Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 216 of 250
Found at i:66900547 original size:22 final size:23
Alignment explanation
Indices: 66900476--66900547 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 23
66900466 AAAAAAAATC
66900476 ATATATAATGTATAATAAATTTG-AA
1 ATATATAA--TAT-ATAAATTTGAAA
**
66900501 ATATATTTTATATAAAATTCT-AAA
1 ATATATAATATAT-AAATT-TGAAA
66900525 ATATATAAT-TATAAATTTGAAA
1 ATATATAATATATAAATTTGAAA
66900547 A
1 A
66900548 AGTCAAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
21 1 0.03
22 11 0.28
23 11 0.28
24 10 0.26
25 6 0.15
ACGTcount: A:0.53, C:0.01, G:0.04, T:0.42
Consensus pattern (23 bp):
ATATATAATATATAAATTTGAAA
Found at i:66900809 original size:18 final size:17
Alignment explanation
Indices: 66900786--66900826 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
66900776 ATTTCAACTA
66900786 ATTTTTTTCAATAATTTT
1 ATTTTTTTCAA-AATTTT
**
66900804 ATTTTTTTGTAAATTTT
1 ATTTTTTTCAAAATTTT
66900821 ATTTTT
1 ATTTTT
66900827 ATAATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (17 bp):
ATTTTTTTCAAAATTTT
Found at i:66913814 original size:55 final size:55
Alignment explanation
Indices: 66913730--66913841 Score: 188
Period size: 55 Copynumber: 2.0 Consensus size: 55
66913720 GGATTGTAGG
*
66913730 TAAAAATACATAGTTCTTCAGCATTTTCATCAAGAAATGCTATACAATGAATAAA
1 TAAAAATACATAGTTCTGCAGCATTTTCATCAAGAAATGCTATACAATGAATAAA
* * *
66913785 TAAAAATACATGGTTCTGCAGTATTTTCATCAAGGAATGCTATACAATGAATAAA
1 TAAAAATACATAGTTCTGCAGCATTTTCATCAAGAAATGCTATACAATGAATAAA
66913840 TA
1 TA
66913842 TCAGTCATCA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.31
Consensus pattern (55 bp):
TAAAAATACATAGTTCTGCAGCATTTTCATCAAGAAATGCTATACAATGAATAAA
Found at i:66916040 original size:20 final size:20
Alignment explanation
Indices: 66916007--66916051 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
66915997 TGCAAGCAGT
*
66916007 AAAATTTCCCCCAAAAATCCA
1 AAAATTTCCACC-AAAATCCA
*
66916028 AAAATTT-CACCAAAATTCA
1 AAAATTTCCACCAAAATCCA
66916047 AAAAT
1 AAAAT
66916052 ATAAAAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 12 0.55
20 3 0.14
21 7 0.32
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.22
Consensus pattern (20 bp):
AAAATTTCCACCAAAATCCA
Found at i:66916406 original size:30 final size:31
Alignment explanation
Indices: 66916361--66916426 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
66916351 AAATCATCAT
*
66916361 TAAACTATTTAAAA-TTTTCATTTAAATTAC
1 TAAACTATTTAAAATTTTTCATTTAAATAAC
* * *
66916391 TAAATTATTTGAAATTTTTTATTTAAATAAC
1 TAAACTATTTAAAATTTTTCATTTAAATAAC
66916422 TAAAC
1 TAAAC
66916427 AATTGTTAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 12 0.40
31 18 0.60
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.47
Consensus pattern (31 bp):
TAAACTATTTAAAATTTTTCATTTAAATAAC
Found at i:66918019 original size:15 final size:16
Alignment explanation
Indices: 66917996--66918031 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
66917986 TGATATATCT
66917996 CTTT-TTTTTT-AATA
1 CTTTATTTTTTAAATA
66918010 -TTTATTTTTTAAATA
1 CTTTATTTTTTAAATA
66918025 CTTTATT
1 CTTTATT
66918032 ATATTCTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 3 0.16
14 6 0.32
15 4 0.21
16 6 0.32
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (16 bp):
CTTTATTTTTTAAATA
Found at i:66944498 original size:51 final size:51
Alignment explanation
Indices: 66944438--66944537 Score: 182
Period size: 51 Copynumber: 2.0 Consensus size: 51
66944428 GCCTGTACGA
*
66944438 TGGCTTGATTAAGAACATCCGTTAAACGTTTGATTCAATGGGTAAGTATAT
1 TGGCTTGATTAAGAACATCCGTTAAACGTTTGATTCAATGGGCAAGTATAT
*
66944489 TGGCTTGATTAAGAACATCCGTTAAATGTTTGATTCAATGGGCAAGTAT
1 TGGCTTGATTAAGAACATCCGTTAAACGTTTGATTCAATGGGCAAGTAT
66944538 TTGAGTTGCC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (51 bp):
TGGCTTGATTAAGAACATCCGTTAAACGTTTGATTCAATGGGCAAGTATAT
Found at i:66945249 original size:58 final size:59
Alignment explanation
Indices: 66945181--66945319 Score: 155
Period size: 58 Copynumber: 2.4 Consensus size: 59
66945171 TAGTAGGACT
66945181 TAAACTTTTTTTTGTCCAAGTTGATTC-TTAAACTTGACAA-TAGTTC-CTACATT-AGAGTC
1 TAAACTTTTTTTTGTCCAAGTT-ATTCGTTAAACTTGACAATTA-TTCTC-ACATTGAGA-TC
* * ** *
66945240 TAAATTTTTTTTTGT-CAAATTATTCGTTGGACTTGACAATTATTCTCACATTGAGATT
1 TAAACTTTTTTTTGTCCAAGTTATTCGTTAAACTTGACAATTATTCTCACATTGAGATC
66945298 TAAA-TTTTTTTTGTCCAAGTTA
1 TAAACTTTTTTTTGTCCAAGTTA
66945320 GTCATTGATA
Statistics
Matches: 69, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
57 14 0.20
58 35 0.51
59 20 0.29
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.47
Consensus pattern (59 bp):
TAAACTTTTTTTTGTCCAAGTTATTCGTTAAACTTGACAATTATTCTCACATTGAGATC
Found at i:66957239 original size:21 final size:21
Alignment explanation
Indices: 66957214--66957278 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
66957204 TAGCCTTCGG
66957214 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
* * *
66957235 GCTTCAG-TTAGC-CTT-CGG
1 GCTTCCGTTTAGCACTTATGT
66957253 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
66957274 GCTTC
1 GCTTC
66957279 AGTTAGATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 7 0.20
19 8 0.23
20 8 0.23
21 12 0.34
ACGTcount: A:0.12, C:0.26, G:0.22, T:0.40
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTATGT
Found at i:66957296 original size:39 final size:39
Alignment explanation
Indices: 66957196--66957284 Score: 178
Period size: 39 Copynumber: 2.3 Consensus size: 39
66957186 GCTCTGGTGA
66957196 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
66957235 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
66957274 GCTTCAGTTAG
1 GCTTCAGTTAG
66957285 ATTTCTGGCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.13, C:0.25, G:0.24, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:66959263 original size:3 final size:3
Alignment explanation
Indices: 66959255--66959527 Score: 147
Period size: 3 Copynumber: 91.7 Consensus size: 3
66959245 CAATTTAACC
* *
66959255 TAT TAT TAT TAAT TAT TAT T-T TAC TAT TAT TAT CTAA TA- TAT TAT
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
* *** * * *
66959300 CAT TAT CGC TAT TAT TAC T-T TAT TAT TGT AACT TAAT GTAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T T-AT -TAT TAT TAT
* *
66959347 TAT TACT T-T TAT T-T TCAT TAT CAT TAT TAT TAT TAT TAT TAT TGT
1 TAT TA-T TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * **
66959392 TAT TAT TAT TAT TA- TAT TAC TAT CAT TAT CAT TAT TAT TAT TAC GGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
66959439 TAG CAT TAT T-T TCAT TAC TAT TA- TAT T-T TAT TGAT TA- TAT TAT
1 TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT
* * * * *
66959482 TA- TATT TGT TA- TAT TAT CAT TAT TAT TCT TAC TAT TGT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
66959526 TA
1 TA
66959528 CTACTGTCGA
Statistics
Matches: 199, Mismatches: 49, Indels: 44
0.68 0.17 0.15
Matches are distributed among these distances:
2 23 0.12
3 155 0.78
4 19 0.10
5 2 0.01
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:66961299 original size:18 final size:17
Alignment explanation
Indices: 66961263--66961395 Score: 178
Period size: 18 Copynumber: 7.5 Consensus size: 17
66961253 AATCATATCT
66961263 TCTAAGATTGTATATCATA
1 TCTAAGATTG-A-ATCATA
66961282 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
66961300 TCTAAGATT-ATATCATA
1 TCTAAGATTGA-ATCATA
66961317 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
*
66961335 TCTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
66961352 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
* *
66961370 TTTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
66961387 TCTAAGATT
1 TCTAAGATT
66961396 ACATATCATT
Statistics
Matches: 104, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
16 1 0.01
17 45 0.43
18 46 0.44
19 12 0.12
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.39
Consensus pattern (17 bp):
TCTAAGATTGAATCATA
Found at i:66961316 original size:35 final size:35
Alignment explanation
Indices: 66961263--66961416 Score: 222
Period size: 35 Copynumber: 4.4 Consensus size: 35
66961253 AATCATATCT
66961263 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGA-T-TATATCATATCTAAGATTGCAATCATA
66961300 TCTAAGATTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTATATCATATCTAAGATTGCAATCATA
*
66961335 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTATATCATATCTAAGATTGCAATCATA
* * *
66961370 TTTAAGATTGTATCATATCTAAGATTACATATCAT-
1 TCTAAGATTATATCATATCTAAGATTGCA-ATCATA
*
66961405 T-GAAGATTATAT
1 TCTAAGATTATAT
66961417 TTCCATATGA
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
34 9 0.08
35 89 0.80
36 6 0.05
37 7 0.06
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.39
Consensus pattern (35 bp):
TCTAAGATTATATCATATCTAAGATTGCAATCATA
Found at i:66962008 original size:83 final size:83
Alignment explanation
Indices: 66961788--66962140 Score: 616
Period size: 83 Copynumber: 4.2 Consensus size: 83
66961778 TTCGATTTGT
* * *
66961788 AAGGATGTCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
*
66961853 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
66961871 AAGGATGCCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATGTCTGCAAGGTCCTCG
1 AAGGATGCC-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCG
*
66961936 ATTTGTTCCTTGTAAGAAC
65 ATTTGTTCCTTGTAAGCAC
* *
66961955 AAGGATGCCAAACCATCTTAAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
66962020 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
66962038 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
66962103 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
66962121 AAGGATGCCAAACCATCTTG
1 AAGGATGCCAAACCATCTTG
66962141 GATCTGCTTC
Statistics
Matches: 258, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
83 180 0.70
84 78 0.30
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:66962660 original size:119 final size:119
Alignment explanation
Indices: 66962064--66962657 Score: 1035
Period size: 119 Copynumber: 5.0 Consensus size: 119
66962054 CTTGAGTCTG
* * * * * *
66962064 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
66962129 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
66962183 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
66962248 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
66962302 TTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
66962367 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
