Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 218 of 250
Found at i:67434619 original size:22 final size:23
Alignment explanation
Indices: 67434594--67434657 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
67434584 AATTTTTTTA
*
67434594 AAAAATTATTTAAAATT-AATAT
1 AAAAATTATTAAAAATTCAATAT
67434616 AAAAGA-TA-TAAAAATTCAATAT
1 AAAA-ATTATTAAAAATTCAATAT
* *
67434638 AAAAATTATAAAAAAGTCAA
1 AAAAATTATTAAAAATTCAA
67434658 ACATTAGCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
21 8 0.23
22 17 0.49
23 10 0.29
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (23 bp):
AAAAATTATTAAAAATTCAATAT
Found at i:67434733 original size:40 final size:41
Alignment explanation
Indices: 67434648--67434733 Score: 131
Period size: 40 Copynumber: 2.1 Consensus size: 41
67434638 AAAAATTATA
* *
67434648 AAAAAGTCAAACATTAGCGGCGTTTATGATAAAAACGCCGC
1 AAAAAGACAAACAATAGCGGCGTTTATGATAAAAACGCCGC
*
67434689 -AAAAGACAAGCAATAGCGGCGTTTAT-ATAAAAACGCCGC
1 AAAAAGACAAACAATAGCGGCGTTTATGATAAAAACGCCGC
67434728 AAAAAG
1 AAAAAG
67434734 TAATTTATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
39 13 0.32
40 28 0.68
ACGTcount: A:0.45, C:0.19, G:0.20, T:0.16
Consensus pattern (41 bp):
AAAAAGACAAACAATAGCGGCGTTTATGATAAAAACGCCGC
Found at i:67434919 original size:20 final size:19
Alignment explanation
Indices: 67434898--67434935 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
67434888 TATTTCTCTC
*
67434898 CCCCGATTCCCTTTTCTTT
1 CCCCAATTCCCTTTTCTTT
67434917 -CCCAATTCCCTTTTCTTT
1 CCCCAATTCCCTTTTCTTT
67434935 C
1 C
67434936 TCATCCTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.08, C:0.42, G:0.03, T:0.47
Consensus pattern (19 bp):
CCCCAATTCCCTTTTCTTT
Found at i:67437879 original size:33 final size:33
Alignment explanation
Indices: 67437828--67437894 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
67437818 ATCCTTTGGA
*
67437828 TCTCTTTGCTACTAGTTCCAATGCGTATCTTCT
1 TCTCATTGCTACTAGTTCCAATGCGTATCTTCT
* *
67437861 TCTCATTGCTACTGGTTCCAATGCGTATGTTCT
1 TCTCATTGCTACTAGTTCCAATGCGTATCTTCT
67437894 T
1 T
67437895 AAGTATGAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.15, C:0.25, G:0.15, T:0.45
Consensus pattern (33 bp):
TCTCATTGCTACTAGTTCCAATGCGTATCTTCT
Found at i:67438342 original size:241 final size:241
Alignment explanation
Indices: 67437919--67439799 Score: 3537
Period size: 241 Copynumber: 7.8 Consensus size: 241
67437909 ATGAATTAAT
67437919 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
67437984 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
67438049 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
*
67438114 AAAAAGACTTGAAAAAAGTTCTATCAAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
*
67438160 TTTATTACCATGTAGCTAGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
* *
67438225 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGAGCTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
67438290 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
*
67438355 AAAAAGACTTGAAAAAAGCTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
*
67438401 TTTATTACCATGTAGCTAGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
** *
67438466 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACAAGCTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
67438531 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
*
67438596 AAAAAGACTTGAAAAAAGCTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
* *
67438642 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAATAATAGCTGACCTTCTCTCCAACATT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
67438707 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
67438772 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
*
67438837 AAAAAGACTTGAAAAAATTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
67438883 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
67438948 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
*
67439013 CTGTAAGATATAATGGATCCTTCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
*
67439078 AAAAAGACTTGAAAAAAGTTCTATCAAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
*
67439124 TTTATTACCATGTAGCTAGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
*
67439189 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGAGTTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
67439254 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
*
67439319 AAAAAGACTTGAAAAAAGCTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
* *
67439365 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAATAATAGCTGACCTTCTCTCCAACATT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
67439430 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
*
67439495 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAATGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
67439560 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
* *
67439606 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAACTGACCTTCTCTCCAACATT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
* *
67439671 TTTTTAAATATTTTAAAGATTTAAAGTATATAGGCTGGAAACCTGACGGGTTGTCTTATATCGAG
66 TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
67439736 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT
67439800 ACTATATTCA
Statistics
Matches: 1605, Mismatches: 35, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 1605 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33
Consensus pattern (241 bp):
TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
TTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
Found at i:67439942 original size:9 final size:9
Alignment explanation
Indices: 67439919--67440046 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
67439909 ATTGATCATT
*
67439919 ACTTAAATA
1 ACTTACATA
*
67439928 AATTACATA
1 ACTTACATA
67439937 ACTTACATA
1 ACTTACATA
* *
67439946 ACTCATATA
1 ACTTACATA
67439955 ACTTACATA
1 ACTTACATA
*
67439964 ATTTACATAACA
1 ACTTACAT---A
67439976 ACTTACATA
1 ACTTACATA
*
67439985 ACTCACATA
1 ACTTACATA
67439994 ACTTACATA
1 ACTTACATA
*
67440003 ATTTACATA
1 ACTTACATA
*
67440012 ACTCACATA
1 ACTTACATA
*
67440021 ACGTACATAACA
1 ACTTACAT---A
67440033 ACTTACATA
1 ACTTACATA
67440042 ACTTA
1 ACTTA
67440047 ACTAATACAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 80 0.83
12 16 0.17
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:67439988 original size:39 final size:39
Alignment explanation
Indices: 67439936--67440013 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
67439926 TAAATTACAT
*
67439936 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
67439975 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
67440014 TCACATAACG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:67440013 original size:57 final size:57
Alignment explanation
Indices: 67439932--67440044 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 57
67439922 TAAATAAATT
* * **
67439932 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* *
67439989 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
67440045 TAACTAATAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:67445947 original size:31 final size:31
Alignment explanation
Indices: 67445901--67445967 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
67445891 TTGGTTGTAT
* *
67445901 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
67445932 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
67445963 TTTTA
1 TTTTA
67445968 ATGCGGGAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:67446067 original size:43 final size:43
Alignment explanation
Indices: 67446020--67446117 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 43
67446010 TCTGCCAAAA
*
67446020 TTAGTGGCGTTTGTAGAAAAAACGCCGCTAAAAGCCTTGACCT
1 TTAGTGGCGTTTGTACAAAAAACGCCGCTAAAAGCCTTGACCT
* * * * *
67446063 TTAGTGGCGTTTTTCCCACAAACGCTGCTAAAAGCCTTGACCT
1 TTAGTGGCGTTTGTACAAAAAACGCCGCTAAAAGCCTTGACCT
*
67446106 TTAGCGGCGTTT
1 TTAGTGGCGTTT
67446118 TTTTTCCAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.30
Consensus pattern (43 bp):
TTAGTGGCGTTTGTACAAAAAACGCCGCTAAAAGCCTTGACCT
Found at i:67446442 original size:12 final size:12
Alignment explanation
Indices: 67446425--67446449 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67446415 TTTTAAACCT
67446425 TATTAAATTCTA
1 TATTAAATTCTA
67446437 TATTAAATTCTA
1 TATTAAATTCTA
67446449 T
1 T
67446450 CTATTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (12 bp):
TATTAAATTCTA
Found at i:67450616 original size:30 final size:30
