Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 211 of 250
Found at i:65759720 original size:17 final size:17
Alignment explanation
Indices: 65759705--65759741 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
65759695 GTAAATAATT
65759705 AAATTAACTAATTAATCA
1 AAATTAA-TAATTAATCA
65759723 AAATTAATAA-TAAT-A
1 AAATTAATAATTAATCA
65759738 AAAT
1 AAAT
65759742 ATTATAAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 5 0.26
16 4 0.21
17 3 0.16
18 7 0.37
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (17 bp):
AAATTAATAATTAATCA
Found at i:65766958 original size:21 final size:21
Alignment explanation
Indices: 65766932--65767006 Score: 80
Period size: 21 Copynumber: 3.4 Consensus size: 21
65766922 TCAGATATTA
65766932 TTATTATCATTACTATTTTCG
1 TTATTATCATTACTATTTTCG
* *
65766953 TTATTATTCTTATTACTATTTACA
1 TTATTA-TC--ATTACTATTTTCG
*
65766977 TTATTATTATTACTA-TTTCTG
1 TTATTATCATTACTATTTTC-G
65766998 TTATTATCA
1 TTATTATCA
65767007 CTTTTACTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
20 3 0.07
21 21 0.48
22 2 0.05
23 1 0.02
24 17 0.39
ACGTcount: A:0.27, C:0.12, G:0.03, T:0.59
Consensus pattern (21 bp):
TTATTATCATTACTATTTTCG
Found at i:65766967 original size:24 final size:24
Alignment explanation
Indices: 65766929--65767004 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 24
65766919 CTATCAGATA
*
65766929 TTATTATTATCATTACTATTTTCG
1 TTATTATTATTATTACTATTTTCG
* *
65766953 TTATTATTCTTATTACTATTTAC-
1 TTATTATTATTATTACTATTTTCG
65766976 --ATTATTATTATTACTA-TTTCTG
1 TTATTATTATTATTACTATTTTC-G
65766998 TTATTAT
1 TTATTAT
65767005 CACTTTTACT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
20 3 0.07
21 15 0.35
24 25 0.58
ACGTcount: A:0.26, C:0.11, G:0.03, T:0.61
Consensus pattern (24 bp):
TTATTATTATTATTACTATTTTCG
Found at i:65767030 original size:26 final size:26
Alignment explanation
Indices: 65766999--65767049 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 26
65766989 CTATTTCTGT
65766999 TATTATCACTTTTACTA-ATTTTTTCC
1 TATTATCA-TTTTACTACATTTTTTCC
*
65767025 TATTATTATTTTACTATCATTTTTT
1 TATTATCATTTTACTA-CATTTTTT
65767050 TAATACTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 8 0.36
26 7 0.32
27 7 0.32
ACGTcount: A:0.24, C:0.14, G:0.00, T:0.63
Consensus pattern (26 bp):
TATTATCATTTTACTACATTTTTTCC
Found at i:65767638 original size:125 final size:126
Alignment explanation
Indices: 65767399--65767656 Score: 290
Period size: 125 Copynumber: 2.0 Consensus size: 126
65767389 AACATAAGGA
* * *
65767399 AATATTTCGTGTTTGGAAGTTGAGAGATCGGGCCCAATCATACTGGGTTTCGATTTTTTTTCATT
1 AATATTTCGTGTTTGGAAGTTGAAAGATCAGGCCCAATCATACTGGGTTTCGA-TATTTTTCATT
* ** * * *
65767464 CAACTGAAATATGGAATACCCTTGTGAAATTTCGCCTACGTTTTCTTAAATTAAAACGAGGT
65 CAACTAAAATACAGAATACCATTGTGAAATTTCACCTACGTTTTCTTAAATTAAAACGAGGC
* * * *
65767526 AATATTTTGTGTTTGGGAGTTTGAAAGATCATGCCCAATCATGCTGGGTTTC-A-ATTTTTCATT
1 AATATTTCGTGTTTGGAAG-TTGAAAGATCAGGCCCAATCATACTGGGTTTCGATATTTTTCATT
* * * * *
65767589 CGAC-AAAAGTACAGAATATCCATT-TGAAATTTCATCTATGTTTTTTTAAATTAAAATGAGGC
65 CAACTAAAA-TACAGAATA-CCATTGTGAAATTTCACCTACGTTTTCTTAAATTAAAACGAGGC
65767651 AATATT
1 AATATT
65767657 CCGTATTTAG
Statistics
Matches: 110, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
124 3 0.03
125 57 0.52
126 4 0.04
127 18 0.16
128 28 0.25
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (126 bp):
AATATTTCGTGTTTGGAAGTTGAAAGATCAGGCCCAATCATACTGGGTTTCGATATTTTTCATTC
AACTAAAATACAGAATACCATTGTGAAATTTCACCTACGTTTTCTTAAATTAAAACGAGGC
Found at i:65768637 original size:17 final size:17
Alignment explanation
Indices: 65768615--65768649 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
65768605 TCTCTCTCTC
* *
65768615 TTTTTTCTTTTTTCCTT
1 TTTTTTCCTTCTTCCTT
65768632 TTTTTTCCTTCTTCCTT
1 TTTTTTCCTTCTTCCTT
65768649 T
1 T
65768650 ATAATGTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTTCCTTCTTCCTT
Found at i:65769627 original size:6 final size:6
Alignment explanation
Indices: 65769616--65769644 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
65769606 ATTATGTGTA
65769616 AATTTT AATTTT AATTTT AATTTT AATTT
1 AATTTT AATTTT AATTTT AATTTT AATTT
65769645 ATTTTAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
AATTTT
Found at i:65777033 original size:16 final size:15
Alignment explanation
Indices: 65777007--65777041 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
65776997 TGATGTGAAT
65777007 AATATAAAATATTAA
1 AATATAAAATATTAA
*
65777022 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
65777038 AATA
1 AATA
65777042 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:65777226 original size:20 final size:21
Alignment explanation
Indices: 65777184--65777226 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
65777174 CCCTTTTTAG
* *
65777184 AATAATAATTAAATATACGAA
1 AATAATAATTAAATACACAAA
*
65777205 AATAAT-ATTATATACACAAA
1 AATAATAATTAAATACACAAA
65777225 AA
1 AA
65777227 GGTATATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (21 bp):
AATAATAATTAAATACACAAA
Found at i:65777398 original size:21 final size:23
Alignment explanation
Indices: 65777356--65777398 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
65777346 AGTATTTCGG
*
65777356 AGTATGTACATGAGACAATATAA
1 AGTATATACATGAGACAATATAA
65777379 AGTATATACATG-GA-AATATA
1 AGTATATACATGAGACAATATA
65777399 CAAGAAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 2 0.11
23 11 0.58
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.28
Consensus pattern (23 bp):
AGTATATACATGAGACAATATAA
Found at i:65777409 original size:23 final size:23
Alignment explanation
Indices: 65777362--65777411 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
65777352 TCGGAGTATG
*
65777362 TACATGAGACAATATAAAGTATA
1 TACATGAGACAATATAAAGAATA
65777385 TACATG-GA-AATATACAAGAAGTA
1 TACATGAGACAATATA-AAGAA-TA
65777408 TACA
1 TACA
65777412 ACTAATAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.25
22 6 0.25
23 12 0.50
ACGTcount: A:0.52, C:0.10, G:0.14, T:0.24
Consensus pattern (23 bp):
TACATGAGACAATATAAAGAATA
Found at i:65777443 original size:11 final size:11
Alignment explanation
Indices: 65777427--65777456 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
65777417 TAACATTAAG
65777427 AATATATATAT
1 AATATATATAT
*
65777438 AATATAAATAT
1 AATATATATAT
65777449 AATATATA
1 AATATATA
65777457 CAATATATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:65777652 original size:18 final size:19
Alignment explanation
Indices: 65777618--65777653 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
65777608 ATATATAGCT
*
65777618 AAATATAATATAATAATAA
1 AAATATAATAAAATAATAA
65777637 AAATAT-ATAAAATAATA
1 AAATATAATAAAATAATA
65777654 GTGATAACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AAATATAATAAAATAATAA
Found at i:65777974 original size:14 final size:14
Alignment explanation
Indices: 65777918--65777974 Score: 55
Period size: 14 Copynumber: 4.0 Consensus size: 14
65777908 AATAGATTCG
65777918 AAAAAAGGA-AAAA-
1 AAAAAA-GATAAAAT
*
65777931 AAATAAAAATAAAAT
1 AAA-AAAGATAAAAT
65777946 AAAAAAGAGTAAAAT
1 AAAAAAGA-TAAAAT
*
65777961 AAAGAAGATAAAAT
1 AAAAAAGATAAAAT
65777975 CACCTTTAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 4 0.11
14 17 0.46
15 16 0.43
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.12
Consensus pattern (14 bp):
AAAAAAGATAAAAT
Found at i:65778231 original size:28 final size:26
Alignment explanation
Indices: 65778191--65778272 Score: 132
Period size: 27 Copynumber: 3.2 Consensus size: 26
65778181 AGTTTCTTGG
65778191 TTTTTTTT-GGGGGGTTAGGTTTTTC
1 TTTTTTTTGGGGGGGTTAGGTTTTTC
65778216 TTTTTTTTGGGGGGGGTTAGGTTTTTTC
1 TTTTTTTT-GGGGGGGTTAGG-TTTTTC
65778244 TTTTTTTTGGGGGGGTTAGGTTTTT-
1 TTTTTTTTGGGGGGGTTAGGTTTTTC
65778269 TTTT
1 TTTT
65778273 GGGGAGGGCT
Statistics
Matches: 54, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
25 12 0.22
26 5 0.09
27 23 0.43
28 14 0.26
ACGTcount: A:0.04, C:0.02, G:0.33, T:0.61
Consensus pattern (26 bp):
TTTTTTTTGGGGGGGTTAGGTTTTTC
Found at i:65779218 original size:72 final size:72
Alignment explanation
Indices: 65779130--65779751 Score: 886
Period size: 72 Copynumber: 8.5 Consensus size: 72
65779120 GTGATTTGAA
65779130 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
65779195 TCCCGAG
66 TCCTGAG
* *
65779202 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAAATTGAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-AAAAC-AGAAATTGAAATTACCTCAG
* *
65779267 CATGTCTTGAG
62 CGTGTCCTGAG
** *
65779278 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
65779343 TCCTGAA
66 TCCTGAG
* * *
65779350 GCTCAACACA-TTCCTCGCAATATGAGTTGATTTTTTTAACAACAGAAATTGAAATTACCTCAGC
1 GCTCAACTCACCT-CTCGCAATATGAGTTGA-TTTTTGAA-AACAGAAATTGAAATTACCTCAGC
65779414 GTGTCCTGAG
63 GTGTCCTGAG
* * * * * *
65779424 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGAAAGATAAAAATTAAAAATACCTCAAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAATTACCTCAGC
*
65779489 GTGTCTTGAG
63 GTGTCCTGAG
** *
65779499 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
65779564 TCCCGAG
66 TCCTGAG
*
65779571 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
65779636 TCCCGAG
66 TCCTGAG
*
65779643 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAATTACCTCAGCG
65779708 TGTCCTGAG
64 TGTCCTGAG
*
65779717 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
65779752 TTTGAAACAG
Statistics
Matches: 492, Mismatches: 46, Indels: 24
0.88 0.08 0.04
Matches are distributed among these distances:
71 2 0.00
72 211 0.43
73 19 0.04
74 138 0.28
75 68 0.14
76 54 0.11
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (72 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
TCCTGAG
Found at i:65779629 original size:293 final size:295
Alignment explanation
Indices: 65779130--65779770 Score: 956
Period size: 293 Copynumber: 2.2 Consensus size: 295
65779120 GTGATTTGAA
* * * * *
65779130 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAATTACCTCAGCG
1 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGAAAACAAAAATTAAAAATACCTCAACG
*
65779193 TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAAATTGAAA
66 TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TATTTTGAAAAACAAAAAATTGAAA
** **
65779258 ATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA
130 ATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAA
* * *
65779323 ATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACACA-TTCCTCGCAATATGAGTTGATTTTTTT
195 ATTGAAATTACCTCAGCGTCTCCCGAAGCTCAACACACCT-CTCGCAATATGAGTTGATTTTTTT
65779387 AACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
259 AACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
*
65779424 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGAAAGATAAAAATTAAAAATACCTCAAC
1 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGAAA-ACAAAAATTAAAAATACCTCAAC
** ** *
65779489 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTG-AAAAC-AGAAATTGAAA
65 GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTGAAAAACAAAAAATTGAAA
* * *
65779551 TTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAA
130 ATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAA
* * *
65779616 ATTGAAATTACCTCAGCGTCTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
195 ATTGAAATTACCTCAGCGTCTCCCGAAGCTCAACACACCTCTCGCAATATGAGTTGATTTTTTTA
65779681 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
260 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
*
65779717 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTTG-AAACAGAAA-TAAAAA
1 GCTCAACTCACCTCTCGCAGTATGAGTTGA-TTTTTTTGAAAACAAAAATTAAAAA
65779771 CATCAAAATA
Statistics
Matches: 315, Mismatches: 27, Indels: 13
0.89 0.08 0.04
Matches are distributed among these distances:
291 6 0.02
292 5 0.02
293 193 0.61
294 43 0.14
295 5 0.02
296 9 0.03
297 54 0.17
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (295 bp):
GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGAAAACAAAAATTAAAAATACCTCAACG
TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTGAAAAACAAAAAATTGAAAA
TACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAA
TTGAAATTACCTCAGCGTCTCCCGAAGCTCAACACACCTCTCGCAATATGAGTTGATTTTTTTAA
CAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
Found at i:65791686 original size:16 final size:15
Alignment explanation
Indices: 65791660--65791694 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
65791650 TGATGTGAAT
65791660 AATATAAAATATTAA
1 AATATAAAATATTAA
*
65791675 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
65791691 AATA
1 AATA
65791695 ATAATTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:65791877 original size:20 final size:21
Alignment explanation
Indices: 65791835--65791877 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
65791825 CCTTTTTTAG
* *
65791835 AATAATAATTAAATATACGAA
1 AATAATAATTAAATACACAAA
*
65791856 AATAAT-ATTATATACACAAA
1 AATAATAATTAAATACACAAA
65791876 AA
1 AA
65791878 GGTATATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (21 bp):
AATAATAATTAAATACACAAA
Found at i:65792049 original size:21 final size:23
Alignment explanation
Indices: 65792007--65792049 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
65791997 AGTATTTCGG
*
65792007 AGTATGTACATGAGACAATATAA
1 AGTATATACATGAGACAATATAA
65792030 AGTATATACAT-AGA-AATATA
1 AGTATATACATGAGACAATATA
65792050 CAAGAAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 3 0.16
23 10 0.53
ACGTcount: A:0.51, C:0.07, G:0.14, T:0.28
Consensus pattern (23 bp):
AGTATATACATGAGACAATATAA
Found at i:65792060 original size:23 final size:23
Alignment explanation
Indices: 65792013--65792062 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
65792003 TCGGAGTATG
*
65792013 TACATGAGACAATATAAAGTATA
1 TACATGAGACAATATAAAGAATA
65792036 TACAT-AGA-AATATACAAGAAGTA
1 TACATGAGACAATATA-AAGAA-TA
65792059 TACA
1 TACA
65792063 ACTAATAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.25
22 7 0.29
23 11 0.46
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.24
Consensus pattern (23 bp):
TACATGAGACAATATAAAGAATA
Found at i:65792561 original size:13 final size:13
Alignment explanation
Indices: 65792545--65792569 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65792535 AAAAAGGAAA
65792545 AAAAATAAAAAAT
1 AAAAATAAAAAAT
65792558 AAAAATAAAAAA
1 AAAAATAAAAAA
65792570 AGAGTAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:65792850 original size:25 final size:26
Alignment explanation
Indices: 65792822--65792870 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
65792812 TTTTTTTGGG
65792822 GGGTTAGG-TTTTTCTTTTTTTTTTT
1 GGGTTAGGTTTTTTCTTTTTTTTTTT
65792847 GGGTTAGGTTTTTTCTTTTTTTTT
1 GGGTTAGGTTTTTTCTTTTTTTTT
65792871 GGGGGAGGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.04, C:0.04, G:0.20, T:0.71
Consensus pattern (26 bp):
GGGTTAGGTTTTTTCTTTTTTTTTTT
Found at i:65796942 original size:33 final size:33
Alignment explanation
Indices: 65796905--65796972 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
65796895 GATTAATTCT
* *
65796905 ATATTTTATGTATCATTATATTAAATTATTTAA
1 ATATTTCATATATCATTATATTAAATTATTTAA
* *
65796938 ATATTTCATATCTCTTTATATTAAATTATTTAA
1 ATATTTCATATATCATTATATTAAATTATTTAA
65796971 AT
1 AT
65796973 TTTATTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.54
Consensus pattern (33 bp):
ATATTTCATATATCATTATATTAAATTATTTAA
Found at i:65797046 original size:25 final size:25
Alignment explanation
Indices: 65797014--65797078 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 25
65797004 TTTATATAGC
*
65797014 ATTAATTTTAAAAATAATTTATATTA
1 ATTATTTTTAAAAA-AATTTATATTA
* *
65797040 ATTATTTTTTATAAAATTTATATTA
1 ATTATTTTTAAAAAAATTTATATTA
65797065 ATTACTATTTTAAA
1 ATTA-T-TTTTAAA
65797079 TTTATATTCC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 15 0.47
26 12 0.38
27 5 0.16
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (25 bp):
ATTATTTTTAAAAAAATTTATATTA
Found at i:65797083 original size:23 final size:25
Alignment explanation
Indices: 65797029--65797086 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
65797019 TTTTAAAAAT
* *
65797029 AATTTATATTAATTATTTTTTATAA
1 AATTTATATTAATTACTATTTATAA
65797054 AATTTATATTAATTACTATTT-T-A
1 AATTTATATTAATTACTATTTATAA
65797077 AATTTATATT
1 AATTTATATT
65797087 CCATGCATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 11 0.35
24 1 0.03
25 19 0.61
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (25 bp):
AATTTATATTAATTACTATTTATAA
Found at i:65797509 original size:13 final size:13
Alignment explanation
Indices: 65797491--65797516 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65797481 ACTTTGCCCC
65797491 CTAAAATTATAAA
1 CTAAAATTATAAA
65797504 CTAAAATTATAAA
1 CTAAAATTATAAA
65797517 AATTTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
CTAAAATTATAAA
Found at i:65799887 original size:8 final size:8
Alignment explanation
Indices: 65799870--65799906 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
65799860 TTCTTACTGA
65799870 TTTTTA-T
1 TTTTTATT
65799877 TTTTTATT
1 TTTTTATT
65799885 TTTTTATT
1 TTTTTATT
65799893 TTTTTATT
1 TTTTTATT
65799901 ATTTTT
1 -TTTTT
65799907 TATAAGTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 6 0.21
8 17 0.61
9 5 0.18
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (8 bp):
TTTTTATT
Found at i:65800178 original size:17 final size:16
Alignment explanation
Indices: 65800144--65800181 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
65800134 TATCATATGT
65800144 ATATAAATATAAAAAA
1 ATATAAATATAAAAAA
65800160 ATATAAA-ATAGAAATAA
1 ATATAAATATA-AAA-AA
65800177 ATATA
1 ATATA
65800182 TAAAGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 3 0.15
16 10 0.50
17 7 0.35
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (16 bp):
ATATAAATATAAAAAA
Found at i:65800191 original size:17 final size:18
Alignment explanation
Indices: 65800143--65800185 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
65800133 TTATCATATG
* *
65800143 TATATAAATATAAAAAAA
1 TATATAAATAGAAATAAA
65800161 TATA-AAATAGAAATAAA
1 TATATAAATAGAAATAAA
65800178 TATATAAA
1 TATATAAA
65800186 GAAAATTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (18 bp):
TATATAAATAGAAATAAA
Found at i:65800205 original size:29 final size:28
Alignment explanation
Indices: 65800143--65800205 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 28
65800133 TTATCATATG
65800143 TATAT-AAATATAAAAAAATATAAAATA
1 TATATAAAATATAAAAAAATATAAAATA
* * *
65800170 GAAATAAATATATAAAGAAAAT-TCAAATA
1 TATATAAA-ATATAAA-AAAATATAAAATA
65800199 TATATAA
1 TATATAA
65800206 TCTAGGGATA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
27 3 0.11
28 2 0.07
29 18 0.64
30 5 0.18
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.29
Consensus pattern (28 bp):
TATATAAAATATAAAAAAATATAAAATA
Found at i:65800581 original size:19 final size:21
Alignment explanation
Indices: 65800550--65800598 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
65800540 TAAACTTTTT
65800550 TATATTT-AAAAAA-TT-ATA
1 TATATTTAAAAAAATTTAATA
*
65800568 TATTTTTAAAAAAATTTAATA
1 TATATTTAAAAAAATTTAATA
65800589 TATATTTAAA
1 TATATTTAAA
65800599 TTTTTAGATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 6 0.23
19 6 0.23
20 2 0.08
21 12 0.46
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TATATTTAAAAAAATTTAATA
Found at i:65808822 original size:50 final size:50
Alignment explanation
Indices: 65808707--65808899 Score: 296
Period size: 50 Copynumber: 3.8 Consensus size: 50
65808697 GATAATAACA
* ** * *
65808707 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
65808758 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
65808808 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
65808858 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
65808900 TTACCCAAAT
Statistics
Matches: 129, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 96 0.74
51 33 0.26
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:65809015 original size:13 final size:13
Alignment explanation
Indices: 65808994--65809024 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
65808984 GCTTAGATCA
*
65808994 TCATCAAATAAAT
1 TCATAAAATAAAT
65809007 TCATAAAATAAAT
1 TCATAAAATAAAT
65809020 TCATA
1 TCATA
65809025 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:65809272 original size:30 final size:30
Alignment explanation
Indices: 65809237--65809294 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
65809227 CCTCGACTCT
*
65809237 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
65809267 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
65809295 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:65811652 original size:21 final size:20
Alignment explanation
Indices: 65811607--65811700 Score: 59
Period size: 21 Copynumber: 4.7 Consensus size: 20
65811597 ATTTTATAAT
* * *
65811607 TTTTATAGAATTTTAATATGT
1 TTTTATAAAATTTAAATAT-A
65811628 TTTTATAAAATTTAAAATATA
1 TTTTATAAAATTT-AAATATA
* *
65811649 TTTTATTAATTTTATAATA-A
1 TTTTATAAAATTTA-AATATA
* *
65811669 -TTTATTAGAATTT-TATATA
1 TTTTA-TAAAATTTAAATATA
*
65811688 TTTTATATAATTT
1 TTTTATAAAATTT
65811701 TTCTTATTTT
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
18 3 0.05
19 12 0.21
20 11 0.19
21 27 0.47
22 5 0.09
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (20 bp):
TTTTATAAAATTTAAATATA
Found at i:65811700 original size:10 final size:10
Alignment explanation
Indices: 65811556--65811701 Score: 79
Period size: 10 Copynumber: 14.3 Consensus size: 10
65811546 TATGATTTTC
65811556 TTTA-ATAAT
1 TTTATATAAT
*
65811565 TTT-TATAAA
1 TTTATATAAT
*
65811574 TTTATATCCAT
1 TTTATAT-AAT
65811585 TTTATTTAATACAT
1 TTTA--T-ATA-AT
*
65811599 TTTATA-ATT
1 TTTATATAAT
*
65811608 TTTATAGAAT
1 TTTATATAAT
**
65811618 TTTAATATGTT
1 TTT-ATATAAT
*
65811629 TTTATAAAAT
1 TTTATATAAT
* *
65811639 TTAAAATATAT
1 TTTATATA-AT
65811650 TTTAT-TAAT
1 TTTATATAAT
65811659 TTTATAATAA-
1 TTTAT-ATAAT
*
65811669 TTTATTAGAAT
1 TTTA-TATAAT
65811680 TTTATAT-AT
1 TTTATATAAT
65811689 TTTATATAAT
1 TTTATATAAT
65811699 TTT
1 TTT
65811702 TCTTATTTTT
Statistics
Matches: 103, Mismatches: 19, Indels: 29
0.68 0.13 0.19
Matches are distributed among these distances:
9 33 0.32
10 34 0.33
11 26 0.25
12 1 0.01
13 1 0.01
14 8 0.08
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (10 bp):
TTTATATAAT
Found at i:65818992 original size:45 final size:45
Alignment explanation
Indices: 65818941--65819026 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
65818931 CCTTGACCAC
*
65818941 TATAAATAATTAATAATAAATACCATATAATTTAATTAAAAGCAG
1 TATAAATAATTAATAATAAATACCATATAACTTAATTAAAAGCAG
** * *
65818986 TATAAATAATTTTTAATAAATACTATGTAACTTAATTAAAA
1 TATAAATAATTAATAATAAATACCATATAACTTAATTAAAA
65819027 TTTAATAAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.37
Consensus pattern (45 bp):
TATAAATAATTAATAATAAATACCATATAACTTAATTAAAAGCAG
Found at i:65834672 original size:148 final size:141
Alignment explanation
Indices: 65834411--65834703 Score: 496
Period size: 148 Copynumber: 2.0 Consensus size: 141
65834401 TCTATCCTTG
65834411 GCTGCTTCAAGTGAACAGGGAAAGAAACAACATTGCTAATTAATCAGAGGAATTAATTCAAGCTT
1 GCTGCTTCAAGTGAACAGGGAAAGAAACAACATTGCTAATTAATCAGAGGAATTAATTCAAGCTT
65834476 CAAGTCTCTAAGTAAAACAAAGCCTTTTCATCAATTGCATATTTCAAACAACACAATTAGTACAC
66 CAAGTCTCTAAGTAAAACAAAGCCTTTTCATCAATTGCATATTTCAAACAACACAATTAGTACAC
65834541 AAGGCACAGAA
131 AAGGCACAGAA
* *
65834552 GCTGCTTCAAGTGAACAGGGAAAGAAACAACATTGCTAATTTATCAGAGAATCAATTAATTAATT
1 GCTGCTTCAAGTGAACAGGGAAAGAAACAACATTGCTAATTAATCAGAG-------GAATTAATT
*
65834617 CAAGCTTCAAGTCTCTAAGTAAATCAAAGCCTTTTCATCAATTGCATATTTCAAACAACACAATT
59 CAAGCTTCAAGTCTCTAAGTAAAACAAAGCCTTTTCATCAATTGCATATTTCAAACAACACAATT
65834682 AGTACACAAGGCACAGAA
124 AGTACACAAGGCACAGAA
65834700 GCTG
1 GCTG
65834704 TCCATTACAA
Statistics
Matches: 142, Mismatches: 3, Indels: 7
0.93 0.02 0.05
Matches are distributed among these distances:
141 48 0.34
148 94 0.66
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (141 bp):
GCTGCTTCAAGTGAACAGGGAAAGAAACAACATTGCTAATTAATCAGAGGAATTAATTCAAGCTT