66962421 TTTGAGAACGTCTGAGAATCAAATTTGCTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
66962486 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
66962540 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
66962605 CAAATCATCTTGGATCTGCTTCAGTATAAACATTTGAAGGTTAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
66962658 CTTCGATCTG
Statistics
Matches: 451, Mismatches: 24, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 451 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:66962697 original size:44 final size:44
Alignment explanation
Indices: 66962649--66962828 Score: 177
Period size: 44 Copynumber: 4.1 Consensus size: 44
66962639 TGAAGGTTAG
66962649 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
*
66962693 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * * * *
66962735 ATGCTGAAATCTTCAATCTGCTTCGCTGTAAGCACAAGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAA
* * * *
66962781 ATCTACTATATTTGATCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
66962825 ATCT
1 ATCT
66962829 TGTTTCTTTG
Statistics
Matches: 106, Mismatches: 24, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
42 2 0.02
43 13 0.12
44 78 0.74
45 11 0.10
46 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:66963733 original size:14 final size:13
Alignment explanation
Indices: 66963709--66963757 Score: 64
Period size: 14 Copynumber: 3.7 Consensus size: 13
66963699 CTCTCCATCT
66963709 TTTTCTTTTTTCTC
1 TTTT-TTTTTTCTC
66963723 TTTATTTTTTTCTC
1 TTT-TTTTTTTCTC
*
66963737 TTTTTCTTTTCT-
1 TTTTTTTTTTCTC
66963749 TTTTTTTTT
1 TTTTTTTTT
66963758 GAAATAGAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 8 0.25
13 8 0.25
14 15 0.47
15 1 0.03
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTTTTTCTC
Found at i:66963755 original size:22 final size:21
Alignment explanation
Indices: 66963708--66963754 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
66963698 CCTCTCCATC
66963708 TTTTTCTTTTTTCTCTTTATT
1 TTTTTCTTTTTTCTCTTTATT
*
66963729 TTTTTCTCTTTTTCT-TTTCTT
1 TTTTTCT-TTTTTCTCTTTATT
66963750 TTTTT
1 TTTTT
66963755 TTTGAAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTCTTTTTTCTCTTTATT
Found at i:66969543 original size:29 final size:31
Alignment explanation
Indices: 66969511--66969574 Score: 73
Period size: 31 Copynumber: 2.1 Consensus size: 31
66969501 GATATTTAAT
66969511 AATAAA-TT-TAA-AAT-ATAATATATAATAAA
1 AATAAATTTATAAGAATAATAAT-TAT-ATAAA
*
66969540 AATATATTTATAAGAATAATAATTATATAAA
1 AATAAATTTATAAGAATAATAATTATATAAA
66969571 AATA
1 AATA
66969575 TAAAATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
29 5 0.17
30 2 0.07
31 12 0.40
32 6 0.20
33 5 0.17
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (31 bp):
AATAAATTTATAAGAATAATAATTATATAAA
Found at i:66969551 original size:17 final size:17
Alignment explanation
Indices: 66969520--66969576 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
66969510 TAATAAATTT
*
66969520 AAAATATAATATATAATA
1 AAAATAT-ATTTATAATA
*
66969538 AAAATATATTTATAAGA
1 AAAATATATTTATAATA
*
66969555 ATAATA-A-TTAT-ATA
1 AAAATATATTTATAATA
66969569 AAAATATA
1 AAAATATA
66969577 AAATATATTG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
14 7 0.21
15 5 0.15
16 1 0.03
17 13 0.39
18 7 0.21
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
AAAATATATTTATAATA
Found at i:66972071 original size:52 final size:51
Alignment explanation
Indices: 66971977--66972186 Score: 286
Period size: 52 Copynumber: 4.1 Consensus size: 51
66971967 ATCAAGTGAC
*
66971977 AAAGTGATAAGTGATAGCTTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGC-TTCAGCTACACTTATCTGATCAAGAGACAAGT-G
* *
66972030 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* *
66972081 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-----
1 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
*
66972128 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-AAGTG
66972180 ATAAGTG
1 A-AAGTG
66972187 GCTACACTTA
Statistics
Matches: 143, Mismatches: 6, Indels: 16
0.87 0.04 0.10
Matches are distributed among these distances:
46 43 0.30
51 1 0.01
52 76 0.53
53 23 0.16
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
Found at i:66972133 original size:98 final size:100
Alignment explanation
Indices: 66971969--66972186 Score: 296
Period size: 98 Copynumber: 2.1 Consensus size: 100
66971959 TACTTCTGAT
*
66971969 CAAGTGACAAAGTGATAAGTGATAGCTTTCAGCTACACTTATCTGATCAAGTGACAAGTGGAAAG
1 CAAGTGA-AAAGTGATAAGTGATAGCTTTCAGCTACACTTATCTGATCAAGAGAC-----GAAAG
* *
66972034 TGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
60 TGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGA
* *
66972075 CAAGTGAAAAGTGATAAGTGATAGC-TTCGGCTATACTTATCTGATCAAGAGAC-AAAGTGATAA
1 CAAGTGAAAAGTGATAAGTGATAGCTTTCAGCTACACTTATCTGATCAAGAGACGAAAGTGATAA
*
66972138 GTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
66 GTGATAGCTTCAGCTACACTTATCTGATCAAGAGA
*
66972173 CAAAGTGATAAGTG
1 C-AAGTGAAAAGTG
66972187 GCTACACTTA
Statistics
Matches: 104, Mismatches: 7, Indels: 9
0.87 0.06 0.08
Matches are distributed among these distances:
98 43 0.41
99 11 0.11
104 25 0.24
105 18 0.17
106 7 0.07
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (100 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTTCAGCTACACTTATCTGATCAAGAGACGAAAGTGATAA
GTGATAGCTTCAGCTACACTTATCTGATCAAGAGA
Found at i:66972159 original size:46 final size:44
Alignment explanation
Indices: 66972082--66972297 Score: 199
Period size: 37 Copynumber: 5.3 Consensus size: 44
66972072 TGACAAGTGA
*
66972082 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTT--GCTACACTTATCTGATCAAGAGAC
66972128 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGC-TT-GCTACACTTATCTGATCAAGAGAC
*
66972174 AAAGTGATAA--G-T-G---GCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
*
66972211 AAAGTGATAA--G-T-G---GCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
*
66972248 AAAGTGAT-AG-G-T-G---GCTACACTTATCTGATC-AGGGAC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
66972284 -AAGTGATAAGTGAT
1 AAAGTGATAAGTGAT
66972298 CATACGTAAG
Statistics
Matches: 160, Mismatches: 5, Indels: 18
0.87 0.03 0.10
Matches are distributed among these distances:
35 7 0.04
36 7 0.04
37 89 0.56
38 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
46 51 0.32
47 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (44 bp):
AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
Found at i:66972194 original size:37 final size:37
Alignment explanation
Indices: 66972150--66972295 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
66972140 GATAGCTTTA
*
66972150 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
66972187 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
66972224 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
66972261 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
66972296 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:66973529 original size:49 final size:49
Alignment explanation
Indices: 66973468--66973660 Score: 314
Period size: 49 Copynumber: 3.9 Consensus size: 49
66973458 ATGTGAACAT
66973468 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
*
66973518 GTGATATGTGATTCCGCGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* *
66973567 GTGATATGTGATTTCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * * *
66973616 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCG
66973661 AGAAAACGAA
Statistics
Matches: 135, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
49 131 0.97
50 4 0.03
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.31
Consensus pattern (49 bp):
GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:66976869 original size:52 final size:51
Alignment explanation
Indices: 66976798--66977006 Score: 293
Period size: 52 Copynumber: 4.1 Consensus size: 51
66976788 ATCAAGTGAC
*
66976798 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGT-G
* *
66976850 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* *
66976901 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-----
1 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
*
66976948 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-AAGTG
66977000 ATAAGTG
1 A-AAGTG
66977007 GCTACACTTA
Statistics
Matches: 143, Mismatches: 6, Indels: 15
0.87 0.04 0.09
Matches are distributed among these distances:
46 43 0.30
51 1 0.01
52 94 0.66
53 5 0.03
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.27
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
Found at i:66976974 original size:98 final size:99
Alignment explanation
Indices: 66976790--66977006 Score: 301
Period size: 98 Copynumber: 2.1 Consensus size: 99
66976780 TACTTCTGAT
*
66976790 CAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGT
1 CAAGTGA-AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-----GAAAGT
* *
66976855 GATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
60 GATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGA
* *
66976895 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-AAAGTGATAAG
1 CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAGTGATAAG
*
66976959 TGATAGCTTTAGCTACACTTATCTGATCAAGAGA
66 TGATAGCTTCAGCTACACTTATCTGATCAAGAGA
*
66976993 CAAAGTGATAAGTG
1 C-AAGTGAAAAGTG
66977007 GCTACACTTA
Statistics
Matches: 104, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
98 43 0.41
99 11 0.11
104 43 0.41
105 7 0.07
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.27
Consensus pattern (99 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAGTGATAAG
TGATAGCTTCAGCTACACTTATCTGATCAAGAGA
Found at i:66976979 original size:46 final size:44
Alignment explanation
Indices: 66976902--66977117 Score: 199
Period size: 37 Copynumber: 5.3 Consensus size: 44
66976892 TGACAAGTGA
*
66976902 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTT--GCTACACTTATCTGATCAAGAGAC
66976948 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGC-TT-GCTACACTTATCTGATCAAGAGAC
*
66976994 AAAGTGATAA--G-T-G---GCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
*
66977031 AAAGTGATAA--G-T-G---GCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
*
66977068 AAAGTGAT-AG-G-T-G---GCTACACTTATCTGATC-AGGGAC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
66977104 -AAGTGATAAGTGAT
1 AAAGTGATAAGTGAT
66977118 CATACGTAAG
Statistics
Matches: 160, Mismatches: 5, Indels: 18
0.87 0.03 0.10
Matches are distributed among these distances:
35 7 0.04
36 7 0.04