Alignment explanation
Indices: 67450582--67450680 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
67450572 CTAACCTTTG
*
67450582 CCACCACCAAATCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
67450612 CCACCACCAGCTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
67450642 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
67450672 CCACCACCA
1 CCACCACCA
67450681 CTTGTACCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.26, C:0.49, G:0.07, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:67451195 original size:23 final size:23
Alignment explanation
Indices: 67451158--67451285 Score: 93
Period size: 23 Copynumber: 5.5 Consensus size: 23
67451148 CTTTTTTTGT
*
67451158 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATACTA
* *
67451181 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATACTA
** * *
67451203 TATTAGGTATATTCTAAATTCTA
1 TATTATATATATTCTTAATACTA
*
67451226 TATTACGTATATA-TATT-ATACTA
1 TATTA--TATATATTCTTAATACTA
* *
67451249 TTTTATGTATATATCTTTAATACTA
1 TATTATATATAT-TC-TTAATACTA
67451274 TATTATATATAT
1 TATTATATATAT
67451286 ATTTTACATG
Statistics
Matches: 79, Mismatches: 18, Indels: 14
0.71 0.16 0.13
Matches are distributed among these distances:
21 5 0.06
22 17 0.22
23 29 0.37
24 8 0.10
25 20 0.25
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (23 bp):
TATTATATATATTCTTAATACTA
Found at i:67451261 original size:25 final size:25
Alignment explanation
Indices: 67451223--67451367 Score: 86
Period size: 25 Copynumber: 6.0 Consensus size: 25
67451213 ATTCTAAATT
**
67451223 CTATATTACGTATATATA-TT-ATA
1 CTATATTATATATATATATTTAATA
* * *
67451246 CTATTTTATGTATATATCTTTAATA
1 CTATATTATATATATATATTTAATA
*
67451271 CTATATTATATATATAT-TTTACATG
1 CTATATTATATATATATATTTA-ATA
* * *
67451296 TTATCTTATGTATATAT-TTTAAT-
1 CTATATTATATATATATATTTAATA
* * * * *
67451319 -TATATTATGTATGTATTTTTTACA
1 CTATATTATATATATATATTTAATA
* * *
67451343 CTATATTATGTACATATTTTTAATA
1 CTATATTATATATATATATTTAATA
67451368 TTATCACATA
Statistics
Matches: 99, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
22 14 0.14
23 19 0.19
24 8 0.08
25 58 0.59
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (25 bp):
CTATATTATATATATATATTTAATA
Found at i:67451352 original size:47 final size:46
Alignment explanation
Indices: 67451158--67451385 Score: 146
Period size: 48 Copynumber: 4.9 Consensus size: 46
67451148 CTTTTTTTGT
*
67451158 TATTAT-TATAT-TTCTTAATATTATATTATATATATTCTTTTA-A-TA
1 TATTATGTATATATT-TTAATA-TATATTATATATA-TATTTTACACTA
* * * * ** * *
67451203 TATTAGGTATAT-TCTAAATTCTATATTACGTATATATATTATACTA
1 TATTATGTATATATTTTAA-TATATATTATATATATATTTTACACTA
* *
67451249 TTTTATGTATATATCTTTAATACTATATTATATATATATTTTACATGTTA
1 TATTATGTATATAT-TTTAATA-TATATTATATATATATTTTACA--CTA
* * *
67451299 TCTTATGTATATATTTTAAT-TATATTATGTATGTATTTTTTACACTA
1 TATTATGTATATATTTTAATATATATTA--TATATATATTTTACACTA
* * * *
67451346 TATTATGTACATATTTTTAATAT-TATCACATATTTATTTT
1 TATTATGTATATA-TTTTAATATATATTATATATATATTTT
67451386 TTATATATGT
Statistics
Matches: 141, Mismatches: 29, Indels: 25
0.72 0.15 0.13
Matches are distributed among these distances:
44 5 0.04
45 20 0.14
46 27 0.19
47 22 0.16
48 32 0.23
49 20 0.14
50 15 0.11
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.56
Consensus pattern (46 bp):
TATTATGTATATATTTTAATATATATTATATATATATTTTACACTA
Found at i:67451372 original size:72 final size:73
Alignment explanation
Indices: 67451232--67451372 Score: 169
Period size: 72 Copynumber: 1.9 Consensus size: 73
67451222 TCTATATTAC
* * * *
67451232 GTATATATATTATACTATTTTATGTATATATCTTTAATACTATATTATATATATATTTTACATGT
1 GTATATATATTATACTATATTATGTATATATCTTTAACACTATATTATATACATATTTTACATAT
67451297 TATCTTAT
66 TATCTTAT
* * * * * *
67451305 GTATATATTTTA-ATTATATTATGTATGTATTTTTTACACTATATTATGTACATATTTTTA-ATA
1 GTATATATATTATACTATATTATGTATATATCTTTAACACTATATTATATACATA-TTTTACATA
67451368 TTATC
65 TTATC
67451373 ACATATTTAT
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
72 41 0.72
73 16 0.28
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.55
Consensus pattern (73 bp):
GTATATATATTATACTATATTATGTATATATCTTTAACACTATATTATATACATATTTTACATAT
TATCTTAT
Found at i:67451383 original size:23 final size:23
Alignment explanation
Indices: 67451357--67451405 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
67451347 ATTATGTACA
67451357 TATTTTTAATATTAT-CACATATT
1 TATTTTTAATA-TATGCACATATT
* *
67451380 TATTTTTTATATATGTACATATT
1 TATTTTTAATATATGCACATATT
67451403 TAT
1 TAT
67451406 GTAGTATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (23 bp):
TATTTTTAATATATGCACATATT
Found at i:67451542 original size:16 final size:15
Alignment explanation
Indices: 67451518--67451552 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
67451508 TAATTATTAT
67451518 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
67451534 TATTTTAATATTTTA
1 TATTCTAATATTTTA
67451549 TATT
1 TATT
67451553 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:67452356 original size:39 final size:39
Alignment explanation
Indices: 67452302--67452510 Score: 391
Period size: 39 Copynumber: 5.4 Consensus size: 39
67452292 GTATTTGATG
*
67452302 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
67452341 TATATCCGGATTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
67452380 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
67452419 TATATCCGGATTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
67452458 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
67452497 TATATCCGGACTTA
1 TATATCCGGACTTA
67452511 AGTCCCAAAG
Statistics
Matches: 165, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 165 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:67452566 original size:39 final size:39
Alignment explanation
Indices: 67452486--67452674 Score: 218
Period size: 39 Copynumber: 4.8 Consensus size: 39
67452476 CCGCAGGCTA
* * *
67452486 TGTGCTGGAATTATATCCGGACTTAAGTCCCAAAGGAATT
1 TGTGCTGGTATTATATCCGGGC-TAAGTCCCAAAGGCATT
*
67452526 TGTGCTGGTGTTATATCCGGGCTAAGTCCCAAAGGCATT
1 TGTGCTGGTATTATATCCGGGCTAAGTCCCAAAGGCATT
* *
67452565 TGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATT
1 TGTGCTGGTATTATATCCGGGCTAAGTCCCAAAGGCATT
* * **
67452604 TATGCTGGTATTATATCCGAGCTAAAGTCCCGCAGGC-TT
1 TGTGCTGGTATTATATCCGGGCT-AAGTCCCAAAGGCATT
* * *
67452643 TATGCTAGTATTATATACGGGCTTAAAGTCCC
1 TGTGCTGGTATTATATCCGGGC-T-AAGTCCC
67452675 GCATGCTTTC
Statistics
Matches: 135, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 95 0.70
40 40 0.30
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (39 bp):
TGTGCTGGTATTATATCCGGGCTAAGTCCCAAAGGCATT
Found at i:67459497 original size:16 final size:16
Alignment explanation
Indices: 67459468--67459511 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
67459458 ATTTTTTATA
67459468 TACATATT-TAATCATC
1 TACATATTAT-ATCATC
* *
67459484 TATATATTATATCATT
1 TACATATTATATCATC
67459500 TACATATTATAT
1 TACATATTATAT
67459512 TTATTTTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 23 0.96
17 1 0.04
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (16 bp):
TACATATTATATCATC
Found at i:67462938 original size:39 final size:39
Alignment explanation
Indices: 67462884--67462961 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
67462874 ATGTTTAAAT
67462884 TATTAAAGAGCCTATTTTCAATAGAAACAAACGGAAACA
1 TATTAAAGAGCCTATTTTCAATAGAAACAAACGGAAACA
* * *
67462923 TATTAATGAGTCTATTTTCAATAGAAACAAATGGAAACA
1 TATTAAAGAGCCTATTTTCAATAGAAACAAACGGAAACA
67462962 AACGGAAACA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (39 bp):
TATTAAAGAGCCTATTTTCAATAGAAACAAACGGAAACA
Found at i:67468656 original size:46 final size:46
Alignment explanation
Indices: 67468580--67468892 Score: 412
Period size: 46 Copynumber: 6.8 Consensus size: 46
67468570 CGATTTCATA
* * * * *
67468580 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATATCACGTTGCCATG
* * *** **
67468626 GTATCTTTCAACCATGGTCTTATTTATTTTCCCGTCATATTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGTTGCCATG
* * *
67468673 GTATCTTTCAACCATAGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
*
67468719 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
*
67468765 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
* *
67468811 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
* *
67468857 GTATCTTTCAACCATGGTCTTACACATTCCATATCA
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCA
67468893 GATAGCACAC
Statistics
Matches: 243, Mismatches: 22, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
