Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 203 of 250
Found at i:63249898 original size:6 final size:6
Alignment explanation
Indices: 63249880--63249918 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
63249870 TCGTTCTATC
* *
63249880 TTTTTA TTCTTA TTTTTA TTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
63249919 CAATTTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:63252868 original size:13 final size:13
Alignment explanation
Indices: 63252852--63252884 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
63252842 TTTAATTAAA
*
63252852 TTAGTTAATTAGT
1 TTAGATAATTAGT
63252865 TTAGATAATTAGT
1 TTAGATAATTAGT
63252878 TTA-ATAA
1 TTAGATAA
63252885 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:63257216 original size:20 final size:20
Alignment explanation
Indices: 63257184--63257221 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
63257174 TGTTTCACAT
63257184 TCATATAACTAATATTTATG
1 TCATATAACTAATATTTATG
*
63257204 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
63257222 ACTTAATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATG
Found at i:63258875 original size:17 final size:18
Alignment explanation
Indices: 63258853--63258887 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
63258843 ATACCATACA
*
63258853 TTTTTCAC-CATTTATTT
1 TTTTTCACACAATTATTT
63258870 TTTTTCACACAATTATTT
1 TTTTTCACACAATTATTT
63258888 AATAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTTCACACAATTATTT
Found at i:63261258 original size:16 final size:16
Alignment explanation
Indices: 63261233--63261301 Score: 120
Period size: 16 Copynumber: 4.3 Consensus size: 16
63261223 TTGGTTCGCT
*
63261233 GTAATAGAATAGAGGC
1 GTAATGGAATAGAGGC
63261249 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
*
63261265 GTAATGGAATAGATGC
1 GTAATGGAATAGAGGC
63261281 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
63261297 GTAAT
1 GTAAT
63261302 AGGTAATTCT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.39, C:0.06, G:0.33, T:0.22
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:63261370 original size:44 final size:46
Alignment explanation
Indices: 63261281--63261371 Score: 150
Period size: 46 Copynumber: 2.0 Consensus size: 46
63261271 GAATAGATGC
* *
63261281 GTAATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTGAAT
63261327 GTAATGGAATAGAGGCGTAAT-GAT-ATTCTTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTGAAT
63261371 G
1 G
63261372 GAATAGAGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 20 0.47
45 2 0.05
46 21 0.49
ACGTcount: A:0.27, C:0.04, G:0.30, T:0.38
Consensus pattern (46 bp):
GTAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTGAAT
Found at i:63261372 original size:39 final size:44
Alignment explanation
Indices: 63261281--63261387 Score: 134
Period size: 46 Copynumber: 2.5 Consensus size: 44
63261271 GAATAGATGC
* *
63261281 GTAATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTT--AT
63261327 GTAATGGAATAGAGGCGTAAT-GAT-ATTCTTGTGTTTGG-T-T
1 GTAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTAT
*
63261367 G-AATGGAATAGAGGTGTAATA
1 GTAATGGAATAGAGGCGTAATA
63261388 ACATAAGGAA
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
39 18 0.32
40 2 0.04
43 1 0.02
44 13 0.23
45 2 0.04
46 21 0.37
ACGTcount: A:0.30, C:0.04, G:0.30, T:0.36
Consensus pattern (44 bp):
GTAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTAT
Found at i:63261540 original size:16 final size:15
Alignment explanation
Indices: 63261530--63261685 Score: 61
Period size: 17 Copynumber: 10.5 Consensus size: 15
63261520 CATAATTGTT
63261530 ATAAAATATAATTTA
1 ATAAAATATAATTTA
63261545 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
63261562 ATAAAAT-T--TTTA
1 ATAAAATATAATTTA
63261574 AT-AAATAT--TCTT-
1 ATAAAATATAAT-TTA
* * *
63261586 ATATGAAT-TTA-CTA
1 ATA-AAATATAATTTA
63261600 ATAAAATCATAATATATGA
1 ATAAAAT-ATAAT-T-T-A
63261619 TACTAAAATATAATTTA
1 -A-TAAAATATAATTTA
63261636 A-AATAAT-T-A-TT-
1 ATAA-AATATAATTTA
*
63261647 ATTAAATATAATTTA
1 ATAAAATATAATTTA
63261662 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
63261679 ATAAAAT
1 ATAAAAT
63261686 TGTTAATAAA
Statistics
Matches: 109, Mismatches: 7, Indels: 50
0.66 0.04 0.30
Matches are distributed among these distances:
11 8 0.07
12 14 0.13
13 9 0.08
14 12 0.11
15 13 0.12
16 12 0.11
17 25 0.23
18 2 0.02
19 2 0.02
20 6 0.06
21 6 0.06
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (15 bp):
ATAAAATATAATTTA
Found at i:63261575 original size:17 final size:17
Alignment explanation
Indices: 63261535--63261568 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63261525 TTGTTATAAA
63261535 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
63261552 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
63261569 TTTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:63261692 original size:17 final size:17
Alignment explanation
Indices: 63261652--63261685 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63261642 TTATTATTAA
63261652 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
63261669 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
63261686 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:63261721 original size:117 final size:117
Alignment explanation
Indices: 63261515--63262004 Score: 795
Period size: 117 Copynumber: 4.3 Consensus size: 117
63261505 TTAATCATAT
* * * *
63261515 TTTAACATAATTGTTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTTTTAATAAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
*
63261580 ATTCTTATATGAATTTACTAATAAAATCATAATATATGATACTAAAATATAA
66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
63261632 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
63261697 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
* * *
63261749 TTTAACATAATTGTTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
63261814 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
*
63261866 TTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTAATAAAA---TT-CT---
1 TTTAAAATAATTATTATTAAATATAATTTAATAA-AATATATAATTTAATAAAATTGTTAATAAA
63261924 TATTCTTATATGAATTTAC---TAAAATCATAATATATAATACTATAAAATATAA
65 TATTCTTATATGAATTTACTAATAAAATCATAATATATAATAC--TAAAATATAA
63261976 TTT-AAATAATTATTATTAAATATAATTTA
1 TTTAAAATAATTATTATTAAATATAATTTA
63262005 TAATCTACTT
Statistics
Matches: 358, Mismatches: 12, Indels: 14
0.93 0.03 0.04
Matches are distributed among these distances:
108 21 0.06
109 26 0.07
110 13 0.04
111 19 0.05
114 1 0.00
115 2 0.01
117 257 0.72
118 19 0.05
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (117 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
Found at i:63261784 original size:15 final size:15
Alignment explanation
Indices: 63261764--63261802 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 15
63261754 CATAATTGTT
63261764 ATAAAATATAATTTA
1 ATAAAATATAATTTA
63261779 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
63261796 ATAAAAT
1 ATAAAAT
63261803 TGTTAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.18
16 6 0.27
17 12 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAAATATAATTTA
Found at i:63261809 original size:17 final size:17
Alignment explanation
Indices: 63261769--63261802 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63261759 TTGTTATAAA
63261769 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
63261786 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
63261803 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:63261874 original size:20 final size:21
Alignment explanation
Indices: 63261835--63261874 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
63261825 AATTTACTAA
*
63261835 TAAAATCATAATATATAATAC
1 TAAAATCATAATATAAAATAC
*
63261856 TAAAAT-ATAATTTAAAATA
1 TAAAATCATAATATAAAATA
63261875 ATTATTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATCATAATATAAAATAC
Found at i:63261887 original size:26 final size:28
Alignment explanation
Indices: 63261842--63261921 Score: 92
Period size: 28 Copynumber: 2.8 Consensus size: 28
63261832 TAATAAAATC
63261842 ATAATATATAATACTAAAATATAATTTAA-A
1 ATAATATATAAT--T-AAATATAATTTAATA
*
63261872 ATAAT-TATTATTAAATATAATTTAATA
1 ATAATATATAATTAAATATAATTTAATA
* *
63261899 ATAATATATAATTTAATAAAATT
1 ATAATATATAATTAAATATAATT
63261922 CTTATTCTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
26 13 0.30
27 7 0.16
28 14 0.32
29 5 0.11
30 5 0.11
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (28 bp):
ATAATATATAATTAAATATAATTTAATA
Found at i:63261954 original size:44 final size:41
Alignment explanation
Indices: 63261619--63261954 Score: 137
Period size: 43 Copynumber: 8.3 Consensus size: 41
63261609 TAATATATGA
63261619 TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
1 TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
* * *
63261660 TAATAAAATATATAATTTAATAA-AATTGTTAATAAATAT--TCT
1 TACT-AAA-ATATAATTTAA-AATAATTATTATTAAATATAAT-T
* * * *
63261702 TA-T---AT-GAATTTACTAATAA-AATCA-TAATATATAA--
1 TACTAAAATATAATTTA-AAATAATTATTATTAA-ATATAATT
* * *
63261736 TACTAAAATATAATTTAACATAATTGTTATAAAATATAATT
1 TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
* * *
63261777 TAATAAAATATATAATTTAATAA-AATTGTTAATAAATAT--TCT
1 TACT-AAA-ATATAATTTAA-AATAATTATTATTAAATATAAT-T
* * * *
63261819 TA-T---AT-GAATTTACTAATAA-AATCA-TAATATATAA--
1 TACTAAAATATAATTTA-AAATAATTATTATTAA-ATATAATT
63261853 TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
1 TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
* * **
63261894 TAATAATAATATATAATTTAATAA-AATTCTTATTCTTATATGAATT
1 TACT-A-AA-ATATAATTTAA-AATAATTATTATT-AAATAT-AATT
63261940 TACTAAAATCATAAT
1 TACTAAAAT-ATAAT
63261955 ATATAATACT
Statistics
Matches: 219, Mismatches: 33, Indels: 83
0.65 0.10 0.25
Matches are distributed among these distances:
34 10 0.05
35 30 0.14
36 8 0.04
38 13 0.06
39 29 0.13
40 5 0.02
41 13 0.06
42 13 0.06
43 54 0.25
44 30 0.14
45 7 0.03
46 7 0.03
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (41 bp):
TACTAAAATATAATTTAAAATAATTATTATTAAATATAATT
Found at i:63262000 original size:32 final size:32
Alignment explanation
Indices: 63261964--63262027 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
63261954 TATATAATAC
*
63261964 TATAAAATATAATTTAAATAATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