37 89 0.56
38 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
46 51 0.32
47 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (44 bp):
AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
Found at i:66977014 original size:37 final size:37
Alignment explanation
Indices: 66976970--66977115 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
66976960 GATAGCTTTA
*
66976970 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
66977007 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
66977044 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
66977081 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
66977116 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:66977863 original size:18 final size:18
Alignment explanation
Indices: 66977827--66977942 Score: 155
Period size: 18 Copynumber: 6.5 Consensus size: 18
66977817 AATCATATCT
*
66977827 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
66977846 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
66977864 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
*
66977881 TCTAATATTGCAATCATA
1 TCTAAGATTGCAATCATA
66977899 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
* *
66977917 TTTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
*
66977934 TTTAAGATT
1 TCTAAGATT
66977943 ACATATCATT
Statistics
Matches: 89, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
17 30 0.34
18 48 0.54
19 11 0.12
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:66977885 original size:35 final size:36
Alignment explanation
Indices: 66977827--66977951 Score: 157
Period size: 35 Copynumber: 3.5 Consensus size: 36
66977817 AATCATATCT
66977827 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
*
66977864 TCTAAGATTG-TATCATATCTAATATTGCAATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
* *
66977899 TCTAAGATTGCA-ATCATATTTAAGATTG-TATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
* *
66977934 TTTAAGATTACATATCAT
1 TCTAAGATT-GATATCAT
66977952 TGAAGATTAT
Statistics
Matches: 78, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
35 49 0.63
36 19 0.24
37 10 0.13
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.40
Consensus pattern (36 bp):
TCTAAGATTGATATCATATCTAAGATTGCAATCATA
Found at i:66978166 original size:20 final size:20
Alignment explanation
Indices: 66978138--66978190 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
66978128 CTACAACTAC
*
66978138 TACTATTATTCTTATTAACA
1 TACTATTATTATTATTAACA
* * *
66978158 TATTATTATTATTTTTACCA
1 TACTATTATTATTATTAACA
66978178 TACTATTATTATT
1 TACTATTATTATT
66978191 CCCCTTTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (20 bp):
TACTATTATTATTATTAACA
Found at i:66978250 original size:3 final size:3
Alignment explanation
Indices: 66978237--66978418 Score: 113
Period size: 3 Copynumber: 60.7 Consensus size: 3
66978227 TATATTAATG
* * *
66978237 TAT TGT TAT TAT TAT TAT TAT TAC TAT TAC TAT TAT TAT TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** * *
66978284 T-T TAT GTAT ATAT TAG TAT T-T ATAT TAT CGT TAT TAT TAC TAT TGT
1 TAT TAT -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
66978330 TAA TAT TTT TAT TAC TAT TAT TTT TAT TCCT T-T TATT TAT TAT CAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT
** * *
66978376 TA- TAT TAT TAT TGC TAT TGT TAC TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
66978419 AAAAATTTTA
Statistics
Matches: 134, Mismatches: 37, Indels: 16
0.72 0.20 0.09
Matches are distributed among these distances:
2 9 0.07
3 113 0.84
4 12 0.09
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:66978523 original size:17 final size:17
Alignment explanation
Indices: 66978490--66978523 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
66978480 TTTTATTATC
*
66978490 ATTATTACTATCGTATT
1 ATTATTACTATCATATT
*
66978507 ATTATTACTATTATATT
1 ATTATTACTATCATATT
66978524 TTCATCTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.09, G:0.03, T:0.56
Consensus pattern (17 bp):
ATTATTACTATCATATT
Found at i:66982506 original size:26 final size:26
Alignment explanation
Indices: 66982470--66982553 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
66982460 CATGAAATTC
66982470 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
66982496 TTATCATGAAACATTTACCTAACCCG
1 TTATCATGAAACATTTACCTAACCCA
* *
66982522 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
66982548 TTATCA
1 TTATCA
66982554 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:66989157 original size:17 final size:17
Alignment explanation
Indices: 66989135--66989173 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
66989125 TTTATTTATC
*
66989135 AATTAATTAATTAATTA
1 AATTAATTAACTAATTA
**
66989152 AATTAATTTCCTAATTA
1 AATTAATTAACTAATTA
66989169 AATTA
1 AATTA
66989174 TTTTCTCAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTAATTAACTAATTA
Found at i:66989178 original size:17 final size:17
Alignment explanation
Indices: 66989146--66989178 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
66989136 ATTAATTAAT
66989146 TAATTAAATTAATTTCC
1 TAATTAAATTAATTTCC
*
66989163 TAATTAAATTATTTTC
1 TAATTAAATTAATTTC
66989179 TCAATCCAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (17 bp):
TAATTAAATTAATTTCC
Found at i:66993008 original size:29 final size:29
Alignment explanation
Indices: 66992966--66993026 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
66992956 TGTAATATTG
66992966 TTAGTCCAAGAAAGTAGTCGATAAAACAT
1 TTAGTCCAAGAAAGTAGTCGATAAAACAT
66992995 TTAGTCCAAGAAAGTAGTCGATAAAACAT
1 TTAGTCCAAGAAAGTAGTCGATAAAACAT
66993024 TTA
1 TTA
66993027 CTAATAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.26
Consensus pattern (29 bp):
TTAGTCCAAGAAAGTAGTCGATAAAACAT
Found at i:67005098 original size:22 final size:23
Alignment explanation
Indices: 67005073--67005125 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
67005063 TTTTACTCTT
* *
67005073 TTTTTTTGCTATTTTATTGTTA-
1 TTTTTTTCCTATTATATTGTTAC
*
67005095 TTTTTTTCCTATTATGTTGTTAC
1 TTTTTTTCCTATTATATTGTTAC
67005118 TATTTTTT
1 T-TTTTTT
67005126 TGAAGTAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 19 0.73
23 1 0.04
24 6 0.23
ACGTcount: A:0.13, C:0.08, G:0.08, T:0.72
Consensus pattern (23 bp):
TTTTTTTCCTATTATATTGTTAC
Found at i:67005560 original size:32 final size:30
Alignment explanation
Indices: 67005516--67005585 Score: 77
Period size: 32 Copynumber: 2.3 Consensus size: 30
67005506 TATTATAATC
*
67005516 TATAATATAATAATAATATTAATAATTATA
1 TATAATATAATAATAATAGTAATAATTATA
** *
67005546 TATACATATTAATAATTTTAGTAATAGTTATA
1 TATA-ATA-TAATAATAATAGTAATAATTATA
*
67005578 TATTATAT
1 TATAATAT
67005586 TATTATATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
30 5 0.15
31 6 0.18
32 22 0.67
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (30 bp):
TATAATATAATAATAATAGTAATAATTATA
Found at i:67010200 original size:24 final size:21
Alignment explanation
Indices: 67010172--67010260 Score: 99
Period size: 21 Copynumber: 4.1 Consensus size: 21
67010162 ACAAAAAAGA
*
67010172 TTTGTCTAAGTCACTTCGTTTCTT
1 TTTGTCCAAGTCACTTC---TCTT
*
67010196 TTTGTCCAAGTTACTTCTCTT
1 TTTGTCCAAGTCACTTCTCTT
**
67010217 TTTGTCCAAGTTGCTTCTCTT
1 TTTGTCCAAGTCACTTCTCTT
*
67010238 TTTGTCCAACTCACTTC-CTT
1 TTTGTCCAAGTCACTTCTCTT
67010258 TTT
1 TTT
67010261 TCTTTGTGAG
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
20 6 0.10
21 38 0.64
24 15 0.25
ACGTcount: A:0.12, C:0.25, G:0.10, T:0.53
Consensus pattern (21 bp):
TTTGTCCAAGTCACTTCTCTT
Found at i:67010261 original size:21 final size:21
Alignment explanation
Indices: 67010192--67010260 Score: 104
Period size: 21 Copynumber: 3.3 Consensus size: 21
67010182 TCACTTCGTT
67010192 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
67010213 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* *
67010234 TCTTTTTGTCCAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
67010255 -CTTTTT
1 TCTTTTT
67010261 TCTTTGTGAG
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
20 6 0.14
21 38 0.86
ACGTcount: A:0.12, C:0.26, G:0.09, T:0.54
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:67015930 original size:29 final size:29
Alignment explanation
Indices: 67015894--67015982 Score: 90
Period size: 31 Copynumber: 3.0 Consensus size: 29
67015884 AATTTATCAT
* *
67015894 GTGTAATTTTATTTATGAATTTTAATTTA
1 GTGTAATTATATATATGAATTTTAATTTA
*
67015923 GTGTAATTATATATATGAAATTTTGATTATA
1 GTGTAATTATATATATG-AATTTTAATT-TA
* *
67015954 GTTTAAATATATGCATA-GAATTTTAATTT
1 GTGTAATTATAT--ATATGAATTTTAATTT
67015983 TGATTCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 15 0.30
30 10 0.20
31 21 0.42
32 1 0.02
33 3 0.06
ACGTcount: A:0.36, C:0.01, G:0.11, T:0.52
Consensus pattern (29 bp):
GTGTAATTATATATATGAATTTTAATTTA
Found at i:67020293 original size:15 final size:14
Alignment explanation
Indices: 67020262--67020299 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
67020252 GTTTACCAGT
*
67020262 AAAATATTTTCTGA
1 AAAATAATTTCTGA
67020276 AAAATAATTTCTGA
1 AAAATAATTTCTGA
*
67020290 AAAATGATTT
1 AAAATAATTT
67020300 AATTTTCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.39
Consensus pattern (14 bp):
AAAATAATTTCTGA
Found at i:67020304 original size:19 final size:19
Alignment explanation
Indices: 67020283--67020326 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
67020273 TGAAAAATAA
67020283 TTTCTGAAAAATGATTTAAT
1 TTTCT-AAAAATGATTTAAT
* *
67020303 TTTCTAGAAATGATTTACT
1 TTTCTAAAAATGATTTAAT
67020322 TTTCT
1 TTTCT
67020327 GATGTTTGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (19 bp):
TTTCTAAAAATGATTTAAT
Found at i:67020431 original size:16 final size:18
Alignment explanation
Indices: 67020403--67020439 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
67020393 GAAAAGCTGT
67020403 TTTAAGAAATTTA-TATA
1 TTTAAGAAATTTATTATA
67020420 TTTAAG-AATTTATTATA
1 TTTAAGAAATTTATTATA
67020437 TTT
1 TTT
67020440 TCATTGTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (18 bp):
TTTAAGAAATTTATTATA
Found at i:67023760 original size:61 final size:57
Alignment explanation
Indices: 67023660--67023781 Score: 190
Period size: 61 Copynumber: 2.1 Consensus size: 57
67023650 AGAAATATTT
67023660 AAAAAGTTGAAGAACGGAAGAGAAGAAAAAGACTTACCTGGATGAAGAAGGAGATGG
1 AAAAAGTTGAAGAACGGAAGAGAAGAAAAAGACTTACCTGGATGAAGAAGGAGATGG
* *
67023717 AAAAAGTTGAAGAACGGAATAAGAAGAAGAAGAAGACTTACCTGGATGAAGAAGGTGATGG
1 AAAAAGTTGAAGAACGG---AAG-AGAAGAAAAAGACTTACCTGGATGAAGAAGGAGATGG
67023778 AAAA
1 AAAA
67023782 TGTCTTACGG