46 207 0.85
47 36 0.15
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
Found at i:67473008 original size:33 final size:34
Alignment explanation
Indices: 67472970--67473044 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 34
67472960 ATATGTTGAA
* *
67472970 TAATAATAA-TACTTAT-ATCTTTAATAATGATAC
1 TAATAATAATTA-TTATAATATTTAATAATAATAC
67473003 TAATAATAATTATTATAATATTTAATAATAATAC
1 TAATAATAATTATTATAATATTTAATAATAATAC
*
67473037 -AAAAATAA
1 TAATAATAA
67473045 AAATATGTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 20 0.54
34 17 0.46
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.40
Consensus pattern (34 bp):
TAATAATAATTATTATAATATTTAATAATAATAC
Found at i:67474071 original size:6 final size:6
Alignment explanation
Indices: 67474060--67474097 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
67474050 ATATTCTGAA
*
67474060 TCTTTT TC-TTT TC-TTT TCTTTT TCCTTT TCTTTT TCTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTT
67474098 GCAATGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 10 0.34
6 19 0.66
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
TCTTTT
Found at i:67477988 original size:57 final size:57
Alignment explanation
Indices: 67477919--67478035 Score: 234
Period size: 57 Copynumber: 2.1 Consensus size: 57
67477909 CGAGGATGAA
67477919 GAATGAGATTTTTGGTCCGACAAGTTAAAGGTGGAGAAATGTGAAACGTGGAATGTG
1 GAATGAGATTTTTGGTCCGACAAGTTAAAGGTGGAGAAATGTGAAACGTGGAATGTG
67477976 GAATGAGATTTTTGGTCCGACAAGTTAAAGGTGGAGAAATGTGAAACGTGGAATGTG
1 GAATGAGATTTTTGGTCCGACAAGTTAAAGGTGGAGAAATGTGAAACGTGGAATGTG
67478033 GAA
1 GAA
67478036 CACCTCTCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.34, C:0.07, G:0.33, T:0.26
Consensus pattern (57 bp):
GAATGAGATTTTTGGTCCGACAAGTTAAAGGTGGAGAAATGTGAAACGTGGAATGTG
Found at i:67478057 original size:57 final size:57
Alignment explanation
Indices: 67477933--67478048 Score: 162
Period size: 57 Copynumber: 2.1 Consensus size: 57
67477923 GAGATTTTTG
* * * ***
67477933 GTCCGACAAGTTAAAGGTGGAGAAATGTGAAACGTGGAATGTGGAATGAGATTTTTG
1 GTCCGACAAGTTAAAGGTGGAGAAATGTGAAACGTGGAATGTGGAATCACATCTCAA
*
67477990 GTCCGACAAGTTAAAGGTGGAGAAATGTGAAACGTGGAATGTGGAA-CACCTCTCAA
1 GTCCGACAAGTTAAAGGTGGAGAAATGTGAAACGTGGAATGTGGAATCACATCTCAA
67478046 GTC
1 GTC
67478049 ATTTCAAGTC
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
56 6 0.12
57 46 0.88
ACGTcount: A:0.34, C:0.12, G:0.31, T:0.23
Consensus pattern (57 bp):
GTCCGACAAGTTAAAGGTGGAGAAATGTGAAACGTGGAATGTGGAATCACATCTCAA
Found at i:67485401 original size:36 final size:36
Alignment explanation
Indices: 67485358--67485429 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
67485348 CCAAATACGC
67485358 CACCTACCTCCACTACACCTATCCCATCACATTCAA
1 CACCTACCTCCACTACACCTATCCCATCACATTCAA
* *
67485394 CACCTACCTCCACTACACCTTTTCCATCACATTCAA
1 CACCTACCTCCACTACACCTATCCCATCACATTCAA
67485430 TGTCTCACTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.29, C:0.46, G:0.00, T:0.25
Consensus pattern (36 bp):
CACCTACCTCCACTACACCTATCCCATCACATTCAA
Found at i:67490333 original size:17 final size:17
Alignment explanation
Indices: 67490311--67490367 Score: 53
Period size: 19 Copynumber: 3.3 Consensus size: 17
67490301 TGACTTGTTC
*
67490311 AAAAATAGTTTTATCTT
1 AAAAATACTTTTATCTT
* *
67490328 AAAAATATATTTTTATCTA
1 -AAAA-ATACTTTTATCTT
*
67490347 AAAAATACTTTT-TTTT
1 AAAAATACTTTTATCTT
67490363 AAAAA
1 AAAAA
67490368 AACTAAGCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
16 7 0.21
17 7 0.21
18 8 0.24
19 11 0.33
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (17 bp):
AAAAATACTTTTATCTT
Found at i:67490358 original size:18 final size:17
Alignment explanation
Indices: 67490311--67490368 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 17
67490301 TGACTTGTTC
*
67490311 AAAAATAGTTTTATCTTA
1 AAAAATATTTTTATC-TA
67490329 AAAATATATTTTTATCTA
1 AAAA-ATATTTTTATCTA
*
67490347 AAAAATACTTTTT-TTTA
1 AAAAATA-TTTTTATCTA
67490364 AAAAA
1 AAAAA
67490369 ACTAAGCATA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
17 11 0.31
18 15 0.42
19 10 0.28
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (17 bp):
AAAAATATTTTTATCTA
Found at i:67490624 original size:13 final size:13
Alignment explanation
Indices: 67490608--67490632 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67490598 ATTATTTACA
67490608 AAAATTAAATAAT
1 AAAATTAAATAAT
67490621 AAAATTAAATAA
1 AAAATTAAATAA
67490633 ATTTCAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAATTAAATAAT
Found at i:67495338 original size:17 final size:17
Alignment explanation
Indices: 67495316--67495348 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
67495306 AAAAATATAA
*
67495316 TAATAATATAATAGTAG
1 TAATAACATAATAGTAG
67495333 TAATAACATAATAGTA
1 TAATAACATAATAGTA
67495349 TTAGAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (17 bp):
TAATAACATAATAGTAG
Found at i:67496225 original size:39 final size:38
Alignment explanation
Indices: 67496145--67496283 Score: 190
Period size: 39 Copynumber: 3.6 Consensus size: 38
67496135 CCCACGCTAC
* * *
67496145 TTTGTTTTATTATTAATCAAAA-TCACTCCCCATGCTAT
1 TTTGTTTTATTATTAATTAAAACT-ATTCCCCATACTAT
*
67496183 TTTGTTTTATTGTTAATTAAAACTATTTCCCCATACTAT
1 TTTGTTTTATTATTAATTAAAACTA-TTCCCCATACTAT
* *
67496222 TTTGTTTTATTGTTAATTAAAACTACTTCCTCATACTAT
1 TTTGTTTTATTATTAATTAAAACTA-TTCCCCATACTAT
67496261 TTTGTTTTATTATTAATTAAAAC
1 TTTGTTTTATTATTAATTAAAAC
67496284 CATACTTTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 21 0.23
39 71 0.77
ACGTcount: A:0.29, C:0.15, G:0.05, T:0.50
Consensus pattern (38 bp):
TTTGTTTTATTATTAATTAAAACTATTCCCCATACTAT
Found at i:67497491 original size:45 final size:45
Alignment explanation
Indices: 67497435--67497520 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
67497425 CGATATCTGC
* *
67497435 TATCTTTGATCTGCCCCCCGTCTACTACAGAGACGCCAAATCTAT
1 TATCTTCGATCTGCCCCCCGTCTAATACAGAGACGCCAAATCTAT
* *
67497480 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
1 TATCTTCGATCTGCCCCCCGTCTAATACAGAGACGCCAAAT
67497521 TTGCTTCTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (45 bp):
TATCTTCGATCTGCCCCCCGTCTAATACAGAGACGCCAAATCTAT
Found at i:67498011 original size:210 final size:210
Alignment explanation
Indices: 67497614--67498991 Score: 1927
Period size: 210 Copynumber: 6.6 Consensus size: 210
67497604 AAATCTGCTT
* * * * * * * *
67497614 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGTTTTAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACAC
* * * * ** * **
67497679 GTGAAAGCCAAATCAACTATGA--TTCGATTTGATCCTTGTAAGCATA-AG-GATGCCAA-A-C-
66 GTGAAAGCCAAATCAGCTAT-ATCTTCGATCTGCTCCCTG-CCGAATACAGAGA-GATAAGATCT
* * * **
67497737 --CATCTTGGATCCGCTTCAGCATAAACATCCGAAGGCGAGATCTGCTATGTGTCTG-CTCTCCA
128 GTCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCT-TCCA
*
67497799 TCAAAGT-GAAGATGCCAAA
192 TCAAAGTGGAA-ATGCCAGA
* * * * *
67497818 CTTTGATTCGTCCTCTGACAATACAGAGACGAAAAATCATCTTATATTTGCTTCATCGAAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACAC
* *
67497883 GTGAAAGCCAAATCAGCTATATCTTCGATCTGTTCCCTGCCGAATACAGAGAGATAAGATCTATC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
*
67497948 ATCTTGGATCTGCTTCTGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAA
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAA
67498013 AGTGGAAATGCCAGA
196 AGTGGAAATGCCAGA
67498028 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACAC
67498093 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
*
67498158 ATCTTGGATCTACTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAA
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAA
*
67498223 AGTAGAAATGCCAGA
196 AGTGGAAATGCCAGA
67498238 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC-ATAAACA
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGA-AAACA
* *
67498302 CATGAAAGCCAAATCAGCTATATCTTCGATTTGCTCCCTGCCGAATACAGAGAGATAAGATCTGT
65 CGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGT
*
67498367 CATATTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCA
130 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCA
67498432 AAGTGGAAATGCCAGA
195 AAGTGGAAATGCCAGA
* *
67498448 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTATATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACAC
*
67498513 GTGAAAGCCAAATCAGTTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
67498578 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAA
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAA
67498643 AGTGGAAATGCCAGA
196 AGTGGAAATGCCAGA