** ** *
63261996 TATAATTTATAATCTACTTTATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
63262028 CTGCAATACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (32 bp):
TATAAAATATAATCTAAATAATTATTATTAAA
Found at i:63312947 original size:16 final size:15
Alignment explanation
Indices: 63312922--63312951 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
63312912 GAGATTAAGT
63312922 TAATCATATTAATTG
1 TAATCATATTAATTG
63312937 TAATACATATTAATT
1 TAAT-CATATTAATT
63312952 ACATTTAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (15 bp):
TAATCATATTAATTG
Found at i:63312968 original size:17 final size:18
Alignment explanation
Indices: 63312941--63312978 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
63312931 TAATTGTAAT
63312941 ACATATTAATTACATTTA
1 ACATATTAATTACATTTA
63312959 ACAT-TTAATTACATTTA
1 ACATATTAATTACATTTA
63312976 ACA
1 ACA
63312979 GAGGATCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (18 bp):
ACATATTAATTACATTTA
Found at i:63315676 original size:8 final size:7
Alignment explanation
Indices: 63315665--63315720 Score: 85
Period size: 7 Copynumber: 7.6 Consensus size: 7
63315655 AATATTAAAA
63315665 TTTTAAGT
1 TTTTAA-T
63315673 TTTTAAT
1 TTTTAAT
63315680 TTTTAAT
1 TTTTAAT
63315687 TTTTAAT
1 TTTTAAT
63315694 TTTTAATT
1 TTTTAA-T
63315702 TTTTAAT
1 TTTTAAT
63315709 TTTTCAAT
1 TTTT-AAT
63315717 TTTT
1 TTTT
63315721 TTGAAGAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
7 26 0.57
8 20 0.43
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (7 bp):
TTTTAAT
Found at i:63315682 original size:14 final size:14
Alignment explanation
Indices: 63315665--63315720 Score: 85
Period size: 15 Copynumber: 3.8 Consensus size: 14
63315655 AATATTAAAA
63315665 TTTTAAGTTTTTAAT
1 TTTTAA-TTTTTAAT
63315680 TTTTAATTTTTAAT
1 TTTTAATTTTTAAT
63315694 TTTTAATTTTTTAAT
1 TTTTAA-TTTTTAAT
63315709 TTTTCAATTTTT
1 TTTT-AATTTTT
63315721 TTGAAGAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.36
15 23 0.59
16 2 0.05
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTTAATTTTTAAT
Found at i:63315864 original size:25 final size:25
Alignment explanation
Indices: 63315836--63315899 Score: 60
Period size: 25 Copynumber: 2.6 Consensus size: 25
63315826 TTTAAGTATA
*
63315836 AATATATCAATATATTTTTATATTG-
1 AATATATCAATATATTTATATA-TGC
* *
63315861 AATAAATCTAA-ATATTTATGTATGC
1 AATATATC-AATATATTTATATATGC
*
63315886 AATATATAAATATA
1 AATATATCAATATA
63315900 AAATGATGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
24 4 0.13
25 25 0.81
26 2 0.06
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (25 bp):
AATATATCAATATATTTATATATGC
Found at i:63316119 original size:14 final size:15
Alignment explanation
Indices: 63316097--63316135 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
63316087 CCTCTTACAT
63316097 AACCATAAA-TCATA
1 AACCATAAACTCATA
*
63316111 AACCCTAAACTCATA
1 AACCATAAACTCATA
*
63316126 ATCCATAAAC
1 AACCATAAAC
63316136 CTTAAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCATAAACTCATA
Found at i:63316148 original size:22 final size:22
Alignment explanation
Indices: 63316107--63316148 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
63316097 AACCATAAAT
* *
63316107 CATAAACCCTAAACTCATAATC
1 CATAAACCCTAAAATAATAATC
*
63316129 CATAAACCTTAAAATAATAA
1 CATAAACCCTAAAATAATAA
63316149 CTCATGCACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (22 bp):
CATAAACCCTAAAATAATAATC
Found at i:63316317 original size:14 final size:14
Alignment explanation
Indices: 63316288--63316338 Score: 59
Period size: 15 Copynumber: 3.6 Consensus size: 14
63316278 CTAATCTAAA
*
63316288 CCCTAAACTCTTAAT
1 CCCTAAAC-ATTAAT
63316303 CCCTAAACATTAAT
1 CCCTAAACATTAAT
*
63316317 CCCTAAAACATAAAT
1 CCCT-AAACATTAAT
63316332 -CCTAAAC
1 CCCTAAAC
63316339 CATAAACCCC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 4 0.12
14 12 0.36
15 17 0.52
ACGTcount: A:0.43, C:0.31, G:0.00, T:0.25
Consensus pattern (14 bp):
CCCTAAACATTAAT
Found at i:63316342 original size:14 final size:14
Alignment explanation
Indices: 63316300--63316349 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
63316290 CTAAACTCTT
*
63316300 AATCCCTAAACATT
1 AATCCCTAAACATA
63316314 AATCCCTAAAACATA
1 AATCCCT-AAACATA
63316329 AAT-CCTAAACCATA
1 AATCCCTAAA-CATA
*
63316343 AACCCCT
1 AATCCCT
63316350 CACCCTTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 3 0.10
14 16 0.52
15 12 0.39
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (14 bp):
AATCCCTAAACATA
Found at i:63316449 original size:15 final size:15
Alignment explanation
Indices: 63316424--63316466 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
63316414 ATAGTTAACT
63316424 CATAAACCTTAAACC
1 CATAAACCTTAAACC
* *
63316439 CATATAGCTTAAA-C
1 CATAAACCTTAAACC
63316453 CATAAACCTTAAAC
1 CATAAACCTTAAAC
63316467 TATAATGATA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.47, C:0.28, G:0.02, T:0.23
Consensus pattern (15 bp):
CATAAACCTTAAACC
Found at i:63316463 original size:14 final size:14
Alignment explanation
Indices: 63316424--63316471 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
63316414 ATAGTTAACT
63316424 CATAAACCTTAAACC
1 CATAAACCTTAAA-C
* *
63316439 CATATAGCTTAAAC
1 CATAAACCTTAAAC
63316453 CATAAACCTTAAAC
1 CATAAACCTTAAAC
*
63316467 TATAA
1 CATAA
63316472 TGATAATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 17 0.61
15 11 0.39
ACGTcount: A:0.48, C:0.25, G:0.02, T:0.25
Consensus pattern (14 bp):
CATAAACCTTAAAC
Found at i:63316838 original size:22 final size:22
Alignment explanation
Indices: 63316793--63316840 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
63316783 GTTTAAGATT
*
63316793 TTTTAAGGTTTAAGAGTTTAGTG
1 TTTTAAGGATTAAGAG-TTAGTG
63316816 TTTTAAGGATTATAGA-TTAGTG
1 TTTTAAGGATTA-AGAGTTAGTG
63316838 TTT
1 TTT
63316841 ATGATTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 9 0.39
23 11 0.48
24 3 0.13
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (22 bp):
TTTTAAGGATTAAGAGTTAGTG
Found at i:63316939 original size:41 final size:41
Alignment explanation
Indices: 63316882--63317198 Score: 465
Period size: 41 Copynumber: 7.8 Consensus size: 41
63316872 GTTATATGAC
*
63316882 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
63316923 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * *
63316964 TTTTAACGGTGTTTTACCAAAAGCGCCGCTAATGCACCGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
63317005 TTCTAGCGGTGTTTTACCAAAAGCGCCGCTAATACTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * *
63317046 TTCTAGCAGCGTTTTACCAAAAGTGCCGCTAATGTTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
63317087 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
** *
63317128 TTTTAGCGGCGTTTTACCAAAAGCGCCATTATTGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
63317168 TTTTAGCGGTGTTTTACCAAAAACGCCGCTA
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTA
63317199 TTTCTCTATG
Statistics
Matches: 250, Mismatches: 26, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
40 29 0.12
41 221 0.88
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:63317252 original size:12 final size:12
Alignment explanation
Indices: 63317237--63317262 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
63317227 GTTTTTTTAT
63317237 AAAACGCCGCTA
1 AAAACGCCGCTA
63317249 AAAACGCCGCTA
1 AAAACGCCGCTA
63317261 AA
1 AA
63317263 GCCCTGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:63324179 original size:34 final size:34
Alignment explanation
Indices: 63324118--63324189 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
63324108 AAATAAATAC
* **
63324118 AAATTAAACCCAATATCCAAATATAATTTTGCAA
1 AAATTAAACCCAATATCAAAATATAATTTAACAA
*
63324152 AAATTAAAACCCAAT-TCAAAATTTAATTTAACAA
1 AAATT-AAACCCAATATCAAAATATAATTTAACAA
63324186 AAAT
1 AAAT
63324190 AATTTTTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 24 0.73
35 9 0.27
ACGTcount: A:0.54, C:0.15, G:0.01, T:0.29
Consensus pattern (34 bp):
AAATTAAACCCAATATCAAAATATAATTTAACAA
Found at i:63328861 original size:6 final size:6
Alignment explanation
Indices: 63328852--63328876 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
63328842 TTATTTTTAT
63328852 TTAATA TTAATA TTAATA TTAATA T
1 TTAATA TTAATA TTAATA TTAATA T
63328877 AAAATTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAATA
Found at i:63328971 original size:14 final size:14
Alignment explanation
Indices: 63328952--63328980 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
63328942 AACATTTAAA
63328952 AATTTTTAAAAATT
1 AATTTTTAAAAATT
63328966 AATTTTTAAAAATT
1 AATTTTTAAAAATT
63328980 A
1 A
63328981 TGACTAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AATTTTTAAAAATT
Found at i:63331555 original size:50 final size:50
Alignment explanation
Indices: 63331497--63331596 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
63331487 AAATTTAAAG
63331497 TTAAACTAATGACCCCTGTTGCTTGGAATTCATTGATTTTGCCCATGCAC
1 TTAAACTAATGACCCCTGTTGCTTGGAATTCATTGATTTTGCCCATGCAC
63331547 TTAAACTAATGACCCCTGTTGCTTGGAATTCATTGATTTTGCCCATGCAC
1 TTAAACTAATGACCCCTGTTGCTTGGAATTCATTGATTTTGCCCATGCAC
63331597 CAATGTTGAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (50 bp):
TTAAACTAATGACCCCTGTTGCTTGGAATTCATTGATTTTGCCCATGCAC
Found at i:63334814 original size:29 final size:28
Alignment explanation
Indices: 63334752--63334815 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 28
63334742 TAAATAAATA
* * *
63334752 TATATTTAAATTTTTTTTATTTTTATTG
1 TATAATTAAATTTTTTTTATTATAATTG
*
63334780 TTTAATTAAATTTATTTTTATCTATAATT-
1 TATAATTAAATTT-TTTTTAT-TATAATTG
63334809 TATAATT
1 TATAATT
63334816 TATATTGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
28 11 0.38
29 13 0.45
30 5 0.17
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (28 bp):
TATAATTAAATTTTTTTTATTATAATTG
Found at i:63335102 original size:15 final size:15
Alignment explanation
Indices: 63335084--63335137 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
63335074 TATACTAAAA
63335084 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
63335099 ATATTTATAATTATAAT
1 ATATTTATTA-T-TAAT
*
63335116 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
63335133 ATATT
1 ATATT
63335138 AATATTGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:63335123 original size:19 final size:19
Alignment explanation