CAAGTCTCTAAGTAAAACAAAGCCTTTTCATCAATTGCATATTTCAAACAACACAATTAGTACAC
AAGGCACAGAA
Found at i:65840954 original size:46 final size:46
Alignment explanation
Indices: 65840887--65840978 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
65840877 GCACCCATAA
65840887 AACACACAATAGATCGCATTTTATCATCTATATATAAGAAAGTTGT
1 AACACACAATAGATCGCATTTTATCATCTATATATAAGAAAGTTGT
*
65840933 AACACACAATAGATCGCATTTTGTCATCTATATATAAGAAAGTTGT
1 AACACACAATAGATCGCATTTTATCATCTATATATAAGAAAGTTGT
65840979 CAAACATATT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (46 bp):
AACACACAATAGATCGCATTTTATCATCTATATATAAGAAAGTTGT
Found at i:65843156 original size:3 final size:3
Alignment explanation
Indices: 65843148--65843174 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
65843138 CTTGTTTTTC
65843148 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
65843175 AGAGAGGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:65848647 original size:27 final size:27
Alignment explanation
Indices: 65848617--65848703 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
65848607 TTTGCACATT
65848617 TAGTGCTCAGAAATTAATTCACACACA
1 TAGTGCTCAGAAATTAATTCACACACA
* * * *
65848644 TAGTGCT--TAAATCCAACTCACACACT
1 TAGTGCTCAGAAAT-TAATTCACACACA
65848670 TAGTGCTCAGAAATTAATTCACACACA
1 TAGTGCTCAGAAATTAATTCACACACA
65848697 TAGTGCT
1 TAGTGCT
65848704 TAAATCCAAC
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
25 4 0.08
26 17 0.35
27 24 0.49
28 4 0.08
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (27 bp):
TAGTGCTCAGAAATTAATTCACACACA
Found at i:65848668 original size:26 final size:26
Alignment explanation
Indices: 65848635--65848729 Score: 111
Period size: 26 Copynumber: 3.6 Consensus size: 26
65848625 AGAAATTAAT
65848635 TCACACACATAGTGCTTAAATCCAAC
1 TCACACACATAGTGCTTAAATCCAAC
* * * *
65848661 TCACACACTTAGTGCTCAGAAAT-TAAT
1 TCACACACATAGTGCT--TAAATCCAAC
65848688 TCACACACATAGTGCTTAAATCCAAC
1 TCACACACATAGTGCTTAAATCCAAC
* *
65848714 TCGCACACTTAGTGCT
1 TCACACACATAGTGCT
65848730 CAGTATCAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
25 4 0.07
26 31 0.55
27 17 0.30
28 4 0.07
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (26 bp):
TCACACACATAGTGCTTAAATCCAAC
Found at i:65848745 original size:27 final size:27
Alignment explanation
Indices: 65848610--65848755 Score: 111
Period size: 27 Copynumber: 5.5 Consensus size: 27
65848600 ATCTGATTTT
* *
65848610 GCACATTTAGTGCTCAGAAAT-TAATTC
1 GCACACTTAGTGCTCAG-AATCAAATTC
* * * * *
65848637 ACACACATAGTGCTTA-AATCCAACTC
1 GCACACTTAGTGCTCAGAATCAAATTC
* *
65848663 ACACACTTAGTGCTCAGAAAT-TAATTC
1 GCACACTTAGTGCTCAG-AATCAAATTC
* * * * *
65848690 ACACACATAGTGCTTA-AATCCAACTC
1 GCACACTTAGTGCTCAGAATCAAATTC
*
65848716 GCACACTTAGTGCTCAGTATCAAATTC
1 GCACACTTAGTGCTCAGAATCAAATTC
65848743 GCACACTTAGTGC
1 GCACACTTAGTGC
65848756 ATCCCTCAAA
Statistics
Matches: 94, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
25 6 0.06
26 35 0.37
27 50 0.53
28 3 0.03
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.27
Consensus pattern (27 bp):
GCACACTTAGTGCTCAGAATCAAATTC
Found at i:65848755 original size:53 final size:53
Alignment explanation
Indices: 65848610--65848732 Score: 228
Period size: 53 Copynumber: 2.3 Consensus size: 53
65848600 ATCTGATTTT
*
65848610 GCACATTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTC
1 GCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTC
*
65848663 ACACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTC
1 GCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTC
65848716 GCACACTTAGTGCTCAG
1 GCACACTTAGTGCTCAG
65848733 TATCAAATTC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 67 1.00
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.27
Consensus pattern (53 bp):
GCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTC
Found at i:65851171 original size:35 final size:35
Alignment explanation
Indices: 65851127--65851194 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
65851117 AAAACTTAAA
65851127 TTTTAAATCCATTAAAACTCAAGAAATTGAGGTAT
1 TTTTAAATCCATTAAAACTCAAGAAATTGAGGTAT
* *
65851162 TTTTGAATCCATTAAAACTTAAGAAATTGAGGT
1 TTTTAAATCCATTAAAACTCAAGAAATTGAGGT
65851195 TTTGAGTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.35
Consensus pattern (35 bp):
TTTTAAATCCATTAAAACTCAAGAAATTGAGGTAT
Found at i:65862880 original size:19 final size:18
Alignment explanation
Indices: 65862856--65862896 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
65862846 GAAATTTAAA
*
65862856 TTAAGTCGAATAAATTTAT
1 TTAAGTCAAAT-AATTTAT
*
65862875 TTAAGTCAAATAATTTTT
1 TTAAGTCAAATAATTTAT
65862893 TTAA
1 TTAA
65862897 CTAAACATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.46
Consensus pattern (18 bp):
TTAAGTCAAATAATTTAT
Found at i:65862895 original size:18 final size:19
Alignment explanation
Indices: 65862842--65862896 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
65862832 GAAGTGAGTG
*
65862842 AAATGAAATTTAAATTAAGTC
1 AAAT-AAATTT-ATTTAAGTC
*
65862863 GAATAAATTTATTTAAGTC
1 AAATAAATTTATTTAAGTC
*
65862882 AAAT-AATTTTTTTAA
1 AAATAAATTTATTTAA
65862897 CTAAACATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 10 0.33
19 11 0.37
20 6 0.20
21 3 0.10
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (19 bp):
AAATAAATTTATTTAAGTC
Found at i:65863747 original size:5 final size:5
Alignment explanation
Indices: 65863737--65863765 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
65863727 ATATTTTCAA
65863737 TTAAT TTAAT TTAAT TTAAT TT-AT TTAAT
1 TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT
65863766 ATTATATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTAAT
Found at i:65871111 original size:36 final size:36
Alignment explanation
Indices: 65871071--65871150 Score: 151
Period size: 36 Copynumber: 2.2 Consensus size: 36
65871061 TGTTAACTGA
65871071 GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
1 GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
65871107 GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
1 GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
65871143 GACTAAAT
1 GAC-AAAT
65871151 TGTAAAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 39 0.91
37 4 0.09
ACGTcount: A:0.42, C:0.04, G:0.21, T:0.33
Consensus pattern (36 bp):
GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
Found at i:65875698 original size:12 final size:12
Alignment explanation
Indices: 65875676--65875737 Score: 72
Period size: 12 Copynumber: 4.8 Consensus size: 12
65875666 GGCACTATTG
65875676 AAAAGTATGAACT
1 AAAA-TATGAACT
65875689 AAAATATGAACT
1 AAAATATGAACT
65875701 AAAATATGAA-T
1 AAAATATGAACT
65875712 AAAGAATGTATGAACT
1 -AA-AA--TATGAACT
65875728 AAAATATGAA
1 AAAATATGAA
65875738 TTGGGTTGTA
Statistics
Matches: 44, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
11 1 0.02
12 26 0.59
13 6 0.14
14 2 0.05
15 8 0.18
16 1 0.02
ACGTcount: A:0.58, C:0.05, G:0.13, T:0.24
Consensus pattern (12 bp):
AAAATATGAACT
Found at i:65881465 original size:18 final size:18
Alignment explanation
Indices: 65881408--65881467 Score: 63
Period size: 17 Copynumber: 3.4 Consensus size: 18
65881398 AATGTAGGTA
65881408 AAAAT-ATAATGATATTT
1 AAAATAATAATGATATTT
* * *
65881425 GAAATAAT--TTATATATA
1 AAAATAATAATGATAT-TT
65881442 AAAATAATAATGATATTT
1 AAAATAATAATGATATTT
65881460 AAAATAAT
1 AAAATAAT
65881468 TATTTAATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
16 5 0.15
17 12 0.36
18 11 0.33
19 5 0.15
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATAATAATGATATTT
Found at i:65881695 original size:16 final size:17
Alignment explanation
Indices: 65881663--65881695 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
65881653 TTATTATTTT
65881663 ATTTATATAAATAAAAA
1 ATTTATATAAATAAAAA
*
65881680 ATTTAT-TAATTAAAAA
1 ATTTATATAAATAAAAA
65881696 GATGAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
ATTTATATAAATAAAAA
Found at i:65890692 original size:46 final size:46
Alignment explanation
Indices: 65890509--65890691 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
65890499 TTTCTGTCAT
** * *
65890509 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
* **
65890555 GTTGCCATGGTATCTTTCGACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
* *
65890601 GTTTCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
65890647 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
65890692 GAGAGCATAC
Statistics
Matches: 128, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 128 1.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
Found at i:65897090 original size:18 final size:20
Alignment explanation
Indices: 65897055--65897099 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 20
65897045 TTCTTTATTA
65897055 AATATTATTAGTATTATT-TC
1 AATATTATTAG-ATTATTATC
65897075 TAATATTATTA-A-TATTATC
1 -AATATTATTAGATTATTATC
65897094 AATATT
1 AATATT
65897100 TTTTTTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 10 0.43
19 3 0.13
21 10 0.43
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.53
Consensus pattern (20 bp):
AATATTATTAGATTATTATC
Found at i:65897221 original size:23 final size:23
Alignment explanation
Indices: 65897195--65897242 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
65897185 CATATTGTTA
*
65897195 TTATTAGTATTA-TAATATTATAT
1 TTATTAGTAATATTAATA-TATAT
*
65897218 TTATTATTAATATTAATATATAT
1 TTATTAGTAATATTAATATATAT
65897241 TT
1 TT
65897243 TATATATGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
TTATTAGTAATATTAATATATAT
Found at i:65897222 original size:17 final size:17
Alignment explanation
Indices: 65897193--65897256 Score: 58
Period size: 19 Copynumber: 3.5 Consensus size: 17
65897183 TTCATATTGT
65897193 TATTAT-TAGTATTATAA
1 TATTATATA-TATTATAA
*
65897210 TATTATATTTATTATTAA
1 TATTATATATATTA-TAA
*
65897228 TATTAATATATATTTTATA
1 TATT-ATATATATTATA-A
65897247 TATGTATATA
1 TAT-TATATA
65897257 CATACTTTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
17 11 0.28
18 10 0.26
19 17 0.44
20 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
TATTATATATATTATAA
Found at i:65897301 original size:24 final size:23
Alignment explanation
Indices: 65897272--65897325 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
65897262 TTTTATATAG
65897272 TATTATCGTTT-CTATTATTATATT
1 TATTATC-TTTACTATTATTAT-TT
65897296 TATTAT-TTTCACTATTATTATTT
1 TATTATCTTT-ACTATTATTATTT
*
65897319 TTTTATC
1 TATTATC
65897326 ATTATTATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 3 0.12
23 7 0.27
24 16 0.62
ACGTcount: A:0.24, C:0.09, G:0.02, T:0.65
Consensus pattern (23 bp):
TATTATCTTTACTATTATTATTT
Found at i:65897463 original size:29 final size:29
Alignment explanation
Indices: 65897426--65897505 Score: 78
Period size: 31 Copynumber: 2.7 Consensus size: 29
65897416 TCATTTCTTC
65897426 ATTAT-TTTTTTATTTATTATTTT-AAAT
1 ATTATATTTTTTATTTATTATTTTAAAAT
65897453 ACTCT-TATTTTATGTATATTATT-TTTTAAAAT
1 A-T-TATATTTT-T-TAT-TTATTATTTTAAAAT
*
65897485 ATTATATTTTTTATATATTAT
1 ATTATATTTTTTATTTATTAT
65897506 GTATATTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 16
0.72 0.02 0.27
Matches are distributed among these distances:
27 1 0.02
28 6 0.14
29 9 0.21
30 3 0.07
31 14 0.33
32 10 0.23
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (29 bp):
ATTATATTTTTTATTTATTATTTTAAAAT
Found at i:65897750 original size:24 final size:22
Alignment explanation
Indices: 65897713--65897767 Score: 56
Period size: 24 Copynumber: 2.4 Consensus size: 22
65897703 TATGTAAATG
* *
65897713 TTATGTAGATATTTTAATATCATA
1 TTATGTATACATTTT-ATAT-ATA
*
65897737 TTATGTATACATTTTTTATATA
1 TTATGTATACATTTTATATATA
*
65897759 TTACGTATA
1 TTATGTATA
65897768 TTTATCTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 11 0.41
23 3 0.11
24 13 0.48
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (22 bp):
TTATGTATACATTTTATATATA
Found at i:65898000 original size:17 final size:18
Alignment explanation
Indices: 65897978--65898018 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
