735135 TGCATTTGTGTGATAAGACCGAATGGCCA
66 TGCATTTGTGTGATAAGGCCGAATGGCCA
*
59735164 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
59735229 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATTTGTGTGATAAGGCCGAATGGCCA
* *
59735258 ATGTGATGAACGTGGAA-GTGTATATATGTG
1 ATGTGATGAATGT-GAACATGTATATATGTG
59735288 GGGAAGCCGA
Statistics
Matches: 196, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
94 193 0.98
95 3 0.02
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGTATATATGTGCTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATTTGTGTGATAAGGCCGAATGGCCA
Found at i:59735097 original size:23 final size:23
Alignment explanation
Indices: 59735024--59735097 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
59735014 GAATGGCAAA
59735024 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
* * **
59735047 TGTG-TGCTAAGGCCG-A-ATGGCAAA
1 TGTGATG--AATG-TGAACAT-GCATT
59735071 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
59735094 TGTG
1 TGTG
59735098 TGCTAAGGCC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 17 0.47
24 13 0.36
25 3 0.08
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (23 bp):
TGTGATGAATGTGAACATGCATT
Found at i:59735217 original size:22 final size:22
Alignment explanation
Indices: 59735189--59735264 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
59735179 ACATGTATAT
59735189 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
59735211 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
59735233 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
59735258 ATGTGAT
1 ATGTGAT
59735265 GAACGTGGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:59735301 original size:47 final size:47
Alignment explanation
Indices: 59734976--59735287 Score: 392
Period size: 47 Copynumber: 6.6 Consensus size: 47
59734966 TTAGGATTTT
* ** * * *
59734976 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * * * *
59735023 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * * *
59735070 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * * * *
59735117 ATGTGATGAGTGTGAACATGCATTTGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
59735164 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
59735211 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
59735258 ATGTGATGAACGTGGAA-GTGTATATATGTG
1 ATGTGATGAATGT-GAACATGTATATATGTG
59735288 GGGAAGCCGA
Statistics
Matches: 242, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 239 0.99
48 3 0.01
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:59735341 original size:46 final size:46
Alignment explanation
Indices: 59735281--59735371 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
59735271 GGAAGTGTAT
* * * *
59735281 ATATGTGGGGAAGCCGAATGGTTAATGCGA-AATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAGAA-ATGTATGAGATGG
* *
59735327 ATATGTGGTAAAGCCAAATGGCTAATGTGAGAAATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAGAAATGTATGAGATG
59735372 TGTATATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 36 0.95
47 2 0.05
ACGTcount: A:0.34, C:0.07, G:0.33, T:0.26
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAGAAATGTATGAGATGG
Found at i:59739193 original size:25 final size:24
Alignment explanation
Indices: 59739148--59739198 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
59739138 TTATGAAGTT
*
59739148 TTTCAAAAAATTATATAATTATAA
1 TTTCAAAAAAATATATAATTATAA
* *
59739172 TTTCAAAAAAAATATTTTATTATAA
1 TTTC-AAAAAAATATATAATTATAA
59739197 TT
1 TT
59739199 GTTGAAACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTCAAAAAAATATATAATTATAA
Found at i:59740238 original size:22 final size:22
Alignment explanation
Indices: 59740213--59740286 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
59740203 AATTTAAGGT
59740213 AAATAAAATATAAAACAGTTTA
1 AAATAAAATATAAAACAGTTTA
** * * * **
59740235 AAATAATTTAAAAAAAAATCAA
1 AAATAAAATATAAAACAGTTTA
*
59740257 CAAATAATATATAAAACAGTTTA
1 -AAATAAAATATAAAACAGTTTA
59740280 AAATAAA
1 AAATAAA
59740287 TAATATATAT
Statistics
Matches: 37, Mismatches: 14, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
22 21 0.57
23 16 0.43
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (22 bp):
AAATAAAATATAAAACAGTTTA
Found at i:59740304 original size:24 final size:24
Alignment explanation
Indices: 59740258--59740306 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
59740248 AAAAATCAAC
59740258 AAATAATATATAAAACAGTTTAAAAT
1 AAATAATATATAAAACA--TTAAAAT
59740284 AAATAATATATATAAAC-TTAAAA
1 AAATAATATATA-AAACATTAAAA
59740307 ATAAGAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 6 0.27
26 12 0.55
27 4 0.18
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (24 bp):
AAATAATATATAAAACATTAAAAT
Found at i:59742237 original size:45 final size:44
Alignment explanation
Indices: 59742168--59742284 Score: 119
Period size: 45 Copynumber: 2.6 Consensus size: 44
59742158 ATAATTTGTA
* * * * *
59742168 GCTTCAATCTGTTCCACTGTAACTTTATGGAAATAAGAG-TCGCTG
1 GCTTCAATCTGCTCTACTGCAACTTCAGGGAAATAAG-GCT-GCTG
* * * *
59742213 TCTTCAATCTGCTCTGCTGCAACTTCAGGGAGATAAGGCTGGTG
1 GCTTCAATCTGCTCTACTGCAACTTCAGGGAAATAAGGCTGCTG
*
59742257 GCTTCAATCTGCTCTATTGCAACTTCAG
1 GCTTCAATCTGCTCTACTGCAACTTCAG
59742285 AAAGATAAGA
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
44 29 0.49
45 30 0.51
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.32
Consensus pattern (44 bp):
GCTTCAATCTGCTCTACTGCAACTTCAGGGAAATAAGGCTGCTG
Found at i:59742804 original size:46 final size:46
Alignment explanation
Indices: 59742748--59742877 Score: 179
Period size: 46 Copynumber: 2.8 Consensus size: 46
59742738 TTATCCATCT
* * * *