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
57 17 0.29
60 3 0.05
61 39 0.66
ACGTcount: A:0.50, C:0.07, G:0.30, T:0.13
Consensus pattern (57 bp):
AAAAAGTTGAAGAACGGAAGAGAAGAAAAAGACTTACCTGGATGAAGAAGGAGATGG
Found at i:67027001 original size:20 final size:21
Alignment explanation
Indices: 67026964--67027007 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
67026954 AAACATAATA
67026964 ATAGTATTAAAAAGTATATAC
1 ATAGTATTAAAAAGTATATAC
67026985 ATAGTATTAAAAA-TATATAC
1 ATAGTATTAAAAAGTATATAC
67027005 ATA
1 ATA
67027008 ATATATACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (21 bp):
ATAGTATTAAAAAGTATATAC
Found at i:67027010 original size:11 final size:11
Alignment explanation
Indices: 67026978--67027018 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
67026968 TATTAAAAAG
*
67026978 TATATACATAG
1 TATATACATAA
*
67026989 TAT-TA-AAAA
1 TATATACATAA
67026998 TATATACATAA
1 TATATACATAA
67027009 TATATACATA
1 TATATACATA
67027019 TTAGAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 5 0.20
10 4 0.16
11 16 0.64
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (11 bp):
TATATACATAA
Found at i:67027018 original size:58 final size:55
Alignment explanation
Indices: 67026949--67027136 Score: 145
Period size: 58 Copynumber: 3.4 Consensus size: 55
67026939 TATATGTTAA
* *
67026949 AATATAAACATAATAATAGTATTAAAAAGTATATACATAGTATTAAAAATATATACAT
1 AATATATACATAATAATA-TATTAAAAA-TATATACATAATATTAAAAATA-ATACAT
* * * * * * * * *
67027007 AATATATACATATTAGA-AAAATAATAATATTAAAAACAACTATTAATAATACTACAT
1 AATATATACATAATA-ATATATTAAAAATA-TATACATAA-TATTAAAAATAATACAT
*
67027064 GA-ATATACAT-AT-ATATATTAAAAATATATA-ATAATATTAAAAATACATACAT
1 AATATATACATAATAATATATTAAAAATATATACATAATATTAAAAATA-ATACAT
67027116 AATATATATACAT-ATAATATA
1 -A-ATATATACATAATAATATA
67027137 GTTATTAAAA
Statistics
Matches: 100, Mismatches: 21, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
51 10 0.10
52 8 0.08
53 4 0.04
54 10 0.10
55 11 0.11
56 15 0.15
57 17 0.17
58 24 0.24
59 1 0.01
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (55 bp):
AATATATACATAATAATATATTAAAAATATATACATAATATTAAAAATAATACAT
Found at i:67027099 original size:45 final size:45
Alignment explanation
Indices: 67026989--67027099 Score: 104
Period size: 45 Copynumber: 2.5 Consensus size: 45
67026979 ATATACATAG
*
67026989 TATTAAAAATATATACATAAT-ATATACATATTAGAAAAATAATAA
1 TATTAAAAATATATA-ATAATAATATACATAATAGAAAAATAATAA
* * * * *
67027034 TATTAAAAACA-ACTATTAATAATACTACATGAATATACATAT-AT-A
1 TATTAAAAATATA-TAATAATAATA-TACAT-AATAGAAAAATAATAA
67027079 TATTAAAAATATATAATAATA
1 TATTAAAAATATATAATAATA
67027100 TTAAAAATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
44 5 0.09
45 33 0.62
46 8 0.15
47 7 0.13
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (45 bp):
TATTAAAAATATATAATAATAATATACATAATAGAAAAATAATAA
Found at i:67027100 original size:23 final size:22
Alignment explanation
Indices: 67027065--67027190 Score: 74
Period size: 19 Copynumber: 5.8 Consensus size: 22
67027055 ATACTACATG
67027065 AATATACAT-ATATATATTAAA
1 AATATACATAATATATATTAAA
67027086 AATAT--ATAATA-ATATTAAA
1 AATATACATAATATATATTAAA
67027105 AATACATACATAATATATA-T--A
1 AAT--ATACATAATATATATTAAA
*
67027126 CATATA-AT-ATAGT-TATTAAA
1 AATATACATAATA-TATATTAAA
* *
67027146 AAAATACATACAATATATAGTATTAAG
1 AATATACAT---A-ATATA-TATTAAA
*
67027173 AATATACACAATATATAT
1 AATATACATAATATATAT
67027191 GGTATTAAAA
Statistics
Matches: 81, Mismatches: 6, Indels: 35
0.66 0.05 0.29
Matches are distributed among these distances:
17 5 0.06
18 4 0.05
19 16 0.20
20 8 0.10
21 12 0.15
22 3 0.04
23 12 0.15
24 4 0.05
25 1 0.01
26 3 0.04
27 13 0.16
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.35
Consensus pattern (22 bp):
AATATACATAATATATATTAAA
Found at i:67027136 original size:43 final size:38
Alignment explanation
Indices: 67027068--67027164 Score: 90
Period size: 39 Copynumber: 2.4 Consensus size: 38
67027058 CTACATGAAT
67027068 ATACAT-ATATATATTAAAAATATATAATAATATTAAAAATA
1 ATACATAATATATA-TAAAAATATATAAT--TATTAAAAA-A
* * *
67027109 CATACATAATATATATACATATAATATAGTTATTAAAAAA
1 -ATACATAATATATATAAAAAT-ATATAATTATTAAAAAA
67027149 ATACATACA-ATATATA
1 ATACATA-ATATATATA
67027165 GTATTAAGAA
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
39 14 0.29
40 2 0.04
41 9 0.18
42 11 0.22
43 13 0.27
ACGTcount: A:0.58, C:0.06, G:0.01, T:0.35
Consensus pattern (38 bp):
ATACATAATATATATAAAAATATATAATTATTAAAAAA
Found at i:67027179 original size:27 final size:27
Alignment explanation
Indices: 67027116--67027205 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 27
67027106 ATACATACAT
*
67027116 AATATATATACATATAATATAGTTATTAAA
1 AATATACATACA-AT-ATATAG-TATTAAA
* *
67027146 AAAATACATACAATATATAGTATTAAG
1 AATATACATACAATATATAGTATTAAA
67027173 AATATAC--ACAATATATATGGTATTAAA
1 AATATACATACAATATATA--GTATTAAA
67027200 AATATA
1 AATATA
67027206 GTATTAAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
25 10 0.19
27 25 0.47
28 6 0.11
29 2 0.04
30 10 0.19
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (27 bp):
AATATACATACAATATATAGTATTAAA
Found at i:67027405 original size:21 final size:22
Alignment explanation
Indices: 67027379--67027419 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
67027369 ATATATACGT
*
67027379 AAACATATATATATA-TATTGA
1 AAACATATATACATAGTATTGA
67027400 AAACATATATACATAGTATT
1 AAACATATATACATAGTATT
67027420 AGTATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (22 bp):
AAACATATATACATAGTATTGA
Found at i:67027447 original size:28 final size:28
Alignment explanation
Indices: 67027381--67027447 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 28
67027371 ATATACGTAA
67027381 ACATATATATATA-TATTGAAAACATATAT
1 ACATA-ATAT-TAGTATTGAAAACATATAT
* *
67027410 ACATAGTATTAGTATTTAAATACATATA-
1 ACATAATATTAGTATTGAAA-ACATATAT
*
67027438 ATATAATATT
1 ACATAATATT
67027448 TAAGAAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
27 2 0.06
28 18 0.56
29 12 0.38
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.40
Consensus pattern (28 bp):
ACATAATATTAGTATTGAAAACATATAT
Found at i:67029308 original size:21 final size:21
Alignment explanation
Indices: 67029282--67029332 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
67029272 AAGATAAGAT
**
67029282 CTGCAACTTCAATGTGCTCCA
1 CTGCAACTTCAATCAGCTCCA
* *
67029303 CTGCAACCTCGATCAGCTCCA
1 CTGCAACTTCAATCAGCTCCA
67029324 CTGCAACTT
1 CTGCAACTT
67029333 TAAGGAGGCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.24, C:0.37, G:0.14, T:0.25
Consensus pattern (21 bp):
CTGCAACTTCAATCAGCTCCA
Found at i:67029596 original size:87 final size:86
Alignment explanation
Indices: 67029400--67029697 Score: 278
Period size: 88 Copynumber: 3.4 Consensus size: 86
67029390 GTGATCCTGA
* * * * * *
67029400 GCTCAACTCACTTCTCGCAATATAAGTTGACTCTTTAAAAATAGATATT-AAAAACAGAAATTGA
1 GCTCAACTCACATCTCGCAATATGAGTTGACTTTTTGAAAACAGAAATTGAAAAACAGAAATTGA
* * * *
67029464 AAATAGCTCAGCATGTGAGCCAAG
66 AATTACCTCAGC--GTG-TCCGAG
* * * * *
67029488 GCTCAACTCACCTCTCTCAATATGAGTTGA-TTTTTGACAAACGGAAATTGAAAAATAGAACTTG
1 GCTCAACTCACATCTCGCAATATGAGTTGACTTTTTGA-AAACAGAAATTGAAAAACAGAAATTG
67029552 AAATTACCTCAGCGTGTCCTGAG
65 AAATTACCTCAGCGTGTCC-GAG
* * * * * *
67029575 GCTCAACTCACATCTCGCAATATGAGCTGATTTTTTG-GAACATAAATTGAATAACAGAAATTAA
1 GCTCAACTCACATCTCGCAATATGAGTTGACTTTTTGAAAACAGAAATTGAAAAACAGAAATTGA
67029639 AATTACCTCAGCGTGTGAGCCGAG
66 AATTACCTCAGCGTGT---CCGAG
* * * *
67029663 GTTCAACTCACATCTTGTAATACGAGTTGACTTTT
1 GCTCAACTCACATCTCGCAATATGAGTTGACTTTT
67029698 AAAAAAAAAC
Statistics
Matches: 173, Mismatches: 30, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
86 38 0.22
87 37 0.21
88 73 0.42
89 25 0.14
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (86 bp):
GCTCAACTCACATCTCGCAATATGAGTTGACTTTTTGAAAACAGAAATTGAAAAACAGAAATTGA
AATTACCTCAGCGTGTCCGAG
Found at i:67029692 original size:175 final size:164
Alignment explanation
Indices: 67029394--67029938 Score: 406
Period size: 175 Copynumber: 3.3 Consensus size: 164
67029384 CGGCATGTGA
* * * *
67029394 TCCTGA-GCTCAACTCACTTCTCGCAATATAAGTTGACTCTTTAAAAATAGATATTAAAAACAGA
1 TCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTAAAAATAGATATTAAAAACAGA
* * * *
67029458 AATTGAAAATAGCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTCTCAATATGAGTTGATTTTT
66 AATTGAAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACATCTCTCAATACGAGTTGACTTTT
*
67029523 GACAAACGGAAATTGAAAAATAGAACTTGAAATTACCTCAGCGTG
131 ---AAA---AAA---AAAAA-AGAA-TTGAAAATACCTCAGCGTG
* * * *
67029568 TCCTGAGGCTCAACTCACATCTCGCAATATGAGCTGATTTTTTGGAACATA-A-ATTGAATAACA
1 TCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTT-AAAAATAGATATT-AAAAACA
* * * *
67029631 GAAATT-AAAATTACCTCAGCGTGTGAGCCGAGGTTCAACTCACATCT-TGTAATACGAGTTGAC
64 GAAATTGAAAA-TACCTCAGCATGTGAGCCAAGGCTCAACTCACATCTCT-CAATACGAGTTGAC
* *
67029694 TTTTAAAAAAAAACAGGAATTGAAAATACCTCAGCGTG
127 TTTTAAAAAAAAAAAAGAATTGAAAATACCTCAGCGTG
* *
67029732 TGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-----T-G-----AAAAATA
1 T--CCTGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTAAAAATAGATATTAAAAACA
* * * * * ** * * * *
67029786 GGAACTAAAAATACCTCGGCTTGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
64 GAAATTGAAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACATCTCTCAATACGAGTTGACTT
*** * * * * *
67029850 TT-TTGAAAAATAGGAACTAAAAATACCTCGGCTTGTG
129 TTAAAAAAAAAAAAGAATTGAAAATACCTCAGC--GTG
* *
67029887 TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAG
1 TCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTT-AAAAATAG
67029939 GAACTAAAAA
Statistics
Matches: 310, Mismatches: 42, Indels: 52
0.77 0.10 0.13
Matches are distributed among these distances:
153 64 0.21
154 4 0.01
155 54 0.17
156 4 0.01
159 1 0.00
160 2 0.01
164 19 0.06
165 3 0.01
166 44 0.14
169 3 0.01
172 3 0.01
174 14 0.05
175 90 0.29
176 5 0.02
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (164 bp):
TCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTAAAAATAGATATTAAAAACAGA
AATTGAAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACATCTCTCAATACGAGTTGACTTTT
AAAAAAAAAAAAGAATTGAAAATACCTCAGCGTG
Found at i:67029886 original size:76 final size:76
Alignment explanation
Indices: 67029636--67030005 Score: 533
Period size: 76 Copynumber: 4.8 Consensus size: 76
67029626 TAACAGAAAT
* * * * * * * **
67029636 TAAAATTACCTCAGCGTGTGAGCCGAGGTTCAACTCACATCTTGTAATACGAGTTGACTTTTAAA
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT-TT