65897968 AGTATACGTG
65897978 TATATAATA-TACTTTTA
1 TATATAATATTACTTTTA
*
65897995 TATATAATATTATTTTTA
1 TATATAATATTACTTTTA
65898013 TATATA
1 TATATA
65898019 CCATTATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
TATATAATATTACTTTTA
Found at i:65898024 original size:18 final size:18
Alignment explanation
Indices: 65897990--65898025 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
65897980 TATAATATAC
*
65897990 TTTTATATATAATATTAT
1 TTTTATATATAACATTAT
*
65898008 TTTTATATATACCATTAT
1 TTTTATATATAACATTAT
65898026 ATTCATACTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTTATATATAACATTAT
Found at i:65898281 original size:28 final size:28
Alignment explanation
Indices: 65898239--65898298 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 28
65898229 TATATTGTTA
65898239 TTTTCTATTATTATTA-TAAATACATTAT
1 TTTTCTATTATTATTAGT-AATACATTAT
*
65898267 TTTTCTTATTA-TATTAGTAGTACATTAT
1 TTTTC-TATTATTATTAGTAATACATTAT
65898295 TTTT
1 TTTT
65898299 ATTTTCTTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 23 0.79
29 6 0.21
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (28 bp):
TTTTCTATTATTATTAGTAATACATTAT
Found at i:65900226 original size:30 final size:30
Alignment explanation
Indices: 65900180--65900273 Score: 161
Period size: 30 Copynumber: 3.1 Consensus size: 30
65900170 TTTTATTATG
*
65900180 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
65900211 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
65900241 CCAATATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
65900271 CCA
1 CCA
65900274 TAAATATGGA
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
30 54 0.89
31 7 0.11
ACGTcount: A:0.27, C:0.26, G:0.06, T:0.41
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:65900235 original size:15 final size:15
Alignment explanation
Indices: 65900190--65900267 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
65900180 CCAATATCTC
65900190 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
65900205 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
65900220 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
65900235 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
65900250 GATACCCATATCTTT
1 GATACCCATATCTTT
65900265 GAT
1 GAT
65900268 TTTCCATAAA
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 8 0.17
15 31 0.66
16 8 0.17
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:65903515 original size:30 final size:30
Alignment explanation
Indices: 65903471--65903561 Score: 148
Period size: 30 Copynumber: 3.0 Consensus size: 30
65903461 TTTATTATGC
*
65903471 CAATATCTCGATACCCATATCTTTGACTTTT
1 CAATAT-TTGATACCCATATCTTTGACTTTT
*
65903502 CAATATTTGATACCCATATCTTTGACTTTC
1 CAATATTTGATACCCATATCTTTGACTTTT
65903532 CAATATTTGATACCCATATCTTTGA-TTTT
1 CAATATTTGATACCCATATCTTTGACTTTT
65903561 C
1 C
65903562 CATAAATATG
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
29 4 0.07
30 47 0.82
31 6 0.11
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (30 bp):
CAATATTTGATACCCATATCTTTGACTTTT
Found at i:65903525 original size:15 final size:15
Alignment explanation
Indices: 65903480--65903557 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
65903470 CCAATATCTC
65903480 GATACCCATATCTTT
1 GATACCCATATCTTT
*** *
65903495 GACTTTTCA-ATATTT
1 GA-TACCCATATCTTT
65903510 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
65903525 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
65903540 GATACCCATATCTTT
1 GATACCCATATCTTT
65903555 GAT
1 GAT
65903558 TTTCCATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 7 0.16
15 31 0.69
16 7 0.16
ACGTcount: A:0.27, C:0.22, G:0.08, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:65912462 original size:51 final size:51
Alignment explanation
Indices: 65912335--65912463 Score: 138
Period size: 51 Copynumber: 2.5 Consensus size: 51
65912325 TCTCCTCTAG
* * ***
65912335 CTTGCCTACAAGATGGA-TTTGCCTCCAAGGATATCATACTTTTTGGATTCA
1 CTTGCCTACAAGA-CGACTTTACCTCCAAGGATATCATACTTTCCAGATTCA
* * *
65912386 CTTGCCTACAAAACAAC-TTAGCCTCCAAGGCTATCATACTTTCCCAG-TTCA
1 CTTGCCTACAAGACGACTTTA-CCTCCAAGGATATCATACTTT-CCAGATTCA
65912437 CTTGCCTACAAGACGACTTTACCTCCA
1 CTTGCCTACAAGACGACTTTACCTCCA
65912464 TGATTATTAT
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
50 3 0.05
51 57 0.89
52 4 0.06
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.30
Consensus pattern (51 bp):
CTTGCCTACAAGACGACTTTACCTCCAAGGATATCATACTTTCCAGATTCA
Found at i:65912486 original size:51 final size:51
Alignment explanation
Indices: 65912382--65912479 Score: 117
Period size: 51 Copynumber: 1.9 Consensus size: 51
65912372 ACTTTTTGGA
* *
65912382 TTCACTTGCCTACAAAACAACTTAGCCTCCAAGGCTATCATACTTTCCCAG
1 TTCACTTGCCTACAAAACAACTTAGCCTCCAAGACTATCATACCTTCCCAG
* * * * *
65912433 TTCACTTGCCTACAAGACGACTTTA-CCTCCATGATTATTATACCTTC
1 TTCACTTGCCTACAAAACAAC-TTAGCCTCCAAGACTATCATACCTTC
65912480 TGAGTTCGCT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
51 36 0.92
52 3 0.08
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.32
Consensus pattern (51 bp):
TTCACTTGCCTACAAAACAACTTAGCCTCCAAGACTATCATACCTTCCCAG
Found at i:65915280 original size:22 final size:22
Alignment explanation
Indices: 65915255--65915297 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
65915245 GTAATAAAAT
65915255 TAAATAAAATTTTGTTTAAGTC
1 TAAATAAAATTTTGTTTAAGTC
65915277 TAAATAAAATTTTGTTTAAGT
1 TAAATAAAATTTTGTTTAAGT
65915298 AATAAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (22 bp):
TAAATAAAATTTTGTTTAAGTC
Found at i:65916276 original size:7 final size:7
Alignment explanation
Indices: 65916264--65916288 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
65916254 TGTAGTCTTA
65916264 AATGGTC
1 AATGGTC
65916271 AATGGTC
1 AATGGTC
65916278 AATGGTC
1 AATGGTC
65916285 AATG
1 AATG
65916289 CTTCAGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (7 bp):
AATGGTC
Found at i:65921291 original size:33 final size:32
Alignment explanation
Indices: 65921236--65921385 Score: 138
Period size: 33 Copynumber: 4.5 Consensus size: 32
65921226 TTTCTGATGG
* * * *
65921236 ACATAACCTTTTCCAGTCGTACACTCGAGGTGT
1 ACAT-ACCTTTTCAAGTGGTACACTCAAAGTGT
*
65921269 ACATTCCCTTTTCAAGTGGTACACTCAAAGTGT
1 ACA-TACCTTTTCAAGTGGTACACTCAAAGTGT
* * * *
65921302 ACGTATTCTTTTCAAGTTGTACACGCAAAGTGT
1 ACATA-CCTTTTCAAGTGGTACACTCAAAGTGT
* * * *
65921335 ACATAGCCTTTTCAAATTGTACACACAAAGTGC
1 ACATA-CCTTTTCAAGTGGTACACTCAAAGTGT
65921368 ACATAACCTTTTCAAGTG
1 ACAT-ACCTTTTCAAGTG
65921386 TACCATTTAG
Statistics
Matches: 96, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
32 1 0.01
33 93 0.97
34 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.32
Consensus pattern (32 bp):
ACATACCTTTTCAAGTGGTACACTCAAAGTGT
Found at i:65921349 original size:66 final size:65
Alignment explanation
Indices: 65921236--65921388 Score: 171
Period size: 66 Copynumber: 2.3 Consensus size: 65
65921226 TTTCTGATGG
* * * * * * *
65921236 ACATAACCTTTTCCAGTCGTACACTCGAGGTGTACATTCCCTTTTCAAGTGGTACACTCAAAGTG
1 ACATAACCTTTTCAAGT-GTACACGCAAAGTGTACATACCCTTTTCAAATGGTACACACAAAGTG
*
65921301 T
65 C
* ** * *
65921302 ACGTATTCTTTTCAAGTTGTACACGCAAAGTGTACATAGCCTTTTCAAATTGTACACACAAAGTG
1 ACATAACCTTTTCAAG-TGTACACGCAAAGTGTACATACCCTTTTCAAATGGTACACACAAAGTG
65921367 C
65 C
65921368 ACATAACCTTTTCAAGTGTAC
1 ACATAACCTTTTCAAGTGTAC
65921389 CATTTAGGTA
Statistics
Matches: 70, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
65 5 0.07
66 64 0.91
67 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (65 bp):
ACATAACCTTTTCAAGTGTACACGCAAAGTGTACATACCCTTTTCAAATGGTACACACAAAGTGC
Found at i:65922110 original size:20 final size:20
Alignment explanation
Indices: 65922068--65922110 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
65922058 TTATCTATCA
* * *
65922068 ATAACCTTTCATTTTCTATC
1 ATAACCTTTCAATTTATAGC
*
65922088 ATAATCTTTCAATTTATAGC
1 ATAACCTTTCAATTTATAGC
65922108 ATA
1 ATA
65922111 TTCATCCATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.47
Consensus pattern (20 bp):
ATAACCTTTCAATTTATAGC
Found at i:65934767 original size:25 final size:23
Alignment explanation
Indices: 65934715--65934769 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
65934705 TATAAATAGT
65934715 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
65934738 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
65934763 AATAGTG
1 AATAGTG
65934770 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:65935031 original size:21 final size:23
Alignment explanation
Indices: 65934972--65935031 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
65934962 TATAGAATTT
**
65934972 AGAATATACCTAAT-ATATTAAA
1 AGAATATATATAATAATATTAAA
65934994 AGAATATATATATATAATATTAAA
1 AGAATATATATA-ATAATATTAAA
65935018 A-AATATA-ATAATAA
1 AGAATATATATAATAA
65935032 CAAAAAAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 4 0.12
22 13 0.38
23 8 0.24
24 9 0.26
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (23 bp):
AGAATATATATAATAATATTAAA
Found at i:65935036 original size:18 final size:19
Alignment explanation
Indices: 65935001--65935038 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
65934991 AAAAGAATAT
**
65935001 ATATATATAATATTAAAAA
1 ATATATATAATAACAAAAA
65935020 ATATA-ATAATAACAAAAA
1 ATATATATAATAACAAAAA
65935038 A
1 A
65935039 AAGAGGGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (19 bp):
ATATATATAATAACAAAAA
Found at i:65935350 original size:16 final size:16
Alignment explanation
Indices: 65935312--65935350 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
65935302 TCTCCAAAAA
*
65935312 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
65935328 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
65935344 AATAACT
1 AAAAACT
65935351 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:65935575 original size:29 final size:30
Alignment explanation
Indices: 65935507--65935604 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
65935497 TAGGTACAAG
*
65935507 TGGTGGTGGAGCAAGTGTGGCTAATGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
65935537 AGGTGGTGGAGCAAGTGTGGCTAGT-GAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
65935566 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
65935596 TGGTGGTGG
1 TGGTGGTGG
65935605 CAAAGACTAG
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
29 28 0.44
30 36 0.56
ACGTcount: A:0.17, C:0.06, G:0.50, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:65936504 original size:92 final size:91
Alignment explanation
Indices: 65936319--65936819 Score: 423
Period size: 90 Copynumber: 5.6 Consensus size: 91
65936309 CGTGAGCCAC
* * * * * *
65936319 GGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTT-AAAACA-AAATTTG-TAAAACAGAT-T
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGCAAACATAAA-TTGAAAAAAAAAATAA
* ** *
65936379 TTGAAAATACCTCGGTATGTGACCCGA
65 TTGAAAATACCTCAGCGTGTGACCTGA
* *
65936406 GGCTCAACTCACCTTTCGTAATATGAGTTGA-TTTTTGCAAAGCATAAATTGAAAAAAAAAATCA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGCAAA-CATAAATTGAAAAAAAAAAT-A
* *
65936470 ATTGAAAATACCTCGGCGTGTGATCTGA
64 ATTGAAAATACCTCAGCGTGTGACCTGA
*
65936498 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACATAAATTG-AAAAAAAGA-AA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-CAAACATAAATTGAAAAAAAAAATAA
*
65936561 TTGAAAATATCTCAGCGTGT--CCTGA
65 TTGAAAATACCTCAGCGTGTGACCTGA
* * * *
65936586 GGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACA-AAATTTGAAAAACAGAAT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-G-CAAACATAAA-TTGAAAAAAAAAAT
* *
65936650 --TTGAAAATACCTCAGCGTGTGA-GTCAA
63 AATTGAAAATACCTCAGCGTGTGACCT-GA
* * * * * * *
65936677 GGCTCAACTCA-CACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTG-AAGAACAGA-A
1 GGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGCAA-ACATAAATTGAAAAAAAAAATA
* * *
65936739 ATGGAAAACACCTCAGC--GT--CTTGA
64 ATTGAAAATACCTCAGCGTGTGACCTGA
* * * *
65936763 GGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGCAA-ACATAAATTGAAAA
65936820 TACCTCAACG
Statistics