59742748 CACTGTAACTCAGGGGTATAGGATTTGTACCATCTTCAATCAATCC
1 CACTGCAACTCAGGGGTATAGGATTTGTATCTTCTTCAAACAATCC
* *
59742794 CACTGCAACTCAGGGGTATAAGATTTGTATCTTCTTCAAACCATCC
1 CACTGCAACTCAGGGGTATAGGATTTGTATCTTCTTCAAACAATCC
* * *
59742840 CACTACAATTCAGGGGTATAGAATTTGTATCTTCTTCA
1 CACTGCAACTCAGGGGTATAGGATTTGTATCTTCTTCA
59742878 GTAAATTTGC
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (46 bp):
CACTGCAACTCAGGGGTATAGGATTTGTATCTTCTTCAAACAATCC
Found at i:59743398 original size:53 final size:53
Alignment explanation
Indices: 59743308--59743414 Score: 169
Period size: 53 Copynumber: 2.0 Consensus size: 53
59743298 ATTGGGAGCA
* *
59743308 TAACTCGAAATGAATAAATTAATCAAAGATAGCAAATGCAATAAGAAGGAAAT
1 TAACTCGAAATGAATAAATTAATCAAAAATAGAAAATGCAATAAGAAGGAAAT
* * *
59743361 TAACTTGAAATGAATAAGTTAATCAAAAATAGAAAATGTAATAAGAAGGAAAT
1 TAACTCGAAATGAATAAATTAATCAAAAATAGAAAATGCAATAAGAAGGAAAT
59743414 T
1 T
59743415 GATTGGGAGC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.55, C:0.07, G:0.15, T:0.23
Consensus pattern (53 bp):
TAACTCGAAATGAATAAATTAATCAAAAATAGAAAATGCAATAAGAAGGAAAT
Found at i:59748351 original size:29 final size:29
Alignment explanation
Indices: 59748279--59748386 Score: 101
Period size: 29 Copynumber: 3.8 Consensus size: 29
59748269 TTCACATATC
* * * *
59748279 TGTATCTGGCCCATTAAG-CCTAATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * * * *
59748307 TTTGTATAGCCTATTAGGCCCAAATCACC
1 TGTATATGGCCCATTAGGCCCAAATCACA
59748336 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
59748365 TTTATATGGCCCGTTAGACCCA
1 TGTATATGGCCCATTAGGCCCA
59748387 GTCATATTCA
Statistics
Matches: 62, Mismatches: 17, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
28 12 0.19
29 50 0.81
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:59752924 original size:13 final size:13
Alignment explanation
Indices: 59752908--59752933 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
59752898 ATAAAATGTT
59752908 GCCATAGATTTTG
1 GCCATAGATTTTG
59752921 GCCATAGATTTTG
1 GCCATAGATTTTG
59752934 CAGGCTCTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (13 bp):
GCCATAGATTTTG
Found at i:59753612 original size:47 final size:47
Alignment explanation
Indices: 59753558--59753651 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
59753548 CTAGATTTAA
59753558 CACCCATACCTCTATACATATGAAAACCCATAAACCTTAAGCATTTT
1 CACCCATACCTCTATACATATGAAAACCCATAAACCTTAAGCATTTT
59753605 CACCCATACCTCTATACATATGAAAACCCATAAACCTTAAGCATTTT
1 CACCCATACCTCTATACATATGAAAACCCATAAACCTTAAGCATTTT
59753652 GCCACCCACC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.38, C:0.30, G:0.04, T:0.28
Consensus pattern (47 bp):
CACCCATACCTCTATACATATGAAAACCCATAAACCTTAAGCATTTT
Found at i:59753635 original size:24 final size:24
Alignment explanation
Indices: 59753559--59753636 Score: 74
Period size: 24 Copynumber: 3.3 Consensus size: 24
59753549 TAGATTTAAC
59753559 ACCCATACCTCTATACATATGAAA
1 ACCCATACCTCTATACATATGAAA
***
59753583 ACCCATAAACCT-TA-AGCAT-T-TTC
1 ACCCAT--ACCTCTATA-CATATGAAA
59753606 ACCCATACCTCTATACATATGAAA
1 ACCCATACCTCTATACATATGAAA
59753630 ACCCATA
1 ACCCATA
59753637 AACCTTAAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
21 4 0.10
22 5 0.12
23 8 0.20
24 15 0.37
25 5 0.12
26 4 0.10
ACGTcount: A:0.40, C:0.31, G:0.04, T:0.26
Consensus pattern (24 bp):
ACCCATACCTCTATACATATGAAA
Found at i:59757946 original size:244 final size:244
Alignment explanation
Indices: 59757517--59758005 Score: 933
Period size: 244 Copynumber: 2.0 Consensus size: 244
59757507 GTTGGACCTC
*
59757517 ATTCAGAACCTAGAAGCATCCACAAAAATAAATAAATAAATAAATTACATCATTCTATGTTTAGT
1 ATTCAGAACCTAGAAGCATCCACAAAAATAAATAAATAAACAAATTACATCATTCTATGTTTAGT
59757582 TGCTTTAAAAATAAATAATATCTCAACCCTTCCTGTTAAAACAAAGTTCATGAGAAAATATTTTA
66 TGCTTTAAAAATAAATAATATCTCAACCCTTCCTGTTAAAACAAAGTTCATGAGAAAATATTTTA
59757647 TCCATGCACATTCAGTTCGCATCTGAACCCGTTATCTCAAGAGTTAATGCACAAAAACAAGAAAA
131 TCCATGCACATTCAGTTCGCATCTGAACCCGTTATCTCAAGAGTTAATGCACAAAAACAAGAAAA
59757712 AAGTTTGTTGCTTTTAACATTTGATGCATGGAAACCTGGATATTCTTTA
196 AAGTTTGTTGCTTTTAACATTTGATGCATGGAAACCTGGATATTCTTTA
*
59757761 ATTCAGAACCTAGAAGCATCCACAAAAATAAATAAATAAACAAATTACATCATTCTATGTTTTGT
1 ATTCAGAACCTAGAAGCATCCACAAAAATAAATAAATAAACAAATTACATCATTCTATGTTTAGT
*
59757826 TGCTTTAAAAATAAATGATATCTCAACCCTTCCTGTTAAAACAAAGTTCATGAGAAAATATTTTA
66 TGCTTTAAAAATAAATAATATCTCAACCCTTCCTGTTAAAACAAAGTTCATGAGAAAATATTTTA
*
59757891 TCCATGCACATTCAGTTCGCATCTGAACTCGTTATCTCAAGAGTTAATGCACAAAAACAAGAAAA
131 TCCATGCACATTCAGTTCGCATCTGAACCCGTTATCTCAAGAGTTAATGCACAAAAACAAGAAAA
*
59757956 AAGTTTGTTTCTTTTAACATTTGATGCATGGAAACCTGGATATTCTTTA
196 AAGTTTGTTGCTTTTAACATTTGATGCATGGAAACCTGGATATTCTTTA
59758005 A
1 A
59758006 AACTAGTACA
Statistics
Matches: 240, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
244 240 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.32
Consensus pattern (244 bp):
ATTCAGAACCTAGAAGCATCCACAAAAATAAATAAATAAACAAATTACATCATTCTATGTTTAGT
TGCTTTAAAAATAAATAATATCTCAACCCTTCCTGTTAAAACAAAGTTCATGAGAAAATATTTTA
TCCATGCACATTCAGTTCGCATCTGAACCCGTTATCTCAAGAGTTAATGCACAAAAACAAGAAAA
AAGTTTGTTGCTTTTAACATTTGATGCATGGAAACCTGGATATTCTTTA
Found at i:59761190 original size:30 final size:31
Alignment explanation
Indices: 59761150--59761215 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 31
59761140 GATGTAACTT
* *
59761150 ATTAAGCAAATGCCTCTAAAATAATAACAGA
1 ATTAAGCAAATACCTCTAAAATAATAACAAA
59761181 ATTAA-CAAATACCTCTAAAATAATAACAAA
1 ATTAAGCAAATACCTCTAAAATAATAACAAA
59761211 ATTAA
1 ATTAA
59761216 TAATAAAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
30 28 0.85
31 5 0.15
ACGTcount: A:0.56, C:0.15, G:0.05, T:0.24
Consensus pattern (31 bp):