* * * * *
67498658 CTTCGATTTGTTCTCTGAAAATATAGAGACGACAAATCATCTTAGATTTGTTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACAC
* * * * * ** * *
67498723 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTG-TAAACACA-AG-GATGCAA-AAC--
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGAT--AAGATCTG
* * *
67498782 T-ATCTTGGATCCGCTTCAGCATAAACATCTGAAGGTTAGATCTGCTATGTGTCTG-CTCTCCAT
129 TCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCT-TCCAT
*
67498845 CAAAGT-GAAGATGCCAAA
193 CAAAGTGGAA-ATGCCAGA
* * * * *
67498863 CTTCGATTCGTTCTCTGACAATACAGATATGACAAATCATCTTAGATTTACTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACAC
* *
67498928 GTGAAAGCCAAATCAACTATATCTTCGATATGCT-CCTCGCCGAATACAGAGAGATAAGATCTGT
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCT-GCCGAATACAGAGAGATAAGATCTGT
67498992 GATGAAGGTC
Statistics
Matches: 1063, Mismatches: 87, Indels: 43
0.89 0.07 0.04
Matches are distributed among these distances:
203 1 0.00
204 82 0.08
205 174 0.16
206 11 0.01
207 8 0.01
208 7 0.01
209 9 0.01
210 766 0.72
211 5 0.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (210 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGAAAACAC
GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAA
AGTGGAAATGCCAGA
Found at i:67506971 original size:13 final size:15
Alignment explanation
Indices: 67506941--67506971 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67506931 TTCCAGATTT
67506941 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
67506956 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
67506971 T
1 T
67506972 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:67507057 original size:15 final size:14
Alignment explanation
Indices: 67507015--67507064 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
67507005 ATAACCTTGA
*
67507015 ATGCAAATGATGTG
1 ATGCAAATGATGAG
67507029 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
67507044 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
67507058 ATGCAAA
1 ATGCAAA
67507065 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:67507721 original size:14 final size:17
Alignment explanation
Indices: 67507690--67507726 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
67507680 ATTATAAAGG
67507690 ATATTATTAAATTAATT
1 ATATTATTAAATTAATT
67507707 ATATTA-TAAA-T-ATT
1 ATATTATTAAATTAATT
67507721 ATATTA
1 ATATTA
67507727 AGAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 9 0.45
15 1 0.05
16 4 0.20
17 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTATTAAATTAATT
Found at i:67507902 original size:14 final size:14
Alignment explanation
Indices: 67507876--67507926 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
67507866 GAAAACAAAA
67507876 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
67507890 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* * *
67507904 TAAGTTAAAATAAAA
1 GAA-ATAAAATAAAG
67507919 G-AATAAAA
1 GAAATAAAA
67507927 GAAACAAAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 5 0.17
14 16 0.55
15 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:67507937 original size:17 final size:16
Alignment explanation
Indices: 67507915--67507948 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
67507905 AAGTTAAAAT
67507915 AAAAGAATAAAAGAAAC
1 AAAAGAA-AAAAGAAAC
*
67507932 AAAAGAAGAAAGAAAC
1 AAAAGAAAAAAGAAAC
67507948 A
1 A
67507949 GAATAGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAC
Found at i:67513396 original size:18 final size:20
Alignment explanation
Indices: 67513362--67513400 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
67513352 AGGTAAATAC
67513362 ATAATATATACATATTAGAA
1 ATAATATATACATATTAGAA
67513382 ATAAT-TATA-ATATTAGAA
1 ATAATATATACATATTAGAA
67513400 A
1 A
67513401 CAACTATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.53
19 4 0.21
20 5 0.26
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (20 bp):
ATAATATATACATATTAGAA
Found at i:67513603 original size:24 final size:26
Alignment explanation
Indices: 67513556--67513604 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
67513546 ATTAAAAGAT
*
67513556 ATATATATATATAAAATGTATACATA
1 ATATATATATATAAAATATATACATA
*
67513582 ATATA-ATAT-TAAAATATTTACAT
1 ATATATATATATAAAATATATACAT
67513605 GGTATATACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.57
25 4 0.19
26 5 0.24
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (26 bp):
ATATATATATATAAAATATATACATA
Found at i:67514201 original size:39 final size:39
Alignment explanation
Indices: 67514107--67514255 Score: 171
Period size: 39 Copynumber: 3.9 Consensus size: 39
67514097 ATTCCACTCC
* * * *
67514107 CCCCATGCTACTTTGTTTTATTA-TTAATCAAAACCAC-T
1 CCCCATACTATTTTGTTTTA-TAGTTAATTAAAACTACTT
* * *
67514145 -CCCTTGCTATTTTGTTTTATAGTTAATTAAAACTATTT
1 CCCCATACTATTTTGTTTTATAGTTAATTAAAACTACTT
*
67514183 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTT
1 CCCCATACTATTTTGTTTTATAGTTAATTAAAACTACTT
*
67514222 CCTCATACTATTTTGTTTTATTAG-TAATTAAAAC
1 CCCCATACTATTTTGTTTTA-TAGTTAATTAAAAC
67514256 CATACTTTAT
Statistics
Matches: 96, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
36 2 0.02
37 28 0.29
38 1 0.01
39 63 0.66
40 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (39 bp):
CCCCATACTATTTTGTTTTATAGTTAATTAAAACTACTT
Found at i:67515924 original size:23 final size:23
Alignment explanation
Indices: 67515880--67515955 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 23
67515870 AATATATTTT
* *
67515880 TTATTTAATAATTTTTATTTTAA
1 TTATTTAATAATTTTAAATTTAA
*
67515903 TTATTATAA-AATTTTAAATTTAT
1 TTATT-TAATAATTTTAAATTTAA
* *** *
67515926 TTTTTTAATAAACATAAATTTCA
1 TTATTTAATAATTTTAAATTTAA
67515949 TTATTTA
1 TTATTTA
67515956 TTAGATATAG
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
22 3 0.07
23 35 0.85
24 3 0.07
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (23 bp):
TTATTTAATAATTTTAAATTTAA
Found at i:67517071 original size:33 final size:32
Alignment explanation
Indices: 67517034--67517098 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 32
67517024 GTAAGTTTTT
* *
67517034 TAATTAACATAAAAAGTTGTTACAAAATTTGTC
1 TAATTAACATAAAAACTGGTTAC-AAATTTGTC
67517067 TAATTAACATAAAAACTGGTTACAAATTTGTC
1 TAATTAACATAAAAACTGGTTACAAATTTGTC
67517099 CAGAGAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 9 0.30
33 21 0.70
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.35
Consensus pattern (32 bp):
TAATTAACATAAAAACTGGTTACAAATTTGTC
Found at i:67518199 original size:33 final size:34
Alignment explanation
Indices: 67518104--67518200 Score: 87
Period size: 33 Copynumber: 2.9 Consensus size: 34
67518094 TTAATATTTT
*
67518104 AATATATAAATTTTAAATTTTAAATATTT--TTAAGC
1 AATATATAAA--TTATATTTTAAATATTTAATTAA-C
* *
67518139 AATAAATATTAATTAT-TTATAAA-ATTTAATTAA-
1 AAT--ATATAAATTATATTTTAAATATTTAATTAAC
67518172 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
67518201 ATATAACCTT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 13 0.25
34 6 0.12
35 10 0.20
37 6 0.12
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (34 bp):
AATATATAAATTATATTTTAAATATTTAATTAAC
Found at i:67522624 original size:31 final size:31
Alignment explanation
Indices: 67522573--67522647 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
67522563 CGAAAAAAAT
67522573 AAAAATGA-TAAAA-TTTATAGAAAAATATTA
1 AAAAAT-ATTAAAATTTTATAGAAAAATATTA
*** *
67522603 AAAAATATTAAAATTTTATAGAATTTTTTTA
1 AAAAATATTAAAATTTTATAGAAAAATATTA
67522634 AAAAATATTAAAAT
1 AAAAATATTAAAAT
67522648 AGAAAAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
29 1 0.03
30 11 0.28
31 27 0.69
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (31 bp):
AAAAATATTAAAATTTTATAGAAAAATATTA
Found at i:67526774 original size:19 final size:18
Alignment explanation
Indices: 67526750--67526802 Score: 52
Period size: 21 Copynumber: 2.7 Consensus size: 18
67526740 TAATATTTAA
*
67526750 TTAAAATTAAAAATTATAG
1 TTAAAATTAAAAAATA-AG
*
67526769 TTAAAATATATAAAAATAAT
1 TTAAAAT-TA-AAAAATAAG
67526789 TATAAAATTAAAAA
1 T-TAAAATTAAAAA
67526803 GAATGGTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 11 0.38
20 6 0.21
21 12 0.41
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
TTAAAATTAAAAAATAAG
Found at i:67533303 original size:3 final size:3
Alignment explanation
Indices: 67533295--67533342 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
67533285 TTTTATTACT
67533295 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
67533343 AAAGCTTGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:67533681 original size:21 final size:22