Indices: 63335099--63335135 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
63335089 TATTATTAAT
*
63335099 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
63335118 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
63335136 TTAATATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:63335201 original size:16 final size:16
Alignment explanation
Indices: 63335170--63335206 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
63335160 ATCTAAATAA
63335170 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
63335186 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
63335202 TATTA
1 TATTA
63335207 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:63335247 original size:20 final size:22
Alignment explanation
Indices: 63335225--63335268 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
63335215 TTGAAATATT
63335225 AAATA-ATTTATTAAAATAATA
1 AAATATATTTATTAAAATAATA
* *
63335246 AAATATATTTATTATATTAATA
1 AAATATATTTATTAAAATAATA
63335268 A
1 A
63335269 TTTATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AAATATATTTATTAAAATAATA
Found at i:63335273 original size:16 final size:17
Alignment explanation
Indices: 63335247--63335278 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
63335237 AAAATAATAA
63335247 AATATATTTATTATATT
1 AATATATTTATTATATT
63335264 AATA-ATTTATTATAT
1 AATATATTTATTATAT
63335279 GACTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATATATTTATTATATT
Found at i:63338155 original size:32 final size:32
Alignment explanation
Indices: 63338114--63338236 Score: 106
Period size: 33 Copynumber: 3.8 Consensus size: 32
63338104 GTACCCAGTG
* * *
63338114 GTACAACTTGAAAAGGTTATGTACAATTTGTGT
1 GTAC-ACTTGAAAAGGTAAGGTACACTTTGTGT
* * *
63338147 GTACACTTGGAAAGGTTAGGTATACTTTGTGT
1 GTACACTTGAAAAGGTAAGGTACACTTTGTGT
* * *
63338179 ATAC-CATATGAAAAGGAAAGGTATACTTTGTGT
1 GTACAC-T-TGAAAAGGTAAGGTACACTTTGTGT
*
63338212 GTACCACTTGAAAAGG-AATGTACAC
1 GTA-CACTTGAAAAGGTAAGGTACAC
63338237 CTCAAGTGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
31 1 0.01
32 35 0.47
33 36 0.48
34 2 0.03
35 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (32 bp):
GTACACTTGAAAAGGTAAGGTACACTTTGTGT
Found at i:63338201 original size:33 final size:33
Alignment explanation
Indices: 63338140--63338229 Score: 112
Period size: 33 Copynumber: 2.8 Consensus size: 33
63338130 TTATGTACAA
* * **
63338140 TTTGTGTGTA-CACTTGGAAAGGTTAGGTATAC
1 TTTGTGTATACCACTTGAAAAGGAAAGGTATAC
63338172 TTTGTGTATACCA-TATGAAAAGGAAAGGTATAC
1 TTTGTGTATACCACT-TGAAAAGGAAAGGTATAC
*
63338205 TTTGTGTGTACCACTTGAAAAGGAA
1 TTTGTGTATACCACTTGAAAAGGAA
63338230 TGTACACCTC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
32 10 0.20
33 39 0.78
34 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (33 bp):
TTTGTGTATACCACTTGAAAAGGAAAGGTATAC
Found at i:63344295 original size:5 final size:5
Alignment explanation
Indices: 63344285--63344315 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
63344275 TTATGTTTTA
63344285 ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
63344316 AAACTAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:63345592 original size:15 final size:15
Alignment explanation
Indices: 63345572--63345628 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
63345562 CGATGAATTT
63345572 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
63345587 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
63345602 ATTGAATTTATATTG
1 ATTGAATTTATATTG
63345617 ATTGAA-TTATAT
1 ATTGAATTTATAT
63345629 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:63346026 original size:23 final size:23
Alignment explanation
Indices: 63346011--63346086 Score: 88
Period size: 21 Copynumber: 3.5 Consensus size: 23
63346001 CAGGAACTTT
63346011 ATGTGTCGTATTTCAGGCACCTC
1 ATGTGTCGTATTTCAGGCACCTC
*
63346034 GTGTGTCGTA--TCAGGCACCTC
1 ATGTGTCGTATTTCAGGCACCTC
* * *
63346055 GTGTGTCGT-TTT-AGGCACTTT
1 ATGTGTCGTATTTCAGGCACCTC
63346076 ATGTGTCGTAT
1 ATGTGTCGTAT
63346087 ACTGATCAGG
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
21 35 0.76
22 2 0.04
23 9 0.20
ACGTcount: A:0.14, C:0.21, G:0.26, T:0.38
Consensus pattern (23 bp):
ATGTGTCGTATTTCAGGCACCTC
Found at i:63349191 original size:39 final size:39
Alignment explanation
Indices: 63349137--63349240 Score: 145
Period size: 39 Copynumber: 2.7 Consensus size: 39
63349127 TGTGTATCTG
* *
63349137 GACTTAGGGTTCGCAGGCTATGTGCTAGAATTATATCCA
1 GACTTAAGGTCCGCAGGCTATGTGCTAGAATTATATCCA
* *
63349176 GACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCG
1 GACTTAAGGTCCGCAGGCTATGTGCTAGAATTATATCCA
* * *
63349215 GGCTTAAAGTCCGCAGGCTACGTGCT
1 GACTTAAGGTCCGCAGGCTATGTGCT
63349241 GGAAATATGT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (39 bp):
GACTTAAGGTCCGCAGGCTATGTGCTAGAATTATATCCA
Found at i:63349241 original size:39 final size:39
Alignment explanation
Indices: 63349148--63349288 Score: 167
Period size: 39 Copynumber: 3.6 Consensus size: 39
63349138 ACTTAGGGTT
* * * * *
63349148 CGCAGGCTATGTGCTAGAATTATATCCAGACTTAAGGTC
1 CGCAGGCTACGTGCTGGAATTATATCCGGGCTTAAAGTC
*
63349187 CGCAGGCTATGTGCTGGAATTATATCCGGGCTTAAAGTC
1 CGCAGGCTACGTGCTGGAATTATATCCGGGCTTAAAGTC
* *
63349226 CGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTC
1 CGCAGGCTACGTGCTGGAATTATATCCGGGCTTAAAGTC
* * *
63349264 TCGCAGGCTTCGAGCTGGTATTATA
1 -CGCAGGCTACGTGCTGGAATTATA
63349289 CTGGGTTTAA
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 7 0.08
39 82 0.92
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
CGCAGGCTACGTGCTGGAATTATATCCGGGCTTAAAGTC
Found at i:63355105 original size:39 final size:39
Alignment explanation
Indices: 63355051--63355174 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
63355041 ATTTGATGTG
63355051 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
63355090 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
63355129 TATCCGGACTTAAGGTCTGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
63355168 TGTCCGG
1 TATCCGG
63355175 GCTAAAGTCT
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:63355190 original size:39 final size:40
Alignment explanation
Indices: 63355051--63355201 Score: 148
Period size: 39 Copynumber: 3.9 Consensus size: 40
63355041 ATTTGATGTG
** * *
63355051 TATCCGGACTTAGGGTC-CGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAAGTCTCGCAGGCTACGTGCTGGAAATA
* ** * *
63355090 TATCCAGACTTAGGGTC-CGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAAGTCTCGCAGGCTACGTGCTGGAAATA
*
63355129 TATCCGGACTTAAGGTCT-GCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAAGTCTCGCAGGCTACGTGCTGGAAATA
* * * *
63355168 TGTCCGGGC-TAAAGTCTCGCAGGCTTCGAGCTGG
1 TATCCGGACTTAAAGTCTCGCAGGCTACGTGCTGG
63355202 TATTATACCG
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
38 7 0.07
39 93 0.93
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGACTTAAAGTCTCGCAGGCTACGTGCTGGAAATA
Found at i:63355201 original size:78 final size:78
Alignment explanation
Indices: 63355051--63355212 Score: 186
Period size: 78 Copynumber: 2.1 Consensus size: 78
63355041 ATTTGATGTG
* * * **
63355051 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCAGACTTAGGGTCCGCAGGCTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCAGACTTAAAGTCCGCAGGCTA
*
63355116 TGTGCTGGAATTA
66 TGAGCTGGAATTA
* * * *
63355129 TATCCGGACTTAAGGTCTGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCTCGCAGGCT
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCAGACTTAAAGTC-CGCAGGCT
*
63355193 -TCGAGCTGGTATTA
65 AT-GAGCTGGAATTA
63355207 TA-CCGG
1 TATCCGG
63355213 GTTTAAATTC
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
77 10 0.14
78 61 0.86
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (78 bp):
TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCAGACTTAAAGTCCGCAGGCTA
TGAGCTGGAATTA
Found at i:63358923 original size:21 final size:21
Alignment explanation
Indices: 63358899--63358940 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63358889 TAAATTTTAC
*
63358899 TCAATTTAATACAATTCACAT
1 TCAATTCAATACAATTCACAT
* *
63358920 TCAATTCCATTCAATTCACAT
1 TCAATTCAATACAATTCACAT
63358941 CTCAGGCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (21 bp):
TCAATTCAATACAATTCACAT
Found at i:63358930 original size:10 final size:11
Alignment explanation
Indices: 63358910--63358940 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
63358900 CAATTTAATA
63358910 CAATTCACATT
1 CAATTCACATT
63358921 CAATTC-CATT
1 CAATTCACATT
63358931 CAATTCACAT
1 CAATTCACAT
63358941 CTCAGGCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (11 bp):
CAATTCACATT
Found at i:63364924 original size:127 final size:126
Alignment explanation
Indices: 63364676--63364976 Score: 383
Period size: 126 Copynumber: 2.4 Consensus size: 126
63364666 ATATTTCATG
63364676 TTTGGGAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTTTTTTGCATTCGACTAAAAT
1 TTTGGGAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGA--TTTTTGCATTCGACTAAAAT
63364741 ACAAAATATCCTTTTGAAATTTCGTCTATGCTTTCTTAAATTAAAACAAGGCAATATTTC-GAA
64 ACAAAATATCCTTTTGAAATTTCGTCTATGCTTTCTTAAATTAAAACAAGGCAATA-TTCAGAA
* * *
63364804 TTTGAGGAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTTTT-CATTCGATTAAAGTG
1 TTTG-GGAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTTTTGCATTCGACTAAAATA
** * * ** *
63364868 CGGAATATTCCTTTTGAAATTTCAT-TCATGTTTTCTTAAATTAAAATGAGGCAATATTCAGTA
65 CAAAATA-TCCTTTTGAAATTTCGTCT-ATGCTTTCTTAAATTAAAACAAGGCAATATTCAGAA
* * * * * *
63364931 TTTGGAAGTTCGATAAATCGTGCGCAATCGTGCTGGGTTTCGATTT
1 TTTGGGAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTT
63364977 ACCGTTTGGC
Statistics
Matches: 153, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
126 57 0.37
127 53 0.35
128 4 0.03
129 39 0.25
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (126 bp):
TTTGGGAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTTTTGCATTCGACTAAAATAC
AAAATATCCTTTTGAAATTTCGTCTATGCTTTCTTAAATTAAAACAAGGCAATATTCAGAA
Found at i:63365017 original size:126 final size:127
Alignment explanation
Indices: 63364682--63365017 Score: 322
Period size: 126 Copynumber: 2.6 Consensus size: 127
63364672 CATGTTTGGG
* * ** * * * *
63364682 AGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTTTTTTGCATTCGACTAAAATACAAAA
1 AGTTCGAGAAATCATGCCCAATCGTGCTGGGTTTCGA---TTTACCATTCGACCAAAGTGCCAAA
*