Matches: 349, Mismatches: 42, Indels: 45
0.80 0.10 0.10
Matches are distributed among these distances:
86 11 0.03
87 73 0.21
88 50 0.14
89 41 0.12
90 75 0.21
91 20 0.06
92 60 0.17
93 15 0.04
94 4 0.01
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (91 bp):
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGCAAACATAAATTGAAAAAAAAAATAAT
TGAAAATACCTCAGCGTGTGACCTGA
Found at i:65936656 original size:13 final size:14
Alignment explanation
Indices: 65936624--65936656 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
65936614 TGATTTTTTG
65936624 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
65936638 GAAAAACAGAATTT
1 GAAAAACAAAATTT
65936652 GAAAA
1 GAAAA
65936657 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:65936656 original size:179 final size:172
Alignment explanation
Indices: 65936246--65937035 Score: 596
Period size: 179 Copynumber: 4.7 Consensus size: 172
65936236 TTAACTCATT
* * * * * * * *
65936246 TCTCGCAATATGAATTGACTCTTTAAAACTACA-TT-AAAAACAGAAATTGAAAATAGCTCAGCA
1 TCTCGCAATATGAGTTGA-TTTTTGAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCG
* * * * *
65936309 CGTGAGC-CACGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-AAAACAAAATTTGTAAA
65 TGTGATCTGA-GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAA-TTGAAAA
** * * * *
65936372 ACAGATTTTGAAAATACCTCGGTATGTGACCCGAGGCTCAACTCACC
128 ACAGAAATTGAAAATACCTCAG--CGTGTCCTGAGGCTCAACTCACC
* * * *
65936419 TTTCGTAATATGAGTTGATTTTTGCAAAGCATAAA-TTGAAAAAAAAAATCAATTGAAAATACCT
1 TCTCGCAATATGAGTTGATTTTTG-AAA-CA-AAATTTGAAAAACAGAAT---TTGAAAATACCT
*
65936483 CGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACATAAAT
60 CAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGA-AAACA-AAAT
* * *
65936548 TGAAAAAAAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTGAACTCACC
122 TGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
65936599 TCTCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCA
1 TCTCGCAATATGAGTTGA-TTTTT-G--AAACAAAATTTGAAAAACAGAATTTGAAAATACCTCA
* * *
65936664 GCGTGTGAGTC-AAGGCTCAACTCA-CACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAAT
62 GCGTGTGA-TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACA-AAAT
* * * * *
65936727 TGAAGAACAGAAATGGAAAACACCTCAGC--GTCTTGAGGTTCAACTCACC
122 TGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
* * * *
65936776 TCTCGCAATATGAGCTGA-TTTT---------TTTGAAAGACAGAAATTGAAAATACCTCAACGT
1 TCTCGCAATATGAGTTGATTTTTGAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCGT
*
65936831 GT-CT-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG---AC---------AAACA
66 GTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAATTGAAAAACA
* * * *
65936882 AAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACTCACC
131 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
* *
65936922 TCTCGCAATATGAGTTGA-TTTT---------TTTG-AAAACAGAAATTGAAAATACCTCAACGT
1 TCTCGCAATATGAGTTGATTTTTGAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCGT
* * *
65936976 GT-CT-TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAACAAAATTGAAAA
66 GTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAATTGAAAA
65937036 TACCTCAACG
Statistics
Matches: 522, Mismatches: 62, Indels: 82
0.78 0.09 0.12
Matches are distributed among these distances:
145 69 0.13
146 65 0.12
148 2 0.00
156 2 0.00
157 2 0.00
160 6 0.01
161 13 0.02
162 17 0.03
163 32 0.06
172 4 0.01
173 18 0.03
174 1 0.00
175 8 0.02
176 8 0.02
177 34 0.07
178 19 0.04
179 121 0.23
180 43 0.08
181 9 0.02
182 43 0.08
183 6 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (172 bp):
TCTCGCAATATGAGTTGATTTTTGAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCGT
GTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAATTGAAAAACA
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
Found at i:65936736 original size:90 final size:87
Alignment explanation
Indices: 65936246--65936819 Score: 538
Period size: 87 Copynumber: 6.5 Consensus size: 87
65936236 TTAACTCATT
* * * * * * *
65936246 TCTCGCAATATGAATTGACTCTTT-AAAACTACATT-AAAAACAGAAATTGAAAATAGCTCAGCA
1 TCTCGCAATATGAGTTGATTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCG
* * * *
65936309 CGTGAGCCACGGCTCAACTCACT
66 TGTGATCGA-GGCTCAACTCACC
* ** * *
65936332 TCTCGCAATATGAGTTGA-TTTTT-AAAACAAAATTTGTAAAACAGATTTTGAAAATACCTCGGT
1 TCTCGCAATATGAGTTGATTTTTTGAAAACAAAA-TTGAAAAACAGAAATTGAAAATACCTCAGC
* *
65936395 ATGTGACCCGAGGCTCAACTCACC
65 GTGTGA-TCGAGGCTCAACTCACC
* * * * *
65936419 TTTCGTAATATGAGTTGA-TTTTTGCAAAGCATAAATTGAAAAAAAAAATCAATTGAAAATACCT
1 TCTCGCAATATGAGTTGATTTTTTG-AAAACA-AAATTG-AAAAACAGA--AATTGAAAATACCT
*
65936483 CGGCGTGTGATCTGAGGCTCAACTCACC
61 CAGCGTGTGATC-GAGGCTCAACTCACC
* *
65936511 TCTCGCAATATGAGTTGATTTTTTGACAAACATAAATTGAAAAAAAGAAATTGAAAATATCTCAG
1 TCTCGCAATATGAGTTGATTTTTTGA-AAACA-AAATTGAAAAACAGAAATTGAAAATACCTCAG
** *
65936576 CGTGTCCT-GAGGCTGAACTCACC
64 CGTGTGATCGAGGCTCAACTCACC
*
65936599 TCTCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCA
1 TCTCGCAATATGAGTTGATTTTTT-G-AAAACAAAA-TTGAAAAACAGAAATTGAAAATACCTCA
*
65936664 GCGTGTGAGTCAAGGCTCAACTCA-C
63 GCGTGTGA-TCGAGGCTCAACTCACC
* * * * *
65936689 ACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCA
1 TCTCGCAATATGAGTTGA-TTTTTTGAAA-ACA-AAATTGAAAAACAGAAATTGAAAATACCTCA
* *
65936754 GCGTCT--T-GAGGTTCAACTCACC
63 GCGTGTGATCGAGGCTCAACTCACC
*
65936776 TCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 TCTCGCAATATGAGTTGA-TTTTTTGAAA-ACA-AAATTGAAAA
65936820 TACCTCAACG
Statistics
Matches: 414, Mismatches: 53, Indels: 41
0.81 0.10 0.08
Matches are distributed among these distances:
85 11 0.03
86 30 0.07
87 102 0.25
88 43 0.10
89 48 0.12
90 82 0.20
91 21 0.05
92 60 0.14
93 17 0.04
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (87 bp):
TCTCGCAATATGAGTTGATTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCG
TGTGATCGAGGCTCAACTCACC
Found at i:65936934 original size:71 final size:71
Alignment explanation
Indices: 65936726--65937726 Score: 1237
Period size: 71 Copynumber: 14.0 Consensus size: 71
65936716 AACACAGAAA
* * * * *
65936726 TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
1 TTGAA-AACAAAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
65936791 TGATTTTT
65 TGA-TTTT
* *
65936799 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAAAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
65936864 GTTGA-TTT
63 GTTGATTTT
* *
65936872 TTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGT
1 TTGA-AAACAAAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
65936937 TGATTTTT
65 TGA-TTTT
* * *
65936945 TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
*
65937010 CTGA-TTT
64 TTGATTTT
*
65937017 TTGAAAAC-AAAATTGAAAATACCTCAACGTGTCTTGAGG-TCAACTCACCT-TCGCAATATGAG
1 TTGAAAACAAAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
65937079 TTGA-TTT
64 TTGATTTT
* *
65937086 TTGAAAAC-AAAATTG-AAATA-CTCAACGTGTCTTGAGGCTCAACTCATC-CTCGCAATATGAG
1 TTGAAAACAAAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
65937147 TTGATTTTT
64 TTGA-TTTT
*
65937156 TTGAAAACAAAAATTG-AAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGAAAACAAAAATTGAAAATACCTCAGCGTCT-TGAGGCTCAACTCACCTCTCGCAATATGAGT
65937220 TGATTTT
65 TGATTTT
* *
65937227 TTGAAAACAAAATTTGAAATTGAAACCTCAGCGTC-TGAGGCTCAACTCA-CTCTCGCAATATGA
1 TTGAAAACAAAAATTGAAA---ATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
65937290 GTTGATTTTT
63 GTTGA-TTTT
* *
65937300 TTG-AAACAGAAATTGAAAATACCTCA-CGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGAAAACAAAAATTGAAAATACCTCAGCGTCT-TGAGGCTCAACTCACCTCTCGCAATATGAGT
65937363 TGATTTT
65 TGATTTT
*
65937370 TTGAAAAC-AAAATTGAAATTACCTCAGCGTCTTGAGG-T-AACTCACCTCTCGCAATATGAG-T
1 TTGAAAACAAAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
65937431 GATTTT
66 GATTTT
* *
65937437 TTGAAAAACAGAAATTGAAAAT-CCTCAACGTGTCTTGAGGCTCAACTCA-CTCTCGCAATATGA
1 TTG-AAAACAAAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
65937500 GTTGA-TTT
63 GTTGATTTT
*
65937508 TTGACAAACAAAAAATTGAAATTACCT-AGCGTCTTGAGG-TC-ACTCACCT-TCGCAATATGAG
1 TTGA-AAAC-AAAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
65937569 TTGATTTTT
64 TTGA-TTTT
* * * *
65937578 TTGAAAAACAGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGA
1 TTG-AAAACAAAAATTGAAAATACC-TCA-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
65937643 GTTGA-GTT
63 GTTGATTTT
* *
65937651 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAAAAATTGAAAATACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
65937716 GTTGATTTT
63 GTTGATTTT
65937725 TT
1 TT
65937727 TTAGATACAT
Statistics
Matches: 831, Mismatches: 47, Indels: 99
0.85 0.05 0.10
Matches are distributed among these distances:
67 27 0.03
68 85 0.10
69 70 0.08
70 100 0.12
71 172 0.21
72 120 0.14
73 141 0.17
74 52 0.06
75 64 0.08
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (71 bp):
TTGAAAACAAAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTT
Found at i:65937356 original size:283 final size:288
Alignment explanation
Indices: 65936732--65938255 Score: 1866
Period size: 282 Copynumber: 5.2 Consensus size: 288
65936722 GAAATTGAAG
* * * * *
65936732 AACAGAAATGGAAAACACCTCA-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATT
1 AACAGAAATTGAAAATACCTCACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
65936796 TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
65 TTTTTGAAA-ACA-AAATTG-AAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
* *
65936861 TGAGTTGA-TTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCT-TGAGGTTCAACTCACCTC
127 TGAGTTGATTTTTTGA-AAACAAAAATTGAAA-TACCTCAGCGTGTCTGAGGCTCAACTCACCTC
*
65936924 TCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCA
190 TCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCA
*
65936989 ACTCACCTCTCGCAATATGAGCTGA--TTTTTGAA
255 ACTCACCTCTCGCAATATGAGTTGATTTTTTTG-A
65937022 AACA-AAATTGAAAATACCTCAACGTGTCTTGAGG-TCAACTCACCT-TCGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTC-ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
65937083 TTTTTGAAAACAAAATTGAAATA-CTCAACGTGTCTTGAGGCTCAACTCATC-CTCGCAATATGA
65 TTTTTGAAAACAAAATTGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
65937146 GTTGATTTTTTTGAAAACAAAAATTGAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGC
130 GTTGA-TTTTTTGAAAACAAAAATTGAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGC
* *
65937211 AATATGAGTTGA-TTTTTTGAAAACA-AAATTTGAAATTGAAACCTC-A-GCGTC-TGAGGCTCA
194 AATATGAGTTGATTTTTTTGAAAACAGAAA-TTGAAA---ATACCTCAACGTGTCTTGAGGCTCA
65937271 ACTCA-CTCTCGCAATATGAGTTGATTTTTTTGA
255 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
65937304 AACAGAAATTGAAAATACCTCACGTGTC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AACAGAAATTGAAAATACCTCACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
65937368 TTTTGAAAACAAAATTGAAATTACCTC-A-GCGTCTTGAGG-T-AACTCACCTCTCGCAATATGA
66 TTTTGAAAACAAAATTGAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
65937429 G-TGATTTTTTGAAAAACAGAAATTGAAA-ATCCTCAACGTGTCTTGAGGCTCAACTCA-CTCTC
130 GTTGATTTTTTG-AAAACAAAAATTGAAATA-CCTCAGCGTGTC-TGAGGCTCAACTCACCTCTC
* * *
65937491 GCAATATGAGTTGA--TTTTTGACAAACAAAAAATTGAAATTACCT--A-GCGTCTTGAGG-TC-
192 GCAATATGAGTTGATTTTTTTGA-AAAC-AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCA
65937549 ACTCACCT-TCGCAATATGAGTTGATTTTTTTGAAA
255 ACTCACCTCTCGCAATATGAGTTGATTTTTTTG--A
* *
65937584 AACAGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACC-TCACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
65937648 GTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
65 TTTTTGA-AAAC-AAAATTGAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
* * *
65937713 TGAGTTGATTTTTTTTAGATACATAAATTAAAAAAACGGAAATTGAAAACACCTCAGCGTCT-TG
127 TGAGTTGA--TTTTTT-G-----------AAAACAA---AAATTG-AAATACCTCAGCGTGTCTG
* * *
65937777 AGGTTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
174 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCA
***
65937842 ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