* * *
67029701 AAAAAACAGGAAT
64 GAAAAATAGGAAC
* *
67029714 TGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG
67029779 AAAAATAGGAAC
65 AAAAATAGGAAC
* * *
67029791 TAAAAATACCTCGGCTTGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
67029856 AAAATAGGAAC
66 AAAATAGGAAC
* * *
67029867 TAAAAATACCTCGGCTTGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
67029932 AAAATAGGAAC
66 AAAATAGGAAC
67029943 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
67030006 TTGGACAACA
Statistics
Matches: 269, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
76 155 0.58
77 62 0.23
78 52 0.19
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (76 bp):
TAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
AAAATAGGAAC
Found at i:67030086 original size:91 final size:89
Alignment explanation
Indices: 67029931--67030117 Score: 275
Period size: 91 Copynumber: 2.1 Consensus size: 89
67029921 TGATTTTTTG
* *
67029931 AAAAATAGGAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAATAGAAACTAAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
* *
67029996 TTGATTTTTTTTGGACAACAGAAATT
66 TTGA-TTTTTTTGAACAACA-AAAAT
* * * * *
67030022 AAAAATAGAAATTGAAAATATCTCGGCATGTGGCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAATAGAAACTAAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
67030087 TTGATTTTTTTGAACAACAAAAAT
66 TTGATTTTTTTGAACAACAAAAAT
67030111 AAAAATA
1 AAAAATA
67030118 TCTGGATACC
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
89 11 0.13
90 14 0.16
91 62 0.71
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (89 bp):
AAAAATAGAAACTAAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAACAACAAAAAT
Found at i:67038362 original size:12 final size:13
Alignment explanation
Indices: 67038340--67038378 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 13
67038330 TGATATGTAC
67038340 ATGCAATGAATGA
1 ATGCAATGAATGA
67038353 ATGC-ATGAATGA
1 ATGCAATGAATGA
67038365 ATGTCAAATGAATG
1 ATG-C-AATGAATG
67038379 TTAGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 11 0.48
13 5 0.22
15 7 0.30
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.26
Consensus pattern (13 bp):
ATGCAATGAATGA
Found at i:67042390 original size:20 final size:21
Alignment explanation
Indices: 67042353--67042396 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
67042343 AAACATAATA
67042353 ATAGTATTAAAAAGTATATAC
1 ATAGTATTAAAAAGTATATAC
67042374 ATAGTATTAAAAA-TATATAC
1 ATAGTATTAAAAAGTATATAC
67042394 ATA
1 ATA
67042397 ATATATACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (21 bp):
ATAGTATTAAAAAGTATATAC
Found at i:67042571 original size:27 final size:27
Alignment explanation
Indices: 67042508--67042597 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 27
67042498 ATACGTACAT
*
67042508 AATATATATACATATAATATAGTTATTAAA
1 AATATACATACA-AT-ATATAG-TATTAAA
* *
67042538 AAAATACATACAATATATAGTATTAAG
1 AATATACATACAATATATAGTATTAAA
67042565 AATATAC--ACAATATATATGGTATTAAA
1 AATATACATACAATATATA--GTATTAAA
67042592 AATATA
1 AATATA
67042598 GTATTAAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
25 10 0.19
27 25 0.47
28 6 0.11
29 2 0.04
30 10 0.19
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (27 bp):
AATATACATACAATATATAGTATTAAA
Found at i:67043158 original size:19 final size:19
Alignment explanation
Indices: 67043136--67043206 Score: 62
Period size: 19 Copynumber: 3.8 Consensus size: 19
67043126 ATACTAATGC
67043136 TAATAAATAAT-AAATATAA
1 TAAT-AATAATAAAATATAA
*
67043155 TAATAGTAATAAAATATAA
1 TAATAATAATAAAATATAA
*
67043174 TAGT-ATACATAAAAT-TAA
1 TAATAATA-ATAAAATATAA
67043192 -AATTAA-AATAAAATA
1 TAA-TAATAATAAAATA
67043207 ATGAGAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
17 8 0.19
18 12 0.28
19 23 0.53
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (19 bp):
TAATAATAATAAAATATAA
Found at i:67045704 original size:169 final size:170
Alignment explanation
Indices: 67045420--67045824 Score: 510
Period size: 186 Copynumber: 2.3 Consensus size: 170
67045410 CTTAACCGGC
* * * * *
67045420 TAGCATCATTATTATTTATATTGTAATTTATTTTATAATAATATTCATATGGTGGATTTAGTTGT
1 TAGCATCATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGGTGGATTTAATTGT
*
67045485 CACATTATTTTATATTAATGGTAGGAAAGTAGGGACATTGAAAATAAAT-C-G-TACAAAAATTT
66 CACATTATTTTATACTAATGGTAGGAAAGTAGGGACATTGAAAATAAATCCTGTTACAAAAATTT
*
67045547 AATTTCAAATTAGATTAATGCAATATGAGGAGACTTAATT
131 AATTTCAAATTACATTAATGCAATATGAGGAGACTTAATT
* * *
67045587 TAGTATGATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGGTGGTTTTATAATT
1 TAGCATCATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGGTGG-ATT-TAATT
*
67045652 GTTACATTATTTTATACTAATGGTAGGAAAGTAGGGACATTGAAAATAAATCGCAATGTGTTGTT
64 GTCACATTATTTTATACTAATGGTAGGAAAGTAGGGACATTGAAAATAAATC-C-------TG--
* * *
67045717 TTTTTTATAATAATTTAATTTCAAATTACATTATTGCAATATGAGGAGACTTAATT
119 ----TTACAAAAATTTAATTTCAAATTACATTAATGCAATATGAGGAGACTTAATT
*
67045773 TAGCATCATTATTATTTATATTGTGATTTGTTTTATCGTAATATACATATGG
1 TAGCATCATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGG
67045825 ATTTATAATT
Statistics
Matches: 202, Mismatches: 17, Indels: 19
0.85 0.07 0.08
Matches are distributed among these distances:
167 49 0.24
168 2 0.01
169 53 0.26
171 1 0.00
179 1 0.00
186 96 0.48
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (170 bp):
TAGCATCATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGGTGGATTTAATTGT
CACATTATTTTATACTAATGGTAGGAAAGTAGGGACATTGAAAATAAATCCTGTTACAAAAATTT
AATTTCAAATTACATTAATGCAATATGAGGAGACTTAATT
Found at i:67047450 original size:30 final size:31
Alignment explanation
Indices: 67047414--67047473 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 31
67047404 AAATTTTATT
67047414 AAATTATTTCATATAATAT-TTTTTTTAACA
1 AAATTATTTCATATAATATATTTTTTTAACA
67047444 AAATTATTTCATATAATATATTTTTTTAAC
1 AAATTATTTCATATAATATATTTTTTTAAC
67047474 TTTTTAGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 19 0.66
31 10 0.34
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (31 bp):
AAATTATTTCATATAATATATTTTTTTAACA
Found at i:67048280 original size:19 final size:20
Alignment explanation
Indices: 67048245--67048290 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
67048235 CGGAAAATGA
67048245 TTTCTGGAAAATAATTTACT
1 TTTCTGGAAAATAATTTACT
*
67048265 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATAATTTACT
67048284 TTTCTGG
1 TTTCTGG
67048291 TGTTTGGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.11, G:0.15, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATAATTTACT
Found at i:67048394 original size:18 final size:18
Alignment explanation
Indices: 67048371--67048408 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
67048361 CTGTTTTTAC
67048371 ATATATTAATAAAATTAT
1 ATATATTAATAAAATTAT
67048389 ATATATTAATAAAATTAT
1 ATATATTAATAAAATTAT
67048407 AT
1 AT
67048409 TTTAAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATATTAATAAAATTAT
Found at i:67048413 original size:16 final size:16
Alignment explanation
Indices: 67048371--67048413 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 16
67048361 CTGTTTTTAC
*
67048371 ATATATTAATAAAATT
1 ATATTTTAATAAAATT
67048387 ATATATATTAATAAAATT
1 ATAT-T-TTAATAAAATT
67048405 ATATTTTAA
1 ATATTTTAA
67048414 ATTATTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 8 0.33
17 1 0.04
18 15 0.62
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATATTTTAATAAAATT
Found at i:67054195 original size:26 final size:27
Alignment explanation
Indices: 67054166--67054251 Score: 104
Period size: 28 Copynumber: 3.1 Consensus size: 27
67054156 AAAAAAATTG
67054166 TTTTATTATTATTATTCATTTTAAA-T
1 TTTTATTATTATTATTCATTTTAAACT
*
67054192 TTTT-TTATATATTATTCATGTTAAAACT
1 TTTTATTAT-TATTATTCAT-TTTAAACT
* *
67054220 TTTTATATATTATTATTTATTTTAAAGT
1 TTTTAT-TATTATTATTCATTTTAAACT
67054248 TTTT
1 TTTT
67054252 TTTCCACATA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
25 4 0.08
26 14 0.27
27 5 0.10
28 15 0.29
29 10 0.20
30 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.64
Consensus pattern (27 bp):
TTTTATTATTATTATTCATTTTAAACT
Found at i:67054425 original size:23 final size:24
Alignment explanation
Indices: 67054399--67054444 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
67054389 CTATTCACTC
67054399 TAAACTTAC-TTTATATATTATTT
1 TAAACTTACTTTTATATATTATTT
* *
67054422 TAAACTTGCTTTTATGTATTATT
1 TAAACTTACTTTTATATATTATT
67054445 GTTTTATTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.30, C:0.09, G:0.04, T:0.57
Consensus pattern (24 bp):
TAAACTTACTTTTATATATTATTT
Found at i:67054657 original size:27 final size:27
Alignment explanation
Indices: 67054608--67054662 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
67054598 ATTTATTATC
*
67054608 ATTTTAAATTTGTTTTTACATTTTGTTT
1 ATTTTAAATTTGTTTATACATTTT-TTT
67054636 ATTTT-AATTTGCTTTATA-ATTTTTTT
1 ATTTTAAATTTG-TTTATACATTTTTTT
67054662 A
1 A
67054663 ATTGTTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 4 0.16
27 11 0.44
28 10 0.40
ACGTcount: A:0.24, C:0.04, G:0.05, T:0.67
Consensus pattern (27 bp):
ATTTTAAATTTGTTTATACATTTTTTT
Found at i:67058283 original size:20 final size:21
Alignment explanation
Indices: 67058193--67058284 Score: 57
Period size: 20 Copynumber: 4.3 Consensus size: 21
67058183 TCTTTTTATT
*
67058193 TTTATTTTA-TAGAATTT-AA
1 TTTATTTTATTATAATTTAAA
*
67058212 TTTAATTTT-TTAAAATTTAAAA
1 TTT-ATTTTATTATAATTT-AAA
* * *
67058234 TTTAAGTTTAATTATTAATTTTAT
1 TTT-A-TTTTATTA-TAATTTAAA
67058258 TATTATTTTATTA-AATTTAAA
1 T-TTATTTTATTATAATTTAAA
67058279 TTTATT
1 TTTATT
67058285 ATATATTTAA
Statistics
Matches: 57, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
19 3 0.05
20 17 0.30
21 7 0.12
22 7 0.12
23 10 0.18
24 6 0.11
25 7 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TTTATTTTATTATAATTTAAA
Found at i:67058294 original size:17 final size:15
Alignment explanation
Indices: 67058264--67058297 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
67058254 TTATTATTAT
67058264 TTTATTAAATTTAAA
1 TTTATTAAATTTAAA
67058279 TTTATTATATATTTAAA
1 TTTATTA-A-ATTTAAA
67058296 TT
1 TT
67058298 ATATGATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 1 0.06
17 9 0.53
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTATTAAATTTAAA
Found at i:67061324 original size:24 final size:24
Alignment explanation
Indices: 67061292--67061339 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
67061282 AAACTTAAAC
67061292 CAGCAGTGATCTGTGACTCAAAGT
1 CAGCAGTGATCTGTGACTCAAAGT