63364747 TATCCTTTTGAAATTTC-GTCTATGCTTTCTTAAATTAAAACAAGGCAATATTTCGAATTTGAGG
63 TATCCTTTTGAAATTTCAGTCTATGCTTTCTTAAATTAAAACAAGGCAATATTTCGAATTTGAGA
* * ** ** **
63364811 AGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGATTAAAGTGCGGAATAT
1 AGTTCGAGAAATCATGCCCAATCGTGCTGGGTTTCGATTTACCATTCGACCAAAGTGCCAAATA-
* * ** *
63364876 TCCTTTTGAAATTTCATTC-ATGTTTTCTTAAATTAAAATGAGGCAATA-TTCAGTATTTG-GA
65 TCCTTTTGAAATTTCAGTCTATGCTTTCTTAAATTAAAACAAGGCAATATTTC-GAATTTGAGA
* * * * * *
63364937 AGTTCGATAAATCGTGCGCAATCGTGCTGGGTTTCGATTTACCGTTTGGCCAAA-TAGCCAAATA
1 AGTTCGAGAAATCATGCCCAATCGTGCTGGGTTTCGATTTACCATTCGACCAAAGT-GCCAAATA
63365001 TCCTTTTTGAAATTTCA
65 TCC-TTTTGAAATTTCA
63365018 AATGCATGAA
Statistics
Matches: 176, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
125 4 0.02
126 86 0.49
127 47 0.27
128 2 0.01
129 37 0.21
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (127 bp):
AGTTCGAGAAATCATGCCCAATCGTGCTGGGTTTCGATTTACCATTCGACCAAAGTGCCAAATAT
CCTTTTGAAATTTCAGTCTATGCTTTCTTAAATTAAAACAAGGCAATATTTCGAATTTGAGA
Found at i:63374857 original size:64 final size:64
Alignment explanation
Indices: 63374754--63374881 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
63374744 TCATTCATGA
* *
63374754 TACATCTAGTTAGGGGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 TACATCTAGTTAGGAGCATTTGATTCATTGCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
63374818 TACATCTAGTTAGGAGCATTTGATTCATTGCGATTATAGCATCCTAGTTATTTGGCATAAGCAT
1 TACATCTAGTTAGGAGCATTTGATTCATTGCGATCATAGCATCCTAATTATTTGACATAAGCAT
63374882 AGATACATCA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (64 bp):
TACATCTAGTTAGGAGCATTTGATTCATTGCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:63375044 original size:84 final size:84
Alignment explanation
Indices: 63374948--63375282 Score: 553
Period size: 84 Copynumber: 4.0 Consensus size: 84
63374938 CGGTGAATTC
* *
63374948 ACAAGCCTTAACCCCCCAAGCAGTAGGGTAATAGGCTGGAAAATACAGATCTCCCCTAAACAGTA
1 ACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTA
* *
63375013 GTGGAGCAAATCGAAGACA
66 GTGGAACAGATCGAAGACA
*
63375032 ACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAATAGTA
1 ACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTA
*
63375097 GTGGAACAGATCGAATACA
66 GTGGAACAGATCGAAGACA
* *
63375116 GCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGATGGAAAATACAGATCTCCCCTAAACAGTA
1 ACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTA
* *
63375181 GTGGAGCAGATCAAAGACA
66 GTGGAACAGATCGAAGACA
* * *
63375200 TCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAAATACATATCTCCCCTAAACAGTA
1 ACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTA
63375265 GTGGAACAGATCGAAGAC
66 GTGGAACAGATCGAAGAC
63375283 GGGTTCCTAT
Statistics
Matches: 233, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 233 1.00
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (84 bp):
ACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTA
GTGGAACAGATCGAAGACA
Found at i:63375097 original size:40 final size:40
Alignment explanation
Indices: 63375044--63375181 Score: 122
Period size: 40 Copynumber: 3.4 Consensus size: 40
63375034 AAGCCTTAAC
* *
63375044 CCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCT
1 CCCCTAAACAGTAGGGTAACAGGATGGAAAATACAGATCT
* * *
63375084 CCCCTAAATAGTAGTGG-AACA-GATCG--AATACAGCAAGCCTT
1 CCCCTAAACAGTAG-GGTAACAGGATGGAAAATACAG--A-TC-T
*
63375125 AACCCCCTAAGCAGTAGGGTAACAGGATGGAAAATACAGATCT
1 ---CCCCTAAACAGTAGGGTAACAGGATGGAAAATACAGATCT
63375168 CCCCTAAACAGTAG
1 CCCCTAAACAGTAG
63375182 TGGAGCAGAT
Statistics
Matches: 76, Mismatches: 10, Indels: 24
0.69 0.09 0.22
Matches are distributed among these distances:
37 7 0.09
39 4 0.05
40 30 0.39
41 3 0.04
43 3 0.04
44 17 0.22
45 5 0.07
47 7 0.09
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (40 bp):
CCCCTAAACAGTAGGGTAACAGGATGGAAAATACAGATCT
Found at i:63375141 original size:44 final size:44
Alignment explanation
Indices: 63375000--63375233 Score: 115
Period size: 44 Copynumber: 5.5 Consensus size: 44
63374990 ATACAGATCT
* * * *
63375000 CCCCTAAACAGTAGTGG-AGCAAATCGAAGACAACAAGCCTTAAC
1 CCCCTAAACAGTAG-GGTAACAGATCGAATACAGCAAGCCTTAAC
* * * *
63375044 CCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAG--A-TC-T---
1 CCCCTAAACAGTAGGGTAACA-GATCG--AATACAGCAAGCCTTAAC
*
63375084 CCCCTAAATAGTAGTGG-AACAGATCGAATACAGCAAGCCTTAAC
1 CCCCTAAACAGTAG-GGTAACAGATCGAATACAGCAAGCCTTAAC
* * *
63375128 CCCCTAAGCAGTAGGGTAACAGGATGGAAAATACAG--A-TC-T---
1 CCCCTAAACAGTAGGGTAACA-GATCG--AATACAGCAAGCCTTAAC
* * * *
63375168 CCCCTAAACAGTAGTGG-AGCAGATCAAAGACATCAAGCCTTAAC
1 CCCCTAAACAGTAG-GGTAACAGATCGAATACAGCAAGCCTTAAC
*
63375212 CCCCTAAGCAGTAGGGTAACAG
1 CCCCTAAACAGTAGGGTAACAG
63375234 GCTGAAAAAT
Statistics
Matches: 139, Mismatches: 26, Indels: 50
0.65 0.12 0.23
Matches are distributed among these distances:
37 12 0.09
39 8 0.06
40 34 0.24
41 6 0.04
43 8 0.06
44 51 0.37
45 8 0.06
47 12 0.09
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.16
Consensus pattern (44 bp):
CCCCTAAACAGTAGGGTAACAGATCGAATACAGCAAGCCTTAAC
Found at i:63375264 original size:40 final size:40
Alignment explanation
Indices: 63375044--63375273 Score: 116
Period size: 40 Copynumber: 5.5 Consensus size: 40
63375034 AAGCCTTAAC
* * * *
63375044 CCCCTAAGCAGTAG-GGTAACAGGCTGGAAAATACAGATCT
1 CCCCTAAACAGTAGTGG-AACAGGATGAAAAATACATATCT
* * *
63375084 CCCCTAAATAGTAGTGGAACA-GATCGAATACAGCA-AGCCTTAAC-
1 CCCCTAAACAGTAGTGGAACAGGAT-GAA-A-A--ATA--CATATCT
* * *
63375128 CCCCTAAGCAGTAG-GGTAACAGGATGGAAAATACAGATCT
1 CCCCTAAACAGTAGTGG-AACAGGATGAAAAATACATATCT
* * * *
63375168 CCCCTAAACAGTAGTGGAGCA-GATCAAAGACATCAAGCCTTAAC-
1 CCCCTAAACAGTAGTGGAACAGGATGAAA-A-AT--A--CATATCT
* *
63375212 CCCCTAAGCAGTAG-GGTAACAGGCTGAAAAATACATATCT
1 CCCCTAAACAGTAGTGG-AACAGGATGAAAAATACATATCT
63375252 CCCCTAAACAGTAGTGGAACAG
1 CCCCTAAACAGTAGTGGAACAG
63375274 ATCGAAGACG
Statistics
Matches: 140, Mismatches: 27, Indels: 46
0.66 0.13 0.22
Matches are distributed among these distances:
39 14 0.10
40 54 0.39
41 11 0.08
42 2 0.01
43 9 0.06
44 36 0.26
45 14 0.10
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.17
Consensus pattern (40 bp):
CCCCTAAACAGTAGTGGAACAGGATGAAAAATACATATCT
Found at i:63377598 original size:127 final size:127
Alignment explanation
Indices: 63377342--63377653 Score: 407
Period size: 126 Copynumber: 2.5 Consensus size: 127
63377332 AACATAAGGA
* * *
63377342 AATATTTCGTGTTTGG-GAGTTTGAGAGATCATGCCCAATCGTGCTAGGTTTCGATTTTTTTGCA
1 AATATTTCGTATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGA--TTTTTGCA
** *
63377406 TTCGACTAAAATACAAAATATCCTTTTGAAATTTTGTCTATGCTTTCTTAAATTAAAACGAGGC
64 TTCGACTAAAATACAAAATATCCTTTTGAAATTTCATCCATGCTTTCTTAAATTAAAACGAGGC
*
63377470 AATATTTCGAATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTT-CATT
1 AATATTTCGTATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTGCATT
* * * * *
63377534 CGATTAAAATGCAGAATATTCCTTTTGAAATTTCATCCATGTTTTCTTAAATTAAAATGAGGC
66 CGACTAAAATACAAAATA-TCCTTTTGAAATTTCATCCATGCTTTCTTAAATTAAAACGAGGC
* * * * *
63377597 AATA-TTCAGTATTTAGA-AGTTCGATAAATCGTGCGCAATCGTGCTGGGTTTCGATTT
1 AATATTTC-GTATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTT
63377654 ACTGTTTGGC
Statistics
Matches: 163, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
126 58 0.36
127 55 0.34
128 14 0.09
129 36 0.22
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.38
Consensus pattern (127 bp):
AATATTTCGTATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTGCATT
CGACTAAAATACAAAATATCCTTTTGAAATTTCATCCATGCTTTCTTAAATTAAAACGAGGC
Found at i:63377687 original size:126 final size:125
Alignment explanation
Indices: 63377358--63377694 Score: 331
Period size: 126 Copynumber: 2.6 Consensus size: 125
63377348 TCGTGTTTGG
* * * * * * *
63377358 GAGTTTGAGAGATCATGCCCAATCGTGCTAGGTTTCGATTTTTTTGCATTCGACTAAAATACAAA
1 GAGTTCGAGAAATCGTGCCCAATCGTGCTGGGTTTCGA--TTTCT-CATTCGACCAAAATGC-AA
** * *
63377423 ATATCCTTTTGAAATTTTGTCTATGCTTTCTTAAATTAAAACGAGGCAATATTTCGAATTTGGA
62 ATATCCTTTTGAAATTTCATCCATGCTTTCTTAAATTAAAACGAGGCAATATTTCGAATTTAGA
* * * **
63377487 GAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGATTAAAATGCAGAATA
1 GAGTTCGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTCTCATTCGACCAAAATGCA-AATA
* * *
63377552 TTCCTTTTGAAATTTCATCCATGTTTTCTTAAATTAAAATGAGGCAATA-TTCAGTATTTAGA
65 -TCCTTTTGAAATTTCATCCATGCTTTCTTAAATTAAAACGAGGCAATATTTC-GAATTTAGA
* * * * *
63377614 -AGTTCGATAAATCGTGCGCAATCGTGCTGGGTTTCGATTTACT-GTTTGGCC-AAATAGTCAAA
1 GAGTTCGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTT-CTCATTCGACCAAAAT-G-CAAA
63377676 TATCCTTTTTGAAATTTCA
63 TATCC-TTTTGAAATTTCA
63377695 AATGCATGAG
Statistics
Matches: 180, Mismatches: 21, Indels: 17
0.83 0.10 0.08
Matches are distributed among these distances:
125 8 0.04
126 78 0.43
127 58 0.32
129 36 0.20
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (125 bp):
GAGTTCGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTCTCATTCGACCAAAATGCAAATAT
CCTTTTGAAATTTCATCCATGCTTTCTTAAATTAAAACGAGGCAATATTTCGAATTTAGA
Found at i:63381078 original size:63 final size:64
Alignment explanation
Indices: 63380960--63381083 Score: 214
Period size: 63 Copynumber: 2.0 Consensus size: 64
63380950 CTCATTATTG
63380960 AATATCCTATCGTTTAAATTTACTCATAGGTCTTCATCAACTCTTAAATAAGAAAATAATGTTA
1 AATATCCTATCGTTTAAATTTACTCATAGGTCTTCATCAACTCTTAAATAAGAAAATAATGTTA
* * *
63381024 AATATTCTGTCGTTTAAATTTACTCATA-GTCTTCATCAACTCTTAAATAGGAAAATAATG
1 AATATCCTATCGTTTAAATTTACTCATAGGTCTTCATCAACTCTTAAATAAGAAAATAATG
63381084 CGCTTTAACG
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
63 31 0.54
64 26 0.46
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (64 bp):
AATATCCTATCGTTTAAATTTACTCATAGGTCTTCATCAACTCTTAAATAAGAAAATAATGTTA
Found at i:63382844 original size:6 final size:6
Alignment explanation
Indices: 63382835--63382870 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
63382825 TTGTTTTTTT
63382835 TACTCC TACTCC TACTCC TACTCC TACTCC TACTCC
1 TACTCC TACTCC TACTCC TACTCC TACTCC TACTCC
63382871 ATTCAACTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33
Consensus pattern (6 bp):
TACTCC
Found at i:63389610 original size:40 final size:40
Alignment explanation
Indices: 63389544--63389619 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
63389534 GTATCGTATA
* *
63389544 TAGCCGAAGCTATTCCAACTCGCACACTTAGTGCCATTTG