Alignment explanation
Indices: 67533656--67533731 Score: 61
Period size: 21 Copynumber: 3.5 Consensus size: 22
67533646 AATTCATTAA
67533656 ATTTATTAAAATATTTATATTT
1 ATTTATTAAAATATTTATATTT
* *
67533678 -TTTAATATAATATTT-T-TTT
1 ATTTATTAAAATATTTATATTT
* *
67533697 ATTATTTTAAAATA-TTATATAT
1 ATT-TATTAAAATATTTATATTT
67533719 ATTTCGATTAAAA
1 ATTT--ATTAAAA
67533732 GTTTATTTAC
Statistics
Matches: 41, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
19 3 0.07
20 5 0.12
21 22 0.54
22 5 0.12
23 6 0.15
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (22 bp):
ATTTATTAAAATATTTATATTT
Found at i:67537564 original size:72 final size:72
Alignment explanation
Indices: 67537422--67537660 Score: 374
Period size: 72 Copynumber: 3.3 Consensus size: 72
67537412 AAAATCATAT
** * *
67537422 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTAGAACATAAATTTAATCTCCAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
67537485 AATCAAAC
65 AACCAAAC
* *
67537493 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAAAATATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
67537558 ACCAAAC
66 ACCAAAC
*
67537565 ATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
67537630 ACCAAAC
66 ACCAAAC
*
67537637 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
67537661 TTTAGCATTG
Statistics
Matches: 154, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
71 26 0.17
72 128 0.83
ACGTcount: A:0.55, C:0.15, G:0.05, T:0.25
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:67538175 original size:13 final size:13
Alignment explanation
Indices: 67538157--67538182 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67538147 GGTTTTTGTT
67538157 TTATCTAAACTAA
1 TTATCTAAACTAA
67538170 TTATCTAAACTAA
1 TTATCTAAACTAA
67538183 GAATTCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:67539396 original size:18 final size:18
Alignment explanation
Indices: 67539373--67539420 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
67539363 TCCATCAATG
*
67539373 TGAACATCATTTGAAATC
1 TGAACATCATTTAAAATC
*
67539391 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATC
67539409 TGAACATCATTT
1 TGAACATCATTT
67539421 CTCACATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTAAAATC
Found at i:67543843 original size:3 final size:3
Alignment explanation
Indices: 67543835--67543910 Score: 68
Period size: 3 Copynumber: 25.0 Consensus size: 3
67543825 ATTTTCGGCA
* *
67543835 AAG AAG AAG AAG AAA AAG AGAG AAG AAG GA- AAG AAG -AG AAG AAAG
1 AAG AAG AAG AAG AAG AAG A-AG AAG AAG AAG AAG AAG AAG AAG -AAG
*
67543880 AAAG AAG -AG AAG AAG AAG AAAG AAA AAG AAG
1 -AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG
67543911 GAGAGGCGGA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
2 5 0.08
3 43 0.70
4 13 0.21
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:67543870 original size:24 final size:24
Alignment explanation
Indices: 67543839--67543914 Score: 86
Period size: 24 Copynumber: 3.1 Consensus size: 24
67543829 TCGGCAAAGA
67543839 AGAAGAAGAAAAAGAGAGAAGAAGG
1 AGAAGAAGAAAAAGAGA-AAGAAGG
67543864 A-AAGAAGAGAAGAA-AGAAAGAA-G
1 AGAAGAAGA-AA-AAGAGAAAGAAGG
*
67543887 AGAAGAAGAAGAAAGAAAAAGAAGG
1 AGAAGAAGAA-AAAGAGAAAGAAGG
67543912 AGA
1 AGA
67543915 GGCGGAGAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
23 5 0.11
24 27 0.61
25 10 0.23
26 2 0.05
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (24 bp):
AGAAGAAGAAAAAGAGAAAGAAGG
Found at i:67543879 original size:27 final size:27
Alignment explanation
Indices: 67543835--67543904 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 27
67543825 ATTTTCGGCA
*
67543835 AAGAAGAAGAAGAA-AAAGAGAGAAGA-
1 AAGAAGAAG-AGAAGAAAGAAAGAAGAG
*
67543861 AGGAAAGAAGAGAAGAAAGAAAGAAGAG
1 AAG-AAGAAGAGAAGAAAGAAAGAAGAG
67543889 AAGAAGAAGA-AAGAAA
1 AAGAAGAAGAGAAGAAA
67543905 AAGAAGGAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
26 12 0.32
27 24 0.63
28 2 0.05
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (27 bp):
AAGAAGAAGAGAAGAAAGAAAGAAGAG
Found at i:67543908 original size:16 final size:17
Alignment explanation
Indices: 67543838--67543910 Score: 82
Period size: 16 Copynumber: 4.4 Consensus size: 17
67543828 TTCGGCAAAG
67543838 AAGAAGAAGAAA-AAGA
1 AAGAAGAAGAAAGAAGA
*
67543854 GAGAAGAAGGAAAGAAG-
1 AAGAAGAA-GAAAGAAGA
67543871 -AGAAGAAAGAAAGAAGA
1 AAGAAG-AAGAAAGAAGA
67543888 GAAGAAGAAGAAAGAA-A
1 -AAGAAGAAGAAAGAAGA
67543905 AAGAAG
1 AAGAAG
67543911 GAGAGGCGGA
Statistics
Matches: 50, Mismatches: 1, Indels: 12
0.79 0.02 0.19
Matches are distributed among these distances:
16 26 0.52
17 7 0.14
18 12 0.24
19 5 0.10
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (17 bp):
AAGAAGAAGAAAGAAGA
Found at i:67543915 original size:27 final size:27
Alignment explanation
Indices: 67543835--67543915 Score: 80
Period size: 27 Copynumber: 3.0 Consensus size: 27
67543825 ATTTTCGGCA
67543835 AAGAAGAAG-AAGAAAAAG-A-GAGAAG
1 AAGAAGAAGAAAGAAAAAGAAGGAG-AG
* *
67543860 AAGGA-AAGAAGAGAAGAAAGAAAGAAGAG
1 AAGAAGAAGAA-AGAA-AAAG-AAGGAGAG
67543889 AAGAAGAAGAAAGAAAAAGAAGGAGAG
1 AAGAAGAAGAAAGAAAAAGAAGGAGAG
67543916 GCGGAGAAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
24 3 0.07
25 5 0.11
26 4 0.09
27 11 0.24
28 4 0.09
29 11 0.24
30 7 0.16
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (27 bp):
AAGAAGAAGAAAGAAAAAGAAGGAGAG
Found at i:67543996 original size:17 final size:18
Alignment explanation
Indices: 67543952--67543998 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
67543942 GAAGAAAAAA
*
67543952 GAAAAAGAAAATGAGAAG
1 GAAAAAGAAGATGAGAAG
*
67543970 GAGAAGAAGAAGA-GGGAAG
1 GA-AA-AAGAAGATGAGAAG
67543989 GAAAAAGAAG
1 GAAAAAGAAG
67543999 GAAAGAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 6 0.24
18 4 0.16
19 9 0.36
20 6 0.24
ACGTcount: A:0.62, C:0.00, G:0.36, T:0.02
Consensus pattern (18 bp):
GAAAAAGAAGATGAGAAG
Found at i:67544001 original size:14 final size:14
Alignment explanation
Indices: 67543947--67544009 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
67543937 TGAGAGAAGA
67543947 AAAAAGAA--AAAG
1 AAAAAGAAGGAAAG
67543959 AAAATGAGAAGGAGAAG
1 AAAA--AGAAGGA-AAG
* * *
67543976 AAGAAGAGGGAAGG
1 AAAAAGAAGGAAAG
67543990 AAAAAGAAGGAAAG
1 AAAAAGAAGGAAAG
67544004 AAAAAG
1 AAAAAG
67544010 GTAATTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
12 4 0.10
14 23 0.57
15 6 0.15
16 1 0.03
17 6 0.15
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.02
Consensus pattern (14 bp):
AAAAAGAAGGAAAG
Found at i:67544618 original size:136 final size:133
Alignment explanation
Indices: 67544465--67544721 Score: 320
Period size: 136 Copynumber: 1.9 Consensus size: 133
67544455 AATAATATAA
** * * *
67544465 AAAATAAAATATGAAAATAGTATAATTAAAAAAATAAAATCCGAAAATAAAAAAATACGAACAAG
1 AAAATAAAATACCAAAATAATATAATTAAAAAAATAAAATACG-----AAAAAAATACGAACAAA
* **
67544530 GTGCCAAAGTCA-GGTTACTTATTAAATTAATATAAAAAA-ACTTAAATAATACATTTGAAAGAT
61 GTGCCAAAATCAGGGTTACTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAAGAT
67544593 TTTATGCT
126 TTTATGCT
* * * * * *
67544601 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATATGAATAAAGTGCT
1 AAAATAAAATACCAAAATAATATAATTAAAAAAATAAAATACGAAAAAAATACGAACAAAGTGCC
*
67544666 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAA
66 AAAATCAGGGTTACTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAA
67544722 GCATTATGTA
Statistics
Matches: 104, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
131 24 0.23
132 24 0.23
133 20 0.19
136 36 0.35
ACGTcount: A:0.57, C:0.07, G:0.08, T:0.28
Consensus pattern (133 bp):
AAAATAAAATACCAAAATAATATAATTAAAAAAATAAAATACGAAAAAAATACGAACAAAGTGCC
AAAATCAGGGTTACTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAAGATTTTAT
GCT
Found at i:67544772 original size:146 final size:145
Alignment explanation
Indices: 67544601--67545664 Score: 1146
Period size: 146 Copynumber: 7.1 Consensus size: 145
67544591 ATTTTATGCT
* *
67544601 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATATGAATAAAGTGCT
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
*
67544666 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAGCATTATGT
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGT
67544731 ACTAAAATAATATAA
131 ACTAAAATAATATAA
* *
67544746 AGAAATAAAATATGAAAATAATATATTTTAAAAAATAATATACGAAAATAAAAAAATTACGAAGA
1 A-AAATAAAATACGAAAATAATATATTTTAAAAAATAATATACG-----AAAAAAA-TACGAATA
* * * * * *
67544811 AAGT-ATCAAAATCAGGGTTATTTAGTAAAAAACCCCTTAACATATAGAAACAGTTAATTAATAC