ATTAAGCAAATACCTCTAAAATAATAACAAA
Found at i:59761589 original size:54 final size:54
Alignment explanation
Indices: 59761505--59761616 Score: 197
Period size: 54 Copynumber: 2.1 Consensus size: 54
59761495 CTATAAATAG
*
59761505 GTCTACTTAGGAACCAACACCAATATCTAGCCGCTGCCTTAACTTCATATTTTA
1 GTCTACTTAGGAACCAACACCAATAACTAGCCGCTGCCTTAACTTCATATTTTA
* *
59761559 GTCTATTTAGGAACCAACACCAATAACTAGCCGCTGCCTTAACTTCATGTTTTA
1 GTCTACTTAGGAACCAACACCAATAACTAGCCGCTGCCTTAACTTCATATTTTA
59761613 GTCT
1 GTCT
59761617 TTATGTGCAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (54 bp):
GTCTACTTAGGAACCAACACCAATAACTAGCCGCTGCCTTAACTTCATATTTTA
Found at i:59768558 original size:22 final size:21
Alignment explanation
Indices: 59768523--59768598 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
59768513 AAAAGGTATC
* *
59768523 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
59768544 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
59768567 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
59768586 TGC-AATCATATCT
1 TACAAATCATATCT
59768599 AAAATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:59768610 original size:35 final size:36
Alignment explanation
Indices: 59768559--59768684 Score: 184
Period size: 35 Copynumber: 3.5 Consensus size: 36
59768549 AATCATATCT
59768559 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGC-TATCATATCTAAGATTGCAATCATA
*
59768596 TCTAAAATTG-TATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCA-ATCATA
* *
59768632 TCTAAGATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
59768667 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
59768685 TGAAGATTAT
Statistics
Matches: 81, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
35 36 0.44
36 20 0.25
37 25 0.31
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
Found at i:59768692 original size:17 final size:19
Alignment explanation
Indices: 59768559--59768684 Score: 201
Period size: 19 Copynumber: 6.9 Consensus size: 19
59768549 AATCATATCT
59768559 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
59768578 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
59768596 TCTAAAATTG--TATCATA
1 TCTAAGATTGCATATCATA
59768613 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
59768632 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
59768650 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
59768667 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
59768685 TGAAGATTAT
Statistics
Matches: 99, Mismatches: 2, Indels: 12
0.88 0.02 0.11
Matches are distributed among these distances:
17 31 0.31
18 31 0.31
19 37 0.37
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:59768704 original size:54 final size:54
Alignment explanation
Indices: 59768559--59768684 Score: 243
Period size: 54 Copynumber: 2.3 Consensus size: 54
59768549 AATCATATCT
59768559 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAAATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAAATTGTATCATA
*
59768613 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAAATTGTATCATA
59768667 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
59768685 TGAAGATTAT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAAATTGTATCATA
Found at i:59769312 original size:43 final size:42
Alignment explanation
Indices: 59769265--59769346 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
59769255 CCTGTTGATA
**
59769265 TCTTCGATCTGCTCTCCGTCGAATACAGAGACGCCAAATCTTT
1 TCTTCGATCTGCTCTCCAAC-AATACAGAGACGCCAAATCTTT
* * * *
59769308 TCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCTCCAACAATACAGAGACGCCAAATC
59769347 ATCTTAGATT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 18 0.55
43 15 0.45
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (42 bp):
TCTTCGATCTGCTCTCCAACAATACAGAGACGCCAAATCTTT
Found at i:59769450 original size:260 final size:261
Alignment explanation
Indices: 59768970--59769451 Score: 743
Period size: 260 Copynumber: 1.9 Consensus size: 261
59768960 GTCCTCAATT
59768970 TGCTCATTGCAAACTCAAGACTGTCATGTTGATATCTTCGATCTGCTCTCCGTCGAACACAGAGA
1 TGCTCATTGCAAACTCAAGACTGTCATGTTGATATCTTCGATCTGCTCTCCGTCGAACACAGAGA
* *
59769035 TGCCAAATCTGCTTCTTCGATTTGTTTTCTAACAATACAAAGATGCCAAATCATCTTAGATCTAC
66 CGCCAAATCTGCTTCTTCGATTTGTTCTCTAACAATACAAAGATGCCAAATCATCTTAGATCTAC
* * * *
59769100 TTCAGCGTAAACACGTGAAAGCCAAATCTGCTGTGTATTCGATTTGCTCATTGTGAACACAAGGA
131 TTCAGCGTAAACACGCGAAAACCAAATCAGCTATGTATTCGATTTGCTCATTGTGAACACAAGGA
*
59769165 TGCCAAATCATCTTGGATCTGCTTCAGCAAAATCATCTGAAGGTCAGATCTACTATGTCTTTAAT
196 TGCCAAACCATCTTGGATCTGCTTCAGCAAAATCATCTGAAGGTCAGATCTACTATGTCTTTAAT
59769230 C
261 C
* * * * * *
59769231 TGCTTATTGTAAACTTATGACTGTCCTGTTGATATCTTCGATCTGCTCTCCGTCGAATACAGAGA
1 TGCTCATTGCAAACTCAAGACTGTCATGTTGATATCTTCGATCTGCTCTCCGTCGAACACAGAGA
* * * *
59769296 CGCCAAATCT-TTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGC
66 CGCCAAATCTGCTTCTTCGATTTGTTCTCTAACAATACAAAGATGCCAAATCATCTTAGATCTAC
** * * *
59769360 TTCAGCGTAAGTACGCGAAAACCAAATCAGCTATGTCTTTGATTTGTTCATTGT-AAGCACAAGG
131 TTCAGCGTAAACACGCGAAAACCAAATCAGCTATGTATTCGATTTGCTCATTGTGAA-CACAAGG
59769424 ATGCCAAACCATCTTGGATCTGCTTCAG
195 ATGCCAAACCATCTTGGATCTGCTTCAG
59769452 TCATCTGAAG
Statistics
Matches: 198, Mismatches: 22, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
259 2 0.01
260 128 0.65
261 68 0.34
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (261 bp):
TGCTCATTGCAAACTCAAGACTGTCATGTTGATATCTTCGATCTGCTCTCCGTCGAACACAGAGA
CGCCAAATCTGCTTCTTCGATTTGTTCTCTAACAATACAAAGATGCCAAATCATCTTAGATCTAC
TTCAGCGTAAACACGCGAAAACCAAATCAGCTATGTATTCGATTTGCTCATTGTGAACACAAGGA
TGCCAAACCATCTTGGATCTGCTTCAGCAAAATCATCTGAAGGTCAGATCTACTATGTCTTTAAT