1 TAGCCGAAGCTATTCAAACTCACACACTTAGTGCCATTTG
*
63389584 TAGCCGAAGCTATATTAAACT-ACACACTTAGTGCCA
1 TAGCCGAAGCTAT-TCAAACTCACACACTTAGTGCCA
63389620 AGCATAGTCG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 27 0.84
41 5 0.16
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (40 bp):
TAGCCGAAGCTATTCAAACTCACACACTTAGTGCCATTTG
Found at i:63397054 original size:40 final size:40
Alignment explanation
Indices: 63396989--63397064 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
63396979 GTATCGTATA
*
63396989 TAGCCGAAGCTATTCCAACTCGCACACTTAGTGCCATTTG
1 TAGCCGAAGCTATTCAAACTCGCACACTTAGTGCCATTTG
*
63397029 TAGCCGAAGCTATATTAAACT-GCACACTTAGTGCCA
1 TAGCCGAAGCTAT-TCAAACTCGCACACTTAGTGCCA
63397065 AGCATAGTCG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 28 0.85
41 5 0.15
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (40 bp):
TAGCCGAAGCTATTCAAACTCGCACACTTAGTGCCATTTG
Found at i:63399219 original size:863 final size:857
Alignment explanation
Indices: 63397495--63399214 Score: 3054
Period size: 863 Copynumber: 2.0 Consensus size: 857
63397485 AGTCCCTCAA
* *
63397495 AATAACATTTTTATAATTTAGCCCAAATTGCTCAAATTCATCGAAAATCCAAAAACAAAACATTC
1 AATAACATTTTTACAATTTAGCCCAAATTGCTCAAATTAATCGAAAATCCAAAAACAAAACATTC
*
63397560 AAACCCAACATCAAGCTTTCTTAATTCATCATATAACATCACAAAGCTCATGAATTCATCCATGG
66 AAACCCAACATCAAGCTTTCTTAATTCATCATATAACATCAAAAAGCTCATGAATTCATCCATGG
* *
63397625 CACATTTTCAAATCATTAACAAAATCAAAAATTGAGGCATGGGCTAGTTACAATAATACTTAACA
131 CACATTTTCAAATCATCAACAAAATAAAAAATTGAGGCATGGGCTAGTTAC-A-AATACTTAACA
*
63397690 ACGATCACAAAAACGTAGAAATTATTAAAAACCGATCAAAACTCATACCTTAATTAAACCTTGTA
194 ACGATCACAAAAACGTAGAAATTATCAAAAACCGATCAAAACTCATACCTTAATTAAACCTTGTA
63397755 TGTGTCGAAACTTAAAGCTCTTCAAACATAGGTTTTATTTTCTATTTTCGGTGGATGAACATACA
259 TGTGTCGAAACTTAAAGCTCTTCAAACATAGGTTTTATTTTCTATTTTCGGTGGATGAACATACA
63397820 TAATGGCCTTATTTTTCATGTTTTGTTATAATAATATTTACATAATAAATATTTTACCATTATAA
324 TAATGGCCTTATTTTTCATGTTTTGTTATAATAATATTTACATAATAAATATTTTACCATTATAA
* *
63397885 CCTTTGTTAAACCATTATAAAATCACATAATGGATGGTTTCTAATGTCCATTCAAACTTCCAATG
389 CCTTTGTTAAACCATTATAAAATCACATAATGGATGGTTACTAATGTCCATTCAAAATTCCAATG
*
63397950 GTAAAATAACCACATAAGGATCTCTCATTTACAAAGCCATATCAAATAGACACTTTAACAAGTAG
454 GTAAAAGAACCACATAAGGATCTCTCATTTACAAAGCCATATCAAATAGACACTTTAACAAGTAG
* *
63398015 CAGACAACTTTTACATTTTACACGATTAGGTCTTTTTTCAAAATTAAGCACACAAATATTCAAAT
519 CAGACAACTTTTACATTTTACACGATTAGGTCCTTTTTCAAAATTAAGCACACAAACATTCAAAT
* *
63398080 TTTCATATGAGACTTTCACACATGCTCATTCACATATAATAGGCACGGAAAATAGTATTAAAATA
584 TTTCATACGAGACTTTCACACATGCTCATTCACATATAATAGGCACGGAAAATAATATTAAAATA
* *
63398145 TTTTTTTCTAATTCAGATATGTGGTCCCGAATCTACTATTCCGACTAGGGTTAAAACCAGACTGT
649 TTTTTTTCTAATTCAGATATGTGGTCCCGAAACTACTATTCCGACTAGGGTCAAAACCAGACTGT
63398210 TACACATGTCCTTGCCCATGTGCCTTACACGGCCTGGGCACATGCCCATGTCCCTAACCGCATGC
714 TACACATGTCCTTGCCCATGTGCCTTACACGGCCTGGGCACATGCCCATGTCCCTAACCGCATGC
63398275 TCTTAAATCACAAACAGTGAGTTACATGGCCTAGAAAGATGCTCGTGTCCGTTGCCTATATGAAC
779 TCTTAAAT---AAACA--GA--TACATGGCCTAGAAAGATGCTCGTGTCCGTTGCCTATATGAAC
63398340 CCTACACTAACATGGCCACAC
837 CCTACACTAACATGGCCACAC
*
63398361 AATAACATTTTTACAATTTAGCCCAAATTGCTCAAATTAATTGAAAATCCAAAAACAAAACATTC
1 AATAACATTTTTACAATTTAGCCCAAATTGCTCAAATTAATCGAAAATCCAAAAACAAAACATTC
*
63398426 AAACCCAACATCAAGCTTTCTTAATTCATTATATAACATCAAAAAGCTCATGAATTCATCCATGG
66 AAACCCAACATCAAGCTTTCTTAATTCATCATATAACATCAAAAAGCTCATGAATTCATCCATGG
*
63398491 CACATTTTCAAATCATCAACAAAATAAAAAATTGAGGCATGGGCTAGTTAC-AATACTTAACAAT
131 CACATTTTCAAATCATCAACAAAATAAAAAATTGAGGCATGGGCTAGTTACAAATACTTAACAAC
* *
63398555 GATCACAAAAACGTAGAAATTATCAAAAATCGATCAAAACTCATACCTTAATTAAACCTTGTGTG
196 GATCACAAAAACGTAGAAATTATCAAAAACCGATCAAAACTCATACCTTAATTAAACCTTGTATG
63398620 TGTCGAAACTTAAAGCTCTTCAAACATAGGTTTTATTTTCTATTTTCGGTGGATGAACATACATA
261 TGTCGAAACTTAAAGCTCTTCAAACATAGGTTTTATTTTCTATTTTCGGTGGATGAACATACATA
63398685 ATGGCCTTATTTTTCATGTTTTGTTATAATAATATTTACATAATAAATATTTTACCATTATAACC
326 ATGGCCTTATTTTTCATGTTTTGTTATAATAATATTTACATAATAAATATTTTACCATTATAACC
63398750 TTTGTTAAACCATTATAAAATCACATAATGGATGGTTACTAATGTCCATTCAAAATTCCAATGGT
391 TTTGTTAAACCATTATAAAATCACATAATGGATGGTTACTAATGTCCATTCAAAATTCCAATGGT
*
63398815 CAAAGAACCACATAAGGATCTCTCATTTACAAAGCCATATCAAATAGACACTTTAACAAGTAGCA
456 AAAAGAACCACATAAGGATCTCTCATTTACAAAGCCATATCAAATAGACACTTTAACAAGTAGCA
* *
63398880 GGCAACTTTTACATTTTACGCGATTAGGTCCTTTTTCAAAATTAAGCACACAAACATTCAAATTT
521 GACAACTTTTACATTTTACACGATTAGGTCCTTTTTCAAAATTAAGCACACAAACATTCAAATTT
*
63398945 TCATACGAGACTTTCACACATGTTCATTCACATATAATAGGCACGGAAAATAATATTAAAATATT
586 TCATACGAGACTTTCACACATGCTCATTCACATATAATAGGCACGGAAAATAATATTAAAATATT
* *
63399010 TTTTTCTAATTC-GTATATGTGGTCCCGAAACTATTATTCCGACTAGGGTCAAAACCGGACTGTT
651 TTTTTCTAATTCAG-ATATGTGGTCCCGAAACTACTATTCCGACTAGGGTCAAAACCAGACTGTT
*
63399074 ACACATGTCCTTGCCCATGTGCCTTACACGGCCTGGGCACATGCCCATGTCCCTAACCGCATGGT
715 ACACATGTCCTTGCCCATGTGCCTTACACGGCCTGGGCACATGCCCATGTCCCTAACCGCATGCT
* *
63399139 CTTAAAT-AACA-A-ACATGGCCTAGAAAGATGCTCGTGTCTGTTGCCTATATGAACCCTACATT
780 CTTAAATAAACAGATACATGGCCTAGAAAGATGCTCGTGTCCGTTGCCTATATGAACCCTACACT
63399201 AACATGGCCACAC
845 AACATGGCCACAC
63399214 A
1 A
63399215 TGGCCTGGGC
Statistics
Matches: 824, Mismatches: 29, Indels: 15
0.95 0.03 0.02
Matches are distributed among these distances:
853 62 0.08
856 1 0.00
859 4 0.00
862 1 0.00
863 582 0.71
866 174 0.21
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.31
Consensus pattern (857 bp):
AATAACATTTTTACAATTTAGCCCAAATTGCTCAAATTAATCGAAAATCCAAAAACAAAACATTC
AAACCCAACATCAAGCTTTCTTAATTCATCATATAACATCAAAAAGCTCATGAATTCATCCATGG
CACATTTTCAAATCATCAACAAAATAAAAAATTGAGGCATGGGCTAGTTACAAATACTTAACAAC
GATCACAAAAACGTAGAAATTATCAAAAACCGATCAAAACTCATACCTTAATTAAACCTTGTATG
TGTCGAAACTTAAAGCTCTTCAAACATAGGTTTTATTTTCTATTTTCGGTGGATGAACATACATA
ATGGCCTTATTTTTCATGTTTTGTTATAATAATATTTACATAATAAATATTTTACCATTATAACC
TTTGTTAAACCATTATAAAATCACATAATGGATGGTTACTAATGTCCATTCAAAATTCCAATGGT
AAAAGAACCACATAAGGATCTCTCATTTACAAAGCCATATCAAATAGACACTTTAACAAGTAGCA
GACAACTTTTACATTTTACACGATTAGGTCCTTTTTCAAAATTAAGCACACAAACATTCAAATTT
TCATACGAGACTTTCACACATGCTCATTCACATATAATAGGCACGGAAAATAATATTAAAATATT
TTTTTCTAATTCAGATATGTGGTCCCGAAACTACTATTCCGACTAGGGTCAAAACCAGACTGTTA
CACATGTCCTTGCCCATGTGCCTTACACGGCCTGGGCACATGCCCATGTCCCTAACCGCATGCTC
TTAAATAAACAGATACATGGCCTAGAAAGATGCTCGTGTCCGTTGCCTATATGAACCCTACACTA
ACATGGCCACAC
Found at i:63402548 original size:40 final size:40
Alignment explanation
Indices: 63402466--63402597 Score: 117
Period size: 40 Copynumber: 3.3 Consensus size: 40
63402456 CTTGTAAAAC
* * * *
63402466 AAACGTCGGAAAAGATC-ACTATTAGCGGCACA-TATGTAAA
1 AAACGCCGCAAAAGATCAACCATTAGCGGCGCATTATG--AA
* *
63402506 AAACGCCGCAAAAGATCAAGCATTAGCGGCGC-TTCTTGAA
1 AAACGCCGCAAAAGATCAACCATTAGCGGCGCATT-ATGAA
* * * * *
63402546 AAACGCCGCTATAGGTCGACCATTAGCGGTGCATTATGAA
1 AAACGCCGCAAAAGATCAACCATTAGCGGCGCATTATGAA
63402586 AAACGCCGCAAA
1 AAACGCCGCAAA
63402598 TAAAATAAGC
Statistics
Matches: 73, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
40 57 0.78
41 14 0.19
42 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (40 bp):
AAACGCCGCAAAAGATCAACCATTAGCGGCGCATTATGAA
Found at i:63402694 original size:38 final size:39
Alignment explanation
Indices: 63402640--63402743 Score: 129
Period size: 38 Copynumber: 2.7 Consensus size: 39
63402630 AGCTTTAATG
* * * *
63402640 GCATTAGCGACACTTTTGGAAAAACTCCGCTATAGATT-
1 GCATTAGCGGCGCTTTTAGAAAAACGCCGCTATAGATTA
*
63402678 GCATTAGCGGCGCTTTTATAAAAACGCCGCTATAGATTAA
1 GCATTAGCGGCGCTTTTAGAAAAACGCCGCTATAGATT-A
* *
63402718 GCATTAGCGGCGTTTTTTGAAAAACG
1 GCATTAGCGGCGCTTTTAGAAAAACG
63402744 TCGCAAAAAG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 33 0.59
40 23 0.41
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (39 bp):
GCATTAGCGGCGCTTTTAGAAAAACGCCGCTATAGATTA
Found at i:63402820 original size:21 final size:21
Alignment explanation
Indices: 63402796--63402894 Score: 69
Period size: 21 Copynumber: 4.8 Consensus size: 21
63402786 ATTATTGTCA
* *
63402796 TTAGAGTTTATGGGTTATGGT
1 TTAGAGTTTATAGGTTATAGT
* *
63402817 TTAGGGTTTATAGTTTATAGT
1 TTAGAGTTTATAGGTTATAGT
* * * **
63402838 TTAGAGCTTAGAGTTTAGGGT
1 TTAGAGTTTATAGGTTATAGT
*
63402859 TTATG-GTTTATAGTTTATAGT
1 TTA-GAGTTTATAGGTTATAGT
63402880 TT-GAGATTTAT-GGTT
1 TTAGAG-TTTATAGGTT
63402895 TGGGGTTTAG
Statistics
Matches: 61, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
19 1 0.02
20 4 0.07
21 55 0.90
22 1 0.02
ACGTcount: A:0.22, C:0.01, G:0.27, T:0.49
Consensus pattern (21 bp):
TTAGAGTTTATAGGTTATAGT
Found at i:63402827 original size:14 final size:14
Alignment explanation
Indices: 63402796--63402922 Score: 82
Period size: 14 Copynumber: 9.1 Consensus size: 14
63402786 ATTATTGTCA
*
63402796 TTAGAGTTTATGGG
1 TTAGAGTTTATGGT
*
63402810 TTATG-GTTTAGGGT
1 TTA-GAGTTTATGGT
* *
63402824 TTATAGTTTATAGT
1 TTAGAGTTTATGGT
*
63402838 TTAGAGCTTA-GAGT
1 TTAGAGTTTATG-GT
*
63402852 TTAGGGTTTATGGT
1 TTAGAGTTTATGGT
* *
63402866 TTATAGTTTATAGT
1 TTAGAGTTTATGGT
63402880 TT-GAGATTTATGGT
1 TTAGAG-TTTATGGT
* * *
63402894 TTGGGGTTTAGGGT
1 TTAGAGTTTATGGT
*
63402908 TT-GAGATTTAGGGT
1 TTAGAG-TTTATGGT
63402922 T
1 T
63402923 AGGGGTTTAA
Statistics
Matches: 88, Mismatches: 18, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
13 4 0.05
14 80 0.91
15 4 0.05
ACGTcount: A:0.20, C:0.01, G:0.31, T:0.48
Consensus pattern (14 bp):
TTAGAGTTTATGGT
Found at i:63402927 original size:28 final size:28
Alignment explanation
Indices: 63402878--63402931 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
63402868 ATAGTTTATA
* *
63402878 GTTTGAGATTTATGGTTTGGGGTTTAGG
1 GTTTGAGATTTAGGGTTAGGGGTTTAGG
63402906 GTTTGAGATTTAGGGTTAGGGGTTTA
1 GTTTGAGATTTAGGGTTAGGGGTTTA
63402932 AGGATAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.39, T:0.44
Consensus pattern (28 bp):
GTTTGAGATTTAGGGTTAGGGGTTTAGG
Found at i:63402931 original size:14 final size:14
Alignment explanation
Indices: 63402886--63402931 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
63402876 TAGTTTGAGA
*
63402886 TTTATGGTTTGGGG
1 TTTAGGGTTTGGGG
* *
63402900 TTTAGGGTTTGAGA
1 TTTAGGGTTTGGGG
*
63402914 TTTAGGGTTAGGGG
1 TTTAGGGTTTGGGG
63402928 TTTA
1 TTTA
63402932 AGGATAAATA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.46
Consensus pattern (14 bp):
TTTAGGGTTTGGGG
Found at i:63403339 original size:22 final size:22