59 AAGTGCT-AAAATCAGGGTTATTTA-TTAAAAA------AATATA-AAAAACACTTAAATAATAC
*** * * *
67544875 ATTTGAATTTTTTTTTGCTAAAATAATATAA
115 ATTTGAAACATTATGTACTAAAATAATATAA
*
67544906 AAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
* * *
67544971 AAAATCAGGGATATTTATTGAAAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGT
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGT
67545036 ACTAAAATAATATGAA
131 ACTAAAATAATAT-AA
* * * * *
67545052 GAAATAAAATAGGAAAATAATATATTTTAAAAAATAAGATACG-AAGAAATACGAAGAAAGTG-T
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
** *
67545115 CAAAATCAGGGTTATTTATTAAATTAGTATAAAAAAAACACTTACATAATATACCTAATACATTT
66 -AAAATCAGGGTTATTTATTAAA--AAAATATAAAAAACAC-T---T-A-A-A--TAATACATTT
* * *
67545180 GAAACATTTTTTGCTAAAATAATATAA
119 GAAACATTATGTACTAAAATAATATAA
*
67545207 AAAATAAAATAGGAAAATAATATATTTTAAAAAATAATATACG-AAAAAATACGAATAAAGTGCT
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
* *
67545271 AAAATCATGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAAACATAATG
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTG-AAACATTATG
67545336 TACTAAAATAATATAA
130 TACTAAAATAATATAA
* * *
67545352 AGAAATAAAATACGAAAATAATATA-TTTAAAAAA-AAGATACG-AAAAAATACAAATAAAATGC
1 A-AAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGC
* * * *
67545414 TAAAATCA-AGTTATTTATTAAAAAAATATTAAAAATACTTAAATAATACATTTAAAACATTATG
65 TAAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATG
*
67545478 TACTAAAATAAGGGTTTTAA
130 TACTAAAATAA----TATAA
* *
67545498 AATAA-AATAATACGAAAGTAATATATTTTAAAAAATAAGATACGAAAATAAAAAATACGAA-AA
1 AA-AATAA-AATACGAAAATAATATATTTTAAAAAATAATATACG---A-AAAAAATACGAATAA
* ** * *
67545561 AGTG-TCAAAATCAGTGTTATTTATTAAATTAATATAAAAAAATACTTACATAATACATTT-AAA
60 AGTGCT-AAAATCAGGGTTATTTATTAAAAAAATAT-AAAAAACACTTAAATAATACATTTGAAA
* * * * *
67545624 AATTTTTTGCTAAAAT-ATTTAA
123 CATTATGTACTAAAATAATATAA
*
67545646 AAAATAATATACGAAAATA
1 AAAATAAAATACGAAAATA
67545665 TTTTACTTAT
Statistics
Matches: 786, Mismatches: 83, Indels: 98
0.81 0.09 0.10
Matches are distributed among these distances:
142 20 0.03
143 42 0.05
144 45 0.06
145 111 0.14
146 133 0.17
147 34 0.04
148 19 0.02
149 1 0.00
151 10 0.01
152 47 0.06
153 91 0.12
154 31 0.04
155 81 0.10
156 33 0.04
159 46 0.06
160 42 0.05
ACGTcount: A:0.56, C:0.07, G:0.08, T:0.30
Consensus pattern (145 bp):
AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGT
ACTAAAATAATATAA
Found at i:67544909 original size:12 final size:13
Alignment explanation
Indices: 67544894--67544929 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
67544884 TTTTTTTGCT
67544894 AAAATAATATAA-
1 AAAATAATATAAG
*
67544906 AAAATAAAATAAG
1 AAAATAATATAAG
67544919 AAAATAATATA
1 AAAATAATATA
67544930 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (13 bp):
AAAATAATATAAG
Found at i:67545339 original size:301 final size:297
Alignment explanation
Indices: 67544601--67545664 Score: 1200
Period size: 305 Copynumber: 3.6 Consensus size: 297
67544591 ATTTTATGCT
** *
67544601 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATATGAATAAAGTGCT
1 AAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
*
67544666 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAGCATTATGT
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGT
* *
67544731 ACTAAAATAATATAAAGAAATAAAATATGAAAATAATATATTTTAAAAAATAATATACGAAAATA
131 ACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACG------
* * ***** *
67544796 AAAAAATTACGAAGAAAGTATCAAAATCAGGGTTATTTAGTAAAAAACCCCTTAACATATAGAAA
190 AAAAAA-TACGAAGAAAGTGTCAAAATCAGGGTTATTTATTAAAAAACAAAAAAACATATACAAA
* ***
67544861 CAGTTAATTAATACATTTGAATTTTTTTTTGCTAAAATAATATAA
254 CAG-TAACTAATACATTTGAAACATTTTTTGCTAAAATAATATAA
67544906 AAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
1 AAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
* * *
67544971 AAAATCAGGGATATTTATTGAAAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGT
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGT
* * *
67545036 ACTAAAATAATATGAAGAAATAAAATAGGAAAATAATATATTTTAAAAAATAAGATACGAAGAAA
131 ACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAAAA
67545101 TACGAAGAAAGTGTCAAAATCAGGGTTATTTATTAAATTAGTATA-AAAAAAACACT-TACATAA
196 TACGAAGAAAGTGTCAAAATCAGGGTTATTTATTAAA--A--A-ACAAAAAAACA-TATACA-AA
* *
67545164 TA-TACCTAATACATTTGAAACATTTTTTGCTAAAATAATATAA
254 CAGTAACTAATACATTTGAAACATTTTTTGCTAAAATAATATAA
*
67545207 AAAATAAAATAGGAAAATAATATATTTTAAAAAATAATATACG-AAAAAATACGAATAAAGTGCT
1 AAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
* *
67545271 AAAATCATGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAAACATAATG
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTG-AAACATTATG
67545336 TACTAAAATAATATAAAGAAATAAAATACGAAAATAATATA-TTTAAAAAA-AAGATACGAAAAA
130 TACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAAA
* * * * ** *
67545399 ATACAAATAAAATG-CTAAAATCA-AGTTATTTATTAAAAAA-ATATTAAA-A-AT----AC-TT
195 ATACGAAGAAAGTGTC-AAAATCAGGGTTATTTATTAAAAAACA-AAAAAACATATACAAACAGT
* * * * * *
67545454 AAATAATACATTTAAAACATTATGTACTAAAATAAGGGTTTTAA
258 AACTAATACATTTGAAACATTTTTTGCTAAAATAA----TATAA
* * *
67545498 AATAA-AATAATACGAAAGTAATATATTTTAAAAAATAAGATACGAAAATAAAAAATACGAA-AA
1 AA-AATAA-AATAAGAAAATAATATATTTTAAAAAATAATATACG---A-AAAAAATACGAATAA
* ** * *
67545561 AGTG-TCAAAATCAGTGTTATTTATTAAATTAATATAAAAAAATACTTACATAATACATTT-AAA
60 AGTGCT-AAAATCAGGGTTATTTATTAAAAAAATAT-AAAAAACACTTAAATAATACATTTGAAA
* * * * * *
67545624 AATTTTTTGCTAAAAT-ATTTAAA-AAATAATATACGAAAATA
123 CATTATGTACTAAAATAATATAAAGAAATAAAATACGAAAATA
67545665 TTTTACTTAT
Statistics
Matches: 670, Mismatches: 64, Indels: 62
0.84 0.08 0.08
Matches are distributed among these distances:
287 31 0.05
291 8 0.01
292 36 0.05
293 20 0.03
294 11 0.02
295 15 0.02
296 32 0.05
297 34 0.05
298 49 0.07
299 35 0.05
300 81 0.12
301 126 0.19
302 8 0.01
303 5 0.01
305 179 0.27
ACGTcount: A:0.56, C:0.07, G:0.08, T:0.30
Consensus pattern (297 bp):
AAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
AAAATCAGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTGAAACATTATGT
ACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAAAA
TACGAAGAAAGTGTCAAAATCAGGGTTATTTATTAAAAAACAAAAAAACATATACAAACAGTAAC
TAATACATTTGAAACATTTTTTGCTAAAATAATATAA
Found at i:67545387 original size:26 final size:28
Alignment explanation
Indices: 67545340--67545410 Score: 67
Period size: 27 Copynumber: 2.6 Consensus size: 28
67545330 ATAATGTACT
*
67545340 AAAATAATATAAAG-AAATAAA-ATACG
1 AAAATAATATAAAGAAAAAAAAGATACG
***
67545366 AAAATAATATATTTAAAAAAAAGATACG
1 AAAATAATATAAAGAAAAAAAAGATACG
* *
67545394 AAAA-AATACAAATAAAA
1 AAAATAATATAAAGAAAA
67545411 TGCTAAAATC
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
26 11 0.31
27 16 0.44
28 9 0.25
ACGTcount: A:0.70, C:0.04, G:0.06, T:0.20
Consensus pattern (28 bp):
AAAATAATATAAAGAAAAAAAAGATACG
Found at i:67547660 original size:72 final size:72
Alignment explanation
Indices: 67547535--67547674 Score: 208
Period size: 72 Copynumber: 1.9 Consensus size: 72
67547525 AGTCTGAGCG
* * *
67547535 ATCGCATTCACATTTGACTGATACTTCTTATCATCTGGATTTGGCAGGCAATGACTATGTCCCGG
1 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATGTCCCGG
67547600 GCTTGTC
66 GCTTGTC
* * * * *
67547607 ATCGCATTCACATTCGGCTGATACTTCTTATCATCCGGATTTTGCGGGTAATGACAATTTCCCGG
1 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATGTCCCGG
67547672 GCT
66 GCT
67547675 CATCGGGGGG
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 60 1.00
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (72 bp):
ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATGTCCCGG
GCTTGTC
Found at i:67551689 original size:35 final size:35
Alignment explanation
Indices: 67551650--67551735 Score: 111
Period size: 35 Copynumber: 2.5 Consensus size: 35
67551640 GTTTAGGTTT
* **
67551650 TTTTTTAC-AATAATAATAACTAACAATAATTATAG
1 TTTTTTACTAACAATAATAAC-AACAATAACAATAG
* *
67551685 TTTTTTACTAACAATAATAACAATAATAACAATAT
1 TTTTTTACTAACAATAATAACAACAATAACAATAG
67551720 TTTTTTACTAACAATA
1 TTTTTTACTAACAATA
67551736 TTAATAACTG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
35 34 0.76
36 11 0.24
ACGTcount: A:0.48, C:0.10, G:0.01, T:0.41
Consensus pattern (35 bp):
TTTTTTACTAACAATAATAACAACAATAACAATAG
Found at i:67551707 original size:9 final size:9
Alignment explanation
Indices: 67551693--67551718 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
67551683 AGTTTTTTAC
67551693 TAACAATAA
1 TAACAATAA
67551702 TAACAATAA
1 TAACAATAA
67551711 TAACAATA
1 TAACAATA