C
Found at i:59769760 original size:205 final size:205
Alignment explanation
Indices: 59769309--59770011 Score: 1184
Period size: 205 Copynumber: 3.5 Consensus size: 205
59769299 CAAATCTTTT
* *
59769309 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGTAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * *
59769374 GCGAAAACCAAATCAGCTATGTCTTTGATTTGTTCATTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
59769439 GGATCTGCTTCAG--T---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCAAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
59769499 AGATGCCAGA
196 AGATGCCAGA
*
59769509 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * *
59769574 GTTAAAGCCAAATCAGTTATGTCTTCGACTTGTTCCTTGTAAGCACAATGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
59769639 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTTCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
59769704 AGATGCCAGA
196 AGATGCCAGA
*
59769714 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
59769779 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
59769844 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTAGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
59769909 AGATGCCAAA
196 AGATGCCAGA
* * * *
59769919 CTTCGATTTGTTCTCTGACAATAAAGAGATGCCAAATCATCTTAGATTTACTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
59769984 -TGAAAGCCAAATCAGCTATGTCTTCGAT
66 GTGAAAGCCAAATCAGCTATGTCTTCGAT
59770012 CTGCTCTCCG
Statistics
Matches: 471, Mismatches: 27, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
200 132 0.28
202 1 0.00
204 28 0.06
205 310 0.66
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
AGATGCCAGA
Found at i:59770124 original size:44 final size:44
Alignment explanation
Indices: 59770076--59770348 Score: 234
Period size: 44 Copynumber: 6.2 Consensus size: 44
59770066 ACAATATAGA
*
59770076 GATGCCAAATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGG
1 GATGCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGG
** * * * * *
59770120 GATGCC--ATGCTGAAATCCTCGATCTGCTTCGCTGTTAGCACA-G
1 GATGCCAAAT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGG
* * * * *
59770163 AAGTGTCAGATCTGTTATCTTCGATATGTTCCCTATAAACACAGG
1 GA-TGCCAAATCTGCTATCTTCGATCTGTTCCCTATAAACACAGG
* *
59770208 GATGCCAAATCTGCTATATTC-AACTTGTTCCCTATAAACACAGG
1 GATGCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGG
* ** * * *
59770252 GATGCCATA-CTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGG
1 GATGCCAAATCTGCTATCTTCGATCTG-TTCCCTATAAACACAGG
* * *
59770296 AATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGG
1 GATGCCAAATCTGCTATCTTCGATCTGTTCCCTATAAACACAGG
59770340 GATGCCAAA
1 GATGCCAAA
59770349 CCTTGTTTCT
Statistics
Matches: 174, Mismatches: 44, Indels: 22
0.73 0.18 0.09
Matches are distributed among these distances:
42 2 0.01
43 23 0.13
44 117 0.67
45 30 0.17
46 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (44 bp):
GATGCCAAATCTGCTATCTTCGATCTGTTCCCTATAAACACAGG
Found at i:59770212 original size:132 final size:132
Alignment explanation
Indices: 59770076--59770348 Score: 476
Period size: 132 Copynumber: 2.1 Consensus size: 132
59770066 ACAATATAGA
* *
59770076 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCCTCG
1 GATGCCAAATCTGCTATATTCAACTTGTTCCCTATAAACACAGGGATGCCATACTGAAATCCTCG
* *
59770141 ATCTGCTTCGCTGTTAGCACA-GAAGTGTCAGATCTGTTATCTTCGATATGTTCCCTATAAACAC
66 ATCTGCTTCGCTGTAAGCACAGGAA-TGTCAGATCTGCTATCTTCGATATGTTCCCTATAAACAC
59770205 AGG
130 AGG
*
59770208 GATGCCAAATCTGCTATATTCAACTTGTTCCCTATAAACACAGGGATGCCATACTGAAATCTTCG
1 GATGCCAAATCTGCTATATTCAACTTGTTCCCTATAAACACAGGGATGCCATACTGAAATCCTCG
*
59770273 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACA
66 ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATATGTTCCCTATAAACACA
59770338 GG
131 GG
59770340 GATGCCAAA
1 GATGCCAAA
59770349 CCTTGTTTCT
Statistics
Matches: 134, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
132 131 0.98
133 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (132 bp):
GATGCCAAATCTGCTATATTCAACTTGTTCCCTATAAACACAGGGATGCCATACTGAAATCCTCG
ATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATATGTTCCCTATAAACACA
GG
Found at i:59771269 original size:9 final size:9
Alignment explanation
Indices: 59771255--59771294 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
59771245 TTTCTTTTTC
59771255 TTTTTCTTT
1 TTTTTCTTT
*
59771264 TTTTTC-TC
1 TTTTTCTTT
59771272 TTTTTCTTT
1 TTTTTCTTT
59771281 TTTTTCTTT
1 TTTTTCTTT
59771290 TTTTT
1 TTTTT
59771295 TAAATAGAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 7 0.25
9 21 0.75
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:59771277 original size:23 final size:23
Alignment explanation
Indices: 59771243--59771293 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
59771233 GGCCTCTTCA
59771243 TTTTTCTTTTTCTTTTTCTT-TT
1 TTTTTCTTTTTCTTTTTCTTCTT
*
59771265 TTTTCTCTTTTTCTTTTTTTTCTT
1 TTTT-TCTTTTTCTTTTTCTTCTT
59771289 TTTTT
1 TTTTT
59771294 TTAAATAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 4 0.15
23 16 0.62
24 6 0.23
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (23 bp):
TTTTTCTTTTTCTTTTTCTTCTT
Found at i:59771291 original size:6 final size:6
Alignment explanation
Indices: 59771243--59771282 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
59771233 GGCCTCTTCA
*
59771243 TTTTTC TTTTTC TTTTTC TTTTT- TTTCTC TTTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
59771283 TTTCTTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:59771293 original size:17 final size:17
Alignment explanation
Indices: 59771243--59771292 Score: 75
Period size: 17 Copynumber: 2.9 Consensus size: 17