Alignment explanation
Indices: 63403287--63403336 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
63403277 GAGTTACTAT
63403287 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGTTTATGGATTATGGG
63403309 TTTAAGGTTTATGG-TGTAT-GG
1 TTTAAGGTTTATGGAT-TATGGG
63403330 TTTAAGG
1 TTTAAGG
63403337 GTTGGAGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (22 bp):
TTTAAGGTTTATGGATTATGGG
Found at i:63403881 original size:113 final size:115
Alignment explanation
Indices: 63403730--63404208 Score: 429
Period size: 114 Copynumber: 4.2 Consensus size: 115
63403720 AAAAACATTG
* * * * * *
63403730 GATTTAACGGCGCTAGGGTATAAACGCCACTAAAGGTTATTC-T-ATTATA-CTAGATGACATCG
1 GATTTAGCGGCGCTAGGGTATAAACGCCACTAATGGTTATTCTTGATTATATCAAAACGACATAG
* ** *
63403792 TTTTTTTTTTATTTTTAGTGGCGTTTTAGGTTAAATCGCCGCAATAGGTTT
66 -TTTTTATGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTT
* * * **
63403843 GATTTAGTGGCGCTAGGTTATAAACGCCACTAATGGTTA-TCTTGTTTATATCAAAACGGTATAG
1 GATTTAGCGGCGCTAGGGTATAAACGCCACTAATGGTTATTCTTGATTATATCAAAACGACATAG
*
63403907 TTTTTATGGATTTTTAGTGGCGTTTTTGGTTAAAACGCCGCAATAGGTTT
66 TTTTTATGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTT
* * * ***
63403957 GATTTAGCGGCGCTAGGGTATAAACGCCACTAATGGTTATT-ATGTTTATATCAAAATGGTGTAG
1 GATTTAGCGGCGCTAGGGTATAAACGCCACTAATGGTTATTCTTGATTATATCAAAACGACATAG
* * * * *
63404021 -TTTTATTGGATTTTTAGTGGCATTTTAGGGTAAAATGCCGTAATAGTTTT
66 TTTTTA-TGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTT
** * * * * * *
63404071 GCCCTTAGCGGCGCTTGGAG-ATAAAACGCCACTAAAT-ATTATTC-TGTTTATGTGAAAACGCC
1 G-ATTTAGCGGCGCTAGG-GTAT-AAACGCCACT-AATGGTTATTCTTGATTATATCAAAACGAC
* * * * *
63404133 GTCGTTTTTTTTTGGATTTTTAGTGGTGTTTTAGGGTT-AAACGCCGCAATAGATTT
62 ATAG--TTTTTATGGATTTTTAGTGGCGTTTTA-GGTTAAAACGCCGCAATAGGTTT
*
63404189 GCCTTTAGCGGCGCTAGGGT
1 G-ATTTAGCGGCGCTAGGGT
63404209 TTATTTTGTT
Statistics
Matches: 305, Mismatches: 46, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
112 2 0.01
113 41 0.13
114 146 0.48
115 23 0.08
116 32 0.10
117 4 0.01
118 50 0.16
119 7 0.02
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (115 bp):
GATTTAGCGGCGCTAGGGTATAAACGCCACTAATGGTTATTCTTGATTATATCAAAACGACATAG
TTTTTATGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTT
Found at i:63403948 original size:114 final size:115
Alignment explanation
Indices: 63403802--63404206 Score: 464
Period size: 114 Copynumber: 3.5 Consensus size: 115
63403792 TTTTTTTTTT
* * *
63403802 ATTTTTAGTGGCGTTTTAGGTTAAATCGCCGCAATAGGTTTG-ATTTAGTGGCGCTAGGTTATAA
1 ATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAGGATATAA
*
63403866 ACGCCACTAATGGTTATCT-TGTTTATATCAAAACGGTATAGTTTTTATGG
66 ACGCCACTAATGGTTAT-TATGTTTATATCAAAACGGTGTAGTTTTTATGG
* *
63403916 ATTTTTAGTGGCGTTTTTGGTTAAAACGCCGCAATAGGTTTG-ATTTAGCGGCGCTAGGGTATAA
1 ATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAGGATATAA
*
63403980 ACGCCACTAATGGTTATTATGTTTATATCAAAATGGTGTAG-TTTTATTGG
66 ACGCCACTAATGGTTATTATGTTTATATCAAAACGGTGTAGTTTTTA-TGG
* * * * * ** * *
63404030 ATTTTTAGTGGCATTTTAGGGTAAAATGCCGTAATAGTTTTGCCCTTAGCGGCGCTTGGAGATAA
1 ATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAGGATAT-A
* * * * * *
63404095 AACGCCACTAAAT-ATTATTCTGTTTATGTGAAAACGCCGTCGT-TTTTTTTTGG
65 AACGCCACT-AATGGTTATTATGTTTATATCAAAACG--GT-GTAGTTTTTATGG
* * *
63404148 ATTTTTAGTGGTGTTTTAGGGTT-AAACGCCGCAATAGATTTGCCTTTAGCGGCGCTAGG
1 ATTTTTAGTGGCGTTTTA-GGTTAAAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAGG
63404207 GTTTATTTTG
Statistics
Matches: 249, Mismatches: 32, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
113 6 0.02
114 136 0.55
115 15 0.06
116 28 0.11
117 3 0.01
118 52 0.21
119 9 0.04
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.38
Consensus pattern (115 bp):
ATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAGGATATAA
ACGCCACTAATGGTTATTATGTTTATATCAAAACGGTGTAGTTTTTATGG
Found at i:63404301 original size:97 final size:100
Alignment explanation
Indices: 63404109--63404303 Score: 263
Period size: 97 Copynumber: 2.0 Consensus size: 100
63404099 CCACTAAATA
* * * *
63404109 TTATTCTGTTTATGTGAAAACGCCGTCGTTTTTTTTTGGATTTTTAGTGGTGTTTTAGGGTTAAA
1 TTATTCTGTTTATATCAAAACGCCGTCGTTTTTGTTTGGATTTTTAGTGGCGTTTTAGGGTTAAA
63404174 CGCCGCAATAGATTTGCCTTTAGCGGCGCTAGGGT
66 CGCCGCAATAGATTTGCCTTTAGCGGCGCTAGGGT
* * *
63404209 TTATTTTGTTTATATCAAAACGGCGTCG-TTTTGTTTGG-TTTTTAGTGGCG-TTTA-TGTTAAA
1 TTATTCTGTTTATATCAAAACGCCGTCGTTTTTGTTTGGATTTTTAGTGGCGTTTTAGGGTT-AA
* * *
63404270 ATGCCGCAATTGGTTTGCCTTTAGCGGCGCTAGG
65 ACGCCGCAATAGATTTGCCTTTAGCGGCGCTAGG
63404304 AGAAAACACC
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
96 3 0.04
97 37 0.44
98 11 0.13
99 9 0.11
100 24 0.29
ACGTcount: A:0.18, C:0.14, G:0.26, T:0.43
Consensus pattern (100 bp):
TTATTCTGTTTATATCAAAACGCCGTCGTTTTTGTTTGGATTTTTAGTGGCGTTTTAGGGTTAAA
CGCCGCAATAGATTTGCCTTTAGCGGCGCTAGGGT
Found at i:63404504 original size:57 final size:58
Alignment explanation
Indices: 63404392--63404509 Score: 166
Period size: 57 Copynumber: 2.1 Consensus size: 58
63404382 ATTCATTTTC
** * * *
63404392 CCCCTTCTCCCTGGTTTATTTCCCCCATTTTCCCTACTTCGAATCCCTAAAATAATCA
1 CCCCTTCTCCCTAATTAATTTCCCCCATTTTCCCTAATTCGAAACCCTAAAATAATCA
* *
63404450 CCCCTTCTCCCTAATTAATTTCCCCC-TTTTCCCTAATTTGAAACCCTAAAATAATTA
1 CCCCTTCTCCCTAATTAATTTCCCCCATTTTCCCTAATTCGAAACCCTAAAATAATCA
63404507 CCC
1 CCC
63404510 TTTTTTTTCC
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 30 0.57
58 23 0.43
ACGTcount: A:0.24, C:0.37, G:0.03, T:0.36
Consensus pattern (58 bp):
CCCCTTCTCCCTAATTAATTTCCCCCATTTTCCCTAATTCGAAACCCTAAAATAATCA
Found at i:63407086 original size:19 final size:20
Alignment explanation
Indices: 63407052--63407090 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
63407042 GATATGATAC
*
63407052 TAAAATTATTTAAAAAAAAT
1 TAAAATTATATAAAAAAAAT
63407072 TAAAA-TATATAAAAAAAAT
1 TAAAATTATATAAAAAAAAT
63407091 CAGGGAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAAATTATATAAAAAAAAT
Found at i:63407403 original size:19 final size:19
Alignment explanation
Indices: 63407379--63407469 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
63407369 AATCTTATCT
63407379 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
63407398 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
63407416 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
63407433 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
63407452 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
63407470 TGAAAATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:63407435 original size:35 final size:37
Alignment explanation
Indices: 63407379--63407469 Score: 150
Period size: 35 Copynumber: 2.5 Consensus size: 37
63407369 AATCTTATCT
63407379 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCATA
63407416 TCTAAGATTG-TATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCATA
63407452 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
63407470 TGAAAATTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
35 19 0.37
36 16 0.31
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCATA
Found at i:63408698 original size:10 final size:9
Alignment explanation
Indices: 63408685--63408731 Score: 51
Period size: 10 Copynumber: 5.0 Consensus size: 9
63408675 TTTATATTTA
63408685 ATTTATCAAT
1 ATTT-TCAAT
*
63408695 ATTTTAAAT
1 ATTTTCAAT
63408704 ATATTTCAAT
1 AT-TTTCAAT
63408714 A-TTTCAAT
1 ATTTTCAAT
63408722 ATTTATCAAT
1 ATTT-TCAAT
63408732 TAATATAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
8 8 0.25
9 8 0.25
10 16 0.50
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (9 bp):
ATTTTCAAT
Found at i:63409040 original size:25 final size:23
Alignment explanation
Indices: 63409012--63409085 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 23
63409002 CATATTTTGG
63409012 ATTAATCAGGACACAATTTTTTTAA
1 ATTAATCA-GACACAA-TTTTTTAA
**
63409037 ATT-AT--GACACAAATTTTGCAA
1 ATTAATCAGACAC-AATTTTTTAA
*
63409058 TTTAATCACGACACAATTTTTTAA
1 ATTAATCA-GACACAATTTTTTAA
63409082 ATTA
1 ATTA
63409086 CATATTTTGG
Statistics
Matches: 38, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
21 13 0.34
22 4 0.11
24 13 0.34
25 8 0.21
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.39
Consensus pattern (23 bp):
ATTAATCAGACACAATTTTTTAA
Found at i:63409193 original size:9 final size:9
Alignment explanation
Indices: 63409181--63409211 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
63409171 ATATCATATA
63409181 ATAACTTAC
1 ATAACTTAC
63409190 ATAACTTAC
1 ATAACTTAC
*
63409199 AAAACTTAC
1 ATAACTTAC
63409208 ATAA
1 ATAA
63409212 TACATAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (9 bp):
ATAACTTAC
Found at i:63409232 original size:13 final size:13
Alignment explanation
Indices: 63409214--63409243 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
63409204 TTACATAATA
63409214 CATAAATATATAT
1 CATAAATATATAT
63409227 CATAAATATATAT
1 CATAAATATATAT
63409240 CATA
1 CATA
63409244 TCATAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (13 bp):
CATAAATATATAT
Found at i:63409277 original size:43 final size:43
Alignment explanation
Indices: 63409227--63409409 Score: 206
Period size: 43 Copynumber: 4.0 Consensus size: 43
63409217 AAATATATAT
*
63409227 CATAAATATATATCATATCATAACTTACACAACTAACATAATA
1 CATAAATATATATCATATCATAACTTACACAACTTACATAATA
63409270 CATAAATATATATCATAT-ACTAACTTACACAACTTACATAATA
1 CATAAATATATATCATATCA-TAACTTACACAACTTACATAATA
63409313 CATAAATATATATCGTAAATATATATCTTATCATAACTTACACAACTTACATAATA
1 CATAAATATATATC--------ATA---T--CATAACTTACACAACTTACATAATA
* *
63409369 CATAAATATATATCATATCATAACTTACATACCTTACATAA
1 CATAAATATATATCATATCATAACTTACACAACTTACATAA
63409410 ATGTATATCA
Statistics
Matches: 122, Mismatches: 3, Indels: 30
0.79 0.02 0.19
Matches are distributed among these distances:
42 1 0.01
43 75 0.61
45 1 0.01
48 3 0.02
51 3 0.02
54 1 0.01
56 37 0.30
57 1 0.01
ACGTcount: A:0.48, C:0.18, G:0.01, T:0.33
Consensus pattern (43 bp):
CATAAATATATATCATATCATAACTTACACAACTTACATAATA
Found at i:63409304 original size:99 final size:99
Alignment explanation
Indices: 63409189--63409409 Score: 372
Period size: 99 Copynumber: 2.2 Consensus size: 99
63409179 TAATAACTTA
63409189 CATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATATCATAACTTA
1 CATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATATCATAACTTA
63409254 CACAACTAACATAATACATAAATATATATCATAT
66 CACAACTAACATAATACATAAATATATATCATAT
* * *
63409288 -ACTAACTTACACAACTTACATAATACATAAATATATATCGTAAATATATATCTTATCATAACTT
1 CA-TAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATATCATAACTT
*
63409352 ACACAACTTACATAATACATAAATATATATCATAT
65 ACACAACTAACATAATACATAAATATATATCATAT
* *
63409387 CATAACTTACATACCTTACATAA
1 CATAACTTACAAAACTTACATAA
63409410 ATGTATATCA
Statistics
Matches: 114, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
98 1 0.01
99 112 0.98
100 1 0.01
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (99 bp):
CATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATATCATAACTTA
CACAACTAACATAATACATAAATATATATCATAT
Found at i:63409332 original size:56 final size:55
Alignment explanation
Indices: 63409272--63409382 Score: 188
Period size: 56 Copynumber: 2.0 Consensus size: 55
63409262 ACATAATACA
*
63409272 TAAATATATATCATAT-ACTAACTTACACAACTTACATAATACATAAATATATATC
1 TAAATATATATCTTATCA-TAACTTACACAACTTACATAATACATAAATATATATC
63409327 GTAAATATATATCTTATCATAACTTACACAACTTACATAATACATAAATATATATC
1 -TAAATATATATCTTATCATAACTTACACAACTTACATAATACATAAATATATATC
63409383 ATATCATAAC
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
56 52 0.98
57 1 0.02
ACGTcount: A:0.48, C:0.16, G:0.01, T:0.35
Consensus pattern (55 bp):
TAAATATATATCTTATCATAACTTACACAACTTACATAATACATAAATATATATC
Found at i:63409333 original size:13 final size:13
Alignment explanation
Indices: 63409315--63409339 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63409305 ACATAATACA
63409315 TAAATATATATCG
1 TAAATATATATCG
63409328 TAAATATATATC
1 TAAATATATATC
63409340 TTATCATAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (13 bp):
TAAATATATATCG
Found at i:63409399 original size:9 final size:9
Alignment explanation
Indices: 63409387--63409459 Score: 60
Period size: 9 Copynumber: 8.1 Consensus size: 9
63409377 TATATCATAT
63409387 CATAACTTA
1 CATAACTTA
*
63409396 CATACCTTA
1 CATAACTTA
*
63409405 CATAAATGTA
1 CATAACT-TA
* * *
63409415 TATCA-TAA
1 CATAACTTA
63409423 CATAACTTA
1 CATAACTTA
63409432 CATAACTTA
1 CATAACTTA
63409441 CA-AAGCTTA
1 CATAA-CTTA
*
63409450 CTTAACTTA
1 CATAACTTA
63409459 C
1 C
63409460 GTAATCCATA
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
8 6 0.12
9 37 0.74
10 7 0.14
ACGTcount: A:0.42, C:0.22, G:0.03, T:0.33
Consensus pattern (9 bp):
CATAACTTA
Found at i:63409417 original size:36 final size:36
Alignment explanation
Indices: 63409356--63409442 Score: 133
Period size: 36 Copynumber: 2.5 Consensus size: 36
63409346 TAACTTACAC
*
63409356 AACTTACATAA--TACATAAATATATATCATATCAT
1 AACTTACATAACTTACATAAATATATATCATAACAT
* *
63409390 AACTTACATACCTTACATAAATGTATATCATAACAT
1 AACTTACATAACTTACATAAATATATATCATAACAT
63409426 AACTTACATAACTTACA
1 AACTTACATAACTTACA
63409443 AAGCTTACTT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
34 10 0.21
36 37 0.79
ACGTcount: A:0.47, C:0.18, G:0.01, T:0.33
Consensus pattern (36 bp):
AACTTACATAACTTACATAAATATATATCATAACAT
Found at i:63414574 original size:13 final size:14
Alignment explanation
Indices: 63414558--63414586 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
63414548 TTATAAATAT
63414558 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
63414571 TTATAATGGTTTAA
1 TTATAATGGTTTAA
63414585 TT
1 TT
63414587 CATCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:63414996 original size:21 final size:21
Alignment explanation
Indices: 63414969--63415020 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
63414959 ACTTAGAGCG
*
63414969 GAGGCAGTAGAGAGGGAGACA
1 GAGGCAGCAGAGAGGGAGACA
* * *
63414990 GCGGCAGCAGCGAGGGAGGCA
1 GAGGCAGCAGAGAGGGAGACA
63415011 GAGGCAGCAG
1 GAGGCAGCAG
63415021 TGATTGCAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.17, G:0.50, T:0.02
Consensus pattern (21 bp):
GAGGCAGCAGAGAGGGAGACA
Found at i:63415310 original size:31 final size:31
Alignment explanation
Indices: 63415274--63415339 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
63415264 TGTATTTTTT
* *
63415274 ATGCTACATTTGCTGTTTTTAGTTGGATTTC
1 ATGCTACATTTGCTGCTTTTAGTTGGATTTA
* *
63415305 ATGCTATATTTGCTGCTTTTGGTTGGATTTA
1 ATGCTACATTTGCTGCTTTTAGTTGGATTTA
63415336 ATGC
1 ATGC
63415340 AGGAAATGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.21, T:0.50
Consensus pattern (31 bp):
ATGCTACATTTGCTGCTTTTAGTTGGATTTA
Found at i:63427812 original size:22 final size:23
Alignment explanation
Indices: 63427781--63427842 Score: 94
Period size: 22 Copynumber: 2.8 Consensus size: 23
63427771 TTTGTAGGCA
*
63427781 AGTGGAGTGGTTGGGA-TGGTTT
1 AGTGGGGTGGTTGGGAGTGGTTT
63427803 AGTGGGGTGGTT-GGAGTGGTTT
1 AGTGGGGTGGTTGGGAGTGGTTT
63427825 AGTGGGGTGGTT-GGAGTG
1 AGTGGGGTGGTTGGGAGTG
63427843 AAGATATTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
21 3 0.08
22 35 0.92
ACGTcount: A:0.11, C:0.00, G:0.55, T:0.34
Consensus pattern (23 bp):
AGTGGGGTGGTTGGGAGTGGTTT
Found at i:63428687 original size:206 final size:206
Alignment explanation
Indices: 63428333--63429416 Score: 1954
Period size: 206 Copynumber: 5.3 Consensus size: 206
63428323 CAAATCTGCT
* * *
63428333 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCGGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
* * *
63428398 ATCTGAAAGCCAGATTTGCTATGTATCTGCCCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
*
63428463 TTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
*
63428528 AATCAGCTATA
196 AATCAGCTATG
* *
63428539 TCTTCGATTTGCTCATTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
*
63428604 ATCTGAAGGCCAGATCTGCTATGTATCTGTTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
63428669 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
63428734 AATCAGCTATG
196 AATCAGCTATG
*
63428745 TCTTTGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
*
63428810 ATCTGAGGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
*
63428875 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCATGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
63428940 AATCAGCTATG
196 AATCAGCTATG
*
63428951 TCTTTGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
* *
63429016 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCTGTCGAAATGGAGATGCCAGACTTTGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
*
63429081 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGTGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
63429146 AATCAGCTATG
196 AATCAGCTATG
*
63429157 TCTTTGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
*
63429222 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGTTGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
*
63429287 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCTTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
63429352 AATCAGCTATG
196 AATCAGCTATG
* *
63429363 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC-TGCTT
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTT
63429417 TAGCCAGATC
Statistics
Matches: 850, Mismatches: 28, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
205 5 0.01
206 845 0.99
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (206 bp):
TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
AATCAGCTATG
Found at i:63431449 original size:43 final size:43
Alignment explanation
Indices: 63431349--63431479 Score: 198
Period size: 41 Copynumber: 3.1 Consensus size: 43
63431339 CTGGCATTAC
*
63431349 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGG--CGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
63431390 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
* * *
63431433 GCCTGCTAGGCACGAAGGCCCGAATATA-AT-ACCAGCACTAG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
63431474 GCCTGC
1 GCCTGC
63431480 GGGATTTATC
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
41 52 0.62
42 2 0.02
43 30 0.36
ACGTcount: A:0.29, C:0.34, G:0.25, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
Found at i:63436266 original size:46 final size:46
Alignment explanation
Indices: 63436214--63436430 Score: 301
Period size: 46 Copynumber: 4.7 Consensus size: 46
63436204 TGAAATGTGC
* * *
63436214 AAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAACGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAT
**
63436260 AAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAT
* * *
63436306 AAGACCATGGTTGAAAGATACCGTGGCAACGTGACATGAAAAGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAT
*
63436352 AAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAAT
* * * *
63436398 AAGACCATAGTTGAAAGACACTATGGCATCATG
1 AAGACCATGGTTGAAAGATACCATGGCAACATG
63436431 TCAAAGATAA
Statistics
Matches: 152, Mismatches: 18, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 1 0.01
46 151 0.99
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.18
Consensus pattern (46 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAAT
Found at i:63436362 original size:92 final size:92
Alignment explanation
Indices: 63436214--63436425 Score: 343
Period size: 92 Copynumber: 2.3 Consensus size: 92
63436204 TGAAATGTGC
* *
63436214 AAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAACGAATAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGAT
* *
63436279 ACCATGGCAACATGACGGGAAATGAAT
66 ACCATGGCAACATGACAGAAAATGAAT
*
63436306 AAGACCATGGTTGAAAGATACCGTGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGAT
*
63436371 ACCATGGCAACATGACAGAAAATGAGT
66 ACCATGGCAACATGACAGAAAATGAAT
* * *
63436398 AAGACCATAGTTGAAAGACACTATGGCA
1 AAGACCATGGTTGAAAGATACCATGGCA
63436426 TCATGTCAAA
Statistics
Matches: 110, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 110 1.00
ACGTcount: A:0.42, C:0.16, G:0.25, T:0.18
Consensus pattern (92 bp):
AAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGAT
ACCATGGCAACATGACAGAAAATGAAT
Found at i:63441690 original size:13 final size:13
Alignment explanation
Indices: 63441672--63441697 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63441662 TTTCCAGCAA
63441672 TTATGAATTTATT
1 TTATGAATTTATT
63441685 TTATGAATTTATT
1 TTATGAATTTATT
63441698 GATGATGATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:63441922 original size:47 final size:49
Alignment explanation
Indices: 63441798--63442030 Score: 214
Period size: 48 Copynumber: 4.7 Consensus size: 49
63441788 ATTTGGGTAA
* *