238 ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
* * * *
65937893 AACAAAAATT-AAAATTACCTCA-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAA-TACCTCACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
65937956 TTTTTTTGAAAGAC-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAGCTCTCGCAAT
64 -TTTTTTGAAA-ACAAAATTG-AAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
65938020 ATGAGTTGA-TTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACC
126 ATGAGTTGATTTTTTGA-AAACAAAAATTGAAA-TACCTCAGCGTGTC-TGAGGCTCAACTCACC
*
65938084 TATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGC
188 TCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGC
* * ***
65938149 TCAACTCACCTTTCGCAATATGAGTTGAGTTTTGACA
252 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
* * * *
65938186 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCA-CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
65938251 TTTTT
65 TTTTT
65938256 TTAGAAACAT
Statistics
Matches: 1093, Mismatches: 62, Indels: 155
0.83 0.05 0.12
Matches are distributed among these distances:
278 29 0.03
279 10 0.01
280 29 0.03
281 55 0.05
282 180 0.16
283 169 0.15
284 47 0.04
285 24 0.02
286 7 0.01
287 31 0.03
288 3 0.00
289 29 0.03
290 25 0.02
291 28 0.03
293 132 0.12
294 11 0.01
295 35 0.03
301 5 0.00
303 13 0.01
304 24 0.02
305 34 0.03
306 10 0.01
307 37 0.03
308 68 0.06
309 21 0.02
310 16 0.01
311 21 0.02
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (288 bp):
AACAGAAATTGAAAATACCTCACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTGAAAACAAAATTGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGAAAACAAAAATTGAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGATTTTTTTGA
Found at i:65937829 original size:88 final size:89
Alignment explanation
Indices: 65937662--65937834 Score: 231
Period size: 88 Copynumber: 1.9 Consensus size: 89
65937652 TGACAAACAA
** * *
65937662 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAACACCTCAGCG-GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTTT
* * * *
65937727 TTAGATACATAAATTAAAAAAACGG
65 TGAAAGACAGAAATTAAAAAAACGG
* *
65937752 AAATTGAAAACACCTCAGC-GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTAATTTTTTT
1 AAATTGAAAACACCTCAGCGGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTTTT
*
65937816 GAAAGACAGAAATTGAAAA
66 GAAAGACAGAAATTAAAAA
65937835 TACCTCAACG
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
88 55 0.76
90 17 0.24
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (89 bp):
AAATTGAAAACACCTCAGCGGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTTTT
GAAAGACAGAAATTAAAAAAACGG
Found at i:65937902 original size:73 final size:73
Alignment explanation
Indices: 65937752--65938254 Score: 667
Period size: 73 Copynumber: 6.9 Consensus size: 73
65937742 AAAAAAACGG
* * * * *
65937752 AAATTGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTAATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
*
65937815 TGA-AAGACAG
64 TGACAA-ACAA
65937825 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
65937890 ACAAACAA
66 ACAAACAA
* * *
65937898 AAATT-AAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 AAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
*** * *
65937960 TTTGAAAGAC
64 TGACAAACAA
*
65937970 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
65938035 ACAAACAA
66 ACAAACAA
* * *
65938043 AAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
* *
65938108 TGAAAAACAG
64 TGACAAACAA
* *
65938118 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGAGTTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
65938183 ACAAACAA
66 ACAAACAA
* * * *
65938191 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
65938255 TTTAGAAACA
Statistics
Matches: 379, Mismatches: 41, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
71 37 0.10
72 25 0.07
73 174 0.46
74 39 0.10
75 104 0.27
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (73 bp):
AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
ACAAACAA
Found at i:65938184 original size:148 final size:146
Alignment explanation
Indices: 65937752--65938275 Score: 809
Period size: 148 Copynumber: 3.6 Consensus size: 146
65937742 AAAAAAACGG
** * *
65937752 AAATTGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTG
1 AAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG
*
65937817 AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
66 AAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
65937882 GATTTTTGACAAACAA
131 GATTTTTGACAAACAA
* *
65937898 AAATTAAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTT
1 AAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTT
* *
65937963 GAAAGAC--AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAGCTCTCGCAATATGAGT
65 GAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
65938026 TGATTTTTGACAAACAA
130 TGATTTTTGACAAACAA
* *
65938043 AAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
*
65938108 TGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAG
64 TGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
*
65938173 TTGAGTTTTGACAAACAA
129 TTGATTTTTGACAAACAA
* * *
65938191 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
* * * *
65938256 TTAGAAACATAAATTAAAAA
64 TGAAAAACAGAAATTGAAAA
65938276 AAAACGGAAA
Statistics
Matches: 353, Mismatches: 20, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
145 90 0.25
146 66 0.19
147 49 0.14
148 148 0.42
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (146 bp):
AAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG
AAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGACAAACAA
Found at i:65938302 original size:92 final size:91
Alignment explanation
Indices: 65938185--65938540 Score: 356
Period size: 99 Copynumber: 3.8 Consensus size: 91
65938175 GAGTTTTGAC
* * * *
65938185 AAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
65938250 TTTTTTTTAGAAACATAAATTAAAAAA
66 -TTTTTTAAGAAATATAAATTAAAAAA
* * *
65938277 AAACGGAAATTGAAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*** * ***
65938342 TTTGAAAAGCAGAATTTGTAAGGCAAAAATTGAA
66 TTTTTTAAG-A-AA--TATAA-ATTAAAA---AA
* *
65938376 AAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
65938441 TTTTTGAA-AAATAGAAATTAAAGTAAATTGA
66 TTTTTTAAGAAATATAAATT-AA--AAA---A
* * *
65938472 AAACAGAAATT-AAAATACATCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
65938536 TTTTT
66 TTTTT
65938541 GAAAAGCATA
Statistics
Matches: 219, Mismatches: 31, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
91 5 0.02
92 61 0.28
93 3 0.01
94 5 0.02
95 57 0.26
96 20 0.09
97 1 0.00
99 67 0.31
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.26
Consensus pattern (91 bp):
AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTAAGAAATATAAATTAAAAAA
Found at i:65938554 original size:95 final size:95
Alignment explanation
Indices: 65938180--65938554 Score: 417
Period size: 95 Copynumber: 3.9 Consensus size: 95
65938170 GAGTTGAGTT
* * * *
65938180 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
65938245 GTTGATTTTTTTTAGAAA-CATAAATT-AA-AAA
65 GTTGA--TTTTTGA-AAAGCAGAAATTAAAGAAA
* * *
65938276 ---AAAACGGAAATTGAAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
65938338 TTGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAA
66 TTGATTTTTGAAAAGCAGAA-AT-TAA---AGAAA
* *
65938371 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
**
65938436 GTTGATTTTTGAAAAATAGAAATTAAAGTAAA
65 GTTGATTTTTGAAAAGCAGAAATTAAAG-AAA
* * *
65938468 TTGAAAACAGAAATT-AAAATACATCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
65938532 TTGATTTTTGAAAAGCATAAATT
66 TTGATTTTTGAAAAGCAGAAATT
65938555 GAAATTACCT
Statistics
Matches: 240, Mismatches: 24, Indels: 31
0.81 0.08 0.11
Matches are distributed among these distances:
87 3 0.01
88 8 0.03
89 1 0.00
90 1 0.00
91 1 0.00
92 60 0.25
93 1 0.00
94 1 0.00
95 68 0.28
96 13 0.05
97 6 0.03
99 64 0.27
100 1 0.00
101 12 0.05
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.26
Consensus pattern (95 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAAAGCAGAAATTAAAGAAA
Found at i:65939590 original size:11 final size:12
Alignment explanation
Indices: 65939572--65939602 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
65939562 TTGATCCCTC
65939572 TCTCTTTTCTTT
1 TCTCTTTTCTTT
65939584 T-TCTTTTCTTT
1 TCTCTTTTCTTT
65939595 TCTCTTTT
1 TCTCTTTT
65939603 TTAAGATGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TCTCTTTTCTTT
Found at i:65949899 original size:250 final size:247
Alignment explanation
Indices: 65949461--65949964 Score: 900
Period size: 250 Copynumber: 2.0 Consensus size: 247
65949451 TTCAGGGGAA
* *
65949461 TACATTTCCCTACGGCTATACGGAGGTGAAAACCCCACGAAGACGCAGGTACGATGTATCCCGAA
1 TACATTTCCCTACGGCTATACGGAGGTGAAAACCCCACGAAGACACAGGTACAATGTATCCCGAA
*
65949526 AGCGATCCACTATCCTATACGGAGGTGAAGACCTACGAAGGAGTAGTTTTTACTTCCACTTAAGA
66 AGCGATCCACTATCCTATACGGAGGTGAAGACCTACAAAGGAGTAGTTTTTACTTCCACTTAAGA
65949591 GGGTGAAATCGACCAATAATGCGATGCGATATGCAAAGATACCTCAAAGAATTAAACCACTTAAA
131 GGGTGAAATCGACCAATAATGCGATGCGATATGCAAAGATACCTCAAAGAATTAAACCACTTAAA
* *
65949656 GCAAGCATATTATAAAGAGAGTCGTGAAAATAACAGACAACATGCAATGTAG
196 GCAAGCATATTATAAAGAGAGTCGCGAAAATAACAGACAACATGCAATGCAG
*
65949708 TACATTTCCCTATGGCTATACGGAGGTGAAAACCCCACGAAGACACAGGTACAAATGTATCCCGA
1 TACATTTCCCTACGGCTATACGGAGGTGAAAACCCCACGAAGACACAGGTAC-AATGTATCCCGA
*
65949773 AAGCGATCCACTATCCTATATGGAGGTGAAGACCTCACAAAGGAGTAGTTTTTTACTTCCACTTA
65 AAGCGATCCACTATCCTATACGGAGGTGAAGACCT-ACAAAGGAGTAG-TTTTTACTTCCACTTA
65949838 AGAGGGTGAAATCGACCAATAATGCGATGCGATATGCAAAGATACCTCAAAGAATTAAACCACTT
128 AGAGGGTGAAATCGACCAATAATGCGATGCGATATGCAAAGATACCTCAAAGAATTAAACCACTT
*
65949903 AAAGCAAGCATATTATGAAGAGAGTCGCGAAAATAACAGACAACATGCAATGCAG
193 AAAGCAAGCATATTATAAAGAGAGTCGCGAAAATAACAGACAACATGCAATGCAG
*
65949958 TAAATTT
1 TACATTT
65949965 AAAATCGATT
Statistics
Matches: 245, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
247 50 0.20
248 45 0.18
249 11 0.04
250 139 0.57
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (247 bp):
TACATTTCCCTACGGCTATACGGAGGTGAAAACCCCACGAAGACACAGGTACAATGTATCCCGAA
AGCGATCCACTATCCTATACGGAGGTGAAGACCTACAAAGGAGTAGTTTTTACTTCCACTTAAGA
GGGTGAAATCGACCAATAATGCGATGCGATATGCAAAGATACCTCAAAGAATTAAACCACTTAAA
GCAAGCATATTATAAAGAGAGTCGCGAAAATAACAGACAACATGCAATGCAG
Found at i:65950978 original size:22 final size:24
Alignment explanation
Indices: 65950920--65950987 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 24
65950910 GTATGAAAAA
* *
65950920 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
65950944 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
65950968 -AAAATATATACATAAGATAA
1 AAAAATATATACATAATATAA
65950988 CATGTAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 18 0.47
24 1 0.03
25 19 0.50
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:65951123 original size:19 final size:19
Alignment explanation
Indices: 65951081--65951124 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
65951071 AGAATAAACC
65951081 TAAT-ATATTAAAAATATA
1 TAATAATATTAAAAATATA
65951099 TAAATAATATT-AAAATATAA
1 T-AATAATATTAAAAATAT-A
65951119 TAATAA
1 TAATAA
65951125 CAAAAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 1 0.04
19 15 0.65
20 7 0.30
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TAATAATATTAAAAATATA
Found at i:65951446 original size:16 final size:16
Alignment explanation
Indices: 65951408--65951446 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
65951398 TCCAAAAAAA
*
65951408 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
65951424 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
65951440 AATAACT
1 AAAAACT
65951447 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:65951641 original size:30 final size:30
Alignment explanation
Indices: 65951605--65951699 Score: 133
Period size: 30 Copynumber: 3.3 Consensus size: 30
65951595 AGGTACAAGT
*
65951605 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
* *
65951635 GGTGGTGGAACAAATGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
65951665 ---GGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
65951692 GGTGGTGG
1 GGTGGTGG
65951700 CAAAGGCTAG
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
27 24 0.43
30 32 0.57
ACGTcount: A:0.21, C:0.06, G:0.48, T:0.24
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:65951679 original size:27 final size:27
Alignment explanation
Indices: 65951608--65951696 Score: 115
Period size: 27 Copynumber: 3.2 Consensus size: 27
65951598 TACAAGTGGT
*
65951608 GGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGAGCAAGTGTGGCTAGTGGAGTA
* *
65951635 GGTGGTGGAACAAATGTGGCTAGTGGAGTA
1 ---GGTGGAGCAAGTGTGGCTAGTGGAGTA
*
65951665 GGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGAGCAAGTGTGGCTAGTGGAGTA
65951692 GGTGG
1 GGTGG
65951697 TGGCAAAGGC
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
27 29 0.55
30 24 0.45
ACGTcount: A:0.22, C:0.07, G:0.47, T:0.24
Consensus pattern (27 bp):
GGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:65955660 original size:3 final size:3
Alignment explanation
Indices: 65955652--65955682 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
65955642 CTTTTTCTCT
65955652 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
65955683 CTCTCTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:65961341 original size:73 final size:73
Alignment explanation
Indices: 65961254--65961439 Score: 363
Period size: 73 Copynumber: 2.5 Consensus size: 73
65961244 ACAACTTGAC
65961254 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
65961319 CACTAACA
66 CACTAACA
65961327 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
65961392 CACTAACA
66 CACTAACA
*
65961400 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
65961440 AATAATAATA
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 112 1.00
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:65961448 original size:3 final size:3
Alignment explanation
Indices: 65961440--65961480 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
65961430 ATTACATCCA
65961440 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
65961481 AACATGTGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:65965780 original size:73 final size:73
Alignment explanation
Indices: 65965693--65965878 Score: 363
Period size: 73 Copynumber: 2.5 Consensus size: 73
65965683 ACAACTTGAC
65965693 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
65965758 CACTAACA
66 CACTAACA
65965766 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
65965831 CACTAACA
66 CACTAACA
*
65965839 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
65965879 AATAATAATA
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 112 1.00
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:65966962 original size:10 final size:10
Alignment explanation
Indices: 65966949--65966975 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
65966939 AAAATAATGT
65966949 TAAATTATAA
1 TAAATTATAA
65966959 TAAATTATAA
1 TAAATTATAA
65966969 TAAATTA
1 TAAATTA
65966976 AAAGTTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
TAAATTATAA
Found at i:65971233 original size:10 final size:11
Alignment explanation
Indices: 65971215--65971255 Score: 52
Period size: 10 Copynumber: 4.0 Consensus size: 11
65971205 TAAATTTTAA
65971215 AAGATAAATAC
1 AAGATAAATAC
65971226 AA-ATAAAT-C
1 AAGATAAATAC
*
65971235 AAGATAATTA-
1 AAGATAAATAC
65971245 AAGATAAATAC
1 AAGATAAATAC
65971256 CAAAATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
9 3 0.12
10 20 0.80
11 2 0.08
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (11 bp):
AAGATAAATAC
Found at i:65971851 original size:139 final size:139
Alignment explanation
Indices: 65971601--65971877 Score: 484
Period size: 139 Copynumber: 2.0 Consensus size: 139
65971591 TATACTATTT
* *
65971601 TCACTAATTATTCAAATAAATAATTTTATAAGTCAAATTACTATATATACGTATTTTTTTATAGT
1 TCACTAATTATTCAAATAAATAATTTTATAAGTCAAATTACTATATATACATATTTTATTATAGT
* *
65971666 TAACTCATAAATTTTTCAAATTAAGAAAATTCACCCTCAAATTGAATTTTTTAACACCAATAAAA
66 TAACTCATAAATTTTTCAAATTAAAAAAATTCACCCTCAAATTGAATTTTTTAACACCAACAAAA
65971731 ATCGAGTCA
131 ATCGAGTCA
65971740 TCACTAATTATTCAAATAAATAATTTTATAAGTCAAATTACTATATATACATATTTTATTATAGT
1 TCACTAATTATTCAAATAAATAATTTTATAAGTCAAATTACTATATATACATATTTTATTATAGT
* *
65971805 TAACTCATAAAATTTTT-AATTTAAAAAAATTCACTCTCAAATTGAATTTTTTAACACCAACAAA
66 TAACTCAT-AAATTTTTCAAATTAAAAAAATTCACCCTCAAATTGAATTTTTTAACACCAACAAA
65971869 AATCGAGTC
130 AATCGAGTC
65971878 GTTACAGGCA
Statistics
Matches: 131, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
139 123 0.94
140 8 0.06
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.39
Consensus pattern (139 bp):
TCACTAATTATTCAAATAAATAATTTTATAAGTCAAATTACTATATATACATATTTTATTATAGT
TAACTCATAAATTTTTCAAATTAAAAAAATTCACCCTCAAATTGAATTTTTTAACACCAACAAAA
ATCGAGTCA
Found at i:65972988 original size:2 final size:2
Alignment explanation
Indices: 65972981--65973005 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
65972971 ATCTAAAATT
65972981 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
65973006 TTAACGGCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65978464 original size:3 final size:3
Alignment explanation
Indices: 65978456--65978506 Score: 50
Period size: 3 Copynumber: 16.0 Consensus size: 3
65978446 AATACGGGTG
*
65978456 ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA ATA CATA TATA TATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA -ATA -ATA ATA
65978504 ATA
1 ATA
65978507 GTAGTCAGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 1 0.02
3 31 0.72
4 11 0.26
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:65978603 original size:12 final size:12
Alignment explanation
Indices: 65978579--65978658 Score: 74
Period size: 12 Copynumber: 6.6 Consensus size: 12
65978569 GAGAGGGTAT
65978579 ATATAATATAATA
1 ATATAA-ATAATA
65978592 ATATAAATAATA
1 ATATAAATAATA
* *
65978604 ATATATACATGAGA
1 ATATA-A-ATAATA
65978618 A-AT-AATAATA
1 ATATAAATAATA
65978628 ATATAAATAATA
1 ATATAAATAATA
* *
65978640 GTAAAAATAATA
1 ATATAAATAATA
*
65978652 AAATAAA
1 ATATAAA
65978659 AAAAATAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
10 5 0.09
11 3 0.06
12 32 0.59
13 9 0.17
14 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:65978654 original size:9 final size:9
Alignment explanation
Indices: 65978588--65978666 Score: 54
Period size: 9 Copynumber: 8.6 Consensus size: 9
65978578 TATATAATAT
*
65978588 AATAATATA
1 AATAATAAA
65978597 AATAATAATA
1 AATAATAA-A
* *
65978607 TATACATGAGA
1 AATA-AT-AAA
*
65978618 AATAATAAT
1 AATAATAAA
65978627 AAT-ATAAA
1 AATAATAAA
*
65978635 TAATAGTAAA
1 -AATAATAAA
65978645 AATAAT-AA
1 AATAATAAA
*
65978653 AATAAAAAA
1 AATAATAAA
65978662 AATAA
1 AATAA
65978667 AACAAAGCTC
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
8 11 0.20
9 26 0.48
10 10 0.19
11 6 0.11
12 1 0.02
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (9 bp):
AATAATAAA
Found at i:65979199 original size:30 final size:30
Alignment explanation
Indices: 65979165--65979280 Score: 180
Period size: 30 Copynumber: 3.9 Consensus size: 30
65979155 ATTTGATGGT
65979165 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
* * *
65979195 GTAGGTGCAAGTGGGAGGCAATGTGGTAGA
1 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
*
65979225 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
65979255 GTAGGTGCAAGTGGGA-AGCAAGGTGG
1 GTAGGTGCAAGTGGGAGA-CAAGGTGG
65979281 CTAGGGTTTT
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
30 79 1.00
ACGTcount: A:0.26, C:0.07, G:0.50, T:0.17
Consensus pattern (30 bp):
GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
Found at i:65979258 original size:60 final size:60
Alignment explanation
Indices: 65979165--65979280 Score: 205
Period size: 60 Copynumber: 1.9 Consensus size: 60
65979155 ATTTGATGGT
* *
65979165 GTAGGTGCAAGTGGGAGACAAGGTGGTGGAGTAGGTGCAAGTGGGAGGCAATGTGGTAGA
1 GTAGGTGCAAGTGGGAGACAAGGTGGTGGAGTAGGTGCAAGTGGGAAGCAAGGTGGTAGA
*
65979225 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGAGTAGGTGCAAGTGGGAAGCAAGGTGG
1 GTAGGTGCAAGTGGGAGACAAGGTGGTGGAGTAGGTGCAAGTGGGAAGCAAGGTGG
65979281 CTAGGGTTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.26, C:0.07, G:0.50, T:0.17
Consensus pattern (60 bp):
GTAGGTGCAAGTGGGAGACAAGGTGGTGGAGTAGGTGCAAGTGGGAAGCAAGGTGGTAGA
Found at i:65979903 original size:43 final size:42
Alignment explanation
Indices: 65979841--65980638 Score: 320
Period size: 43 Copynumber: 18.6 Consensus size: 42
65979831 CGCCTTCGAT
* * *
65979841 CTGTTTCCCTACTACTTAGGGTGCTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTAGGG-GTTAAGATCTGTAAATTTAGC
* * * ** * *
65979884 CTGTTACCCTACTGTTTAGGGGTTAAG-GCTTGTCACCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTAAGATC-TGTAAATTTAG-C
* *
65979927 CTGTTTCCCTACTGTTTAGGGGGTTTAAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGCTTA-GGGG-TTAAGATCTGTAAAT-TT-AGC
* * ** * *
65979973 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTCACCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATC-TGTAAATTTAG-C
* * *
65980017 CTGTTTCCCTACTGTTTA--GG----G-TCTGTAAATTTAAC
1 CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAGC
* ** * *
65980052 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCT-TATTGTCTTTGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTA-AAT-TTAG-C
* * *
65980096 CTGTTTCCCTACTGCTTAGAGGGTTAAGATCTATAAATTCAGC
1 CTGTTACCCTACTGCTTAG-GGGTTAAGATCTGTAAATTTAGC
* * ** ** **** * *
65980139 CTGTTACCCCACTGCTCAGGGGTTTAAGGCCCATCGCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTAAATTTAG-C
* *
65980183 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* * ** **** * *
65980226 CTATTACCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTCGAT
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAG-C
* * *
65980270 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAAC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
** ** * * *
65980313 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCAT-CATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTAAAT-TTAG-C
* *
65980357 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* * * *
65980400 CTGCTACCCTACTGCTTAGGGGGTTAAAATCTATAAATTCAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* * ** * *
65980443 CTGTTACCCTACTGTTTAGGGGTTTAAGACCCT-T-CGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGA-TCTGTAAAT-TTAG-C
* * * * *
65980487 CTGCT-CCACTACTGCTTAGGGAGATAAGATCTG-CAATTTGGT
1 CTGTTACC-CTACTGCTTAGGG-GTTAAGATCTGTAAATTTAGC
* * ** * *
65980529 TTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-T-CGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGA-TCTGTAAAT-TTAG-C
* * * *
65980573 CTGTTTCCCTACTGCATAGGAGGTTAAGATCTGGAAATTCAGC
1 CTGTTACCCTACTGCTTAGG-GGTTAAGATCTGTAAATTTAGC
65980616 C-GTTACCCTACTGCTTAGGGGTT
1 CTGTTACCCTACTGCTTAGGGGTT
65980639 TAAGGCCCTT
Statistics
Matches: 546, Mismatches: 161, Indels: 98
0.68 0.20 0.12
Matches are distributed among these distances:
35 16 0.03
36 6 0.01
37 4 0.01
41 8 0.01
42 71 0.13
43 198 0.36
44 178 0.33
45 43 0.08
46 21 0.04
47 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (42 bp):
CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAGC
Found at i:65979904 original size:87 final size:87
Alignment explanation
Indices: 65979801--65980426 Score: 838
Period size: 87 Copynumber: 7.3 Consensus size: 87
65979791 TTCAGCTTGG
* * *
65979801 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTACTTAGGGTGCT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
65979866 AAGATCTGTAAATTTAGCCTGT
66 AAGATCTGTAAATTTAGCCTGT
* *** * *
65979888 TACCCTACTGTTTAGGGG-TTAAGGCTTGTCACCTTCGATCTGTTTCCCTACTGTTTAGGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGG-T
65979952 TAAGATCTGTAAATCTTCAGCCTGT
65 TAAGATCTGTAAAT-TT-AGCCTGT
*** * *
65979977 TACCCTACTGCTTAGGGGTTTAAGGCTTGTCACCTTCGATCTGTTTCCCTACTGTTTA---GG--
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