*
67061316 CAGCAGTGATTTGTGACTCAAAGT
1 CAGCAGTGATCTGTGACTCAAAGT
67061340 TTTTGTTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (24 bp):
CAGCAGTGATCTGTGACTCAAAGT
Found at i:67062417 original size:101 final size:102
Alignment explanation
Indices: 67062239--67062425 Score: 252
Period size: 101 Copynumber: 1.8 Consensus size: 102
67062229 AGACATGAGT
* * * *
67062239 TGCTAATGAGATTCTGTTTTTTAACTTACTGTTTCCATGTTGGGGCTTCGTAACCATCTATCTGT
1 TGCTAATGAGATTCTCTCTTTTAACTCACTGTATCCATGTTGGGGCTTCGTAACCATCTATCTGT
* *
67062304 GGTAACACACACTGCCTTTGTGGTAAAACACGCAAGC
66 GGTAAAACACACTGCATTTGTGGTAAAACACGCAAGC
* * *
67062341 TGCTAATGAGATTC-CTCTTTTAACTCACTGATAT-CATGTTGGGGCTTGGTAACCATCTTTTTG
1 TGCTAATGAGATTCTCTCTTTTAACTCACTG-TATCCATGTTGGGGCTTCGTAACCATCTATCTG
* *
67062404 TTGTAAAATACACTGCATTTGT
65 TGGTAAAACACACTGCATTTGT
67062426 TCAGGTTTTC
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
101 57 0.78
102 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (102 bp):
TGCTAATGAGATTCTCTCTTTTAACTCACTGTATCCATGTTGGGGCTTCGTAACCATCTATCTGT
GGTAAAACACACTGCATTTGTGGTAAAACACGCAAGC
Found at i:67068795 original size:15 final size:15
Alignment explanation
Indices: 67068765--67068808 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
67068755 ATCCACTGCC
**
67068765 TCATCATCATAGTCG
1 TCATCATCATCCTCG
67068780 TCATCATCATCCTCG
1 TCATCATCATCCTCG
* *
67068795 TCCTCATCGTCCTC
1 TCATCATCATCCTC
67068809 ATCTTCATCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.18, C:0.39, G:0.09, T:0.34
Consensus pattern (15 bp):
TCATCATCATCCTCG
Found at i:67075641 original size:21 final size:20
Alignment explanation
Indices: 67075608--67075650 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
67075598 TAAAAAATAA
*
67075608 TAATTTTACTATTTTTAATT
1 TAATTTTAATATTTTTAATT
*
67075628 TAATATTTAATATTTTTTATT
1 TAAT-TTTAATATTTTTAATT
67075649 TA
1 TA
67075651 TTAAAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
TAATTTTAATATTTTTAATT
Found at i:67081790 original size:13 final size:13
Alignment explanation
Indices: 67081774--67081799 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67081764 TTGAGATAAT
67081774 GCTGTGTAGTGTA
1 GCTGTGTAGTGTA
67081787 GCTGTGTAGTGTA
1 GCTGTGTAGTGTA
67081800 AGTTCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.38, T:0.38
Consensus pattern (13 bp):
GCTGTGTAGTGTA
Found at i:67086328 original size:21 final size:20
Alignment explanation
Indices: 67086304--67086342 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67086294 TATTATAAAA
67086304 TTTATTTATTTTTAATAAAGT
1 TTTA-TTATTTTTAATAAAGT
*
67086325 TTTATTCTTTTTAATAAA
1 TTTATTATTTTTAATAAA
67086343 AAAAAACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTATTATTTTTAATAAAGT
Found at i:67093008 original size:66 final size:66
Alignment explanation
Indices: 67092932--67093307 Score: 207
Period size: 66 Copynumber: 5.7 Consensus size: 66
67092922 AGCTGTCACG
* * * *
67092932 TCCTTCGCTTCCTTCGCTTTTTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCATTGTAGT
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCACTGTAGT
67092997 A
66 A
* ** * * * ** * * * * *
67092998 TCTTTTGCTTCCTTAGCTTTCTGTGCTGCGTAGTCTGTAAACTCGGAAGCCTTCTGCGCTGTCGT
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCACTGTAGT
67093063 A
66 A
* * * * * * **
67093064 TCCTTTGCTCCCTTGGCTTTCTCAGCTGCATAGTCCTTATATTCAGTCGC-TTTTCCAATTGCGG
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCC-ACTGTAG
*
67093128 CA
65 TA
* ** * * * * ** ***
67093130 TCCTTTGCATCCTTAGCTTTCTGTGCTGCATAATCTGTGTACTCAGAAGCTTTTTGGGCTGTAGT
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCACTGTAGT
67093195 A
66 A
* * * * * * * * * ** *
67093196 T-CTCTTGCCTCCTTGGCTTTCTGAGCTGTATAATCCTTATATTCAGCCGCTTTCCCCATTGTAG
1 TCCT-TTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCACTGTAG
*
67093260 CA
65 TA
* * ** * *
67093262 TCCTTTGCATCCTTAGTTTTCTGTGCTGCATAGCCTGTATACTCGG
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGG
67093308 AAGCCTTCTG
Statistics
Matches: 222, Mismatches: 84, Indels: 8
0.71 0.27 0.03
Matches are distributed among these distances:
65 6 0.03
66 210 0.95
67 6 0.03
ACGTcount: A:0.14, C:0.27, G:0.18, T:0.41
Consensus pattern (66 bp):
TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCACTGTAGT
A
Found at i:67093083 original size:132 final size:132
Alignment explanation
Indices: 67092932--67093317 Score: 463
Period size: 132 Copynumber: 2.9 Consensus size: 132
67092922 AGCTGTCACG
* * * * * * * *
67092932 TCCTTCGCTTCCTTCGCTTTTTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCATTGTAGT
1 TCCTTTGCTCCCTTGGCTTTCTCAGCTGCATAGTCCTTATATTCAGTCGCTTTTTCCATTGTAGC
* * * * *
67092997 ATCTTTTGCTTCCTTAGCTTTCTGTGCTGCGTAGTCTGTAAACTCGGAAGCCTTCTGCGCTGTCG
66 ATCCTTTGCATCCTTAGCTTTCTGTGCTGCATAGTCTGTATACTCGGAAGCCTTCTGCGCTGTAG
67093062 TA
131 TA
**
67093064 TCCTTTGCTCCCTTGGCTTTCTCAGCTGCATAGTCCTTATATTCAGTCGC-TTTTCCAATTGCGG
1 TCCTTTGCTCCCTTGGCTTTCTCAGCTGCATAGTCCTTATATTCAGTCGCTTTTTCC-ATTGTAG
* * * * * *
67093128 CATCCTTTGCATCCTTAGCTTTCTGTGCTGCATAATCTGTGTACTCAGAAGCTTTTTGGGCTGTA
65 CATCCTTTGCATCCTTAGCTTTCTGTGCTGCATAGTCTGTATACTCGGAAGCCTTCTGCGCTGTA
67093193 GTA
130 GTA
* * * * **
67093196 T-CTCTTGC-CTCCTTGGCTTTCTGAGCTGTATAATCCTTATATTCAGCCGCTTTCCCCATTGTA
1 TCCT-TTGCTC-CCTTGGCTTTCTCAGCTGCATAGTCCTTATATTCAGTCGCTTTTTCCATTGTA
* *
67093259 GCATCCTTTGCATCCTTAGTTTTCTGTGCTGCATAGCCTGTATACTCGGAAGCCTTCTG
64 GCATCCTTTGCATCCTTAGCTTTCTGTGCTGCATAGTCTGTATACTCGGAAGCCTTCTG
67093318 TGCAGTGGTG
Statistics
Matches: 214, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
131 9 0.04
132 201 0.94
133 4 0.02
ACGTcount: A:0.14, C:0.27, G:0.18, T:0.41
Consensus pattern (132 bp):
TCCTTTGCTCCCTTGGCTTTCTCAGCTGCATAGTCCTTATATTCAGTCGCTTTTTCCATTGTAGC
ATCCTTTGCATCCTTAGCTTTCTGTGCTGCATAGTCTGTATACTCGGAAGCCTTCTGCGCTGTAG
TA
Found at i:67093268 original size:198 final size:199
Alignment explanation
Indices: 67093130--67093575 Score: 652
Period size: 198 Copynumber: 2.3 Consensus size: 199
67093120 AATTGCGGCA
* *
67093130 TCCTTTGCATCCTTAGCTTTCTGTGCT-GCATAATCTGTGTACTCAGAAGCTTTTTGGGCTGTAG
1 TCCTTTGCATCCTTAGCTTTCTG-GCTAGCATAATCTGTATACTCAGAAGCCTTTTGGGCTGTAG
*
67093194 TATCTCTTGCCTCCTTGGCTTTCT-GAGCTGTATAATCCTTATATTCAGCCGCTTTCCCCATTGT
65 TATCTCTTGCCTCCTTGGCTTTCTCG-GCGGTATAATCCTTATATTCAGCCGCTTTCCCCATTGT
* *
67093258 AGCATCCTTTGCAT-CCTTAGTTTTCTGTGCTGCATAG-CCTGTATACTCGGAAGCCTTCTGTGC
129 AGCATCCTTTGC-TCCCTTAGTTTTCTGTGCTGCATAGTCCTGTATACTCAGAAGCCTTCTGTCC
67093321 AGTGGTG
193 AGTGGTG
* * * * *
67093328 TCTTTTGCGTCCTTAGCTTTCTGGGTAGCGTAATCTGTATACTCAGAAGCCTTTTGGGCTGTGGT
1 TCCTTTGCATCCTTAGCTTTCTGGCTAGCATAATCTGTATACTCAGAAGCCTTTTGGGCTGTAGT
*
67093393 ATCTCTTGCCTCCTTGGCTTTCTCGGCGGTATAATCCTTATATTCAGTCGCTTTCCCCATTGTAG
66 ATCTCTTGCCTCCTTGGCTTTCTCGGCGGTATAATCCTTATATTCAGCCGCTTTCCCCATTGTAG
* * * * *
67093458 CATCCTTTGCACCCTTAGTTTTCTGTGCTGCATAGT-CTGTATACTCGGAAGCCTTTTGTGCTGT
131 CATCCTTTGCTCCCTTAGTTTTCTGTGCTGCATAGTCCTGTATACTCAGAAGCCTTCTGTCCAGT
67093522 GGTG
196 GGTG
* *
67093526 TCTTTTGCGTCCTTAGCTTTCTGGGC-AGCATAATCTGTATACTCAGAAGC
1 TCCTTTGCATCCTTAGCTTTCT-GGCTAGCATAATCTGTATACTCAGAAGC
67093576 TTTACCTGTT
Statistics
Matches: 229, Mismatches: 14, Indels: 10
0.91 0.06 0.04
Matches are distributed among these distances:
197 2 0.01
198 224 0.98
199 3 0.01
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.39
Consensus pattern (199 bp):
TCCTTTGCATCCTTAGCTTTCTGGCTAGCATAATCTGTATACTCAGAAGCCTTTTGGGCTGTAGT
ATCTCTTGCCTCCTTGGCTTTCTCGGCGGTATAATCCTTATATTCAGCCGCTTTCCCCATTGTAG
CATCCTTTGCTCCCTTAGTTTTCTGTGCTGCATAGTCCTGTATACTCAGAAGCCTTCTGTCCAGT
GGTG
Found at i:67093349 original size:66 final size:65
Alignment explanation
Indices: 67093133--67093575 Score: 254
Period size: 66 Copynumber: 6.7 Consensus size: 65
67093123 TGCGGCATCC
* * * * * *
67093133 TTTGCATCCTTAGCTTTCTGTGCTGCATAATCTGTGTACTCAGAAGCTTTTTGGGCTGTAGTATC
1 TTTGCATCCTTAGCTTTCTG-GCTGCATAATCTGTATACTCAGAAGCCTTTTGTGCAGTGGTGTC
67093198 T
65 T
* * * * * ** *** *
67093199 CTTGCCTCCTTGGCTTTCTGAGCTGTATAATCCT-TATATTCAGCCG-C-TTTCCCCA-TTGTAG
1 TTTGCATCCTTAGCTTTCTG-GCTGCATAAT-CTGTATACTCAGAAGCCTTTTGTGCAGTGGT-G
*
67093260 CATCC
63 --TCT
* ** * *
67093265 TTTGCATCCTTAGTTTTCTGTGCTGCATAGCCTGTATACTCGGAAGCCTTCTGTGCAGTGGTGTC
1 TTTGCATCCTTAGCTTTCTG-GCTGCATAATCTGTATACTCAGAAGCCTTTTGTGCAGTGGTGTC
67093330 T
65 T
* * * * * *
67093331 TTTGCGTCCTTAGCTTTCTGGGTAGCGTAATCTGTATACTCAGAAGCCTTTTGGGCTGTGGTATC
1 TTTGCATCCTTAGCTTTCTGGCT-GCATAATCTGTATACTCAGAAGCCTTTTGTGCAGTGGTGTC
67093396 T
65 T
* * * * * * ** *** *
67093397 CTTGCCTCCTTGGCTTTCTCGGCGGTATAATCCT-TATATTCAGTCG-C-TTTCCCCA-TTGTAG
1 TTTGCATCCTTAGCTTTCT-GGCTGCATAAT-CTGTATACTCAGAAGCCTTTTGTGCAGTGGT-G
*
67093458 CATCC
63 --TCT
* * * * *
67093463 TTTGCACCCTTAGTTTTCTGTGCTGCATAGTCTGTATACTCGGAAGCCTTTTGTGCTGTGGTGTC
1 TTTGCATCCTTAGCTTTCTG-GCTGCATAATCTGTATACTCAGAAGCCTTTTGTGCAGTGGTGTC
67093528 T
65 T
* *
67093529 TTTGCGTCCTTAGCTTTCTGGGCAGCATAATCTGTATACTCAGAAGC
1 TTTGCATCCTTAGCTTTCT-GGCTGCATAATCTGTATACTCAGAAGC
67093576 TTTACCTGTT
Statistics
Matches: 270, Mismatches: 87, Indels: 40
0.68 0.22 0.10
Matches are distributed among these distances:
63 6 0.02
64 8 0.03
65 8 0.03
66 223 0.83
67 9 0.03
68 10 0.04
69 6 0.02
ACGTcount: A:0.15, C:0.24, G:0.21, T:0.39
Consensus pattern (65 bp):
TTTGCATCCTTAGCTTTCTGGCTGCATAATCTGTATACTCAGAAGCCTTTTGTGCAGTGGTGTCT
Found at i:67095036 original size:28 final size:29
Alignment explanation
Indices: 67094996--67095060 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
67094986 ATTTCTCTTC
* *
67094996 TTATTTTCT-TTTTAT-GTTTTT-TAGTT
1 TTATTTTATATTTTATAGTTTTTATAATT
67095022 TTATATTTATATTTTATAGTTTTTATAATT
1 TTAT-TTTATATTTTATAGTTTTTATAATT
67095052 TTATTTTAT
1 TTATTTTAT
67095061 TTAATAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
26 4 0.12
27 4 0.12
28 6 0.18
29 11 0.33
30 8 0.24
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.72
Consensus pattern (29 bp):
TTATTTTATATTTTATAGTTTTTATAATT
Found at i:67095048 original size:22 final size:22
Alignment explanation
Indices: 67095006--67095060 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
67094996 TTATTTTCTT
* *
67095006 TTTATGTTTTTTAGTTTTAT-A
1 TTTATATTTTATAGTTTTATAA
67095027 TTTATATTTTATAGTTTTTATAA
1 TTTATATTTTATAG-TTTTATAA
67095050 TTT-TATTTTAT
1 TTTATATTTTAT
67095061 TTAATAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 12 0.40
22 14 0.47
23 4 0.13
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (22 bp):
TTTATATTTTATAGTTTTATAA
Found at i:67095097 original size:17 final size:17