59771233 GGCCTCTTCA
*
59771243 TTTTTCTTTTTCTTTTTC
1 TTTTT-TTTCTCTTTTTC
59771261 TTTTTTTTCTCTTTTTC
1 TTTTTTTTCTCTTTTTC
59771278 TTTTTTTTCT-TTTTT
1 TTTTTTTTCTCTTTTT
59771293 TTTAAATAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 5 0.16
17 21 0.68
18 5 0.16
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (17 bp):
TTTTTTTTCTCTTTTTC
Found at i:59776917 original size:22 final size:21
Alignment explanation
Indices: 59776882--59776957 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
59776872 AAAAGGTATC
* *
59776882 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
59776903 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
59776926 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
59776945 TGC-AATCATATCT
1 TACAAATCATATCT
59776958 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:59776974 original size:35 final size:37
Alignment explanation
Indices: 59776911--59776989 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
59776901 ATTACAAAAT
59776911 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
59776947 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
59776982 CATATCAT
1 CATATCAT
59776990 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:59776987 original size:14 final size:15
Alignment explanation
Indices: 59776932--59776987 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
59776922 AGATTGCATA
59776932 TCATATCTAAGATTG
1 TCATATCTAAGATTG
59776947 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
59776965 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
59776982 -CATATC
1 TCATATC
59776988 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:59776997 original size:17 final size:19
Alignment explanation
Indices: 59776918--59776989 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
59776908 AATCATATCT
59776918 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
59776937 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
59776955 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
59776972 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
59776990 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:59779562 original size:27 final size:27
Alignment explanation
Indices: 59779532--59779584 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
59779522 AATCAAAATT
*
59779532 AAATATATTTAATTTTATC-TTATTTTA
1 AAATATAATTAATTTT-TCATTATTTTA
*
59779559 AAATGTAATTAATTTTTCATTATTTT
1 AAATATAATTAATTTTTCATTATTTT
59779585 GTAATTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 2 0.09
27 21 0.91
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (27 bp):
AAATATAATTAATTTTTCATTATTTTA
Found at i:59779739 original size:56 final size:56
Alignment explanation
Indices: 59779673--59779782 Score: 184
Period size: 56 Copynumber: 2.0 Consensus size: 56
59779663 CTTTTGAAAC
* * *
59779673 ATTGCTATGAGTAGTATTGGTTGCATCATTGCGATAAAACTAAGATAAACACAACA
1 ATTGCTATGAGCAGTATTGGTTGCATCATTACGATAAAACAAAGATAAACACAACA
*
59779729 ATTGCTATGAGCAGTATTGGTTGTATCATTACGATAAAACAAAGATAAACACAA
1 ATTGCTATGAGCAGTATTGGTTGCATCATTACGATAAAACAAAGATAAACACAA
59779783 TAAATTATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (56 bp):
ATTGCTATGAGCAGTATTGGTTGCATCATTACGATAAAACAAAGATAAACACAACA
Found at i:59784416 original size:21 final size:21
Alignment explanation
Indices: 59784368--59784419 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
59784358 TTTAATGACC
*
59784368 TATGTGTGAACATCTATATGT
1 TATGTGTGAACATCTATATGG
*
59784389 TAAGTGTGAACATGCT-TATGG
1 TATGTGTGAACAT-CTATATGG
*
59784410 TGTGTGTGAA
1 TATGTGTGAA
59784420 TACAATAGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.27, C:0.08, G:0.27, T:0.38
Consensus pattern (21 bp):
TATGTGTGAACATCTATATGG
Found at i:59788851 original size:15 final size:14
Alignment explanation
Indices: 59788831--59788878 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 14
59788821 TTTTAATCCC
59788831 TAAAACTCTAAATCT
1 TAAAACT-TAAATCT
59788846 TAAAACTTAAATCCT
1 TAAAACTTAAAT-CT
*
59788861 AATAAACCTTAAATCT
1 --TAAAACTTAAATCT
59788877 TA
1 TA
59788879 TTTTATCATA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 7 0.24
15 9 0.31
16 2 0.07
17 11 0.38
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (14 bp):
TAAAACTTAAATCT
Found at i:59790546 original size:13 final size:13
Alignment explanation
Indices: 59790530--59790554 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59790520 AGTTATTACT
59790530 TTATTTATTTTAG
1 TTATTTATTTTAG
59790543 TTATTTATTTTA
1 TTATTTATTTTA
59790555 ATTGTTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
TTATTTATTTTAG
Found at i:59794235 original size:78 final size:78
Alignment explanation
Indices: 59794092--59794240 Score: 214
Period size: 79 Copynumber: 1.9 Consensus size: 78
59794082 CTCAAAATAT
* *
59794092 GTATAAATTTAAAGATGTTCTTTTTAGCGTAGTTGTCATACTTATAAAACCAACTAGTTACTTAA
1 GTATAAATTTAAAGATGTTCTTTTTAGCGTAGTTATCATACTTATAAAACCAACTAATTACTTAA
59794157 AAAAAAAAAGTAA
66 AAAAAAAAAGTAA
* *
59794170 GTATAAATTTAGAGATGTTCTTTTTTAGC-TGAGTTATCATATTTATAATAA-CAACTAATTA-T
1 GTATAAATTTAAAGATGTTC-TTTTTAGCGT-AGTTATCATACTTATAA-AACCAACTAATTACT
59794232 TAAAAAAAA
63 TAAAAAAAA
59794241 TTTATTATAA
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
78 30 0.47
79 32 0.50
80 2 0.03
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.38
Consensus pattern (78 bp):
GTATAAATTTAAAGATGTTCTTTTTAGCGTAGTTATCATACTTATAAAACCAACTAATTACTTAA
AAAAAAAAAGTAA
Found at i:59796284 original size:32 final size:31
Alignment explanation
Indices: 59796239--59796317 Score: 140
Period size: 32 Copynumber: 2.5 Consensus size: 31
59796229 CAAGTTCAGA