*
65980037 --G-TCTGTAAATTTAACCTGT
66 AAGATCTGTAAATTTAGCCTGT
** * * * *
65980056 TACCCTACTGCTTAGGGGTTTAAGGCTTATTGTCTTTGATCTGTTTCCCTACTGCTTAGAGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
* *
65980121 AAGATCTATAAATTCAGCCTGT
66 AAGATCTGTAAATTTAGCCTGT
* *
65980143 TACCCCACTGCTCAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
* *
65980208 AAGATCTGTAAATTCAGCCTAT
66 AAGATCTGTAAATTTAGCCTGT
* *
65980230 TACCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
* *
65980295 AAGATCTGTAAATTCAACCTGT
66 AAGATCTGTAAATTTAGCCTGT
** *
65980317 TACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCTACTGCTTAGGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
*
65980382 AAGATCTGTAAATTTAGCCTGC
66 AAGATCTGTAAATTTAGCCTGT
*
65980404 TACCCTACTGCTTAGGGGGTTAA
1 TACCCTACTGCTTAGGGGTTTAA
65980427 AATCTATAAA
Statistics
Matches: 482, Mismatches: 45, Indels: 24
0.87 0.08 0.04
Matches are distributed among these distances:
79 58 0.12
80 2 0.00
81 9 0.02
82 3 0.01
86 38 0.08
87 307 0.64
88 2 0.00
89 24 0.05
90 39 0.08
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.35
Consensus pattern (87 bp):
TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
AAGATCTGTAAATTTAGCCTGT
Found at i:65980036 original size:44 final size:44
Alignment explanation
Indices: 65979801--65980937 Score: 329
Period size: 44 Copynumber: 26.4 Consensus size: 44
65979791 TTCAGCTTGG
*** **
65979801 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGT
1 TACCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGT
* * * * * * * *
65979845 TTCCCTACTACTTA-GGGTGCTAA-GATCTGTAAATTTAG-CCTGT
1 TACCCTACTGCTTAGGGGT-TTAAGGCT-TGTCAACTTCGATCTGT
* *
65979888 TACCCTACTGTTTAGGGG-TTAAGGCTTGTCACCTTCGATCTGT
1 TACCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGT
* * * * *
65979931 TTCCCTACTGTTTAGGGGGTTTAA-GATCTGTAAATCTTC-AGCCTGT
1 TACCCTACTGCTTA-GGGGTTTAAGGCT-TGTCAA-CTTCGA-TCTGT
*
65979977 TACCCTACTGCTTAGGGGTTTAAGGCTTGTCACCTTCGATCTGT
1 TACCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGT
* * * ** *
65980021 TTCCCTACTGTTTA-GGG--T----C-TGT-AAATTTAACCTGT
1 TACCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGT
* *** *
65980056 TACCCTACTGCTTAGGGGTTTAAGGCTTATTGTCTTTGATCTGT
1 TACCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGT
* * * * *
65980100 TTCCCTACTGCTTAGAGGG-TTAA-GATCTAT-AAATTC-AGCCTGT
1 TACCCTACTGCTTAG-GGGTTTAAGGCT-TGTCAACTTCGA-TCTGT
* * *** **
65980143 TACCCCACTGCTCAGGGGTTTAAGGCCCATCGCCTTCGATCTGT
1 TACCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGT
* * * * * *
65980187 TTCCCTACTGCTTAGGGGGTTAA-GATCTGT-AAATTC-AGCCTAT
1 TACCCTACTGCTTAGGGGTTTAAGGCT-TGTCAACTTCGA-TCTGT
* ** **
65980230 TACCCTACTGCTTAGGGGGTTAAGG-TCCATCGCCTTCGATCTGT
1 TACCCTACTGCTTAGGGGTTTAAGGCT-TGTCAACTTCGATCTGT
* * * * * *
65980274 TTCCCTACTGCTTAGGGGGTTAA-GATCTGT-AAATTCAACCTGT
1 TACCCTACTGCTTAGGGGTTTAAGGCT-TGTCAACTTCGATCTGT
*** * *
65980317 TACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTAT
1 TACCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGT
* * * * * * * *
65980361 TTCCCTACTGCTTAGGGGGTTAA-GATCTGTAAATTTAG-CCTGC
1 TACCCTACTGCTTAGGGGTTTAAGGCT-TGTCAACTTCGATCTGT
* ** * * *
65980404 TACCCTACTGCTTAGGGGGTTAA-AATCTAT-AAATTC-AGCCTGT
1 TACCCTACTGCTTAGGGGTTTAAGGCT-TGTCAACTTCGA-TCTGT
* * * ** *
65980447 TACCCTACTGTTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTGC
1 TACCCTACTGCTTAGGGGTTTAAG-GCTTGTCAACTTCGATCTGT
* * * * *
65980491 T-CCACTACTGCTTAGGGAG-ATAA-GATCTG-CAA-TTTGGTTTGT
1 TACC-CTACTGCTTAGGG-GTTTAAGGCT-TGTCAACTTCGATCTGT
* * **
65980533 TACCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTGT
1 TACCCTACTGCTTAGGGGTTTAAG-GCTTGTCAACTTCGATCTGT
* * * * * * *
65980577 TTCCCTACTGCATAGGAGG-TTAA-GATCTG-GAAATTC-AGCCGT
1 TACCCTACTGCTTAGG-GGTTTAAGGCT-TGTCAACTTCGATCTGT
*
65980619 TACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTC-A-TT-GATCTGC
1 TACCCTACTGCTTAGGGGTTTAAGG--CTT-GTCAACTTCGATCTGT
* * ** * *
65980663 T-CCACTACTGCTTAGGGAGATAAAATC-TG-CAA-TTTGGTCTGT
1 TACC-CTACTGCTTAGGG-GTTTAAGGCTTGTCAACTTCGATCTGT
** * ** *
65980705 TACCCTACTGCTTAGGGGTTTAAAACCCT-TCGTCTTCGATCTGC
1 TACCCTACTGCTTAGGGGTTT-AAGGCTTGTCAACTTCGATCTGT
* * * *
65980749 T-CCACTACTGCTTAGGGAG-ATAA-GATCTG-CAA-TTTGGTCTGT
1 TACC-CTACTGCTTAGGG-GTTTAAGGCT-TGTCAACTTCGATCTGT
* * ** *
65980791 TACCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTGC
1 TACCCTACTGCTTAGGGGTTTAAG-GCTTGTCAACTTCGATCTGT
*** * *** *
65980835 T-CCACTACTGCTTAGGGAAATAA-GATCAACAA-TTCGGTCTGT
1 TACC-CTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGT
* * * *
65980877 TACCCTACTGCTTAGGGGTTTAAGGCCTATCAACCTCGATTTGT
1 TACCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGT
*
65980921 TTCCCTACTGCTTAGGG
1 TACCCTACTGCTTAGGG
65980938 AGATAAGATC
Statistics
Matches: 778, Mismatches: 228, Indels: 174
0.66 0.19 0.15
Matches are distributed among these distances:
35 20 0.03
36 6 0.01
37 1 0.00
38 1 0.00
40 1 0.00
41 11 0.01
42 138 0.18
43 229 0.29
44 309 0.40
45 40 0.05
46 22 0.03
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (44 bp):
TACCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGT
Found at i:65980483 original size:130 final size:129
Alignment explanation
Indices: 65980276--65980813 Score: 387
Period size: 130 Copynumber: 4.2 Consensus size: 129
65980266 CGATCTGTTT
* *
65980276 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAG
1 CCCTACTGCTTAGGGGGTTAAAATCTATAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAG
* ** * *
65980341 GCCCATCATCTTCGATCTATTTCC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGCT
66 ACCCATCATCTTCGATCT-GCTCCACTACTGCTTAGGGAGATAAGATCTG-AAATTTAGCCTGCT
65980405 A
129 A
* *
65980406 CCCTACTGCTTAGGGGGTTAAAATCTATAAATTCAGCCTGTTACCCTACTGTTTAGGGGTTTAAG
1 CCCTACTGCTTAGGGGGTTAAAATCTATAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAG
* * * * ** *
65980471 ACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTGGTTTGTTA
66 ACCCATCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATTTAGCCTGCTA
* ** *** * * * *
65980535 CCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTGTTTCCCTACTGCATAGGAGG-TT
1 CCCTACTGCTTAGGGGGTTAA-AATCTAT-AAATTCAACCTGTTACCCTACTGCTTAGG-GGTTT
* * ** * * * * ** ** *
65980598 AAGA-TC-TGGAAATTC-AGCCGTTACC-CTACTGCTTAGGG-GTTTAAGGCCCTTCGTCATTGA
63 AAGACCCAT-CATCTTCGATCTGCT-CCACTACTGCTTAGGGAG-ATAA-GATC-T-GAAATTTA
*
65980658 -TCTGCT-
122 GCCTGCTA
* * ** ****
65980664 CCACTACTGCTTAGGGAGATAAAATCT-GCAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAA
1 CC-CTACTGCTTAGGGGGTTAAAATCTATAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAA
* * * * * * *
65980728 AACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCTGTTA
65 GACCCATCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATTTAGCCTGCTA
*
65980793 CCCTACTGCTTAGGGGTTTAA
1 CCCTACTGCTTAGGGGGTTAA
65980814 GACCCTTCGT
Statistics
Matches: 311, Mismatches: 78, Indels: 40
0.72 0.18 0.09
Matches are distributed among these distances:
127 7 0.02
128 70 0.23
129 57 0.18
130 170 0.55
131 7 0.02
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (129 bp):
CCCTACTGCTTAGGGGGTTAAAATCTATAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAG
ACCCATCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATTTAGCCTGCTA
Found at i:65980534 original size:86 final size:86
Alignment explanation
Indices: 65980443--65980952 Score: 726
Period size: 86 Copynumber: 5.9 Consensus size: 86
65980433 TAAATTCAGC
*
65980443 CTGTTACCCTACTGTTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
65980508 AGATAAGATCTGCAATTTGGT
66 AGATAAGATCTGCAATTTGGT
* * *
65980529 TTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCC-CTACTGCATA-G
1 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTG-CTCCACTACTGCTTAGG
* * **
65980592 GAGGTTAAGATCTGGAAATTCAG-
65 GA-GATAAGATCT-GCAATTTGGT
* *
65980615 CCGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCATT-GATCTGCTCCACTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTC-TTCGATCTGCTCCACTACTGCTTAGG
*
65980679 GAGATAAAATCTGCAATTTGGT
65 GAGATAAGATCTGCAATTTGGT
*
65980701 CTGTTACCCTACTGCTTAGGGGTTTAAAACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
65980766 AGATAAGATCTGCAATTTGGT
66 AGATAAGATCTGCAATTTGGT
65980787 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* ** *
65980852 AAATAAGATCAACAATTCGGT
66 AGATAAGATCTGCAATTTGGT
* ** * * *
65980873 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCCTATCAACCTCGATTTGTTTCC-CTACTGCTTAG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTG-CTCCACTACTGCTTAG
65980936 GGAGATAAGATCTGCAA
64 GGAGATAAGATCTGCAA
65980953 ATTCACTGAT
Statistics
Matches: 378, Mismatches: 36, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
85 17 0.04
86 344 0.91
87 17 0.04
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.33
Consensus pattern (86 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
AGATAAGATCTGCAATTTGGT
Found at i:65988144 original size:3 final size:3
Alignment explanation
Indices: 65988133--65988215 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
65988123 TTTTATTTTT
* *
65988133 TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TT- TCTCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-T-A
65988178 TGTA TATA TTA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 T-TA T-TA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
65988216 ATATACCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 7 0.11
3 49 0.75
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:65988160 original size:24 final size:24
Alignment explanation
Indices: 65988132--65988213 Score: 76
Period size: 24 Copynumber: 3.2 Consensus size: 24
65988122 GTTTTATTTT
65988132 TTTATTTTATTATTTTTACTATTA
1 TTTATTTTATTATTTTTACTATTA
*
65988156 TTTATATTATTATTATTT-CTCATGTA
1 TTTATTTTATTATT-TTTACT-AT-TA
* * *
65988182 TATATTATTATTATTTATATTATTA
1 TTTATT-TTATTATTTTTACTATTA
65988207 TTATATT
1 TT-TATT
65988214 ATATATACCC
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
24 15 0.33
25 8 0.17
26 14 0.30
27 9 0.20
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (24 bp):
TTTATTTTATTATTTTTACTATTA
Found at i:65988169 original size:15 final size:15
Alignment explanation
Indices: 65988138--65988217 Score: 54
Period size: 16 Copynumber: 4.9 Consensus size: 15
65988128 TTTTTTTATT
* *
65988138 TTATTATTTTTACTA
1 TTATTATTTATATTA
65988153 TTATTTATATTATTATTA
1 TTA-TTAT-TTA-TATTA
*
65988171 TT-TCTCATGTATATATTA
1 TTAT-T-ATTTATAT--TA
65988189 TTATTATTTATATTA
1 TTATTATTTATATTA
65988204 TTATTATATTATAT
1 TTATTAT-TTATAT
65988218 ATACCCTCTC
Statistics
Matches: 52, Mismatches: 4, Indels: 17
0.71 0.05 0.23
Matches are distributed among these distances:
15 12 0.23
16 14 0.27
17 12 0.23
18 13 0.25
19 1 0.02
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (15 bp):
TTATTATTTATATTA
Found at i:65995325 original size:30 final size:30
Alignment explanation
Indices: 65995289--65995372 Score: 150
Period size: 30 Copynumber: 2.8 Consensus size: 30
65995279 AACCCTAGCT
65995289 ACCTTGCCTCCCACTTGCACCTACTCCACC
1 ACCTTGCCTCCCACTTGCACCTACTCCACC
*
65995319 ACCTTGCCTCCCACTTGCACTTACTCCACC
1 ACCTTGCCTCCCACTTGCACCTACTCCACC
*
65995349 ACCTTGTCTCCCACTTGCACCTAC
1 ACCTTGCCTCCCACTTGCACCTAC
65995373 ACCATCAAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.17, C:0.50, G:0.07, T:0.26
Consensus pattern (30 bp):
ACCTTGCCTCCCACTTGCACCTACTCCACC
Found at i:65995933 original size:21 final size:18
Alignment explanation
Indices: 65995880--65995947 Score: 73
Period size: 18 Copynumber: 3.6 Consensus size: 18
65995870 ATTTTTTTAT
* *
65995880 TTTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTA
65995899 TTTATATTATTATTATTA
1 TTTATATTATTATTATTA
*
65995917 TTTCTCATGTATATATTATTA
1 TTTAT-AT-TAT-TATTATTA
65995938 TTTATATTAT
1 TTTATATTAT
65995948 ATATACCCTC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
18 16 0.38
19 9 0.21
20 5 0.12
21 12 0.29
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (18 bp):
TTTATATTATTATTATTA
Done.