67551719 TTTTTTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.23
Consensus pattern (9 bp):
TAACAATAA
Found at i:67551864 original size:15 final size:16
Alignment explanation
Indices: 67551836--67551903 Score: 50
Period size: 15 Copynumber: 4.1 Consensus size: 16
67551826 AAATTATACA
*
67551836 TTCTTTTTTCCTTCTCC
1 TTCTATTTT-CTTCTCC
67551853 TTCT-TTTTCTTCCTTCTC
1 TTCTATTTTCTT-C-TC-C
**
67551871 TTCTCCTTTCTT-TCC
1 TTCTATTTTCTTCTCC
*
67551886 TTTTATTTTCTTCTCC
1 TTCTATTTTCTTCTCC
67551902 TT
1 TT
67551904 GCTACTGAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
15 13 0.31
16 12 0.29
17 6 0.14
18 5 0.12
19 6 0.14
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.66
Consensus pattern (16 bp):
TTCTATTTTCTTCTCC
Found at i:67551867 original size:19 final size:17
Alignment explanation
Indices: 67551839--67551874 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 17
67551829 TTATACATTC
67551839 TTTTTTCCTTCTCCTTCT
1 TTTTTTCCTTCT-CTTCT
67551857 TTTTCTTCCTTCTCTTCT
1 TTTT-TTCCTTCTCTTCT
67551875 CCTTTCTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTTTCCTTCTCTTCT
Found at i:67551880 original size:19 final size:19
Alignment explanation
Indices: 67551837--67551887 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
67551827 AATTATACAT
*
67551837 TCTTTTTTCCTTCTCCTTC
1 TCTTTCTTCCTTCTCCTTC
*
67551856 TTTTTCTTCCTTCT-CTTC
1 TCTTTCTTCCTTCTCCTTC
67551874 TCCTTTCTTTCCTT
1 T-CTTTC-TTCCTT
67551888 TTATTTTCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 5 0.19
19 16 0.59
20 6 0.22
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (19 bp):
TCTTTCTTCCTTCTCCTTC
Found at i:67552085 original size:19 final size:19
Alignment explanation
Indices: 67552044--67552088 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
67552034 TGTCTAATAT
* **
67552044 TTTTTTTTCGTTTTCAGCT
1 TTTTTTTTCATTTTCAGAG
67552063 TTTTTTTTCATTTTCAGAG
1 TTTTTTTTCATTTTCAGAG
67552082 TTTTTTT
1 TTTTTTT
67552089 ACTGTGCGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.09, C:0.11, G:0.09, T:0.71
Consensus pattern (19 bp):
TTTTTTTTCATTTTCAGAG
Found at i:67552088 original size:20 final size:19
Alignment explanation
Indices: 67552043--67552079 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
67552033 ATGTCTAATA
*
67552043 TTTTTTTTTCGTTTTCAGC
1 TTTTTTTTTCATTTTCAGC
67552062 TTTTTTTTTCATTTTCAG
1 TTTTTTTTTCATTTTCAG
67552080 AGTTTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.14, G:0.08, T:0.70
Consensus pattern (19 bp):
TTTTTTTTTCATTTTCAGC
Found at i:67557420 original size:39 final size:37
Alignment explanation
Indices: 67557353--67557445 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
67557343 ACCAGAATGG
* *
67557353 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
67557392 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
67557429 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
67557446 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:67557806 original size:3 final size:3
Alignment explanation
Indices: 67557800--67557828 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
67557790 TCCCATCATC
67557800 ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
67557829 CTTACCTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:67559132 original size:16 final size:16
Alignment explanation
Indices: 67559113--67559147 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
67559103 TTCTTTGTTC
67559113 TTTCTATTCTGTTTCT
1 TTTCTATTCTGTTTCT
* *
67559129 TTTCTGTTTTGTTTCT
1 TTTCTATTCTGTTTCT
67559145 TTT
1 TTT
67559148 ATATATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.14, G:0.09, T:0.74
Consensus pattern (16 bp):
TTTCTATTCTGTTTCT
Found at i:67559173 original size:17 final size:17
Alignment explanation
Indices: 67559151--67559228 Score: 53
Period size: 15 Copynumber: 4.9 Consensus size: 17
67559141 TTCTTTTATA
67559151 TATAATAATATAATATT
1 TATAATAATATAATATT
* *
67559168 TATAAT-ATA-ATTAAT
1 TATAATAATATAATATT
*
67559183 T-TAATAATAT-A-CTT
1 TATAATAATATAATATT
*
67559197 TATAATTAATTTATATATT
1 TATAA-TAATATA-ATATT
67559216 TAT-ATAA-ATAATA
1 TATAATAATATAATA
67559229 ATATAAAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
14 6 0.13
15 14 0.30
16 10 0.22
17 9 0.20
18 2 0.04
19 5 0.11
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (17 bp):
TATAATAATATAATATT
Found at i:67559174 original size:14 final size:17
Alignment explanation
Indices: 67559153--67559193 Score: 61
Period size: 14 Copynumber: 2.6 Consensus size: 17
67559143 CTTTTATATA
67559153 TAATAATATAA-T-ATT
1 TAATAATATAATTAATT
67559168 T-ATAATATAATTAATT
1 TAATAATATAATTAATT
67559184 TAATAATATA
1 TAATAATATA
67559194 CTTTATAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.39
15 2 0.09
16 4 0.17
17 8 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TAATAATATAATTAATT
Found at i:67559211 original size:11 final size:11
Alignment explanation
Indices: 67559173--67559211 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
67559163 ATATTTATAA
67559173 TATAATTAATT
1 TATAATTAATT
*
67559184 TAATAATATACTT
1 T-ATAAT-TAATT
67559197 TATAATTAATT
1 TATAATTAATT
67559208 TATA
1 TATA
67559212 TATTTATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 9 0.38
12 10 0.42
13 5 0.21
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (11 bp):
TATAATTAATT
Found at i:67559230 original size:24 final size:24
Alignment explanation
Indices: 67559147--67559227 Score: 87
Period size: 24 Copynumber: 3.4 Consensus size: 24
67559137 TTGTTTCTTT
*
67559147 TATATATAA-TAATATAATATTTA
1 TATATATAATTAATTTAATATTTA
*
67559170 TA-ATATAATTAATTTAATA-ATA
1 TATATATAATTAATTTAATATTTA
*
67559192 TACTTTATAATTAATTTATATATTTA
1 TA-TATATAATTAATTTA-ATATTTA
*
67559218 TATAAATAAT
1 TATATATAAT
67559228 AATATAAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
22 10 0.21
23 11 0.23
24 13 0.28
25 9 0.19
26 4 0.09
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (24 bp):
TATATATAATTAATTTAATATTTA
Found at i:67564169 original size:21 final size:21
Alignment explanation
Indices: 67564127--67564169 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
67564117 TTCACTATAC
*
67564127 ATTCTTTCATCAGTATCATTT
1 ATTCTTTCATCAGCATCATTT
*
67564148 ATTCTTTCTTCAGACATC-TTT
1 ATTCTTTCATCAG-CATCATTT
67564169 A
1 A
67564170 ATCTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTCTTTCATCAGCATCATTT
Found at i:67565280 original size:39 final size:37
Alignment explanation
Indices: 67565213--67565305 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
67565203 ACCAGAATGG
* *
67565213 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
67565252 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
67565289 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
67565306 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:67565668 original size:3 final size:3
Alignment explanation
Indices: 67565660--67565686 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
67565650 ATTCCCACTC
67565660 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
67565687 CTTACCTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:67566991 original size:16 final size:16
Alignment explanation
Indices: 67566972--67567006 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
67566962 TTCTTTGTTC
67566972 TTTCTATTCTGTTTCT
1 TTTCTATTCTGTTTCT
* *
67566988 TTTCTGTTTTGTTTCT
1 TTTCTATTCTGTTTCT
67567004 TTT
1 TTT
67567007 ATATATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.14, G:0.09, T:0.74
Consensus pattern (16 bp):
TTTCTATTCTGTTTCT
Found at i:67567032 original size:17 final size:17
Alignment explanation
Indices: 67567010--67567087 Score: 53
Period size: 15 Copynumber: 4.9 Consensus size: 17
67567000 TTCTTTTATA
67567010 TATAATAATATAATATT
1 TATAATAATATAATATT
* *
67567027 TATAAT-ATA-ATTAAT
1 TATAATAATATAATATT
*
67567042 T-TAATAATAT-A-CTT
1 TATAATAATATAATATT
*
67567056 TATAATTAATTTATATATT
1 TATAA-TAATATA-ATATT
67567075 TAT-ATAA-ATAATA
1 TATAATAATATAATA
67567088 ATATAAAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
14 6 0.13
15 14 0.30
16 10 0.22
17 9 0.20
18 2 0.04
19 5 0.11
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (17 bp):
TATAATAATATAATATT
Found at i:67567033 original size:14 final size:17
Alignment explanation
Indices: 67567012--67567052 Score: 61
Period size: 14 Copynumber: 2.6 Consensus size: 17
67567002 CTTTTATATA
67567012 TAATAATATAA-T-ATT
1 TAATAATATAATTAATT
67567027 T-ATAATATAATTAATT
1 TAATAATATAATTAATT
67567043 TAATAATATA
1 TAATAATATA
67567053 CTTTATAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.39