59796239 TACTTTTGGACAAGTTTTGATACTAAATAGG
1 TACTTTTGGACAAGTTTTGATACTAAATAGG
*
59796270 TACTTTTTGAACAAGTTTTGATACTAAATAGG
1 TAC-TTTTGGACAAGTTTTGATACTAAATAGG
59796302 TACTTTTGGACAAGTT
1 TACTTTTGGACAAGTT
59796318 CAAAGGGTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
31 15 0.33
32 30 0.67
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.41
Consensus pattern (31 bp):
TACTTTTGGACAAGTTTTGATACTAAATAGG
Found at i:59798124 original size:17 final size:16
Alignment explanation
Indices: 59798082--59798124 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
59798072 TTTTGTATCT
*
59798082 TAAATTTAATTTTTAG
1 TAAATTTAATTTATAG
*
59798098 TAATTATTAATTGTATAG
1 TAAAT-TTAATT-TATAG
59798116 TAAATTTAA
1 TAAATTTAA
59798125 ATAATTTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 4 0.18
17 10 0.45
18 8 0.36
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (16 bp):
TAAATTTAATTTATAG
Found at i:59799915 original size:20 final size:22
Alignment explanation
Indices: 59799892--59799936 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
59799882 ATATATTCTA
59799892 ATAT-TTAAA-AATATTAAAAT
1 ATATATTAAATAATATTAAAAT
* *
59799912 ATATATTAAATAATTTTTAAAT
1 ATATATTAAATAATATTAAAAT
59799934 ATA
1 ATA
59799937 AATAATTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 5 0.24
22 12 0.57
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
ATATATTAAATAATATTAAAAT
Found at i:59799955 original size:20 final size:18
Alignment explanation
Indices: 59799912--59799958 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 18
59799902 ATATTAAAAT
59799912 ATATATTAAATAATTTTTA
1 ATATA-TAAATAATTTTTA
59799931 A-ATATAAATAATTTATTA
1 ATATATAAATAATTT-TTA
59799949 ATTATATAAA
1 A-TATATAAA
59799959 ATACTAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 10 0.40
18 7 0.28
19 1 0.04
20 7 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATATAAATAATTTTTA
Found at i:59800816 original size:91 final size:90
Alignment explanation
Indices: 59800673--59800946 Score: 309
Period size: 91 Copynumber: 3.0 Consensus size: 90
59800663 TTGGTACATG
* * * * * *
59800673 TACTTTTATAAAATGT-TCAATGTGGTATTTGTACTTTAAAAAAGTCTAATGTGATACTTGAACT
1 TACTTTCATAAAATGTCT-AATGTGGTACTTGTATTTTAAAATA-TCCAATGTGGTACTTGAACT
59800737 ATCAAATTGTGTATTATTTGGTATCTA
64 ATCAAATTGTGTATTATTTGGTATCTA
59800764 TACTTTCATAAAATGTCTAATGTGGTACTTGTAGTTTTAAAATATCCAATGTGGTACTTGAACTA
1 TACTTTCATAAAATGTCTAATGTGGTACTTGTA-TTTTAAAATATCCAATGTGGTACTTGAACTA
* * *
59800829 TCAATTTGTGTATTGTTTGGTACCTA
65 TCAAATTGTGTATTATTTGGTATCTA
* * * * * * * *
59800855 TACTTTCATAAAATATCCAATGTGATACTTATACTTTGAAAATATTCAATGTGGCACCTGAACTA
1 TACTTTCATAAAATGTCTAATGTGGTACTTGTA-TTTTAAAATATCCAATGTGGTACTTGAACTA
* *
59800920 TCAAGA-TGTATATTATTATAGTATCTA
65 TCAA-ATTGTGTATTATT-TGGTATCTA
59800947 GAGTTAACAC
Statistics
Matches: 156, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
91 140 0.90
92 16 0.10
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.42
Consensus pattern (90 bp):
TACTTTCATAAAATGTCTAATGTGGTACTTGTATTTTAAAATATCCAATGTGGTACTTGAACTAT
CAAATTGTGTATTATTTGGTATCTA
Found at i:59801406 original size:69 final size:69
Alignment explanation
Indices: 59801327--59801464 Score: 276
Period size: 69 Copynumber: 2.0 Consensus size: 69
59801317 TCAGTGAAGG
59801327 CTTAACATATTATCAGAGGAGACCTAATACTTTGGCCATGTACTTAAAAGAAAATTCTTTTATAC
1 CTTAACATATTATCAGAGGAGACCTAATACTTTGGCCATGTACTTAAAAGAAAATTCTTTTATAC
59801392 ACTA
66 ACTA
59801396 CTTAACATATTATCAGAGGAGACCTAATACTTTGGCCATGTACTTAAAAGAAAATTCTTTTATAC
1 CTTAACATATTATCAGAGGAGACCTAATACTTTGGCCATGTACTTAAAAGAAAATTCTTTTATAC
59801461 ACTA
66 ACTA
59801465 AACAAATATC
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (69 bp):
CTTAACATATTATCAGAGGAGACCTAATACTTTGGCCATGTACTTAAAAGAAAATTCTTTTATAC
ACTA
Found at i:59808141 original size:30 final size:30
Alignment explanation
Indices: 59808054--59808128 Score: 150
Period size: 30 Copynumber: 2.5 Consensus size: 30
59808044 CATGGCCATG
59808054 ACACACGGGCGTGTGGTCTACCTGTGTGTC
1 ACACACGGGCGTGTGGTCTACCTGTGTGTC
59808084 ACACACGGGCGTGTGGTCTACCTGTGTGTC
1 ACACACGGGCGTGTGGTCTACCTGTGTGTC
59808114 ACACACGGGCGTGTG
1 ACACACGGGCGTGTG
59808129 AATCACCCGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.15, C:0.27, G:0.35, T:0.24
Consensus pattern (30 bp):
ACACACGGGCGTGTGGTCTACCTGTGTGTC
Found at i:59808689 original size:12 final size:13
Alignment explanation
Indices: 59808664--59808692 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
59808654 TGTGATGTGC
59808664 ATATATGTATTGA
1 ATATATGTATTGA
59808677 ATATATG-ATTGA
1 ATATATGTATTGA
59808689 ATAT
1 ATAT
59808693 TCCTTATGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (13 bp):
ATATATGTATTGA
Found at i:59809819 original size:54 final size:54
Alignment explanation
Indices: 59809751--59809858 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
59809741 AATATTGAGA
**
59809751 TACGGGCGAGGCTCGGACGGTATTGGGTGTGTTTGTTTTCATATTTGGCTTCAT
1 TACGGGCGAGGCTCGGACGGTATTAAGTGTGTTTGTTTTCATATTTGGCTTCAT
* *
59809805 TACGGGTGAGGCTCGGATGGTATTAAGTGTGTTTGTTTTCATATTTGGCTTCAT
1 TACGGGCGAGGCTCGGACGGTATTAAGTGTGTTTGTTTTCATATTTGGCTTCAT
59809859 CTTTCTTGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.15, C:0.13, G:0.31, T:0.41
Consensus pattern (54 bp):
TACGGGCGAGGCTCGGACGGTATTAAGTGTGTTTGTTTTCATATTTGGCTTCAT
Found at i:59811153 original size:27 final size:26
Alignment explanation
Indices: 59811090--59811205 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 26
59811080 CAGCATCGCT
* * *
59811090 ACCAGAACAGATAATATGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
*
59811116 ACTAGATACAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