Alignment explanation
Indices: 67095077--67095114 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
67095067 AAAATGGCCA
67095077 AATTGTTTAA-ATTTCAT
1 AATT-TTTAATATTTCAT
*
67095094 AATTTTTAATATTTTAT
1 AATTTTTAATATTTCAT
67095111 AATT
1 AATT
67095115 ATAAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (17 bp):
AATTTTTAATATTTCAT
Found at i:67095431 original size:20 final size:23
Alignment explanation
Indices: 67095406--67095451 Score: 71
Period size: 20 Copynumber: 2.1 Consensus size: 23
67095396 TCACTATTCT
67095406 AAATATTAAA-AAT-ATA-TATA
1 AAATATTAAAGAATAATATTATA
67095426 AAATATTAAAGAATAATATTATA
1 AAATATTAAAGAATAATATTATA
67095449 AAA
1 AAA
67095452 ATAAAACAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.43
21 3 0.13
22 3 0.13
23 7 0.30
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
AAATATTAAAGAATAATATTATA
Found at i:67103350 original size:3 final size:3
Alignment explanation
Indices: 67103306--67103335 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
67103296 TTCGTATCAG
67103306 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
67103336 AATTTTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:67112944 original size:33 final size:33
Alignment explanation
Indices: 67112902--67112970 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
67112892 TTGCTTTAAG
*
67112902 AATGTTAATGTAGGTATTGATTAGTTATGTTGT
1 AATGTTAATGCAGGTATTGATTAGTTATGTTGT
67112935 AATGTTAATGCAGGTATTGATTAGTTATGTTGT
1 AATGTTAATGCAGGTATTGATTAGTTATGTTGT
67112968 AAT
1 AAT
67112971 AGCTTATAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.46
Consensus pattern (33 bp):
AATGTTAATGCAGGTATTGATTAGTTATGTTGT
Found at i:67114347 original size:31 final size:31
Alignment explanation
Indices: 67114312--67114375 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
67114302 TTCATCATAG
67114312 AGTAAATTACACCCAAGGTCACTCAAATATT
1 AGTAAATTACACCCAAGGTCACTCAAATATT
* * *
67114343 AGTAAATTGCGCCCAAGGTCACTCAACTATT
1 AGTAAATTACACCCAAGGTCACTCAAATATT
67114374 AG
1 AG
67114376 CAAGTTTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (31 bp):
AGTAAATTACACCCAAGGTCACTCAAATATT
Found at i:67138363 original size:46 final size:46
Alignment explanation
Indices: 67138310--67138432 Score: 149
Period size: 46 Copynumber: 2.6 Consensus size: 46
67138300 GTAGACGATG
* *
67138310 CATGTCCCAGACATATCTTATACTGGCTTACGTCTCGAGGCCGA-AA
1 CATGTCCCAGACATATCTTACACTGGCTT-CGTCTCAAGGCCGATAA
* * **
67138356 CATGTCCCAGACATATCTTACACTAGCATTCGTCTCAATGCCGATGC
1 CATGTCCCAGACATATCTTACACTGGC-TTCGTCTCAAGGCCGATAA
*
67138403 CATGTCCCAGACATGGTCTTACACTGGCTT
1 CATGTCCCAGACAT-ATCTTACACTGGCTT
67138433 TCAAAATGTG
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 37 0.56
47 18 0.27
48 11 0.17
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATATCTTACACTGGCTTCGTCTCAAGGCCGATAA
Found at i:67148980 original size:10 final size:10
Alignment explanation
Indices: 67148967--67149016 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
67148957 TAATTACCCC
67148967 CTCTCTCTTT
1 CTCTCTCTTT
67148977 CTCTCTC--T
1 CTCTCTCTTT
**
67148985 CTCTCTCTCC
1 CTCTCTCTTT
67148995 CTCTCTCTTT
1 CTCTCTCTTT
*
67149005 CTTTCTCTTT
1 CTCTCTCTTT
67149015 CT
1 CT
67149017 TTGGCTTTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
8 8 0.24
10 26 0.76
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (10 bp):
CTCTCTCTTT
Found at i:67148983 original size:4 final size:4
Alignment explanation
Indices: 67148967--67149012 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
67148957 TAATTACCCC
* * * *
67148967 CTCT CTCT TTCT CTCT CTCT CTCT CTCC CTCT CTCT TTCT TTCT CT
1 CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CT
67149013 TTCTTTGGCT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (4 bp):
CTCT
Found at i:67157302 original size:20 final size:20
Alignment explanation
Indices: 67157257--67157308 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
67157247 ATTTTTACAA
67157257 TTTAATTTTTTAATAAAAAT
1 TTTAATTTTTTAATAAAAAT
** **
67157277 GATAATTTTTTAATAAGTAT
1 TTTAATTTTTTAATAAAAAT
67157297 TTTAATTATTTT
1 TTTAATT-TTTT
67157309 TTATTAAGGG
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (20 bp):
TTTAATTTTTTAATAAAAAT
Found at i:67160148 original size:12 final size:12
Alignment explanation
Indices: 67160131--67160156 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67160121 CAAATATTAG
67160131 CTTATTAATTGT
1 CTTATTAATTGT
67160143 CTTATTAATTGT
1 CTTATTAATTGT
67160155 CT
1 CT
67160157 AAGTTCAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.12, G:0.08, T:0.58
Consensus pattern (12 bp):
CTTATTAATTGT
Found at i:67162233 original size:35 final size:35
Alignment explanation
Indices: 67162194--67162289 Score: 149
Period size: 35 Copynumber: 2.8 Consensus size: 35
67162184 CGTTCGTGAC
* *
67162194 CCCTTTGAGAATTGGAGCTAGTGACGTGTATTCAA
1 CCCTTTGAGAATTAGAGCTAGTGACATGTATTCAA
*
67162229 CCCTTTGAGAATTAGAGCTAGTGATATGTATTCAA
1 CCCTTTGAGAATTAGAGCTAGTGACATGTATTCAA
*
67162264 CTCTTTGAGAATTAGAG-TAGTGACAT
1 CCCTTTGAGAATTAGAGCTAGTGACAT
67162290 ATCTAGAGGG
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
34 8 0.14
35 48 0.86
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (35 bp):
CCCTTTGAGAATTAGAGCTAGTGACATGTATTCAA
Found at i:67177994 original size:44 final size:44
Alignment explanation
Indices: 67177853--67178010 Score: 169
Period size: 44 Copynumber: 3.6 Consensus size: 44
67177843 ACTGAAGATA
*
67177853 ACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCT
1 ACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCT
* * * * * * * *
67177897 ATAAACCTTGTCTCCCTGAA-TATGTAGTAGAGTAGGA-TGAAGTT
1 ACAAATCTTATCTCTCTGAAGT-TGCAGTGGAGCA-GATTGAAGCT
*
67177941 ACTAATCTTATCTC-CTTGAAGTTGCAGTGGAGCAGATTGAAGCT
1 ACAAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAGCT
*
67177985 ACAAGTCTTATCTCTCTGAAGTTGCA
1 ACAAATCTTATCTCTCTGAAGTTGCA
67178011 ATAGAGTGGA
Statistics
Matches: 89, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
43 4 0.04
44 81 0.91
45 4 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (44 bp):
ACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCT
Found at i:67178016 original size:88 final size:88
Alignment explanation
Indices: 67177856--67178026 Score: 222
Period size: 88 Copynumber: 1.9 Consensus size: 88
67177846 GAAGATAACA
* *
67177856 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAACCTTGTCTCCCTGAATATG
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTATCTCCCTGAATATG
* *
67177921 TAGTAGAGTAGGAT-GAAGTTACT
66 CAATAGAGT-GGATCGAAGTTACT
* ** *
67177944 AATCTTATCTC-CTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAGTCTTATCTCTCTGAAGT-
1 AATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTATCTCCCTGAA-TA
67178007 TGCAATAGAGTGGATCGAAG
64 TGCAATAGAGTGGATCGAAG
67178027 CAACAATTCC
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
87 5 0.07
88 66 0.92
89 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (88 bp):
AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTATCTCCCTGAATATG
CAATAGAGTGGATCGAAGTTACT
Found at i:67179422 original size:16 final size:16
Alignment explanation
Indices: 67179401--67179440 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
67179391 CTTTAATCAT
*
67179401 TTTATTTACTT-ATTTA
1 TTTATTCACTTGA-TTA
67179417 TTTATTCACTTGATTA
1 TTTATTCACTTGATTA
67179433 TTTATTCA
1 TTTATTCA
67179441 TTTATTTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 21 0.95
17 1 0.05
ACGTcount: A:0.25, C:0.10, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTATTCACTTGATTA
Found at i:67179437 original size:24 final size:24
Alignment explanation
Indices: 67179410--67179469 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 24
67179400 TTTTATTTAC
67179410 TTATTTATTTATTCACTTGATTAT
1 TTATTTATTTATTCACTTGATTAT
* *
67179434 TTATTCATTTA-T---TTGATTGT
1 TTATTTATTTATTCACTTGATTAT
*
67179454 TTGTTTATTTATTCAC
1 TTATTTATTTATTCAC
67179470 ATATCATTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
20 16 0.57
21 1 0.04
23 1 0.04
24 10 0.36
ACGTcount: A:0.22, C:0.08, G:0.07, T:0.63
Consensus pattern (24 bp):
TTATTTATTTATTCACTTGATTAT
Found at i:67179463 original size:20 final size:20
Alignment explanation
Indices: 67179401--67179466 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
67179391 CTTTAATCAT
*
67179401 TTTATTT-ACTTATTTATTTA
1 TTTATTTGA-TTATTTATTCA
* *
67179421 TTCACTTGATTATTTATTCA
1 TTTATTTGATTATTTATTCA
* * *
67179441 TTTATTTGATTGTTTGTTTA
1 TTTATTTGATTATTTATTCA
67179461 TTTATT
1 TTTATT
67179467 CACATATCAT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 36 0.97
21 1 0.03
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.67
Consensus pattern (20 bp):
TTTATTTGATTATTTATTCA
Found at i:67179559 original size:3 final size:3
Alignment explanation
Indices: 67179551--67179582 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
67179541 TGTTTGTGCC
67179551 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
67179583 CAATAGATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:67179699 original size:4 final size:4
Alignment explanation
Indices: 67179690--67179728 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
67179680 TTTTTCTTAA
* *
67179690 TATT TATT TATT GTATC TATT TATT TATT CATT TATT TA
1 TATT TATT TATT -TATT TATT TATT TATT TATT TATT TA
67179729 CACATTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 27 0.90
5 3 0.10
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (4 bp):
TATT
Found at i:67179752 original size:6 final size:6
Alignment explanation
Indices: 67179741--67179774 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
67179731 CATTTTTTTA
*
67179741 TTATTC TTATTC TTATTC TTATTC TTATTG TTAT
1 TTATTC TTATTC TTATTC TTATTC TTATTC TTAT
67179775 ATTTTTATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.12, G:0.03, T:0.68
Consensus pattern (6 bp):
TTATTC
Found at i:67179857 original size:25 final size:25
Alignment explanation
Indices: 67179824--67179882 Score: 118
Period size: 25 Copynumber: 2.4 Consensus size: 25
67179814 ATTAAAATTT
67179824 TTTTACTTAACATTATGAATATCTA
1 TTTTACTTAACATTATGAATATCTA
67179849 TTTTACTTAACATTATGAATATCTA
1 TTTTACTTAACATTATGAATATCTA
67179874 TTTTACTTA
1 TTTTACTTA
67179883 CTTATTTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.34, C:0.12, G:0.03, T:0.51
Consensus pattern (25 bp):
TTTTACTTAACATTATGAATATCTA
Found at i:67181693 original size:46 final size:46
Alignment explanation