63441798 AGAGATCCCATGTAAGACCATG-CTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCA-TGGCA-CC--GAGA-C--G
*
63441853 AGAGGTCCCCTGTAAGACCATGTCTGGGACAT-GCATGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGCACCGAGACG
*
63441901 AGAGGT-CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGA--
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGC-ATGGCACCGAGACG
* * * *
63441948 TGAGGTCCCCTATAAGACCATGTCT-GGAC-TGGCATGGGC-CC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCAT-GGCACCGA-GACG
**
63441995 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
63442031 TTTGGCATGT
Statistics
Matches: 152, Mismatches: 15, Indels: 27
0.78 0.08 0.14
Matches are distributed among these distances:
44 1 0.01
45 4 0.03
46 7 0.05
47 34 0.22
48 44 0.29
49 15 0.10
50 5 0.03
51 3 0.02
53 2 0.01
54 5 0.03
55 23 0.15
56 9 0.06
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (49 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGCACCGAGACG
Found at i:63449007 original size:29 final size:30
Alignment explanation
Indices: 63448948--63449005 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
63448938 TCCGAGCCTT
*
63448948 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
63448978 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
63449006 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:63449235 original size:13 final size:13
Alignment explanation
Indices: 63449217--63449248 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
63449207 TTTCCAGCAA
63449217 TTATGAATTTATT
1 TTATGAATTTATT
63449230 TTATGAATTTATT
1 TTATGAATTTATT
*
63449243 TGATGA
1 TTATGA
63449249 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:63460206 original size:33 final size:38
Alignment explanation
Indices: 63460166--63460247 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
63460156 GTAAAAACAC
63460166 AATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
63460199 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
*
63460238 AATAATAATA
1 AATAGTAATA
63460248 GAAAATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 1 0.02
37 7 0.17
38 4 0.10
39 11 0.27
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.34
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:63460256 original size:19 final size:18
Alignment explanation
Indices: 63460232--63460273 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
63460222 TGGTATTAGT
*
63460232 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
63460251 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
63460269 AATAA
1 AATAA
63460274 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:63460539 original size:22 final size:22
Alignment explanation
Indices: 63460511--63460569 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
63460501 TAGGCAAATG
*
63460511 GGGTGGTTGGGGTGATTTAGTA
1 GGGTGGTTGGAGTGATTTAGTA
* *
63460533 GGGTGGTTGGAGTGGTTTAGTG
1 GGGTGGTTGGAGTGATTTAGTA
63460555 GGGTGGTTGGAGTGA
1 GGGTGGTTGGAGTGA
63460570 AGATATTTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.12, C:0.00, G:0.54, T:0.34
Consensus pattern (22 bp):
GGGTGGTTGGAGTGATTTAGTA
Found at i:63461692 original size:5 final size:5
Alignment explanation
Indices: 63461682--63461708 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
63461672 TTATATAAAT
63461682 TTTAA TTTAA TTTAA TTTAA TTTAA TT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TT
63461709 ATTATATGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TTTAA
Found at i:63463836 original size:15 final size:15
Alignment explanation
Indices: 63463816--63463845 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63463806 AAAATTGTCT
63463816 GGTTTTAAGACATCC
1 GGTTTTAAGACATCC
63463831 GGTTTTAAGACATCC
1 GGTTTTAAGACATCC
63463846 TCCACACTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (15 bp):
GGTTTTAAGACATCC
Found at i:63479623 original size:18 final size:18
Alignment explanation
Indices: 63479587--63479630 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
63479577 TAATTTATAA
63479587 ATAAATTTTATCTAATAT
1 ATAAATTTTATCTAATAT
* *
63479605 A-AAATTGTTATTTATTAT
1 ATAAATT-TTATCTAATAT
63479623 ATAAATTT
1 ATAAATTT
63479631 ATTTAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 5 0.23
18 12 0.55
19 5 0.23
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (18 bp):
ATAAATTTTATCTAATAT
Found at i:63485221 original size:11 final size:11
Alignment explanation
Indices: 63485205--63485230 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63485195 AATACATCAA
63485205 AAAATAAATTT
1 AAAATAAATTT
63485216 AAAATAAATTT
1 AAAATAAATTT
63485227 AAAA
1 AAAA
63485231 AATATGCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
AAAATAAATTT
Found at i:63489658 original size:49 final size:51
Alignment explanation
Indices: 63489603--63489700 Score: 137
Period size: 49 Copynumber: 2.0 Consensus size: 51
63489593 CTTGGATATA
* * *
63489603 GTTGGAGTTAACATTAATCTTT-T-TGTATGAAAAAACAGAGGGCCAAAGT
1 GTTGGAGTCAACATTAATCTTTCTATGCATGAAAAAACAGAGGCCCAAAGT
* *
63489652 GTTGGAGTCAACATTAATCTTTCTATGCGTGAAAAAACAGTGGCCCAAA
1 GTTGGAGTCAACATTAATCTTTCTATGCATGAAAAAACAGAGGCCCAAA
63489701 TATAACTATA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
49 21 0.50
50 1 0.02
51 20 0.48
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (51 bp):
GTTGGAGTCAACATTAATCTTTCTATGCATGAAAAAACAGAGGCCCAAAGT
Found at i:63498672 original size:19 final size:17
Alignment explanation
Indices: 63498650--63498693 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
63498640 TAACAACATA
63498650 AATAATAAAATGAAATTAC
1 AATAATAAAATG-AA-TAC
**
63498669 AATAATATGATGAATAC
1 AATAATAAAATGAATAC
63498686 AATAATAA
1 AATAATAA
63498694 TAAATAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 10 0.45
18 2 0.09
19 10 0.45
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.27
Consensus pattern (17 bp):
AATAATAAAATGAATAC
Found at i:63505369 original size:50 final size:50
Alignment explanation
Indices: 63505245--63505493 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
63505235 GATAATAACA
* * ** * *
63505245 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
63505296 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
63505346 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
63505396 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
63505451 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
63505494 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:63505423 original size:100 final size:104
Alignment explanation
Indices: 63505244--63505493 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
63505234 TGATAATAAC
**
63505244 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
63505309 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
63505346 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
63505409 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
63505451 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
63505494 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:63505609 original size:13 final size:13
Alignment explanation
Indices: 63505588--63505619 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
63505578 GCTTGGATCA
*
63505588 TCATCAAATAAAT
1 TCATAAAATAAAT
63505601 TCATAAAATAAAT
1 TCATAAAATAAAT
63505614 TCATAA
1 TCATAA
63505620 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:63505866 original size:30 final size:30
Alignment explanation
Indices: 63505831--63505888 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
63505821 CCTCGACTCT
*
63505831 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
63505861 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
63505889 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:63511098 original size:16 final size:17
Alignment explanation
Indices: 63511067--63511099 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
63511057 TTCATAAGTA
63511067 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
63511084 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
63511100 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:63511535 original size:25 final size:25
Alignment explanation
Indices: 63511507--63511582 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
63511497 GTCTTACACA
63511507 TTTCATATCATGTTGCCATGGTATC
1 TTTCATATCATGTTGCCATGGTATC
* * * *
63511532 TTTCA-ACCATG--GTC-TTGCA-C
1 TTTCATATCATGTTGCCATGGTATC
63511552 GTTTCATATCATGTTGCCATGGTATC
1 -TTTCATATCATGTTGCCATGGTATC
63511578 TTTCA
1 TTTCA
63511583 ATCTTTCAAC
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 1 0.03
21 8 0.22
22 7 0.19
24 7 0.19
25 13 0.35
26 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.42
Consensus pattern (25 bp):
TTTCATATCATGTTGCCATGGTATC
Found at i:63511611 original size:54 final size:54
Alignment explanation
Indices: 63511529--63511637 Score: 182
Period size: 54 Copynumber: 2.0 Consensus size: 54
63511519 TTGCCATGGT
* * *
63511529 ATCTTTCAACCATGGTCTTGCACGTTTCATATCATGTTGCCATGGTATCTTTCA
1 ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCA
*
63511583 ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCTATGGTATCTTTCA
1 ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCA
63511637 A
1 A
63511638 CCATGGTCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (54 bp):
ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCA
Found at i:63511656 original size:46 final size:46
Alignment explanation
Indices: 63511377--63511658 Score: 332
Period size: 46 Copynumber: 6.0 Consensus size: 46
63511367 TATTTATCGA
* * * * * *
63511377 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
** ***
63511423 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
63511469 CATGTTGCTATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
63511515 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGCACGTTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
63511561 CATGTTGCCATGGTATCTTTCAATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGG------T--ATCTTTCAACCATGGTCTTACACATTTCATAT
* *
63511615 CACGTTGCTATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
63511659 TTCAAAGAGC
Statistics
Matches: 208, Mismatches: 19, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
45 4 0.02
46 161 0.77
48 1 0.00
52 1 0.00
54 41 0.20
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Done.