59811144 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* * *
59811171 ACCAGATCAGATATTTGTGGCATAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
59811198 ACCAGAAC
1 ACCAGAAC
59811206 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.74
28 15 0.19
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:59811154 original size:54 final size:54
Alignment explanation
Indices: 59811090--59811205 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 54
59811080 CAGCATCGCT
* *
59811090 ACCAGAACAGATA-ATATGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCC
1 ACCAGAACAGATATATATGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCC
* * * * *
59811144 ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCC
1 ACCAGAACAGATATATATGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
59811198 ACCAGAAC
1 ACCAGAAC
59811206 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 38 0.70
55 16 0.30
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (54 bp):
ACCAGAACAGATATATATGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
Found at i:59812844 original size:26 final size:26
Alignment explanation
Indices: 59812815--59812898 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
59812805 CATGAAATTC
*
59812815 TTATAATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
59812841 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
59812867 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
59812893 TTATCA
1 TTATCA
59812899 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:59814589 original size:19 final size:19
Alignment explanation
Indices: 59814565--59814643 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
59814555 AATCTTTAAG
59814565 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
59814584 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
59814603 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
59814620 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
59814641 GAT
1 GAT
59814644 CTTGTAATAT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:59814595 original size:36 final size:36
Alignment explanation
Indices: 59814555--59814642 Score: 119
Period size: 36 Copynumber: 2.4 Consensus size: 36
59814545 ATGGAAATAT
59814555 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGACAATCTTAGATATGATATGC
59814591 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG--ACAATCTTAGATATGATATGC
*
59814627 AATCTTGAAGATATGA
1 AATCTTTAAGATATGA
59814643 TCTTGTAATA
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 29 0.63
37 1 0.02
38 7 0.15
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (36 bp):
AATCTTTAAGATATGACAATCTTAGATATGATATGC
Found at i:59821882 original size:21 final size:21
Alignment explanation
Indices: 59821852--59821891 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
59821842 ATTAATAATA
59821852 ATACTAATAT-TACATAAAGGT
1 ATACTAATATATAC-TAAAGGT
*
59821873 ATACTTATATATACTAAAG
1 ATACTAATATATACTAAAG
59821892 TTATGTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.35
Consensus pattern (21 bp):
ATACTAATATATACTAAAGGT
Found at i:59821964 original size:3 final size:3
Alignment explanation
Indices: 59821950--59822073 Score: 94
Period size: 3 Copynumber: 40.7 Consensus size: 3
59821940 TACATAACAT
*
59821950 ATA ATA AAA ATA ATA AT- ATA CATA AT- ATA TATAA ATA CATA TATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA -AT-A ATA -ATA -ATA
* * *
59821995 ACA A-A ACA TATA CTA -TA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
** **
59822039 ATA AGG ATA ATA ATA AGG ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
59822074 GTAAAAAAAA
Statistics
Matches: 98, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
2 8 0.08
3 74 0.76
4 15 0.15
5 1 0.01
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:59821993 original size:14 final size:14
Alignment explanation
Indices: 59821946--59822012 Score: 52
Period size: 14 Copynumber: 4.9 Consensus size: 14
59821936 CATATACATA
*
59821946 ACATATAATAAAAAT
1 ACATAT-ATATAAAT
*
59821961 A-ATA-ATATACAT
1 ACATATATATAAAT
59821973 A-ATATATATAAAT
1 ACATATATATAAAT
*
59821986 ACATATATA-ACAAA
1 ACATATATATA-AAT
59822000 ACATATACTATAA
1 ACATATA-TATAA
59822013 TAATAATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
12 10 0.23
13 9 0.21
14 19 0.44
15 4 0.09
16 1 0.02
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (14 bp):
ACATATATATAAAT
Found at i:59823897 original size:89 final size:89
Alignment explanation
Indices: 59823743--59823966 Score: 222
Period size: 89 Copynumber: 2.5 Consensus size: 89
59823733 GTGATCCTGA
* * * * * *
59823743 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAACAG-ACATTTAGAAACAGAAATTG
1 GCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAACATTAAAAAACAGAAATTG
* * * *
59823807 AAAATAGCTC-AGCACGTGAGCTAAG
65 AAAATACCTCGA-CACGTAACCCAAG
* *
59823832 GCTCAACTCACTTCTCGCAATATGAGCTGATTTTTGAAAACAGAAC-TTGAAAAAACA-AATTTT
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAACATT-AAAAAACAGAA-ATT
* *
59823895 GAAAATACCTCGACATGTAACCCGAG
64 GAAAATACCTCGACACGTAACCCAAG
* * *
59823921 GCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAAACAGAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAA
59823967 GTTAAAAGGC
Statistics
Matches: 112, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
88 15 0.13
89 87 0.78
90 10 0.09
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.26
Consensus pattern (89 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAACATTAAAAAACAGAAATTGA
AAATACCTCGACACGTAACCCAAG
Found at i:59823986 original size:54 final size:54
Alignment explanation
Indices: 59823919--59824301 Score: 658