Indices: 67181623--67181895 Score: 395
Period size: 46 Copynumber: 5.9 Consensus size: 46
67181613 TTTGACATGA
* * * * * * *
67181623 TGCCATAGTGTCTTTCAACTATGGTCCTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
67181669 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
67181715 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
67181761 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
67181807 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
67181853 TGCCATAGTATCTTTCAACCATAGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
67181896 AAAAGCACAC
Statistics
Matches: 210, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 206 0.98
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:67183438 original size:27 final size:27
Alignment explanation
Indices: 67183401--67183452 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
67183391 TGCAAGATAT
* * *
67183401 ATATATAATATGATGTTAAGAGTATAC
1 ATATAAAATATAATGTTAAAAGTATAC
67183428 ATATAAAATATAATGTTAAAAGTAT
1 ATATAAAATATAATGTTAAAAGTAT
67183453 GTATGCATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.50, C:0.02, G:0.12, T:0.37
Consensus pattern (27 bp):
ATATAAAATATAATGTTAAAAGTATAC
Found at i:67183994 original size:18 final size:17
Alignment explanation
Indices: 67183973--67184006 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
67183963 ATACATTTAA
67183973 TATAACAAATATAAATAT
1 TATAACAAATA-AAATAT
67183991 TATAACAAATAAAATA
1 TATAACAAATAAAATA
67184007 CAGAAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (17 bp):
TATAACAAATAAAATAT
Found at i:67185096 original size:15 final size:15
Alignment explanation
Indices: 67185076--67185105 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67185066 TTGGGTTTAG
67185076 TTGGGCTAATGGGTA
1 TTGGGCTAATGGGTA
*
67185091 TTGGGCTGATGGGTA
1 TTGGGCTAATGGGTA
67185106 AATTTGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.43, T:0.33
Consensus pattern (15 bp):
TTGGGCTAATGGGTA
Found at i:67185161 original size:25 final size:24
Alignment explanation
Indices: 67185110--67185164 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
67185100 TGGGTAAATT
* *
67185110 TGGGTTTAATTTGTATTGGGTTTG
1 TGGGTTTAATTGGTATTGGGTTAG
67185134 TGGGTTTAATTGGGT-TATGGGTTAG
1 TGGGTTTAATT-GGTAT-TGGGTTAG
67185159 TGGGTT
1 TGGGTT
67185165 AAGGGGTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.13, C:0.00, G:0.38, T:0.49
Consensus pattern (24 bp):
TGGGTTTAATTGGTATTGGGTTAG
Found at i:67186043 original size:55 final size:56
Alignment explanation
Indices: 67185960--67186134 Score: 282
Period size: 57 Copynumber: 3.1 Consensus size: 56
67185950 TAAAAGCAGA
* *
67185960 TTTTGAAAAACA-GAAATTAAAGGGCTCAACTCACCTTTCGCAATATGAGTTGA-T
1 TTTTGAAAAACATGAATTTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
67186014 TTTTGAAAAACATGAATTTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 TTTTGAAAAACATGAATTTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
* *
67186071 TTTTGAAAAACATAAATTGAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 TTTTGAAAAACATGAATTTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATT
67186127 TTTTGAAA
1 TTTTGAAA
67186135 GGTAGAAATT
Statistics
Matches: 112, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
54 12 0.11
55 38 0.34
56 10 0.09
57 52 0.46
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (56 bp):
TTTTGAAAAACATGAATTTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATT
Found at i:67186284 original size:170 final size:167
Alignment explanation
Indices: 67186071--67186389 Score: 442
Period size: 167 Copynumber: 1.9 Consensus size: 167
67186061 GAGTTGATTT
* * * *
67186071 TTTTGAAAAACATAAATTGAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAG
1 TTTTGAAAAACAGAAATTGAAAAGCCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAA
* * * * ** * *
67186136 GTAGAAATTGAAAAAACAAAAATTGAAATTACCTCAGCGTATCGTGAGGCTCAACTCATCTCTCG
65 ATAGAAACTG--AAAACAAAAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCA
* * *
67186201 CAATGTGAGTTGATTTTTTGAAACTTGATTTGAAAAGTAGA
128 CAATATGAATTGA-CTTTTGAAACTTGATTTGAAAAGTAGA
67186242 TTTTGAAAAACAGAAATT-AAAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
1 TTTTGAAAAACAGAAATTGAAAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
* *
67186306 TAGAAACTGAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAA
66 TAGAAACTGAAAACAAAAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCACAA
67186371 TATGAATTGACTTTTGAAA
131 TATGAATTGACTTTTGAAA
67186390 AACAGAAATT
Statistics
Matches: 131, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
166 8 0.06
167 56 0.43
169 17 0.13
170 33 0.25
171 17 0.13
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (167 bp):
TTTTGAAAAACAGAAATTGAAAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
TAGAAACTGAAAACAAAAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCACAA
TATGAATTGACTTTTGAAACTTGATTTGAAAAGTAGA
Found at i:67186329 original size:81 final size:82
Alignment explanation
Indices: 67186073--67186331 Score: 218
Period size: 81 Copynumber: 3.1 Consensus size: 82
67186063 GTTGATTTTT
* * **
67186073 TTGAAAAACATAAATTGAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGGT
1 TTGAAAAACAGAAATT-AAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAT
*
67186138 AGAAATTGAAAAAACAAAAA
65 AGAAATTG--AAAACAGAAA
* ** **** * *
67186158 TTGAAATTACCTCAGCGTATCGTGAGGCTCAACTCATCTCTCGCAATGTGAGTTGATTTTTTG-A
1 TTGAAA--A--ACAG-AAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
* * * * **
67186222 AACTTG-ATTTGAAAAGTAGATT
61 AAATAGAAATTGAAAA-CAGAAA
*
67186244 TTGAAAAACAGAAATTAAAAGCCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATA
1 TTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATA
*
67186308 GAAACTGAAAACAGAAA
66 GAAATTGAAAACAGAAA
67186325 TTGAAAA
1 TTGAAAA
67186332 TACCTCAGCG
Statistics
Matches: 130, Mismatches: 36, Indels: 20
0.70 0.19 0.11
Matches are distributed among these distances:
80 6 0.05
81 46 0.35
82 10 0.08
84 1 0.01
85 10 0.08
86 8 0.06
87 5 0.04
88 4 0.03
89 38 0.29
90 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (82 bp):
TTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATA
GAAATTGAAAACAGAAA
Found at i:67186412 original size:54 final size:54
Alignment explanation
Indices: 67186349--67186456 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
67186339 GCGTGCCCCG
67186349 AGGCTCAACTCACCTCTCACAATATGAATTGACTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCACAATATGAATTGACTTTTGAAAAACAGAAATTAAA
** * *
67186403 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCACAATATGAATTGACTTTTGAAAAACAGAAATTAAA
67186457 GACAGAAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.28
Consensus pattern (54 bp):
AGGCTCAACTCACCTCTCACAATATGAATTGACTTTTGAAAAACAGAAATTAAA
Found at i:67186430 original size:140 final size:140
Alignment explanation
Indices: 67186242--67186685 Score: 608
Period size: 140 Copynumber: 3.1 Consensus size: 140
67186232 GAAAAGTAGA
*
67186242 TTTTGAAAAACAGAAATTAAAAGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAT
1 TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAT
* * * *
67186307 AGAAACTGAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAAT
66 AGAAACTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
* *
67186372 ATGAATTGAC
131 ATGAGTTGAT
* *
67186382 TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAC
1 TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAT
* * ** *
67186447 AGAAA-TTAAAGACAGAAATTGAAATTACCTCAGCGTATATTGAGGCTCAACTCACCTCTCGTAA
66 AGAAACTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
67186511 TATGAGTTGAT
130 TATGAGTTGAT
* * *
67186522 TTTTGACAAATAGAAATTAAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAGAA
1 TTTTGAAAAACAGAAATT-AAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
*
67186586 TAAAAACACAATTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
65 T-AGAA-AC----TG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
67186651 CTCGCAATATGAGTCT-AT
123 CTCGCAATATGAGT-TGAT
67186669 TTTTG-AAAACAGAAATT
1 TTTTGAAAAACAGAAATT
67186686 TGAAAAACAG
Statistics
Matches: 266, Mismatches: 27, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
139 4 0.02
140 146 0.55
141 37 0.14
142 1 0.00
146 10 0.04
147 64 0.24
148 4 0.02
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (140 bp):
TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAT
AGAAACTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGAT
Found at i:67186689 original size:14 final size:14
Alignment explanation
Indices: 67186670--67186705 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
67186660 TGAGTCTATT
67186670 TTTGAAAACAGAAA
1 TTTGAAAACAGAAA
67186684 TTTGAAAAACAGAAA
1 TTTG-AAAACAGAAA
67186699 -TTGAAAA
1 TTTGAAAA
67186706 TACCTCAGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.19
14 7 0.33
15 10 0.48
ACGTcount: A:0.58, C:0.06, G:0.14, T:0.22
Consensus pattern (14 bp):
TTTGAAAACAGAAA
Found at i:67186694 original size:15 final size:15
Alignment explanation
Indices: 67186670--67186705 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
67186660 TGAGTCTATT
67186670 TTTG-AAAACAGAAA
1 TTTGAAAAACAGAAA
67186684 TTTGAAAAACAGAAA
1 TTTGAAAAACAGAAA
67186699 -TTGAAAA
1 TTTGAAAA
67186706 TACCTCAGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.58, C:0.06, G:0.14, T:0.22
Consensus pattern (15 bp):
TTTGAAAAACAGAAA
Found at i:67186716 original size:87 final size:88
Alignment explanation
Indices: 67186544--67186771 Score: 343
Period size: 87 Copynumber: 2.6 Consensus size: 88
67186534 GAAATTAAAA
* * *
67186544 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAGAATAAAAACACAATTTGAAAAACAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT--TGAA-AAACAGA-AATTTGAAAAACAG
* *
67186609 AAATTGAAATTACCTCAGCGTGTCCTG
62 AAATTGAAAATACCTCAGCGTGTACTG
67186636 AGGCTCAACTCACCTCTCGCAATATGAGTCT-ATTTTTG-AAAACAGAAATTTGAAAAACAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGT-TGATTTTTGAAAAACAGAAATTTGAAAAACAGAAA
*
67186699 TTGAAAATACCTCAGCGTGTATTG
65 TTGAAAATACCTCAGCGTGTACTG
67186723 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
67186772 CTAAAACATC
Statistics
Matches: 127, Mismatches: 6, Indels: 10
0.89 0.04 0.07
Matches are distributed among these distances:
86 1 0.01
87 74 0.58
88 15 0.12
89 1 0.01
90 1 0.01
92 34 0.27
93 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (88 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTGAAAAACAGAAAT
TGAAAATACCTCAGCGTGTACTG
Done.