Period size: 54 Copynumber: 7.1 Consensus size: 54
59823909 ATGTAACCCG
* * *
59823919 AGGCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAAACAGAAGTTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
* *
59823973 AGGCTCAATTCACCTCTCGCAATATGAGTTGATCTTTTGAAAAACAAAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTGAAAAACAGAAATTAAA
*
59824028 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
*
59824082 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
* *
59824136 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAAGTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
59824190 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
* *
59824244 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAGAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
59824298 AGGC
1 AGGC
59824302 GGAATTTGAA
Statistics
Matches: 311, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
54 261 0.84
55 50 0.16
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (54 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
Found at i:59824388 original size:14 final size:14
Alignment explanation
Indices: 59824369--59824402 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
59824359 TTGATTTTCC
59824369 TGAAAAGCA-AAATT
1 TGAAAAGCAGAAA-T
59824383 TGAAAAGCAGAAAT
1 TGAAAAGCAGAAAT
59824397 TGAAAA
1 TGAAAA
59824403 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.84
15 3 0.16
ACGTcount: A:0.59, C:0.06, G:0.18, T:0.18
Consensus pattern (14 bp):
TGAAAAGCAGAAAT
Found at i:59824439 original size:91 final size:87
Alignment explanation
Indices: 59824244--59824476 Score: 328
Period size: 91 Copynumber: 2.6 Consensus size: 87
59824234 AGAAATTAAA
* * *
59824244 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAGAAACAGAAATTAAAAGGCGGAATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAGAAACAGAAATTAAAAGGCAGAAATT
*
59824309 GAAAATACCTCAGCATGTCCTG
66 GAAAATACCTCAGCATGACCTG
59824331 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCCTGA-AAAGCA-AAATTTGAAAA-GCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT--TGAGAAA-CAGAAA-TT-AAAAGGCAG
*
59824393 AAATTGAAAATACCTCAGCGTGCGACCTG
61 AAATTGAAAATACCTCAGCAT--GACCTG
*
59824422 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAGAAACAGAAATTAAAA
59824477 ATACCTCAGC
Statistics
Matches: 132, Mismatches: 5, Indels: 17
0.86 0.03 0.11
Matches are distributed among these distances:
87 35 0.27
88 10 0.08
89 36 0.27
90 10 0.08
91 41 0.31
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAGAAACAGAAATTAAAAGGCAGAAATT
GAAAATACCTCAGCATGACCTG
Found at i:59824527 original size:73 final size:74
Alignment explanation
Indices: 59824381--59824544 Score: 267
Period size: 73 Copynumber: 2.2 Consensus size: 74
59824371 AAAAGCAAAA
* * * *
59824381 TTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCGACCTGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAATTAAAAATACCTCAGCGTGC-ACCCGAGGCTCAACTCACCTCTCGCAACA
59824446 TGAGTTGATT
65 TGAGTTGATT
59824456 TTTGAAAAACAGAAATTAAAAATACCTCAGCGTGC-CCCGAGGCTCAACTCACCTCTCGCAACAT
1 TTTGAAAAACAGAAATTAAAAATACCTCAGCGTGCACCCGAGGCTCAACTCACCTCTCGCAACAT
59824520 GAGTTGATT
66 GAGTTGATT
59824529 TTTGAAACAACAGAAA
1 TTTGAAA-AACAGAAA
59824545 CTGAAAAACG
Statistics
Matches: 84, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
73 43 0.51
74 8 0.10
75 33 0.39
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (74 bp):
TTTGAAAAACAGAAATTAAAAATACCTCAGCGTGCACCCGAGGCTCAACTCACCTCTCGCAACAT
GAGTTGATT
Found at i:59824596 original size:252 final size:250
Alignment explanation
Indices: 59824244--59824787 Score: 679
Period size: 252 Copynumber: 2.1 Consensus size: 250
59824234 AGAAATTAAA
* * * * *
59824244 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAGAAACAGAAATTAAAAGGCGGAATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATGAAAAGACGGAAATT
* * *
59824309 GAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCCTGAAA
66 GAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTT--TGAAA
* *
59824374 AGCA-AAATTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCGA-CCTGAGGCTCAACTCACCT
129 AGCATAAA-TT--AAA-CAGAAATTAAAAATACCTCAGCATGCGAGCC-GAGGCTCAACTCACCT
*
59824437 CTCGCAATATGAGTTGA-TTTT-TGAA-AAACA-GAAATTAAAAATACCTCAGCGTGCCCCG
189 CTCGCAATATGAGTTGATTTTTATAAATAAACAGGAAATTAAAAATACCTCAGCGTGCCCCG
*
59824495 AGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAACAGAAACTGAAAA-ACGGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-AACAGAAA-TGAAAAGACGGAAA
* * *
59824559 TTGAAAATACCTCAGCGTGCCCCGAGGCTCTACTCACCTTTCGCAATATGAGTTGACTTTTGAAA
64 TTGAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTGAAA
* * * * * *
59824624 AGTATAAATTAAACAGGAATTAAAAATTCCTCAGCATGTGAGCCGAGGCTCAACTCATCTCTCGT
129 AGCATAAATTAAACAGAAATTAAAAATACCTCAGCATGCGAGCCGAGGCTCAACTCACCTCTCGC
* * *
59824689 AATATGAGTTGATTTTTAAAAAAATAAATTAAATAGGAATTTAAAAATACCTCAGCGTGTCCCG
194 AATATGAGTTGATTTTT------ATAAA-TAAACAGGAAATTAAAAATACCTCAGCGTGCCCCG
59824753 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
59824788 AAAAATAGAA
Statistics
Matches: 253, Mismatches: 25, Indels: 23
0.84 0.08 0.08
Matches are distributed among these distances:
247 54 0.21
248 9 0.04
250 10 0.04
251 41 0.16
252 67 0.26
253 5 0.02
255 3 0.01
257 4 0.02
258 60 0.24
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.26
Consensus pattern (250 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATGAAAAGACGGAAATT
GAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTGAAAAG
CATAAATTAAACAGAAATTAAAAATACCTCAGCATGCGAGCCGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTATAAATAAACAGGAAATTAAAAATACCTCAGCGTGCCCCG
Done.