15 2 0.09
16 4 0.17
17 8 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TAATAATATAATTAATT
Found at i:67567070 original size:11 final size:11
Alignment explanation
Indices: 67567032--67567070 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
67567022 ATATTTATAA
67567032 TATAATTAATT
1 TATAATTAATT
*
67567043 TAATAATATACTT
1 T-ATAAT-TAATT
67567056 TATAATTAATT
1 TATAATTAATT
67567067 TATA
1 TATA
67567071 TATTTATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 9 0.38
12 10 0.42
13 5 0.21
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (11 bp):
TATAATTAATT
Found at i:67567089 original size:24 final size:24
Alignment explanation
Indices: 67567006--67567086 Score: 87
Period size: 24 Copynumber: 3.4 Consensus size: 24
67566996 TTGTTTCTTT
*
67567006 TATATATAA-TAATATAATATTTA
1 TATATATAATTAATTTAATATTTA
*
67567029 TA-ATATAATTAATTTAATA-ATA
1 TATATATAATTAATTTAATATTTA
*
67567051 TACTTTATAATTAATTTATATATTTA
1 TA-TATATAATTAATTTA-ATATTTA
*
67567077 TATAAATAAT
1 TATATATAAT
67567087 AATATAAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
22 10 0.21
23 11 0.23
24 13 0.28
25 9 0.19
26 4 0.09
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (24 bp):
TATATATAATTAATTTAATATTTA
Found at i:67570152 original size:30 final size:30
Alignment explanation
Indices: 67570077--67570152 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
67570067 ATATTGATGA
* *
67570077 TATTTTATAATTATTTAATTAGAAAAATAT
1 TATTTTATTATTATTTAATAAGAAAAATAT
* * **
67570107 TATTTTATTAATATTTAATAAGATATTTAT
1 TATTTTATTATTATTTAATAAGAAAAATAT
67570137 TATTATT-TTATTATTT
1 TATT-TTATTATTATTT
67570153 TATTTAGTAT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 36 0.95
31 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (30 bp):
TATTTTATTATTATTTAATAAGAAAAATAT
Found at i:67579479 original size:15 final size:16
Alignment explanation
Indices: 67579454--67579483 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67579444 AAGATTGGAT
67579454 TTTTCTTTTCTTTTTC
1 TTTTCTTTTCTTTTTC
67579470 TTTT-TTTTCTTTTT
1 TTTTCTTTTCTTTTT
67579484 ATTTCCTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (16 bp):
TTTTCTTTTCTTTTTC
Found at i:67579492 original size:20 final size:20
Alignment explanation
Indices: 67579453--67579492 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
67579443 AAAGATTGGA
*
67579453 TTTTTCTTTTCTTTTTCTTT
1 TTTTTCTTTTCTTTTCCTTT
67579473 TTTTTCTTTT-TATTTCCTTT
1 TTTTTCTTTTCT-TTTCCTTT
67579493 GAAGTGAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTTCTTTTCTTTTCCTTT
Found at i:67582757 original size:21 final size:20
Alignment explanation
Indices: 67582707--67582760 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 20
67582697 TGTTCTAATT
67582707 AAAAA-AGAAGCTGAATGGA
1 AAAAAGAGAAGCTGAATGGA
*
67582726 AAAAGGAAGAAGCTGAATGGAA
1 AAAAAG-AGAAGCTGAATGG-A
67582748 AAAAAGAGAAGCT
1 AAAAAGAGAAGCT
67582761 TTGTTGCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.13
21 20 0.67
22 6 0.20
ACGTcount: A:0.57, C:0.06, G:0.28, T:0.09
Consensus pattern (20 bp):
AAAAAGAGAAGCTGAATGGA
Found at i:67582758 original size:24 final size:21
Alignment explanation
Indices: 67582711--67582750 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
67582701 CTAATTAAAA
67582711 AAGAAGCTGAATGGAAAAAGG
1 AAGAAGCTGAATGGAAAAAGG
67582732 AAGAAGCTGAATGGAAAAA
1 AAGAAGCTGAATGGAAAAA
67582751 AAGAGAAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.55, C:0.05, G:0.30, T:0.10
Consensus pattern (21 bp):
AAGAAGCTGAATGGAAAAAGG
Found at i:67587586 original size:7 final size:7
Alignment explanation
Indices: 67587574--67587598 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
67587564 TTGATTCTTA
67587574 AAAATTC
1 AAAATTC
67587581 AAAATTC
1 AAAATTC
67587588 AAAATTC
1 AAAATTC
67587595 AAAA
1 AAAA
67587599 AATCTGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAATTC
Found at i:67588238 original size:17 final size:17
Alignment explanation
Indices: 67588216--67588251 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
67588206 GTTTTGAAAG
67588216 AAATTATT-TTATTAATA
1 AAATTATTATT-TTAATA
67588233 AAATTATTATTTTAATA
1 AAATTATTATTTTAATA
67588250 AA
1 AA
67588252 TAAATTCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.89
18 2 0.11
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AAATTATTATTTTAATA
Found at i:67589786 original size:17 final size:18
Alignment explanation
Indices: 67589761--67589799 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
67589751 TTTTTTAATT
67589761 TTTTAGTAAATTTATATA
1 TTTTAGTAAATTTATATA
* *
67589779 TTTT-GTAATTTTCTATA
1 TTTTAGTAAATTTATATA
67589796 TTTT
1 TTTT
67589800 CTGTTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (18 bp):
TTTTAGTAAATTTATATA
Found at i:67595305 original size:51 final size:51
Alignment explanation
Indices: 67595234--67595333 Score: 123
Period size: 51 Copynumber: 2.0 Consensus size: 51
67595224 GGTTGAGGGG
67595234 TTTTAAAATTAGGATCTAATTGA-A-AATATTTATAAAAATTGAGGGTTAATT
1 TTTTAAAATTAGGATCTAATTGATATAATA--TATAAAAATTGAGGGTTAATT
* * * * *
67595285 TTTTAAATTTATGATTTAATTGATATAATATGTAAAAGTTGAGGGTTAA
1 TTTTAAAATTAGGATCTAATTGATATAATATATAAAAATTGAGGGTTAA
67595334 ATTTATTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
51 37 0.88
52 1 0.02
53 4 0.10
ACGTcount: A:0.41, C:0.01, G:0.15, T:0.43
Consensus pattern (51 bp):
TTTTAAAATTAGGATCTAATTGATATAATATATAAAAATTGAGGGTTAATT
Found at i:67597662 original size:17 final size:19
Alignment explanation
Indices: 67597640--67597682 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
67597630 ATGGAAATAT
67597640 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
67597657 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
67597676 AATCTTA
1 AATCTTA
67597683 GAAGATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 1 0.04
19 16 0.70
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:67597693 original size:22 final size:19
Alignment explanation
Indices: 67597648--67597684 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
67597638 ATAATCTTCA
67597648 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67597667 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
67597685 AGATATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:67597710 original size:22 final size:22
Alignment explanation
Indices: 67597648--67597707 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 22
67597638 ATAATCTTCA
*
67597648 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATATTAGAAGAT
*
67597667 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATATTAGAAGAT
* *
67597689 ATGATTTTGTAATATTAGA
1 ATGA-TATGCAATATTAGA
67597708 GATTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 15 0.44
22 8 0.24
23 11 0.32
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATATTAGAAGAT
Found at i:67606728 original size:76 final size:77
Alignment explanation
Indices: 67606630--67606893 Score: 446
Period size: 76 Copynumber: 3.5 Consensus size: 77
67606620 ATTCGACAGA
*
67606630 GAGCAGATCGAAGACATAGCAGATATGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
67606695 TGTATTAGACGG
66 TGTATTAGACGG
*
67606707 GAGCAGATC-AAGACACAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
67606771 TGTATTAGACGG
66 TGTATTAGACGG
*
67606783 GAAGCAGATCGAAGACATAACAGAT-TAGACCTTCATTGAAGCAGATCCAAGATGATTTGGCA--
1 G-AGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATC
67606845 TCTGTATTAGACGG
64 TCTGTATTAGACGG
*
67606859 GAGCAGATCGAAGACATAGCAGATCTAACCTTCAT
1 GAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
67606894 GTGTTTACAT
Statistics
Matches: 177, Mismatches: 6, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
75 30 0.17
76 82 0.46
77 18 0.10
78 47 0.27
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (77 bp):
GAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
TGTATTAGACGG
Found at i:67606787 original size:41 final size:41
Alignment explanation
Indices: 67606666--67606797 Score: 109
Period size: 41 Copynumber: 3.4 Consensus size: 41
67606656 GACCTTCATT
67606666 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGG
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGG
* ** ** * **
67606707 G-AGCAGAT-CAAGA-CA--CAGCAGATCTG-ACCTT-CA-TT
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTA--TTAGACGG
67606742 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGG
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGG
*
67606783 GAAGCAGATCGAAGA
1 GAAGCAGATCCAAGA
67606798 CATAACAGAT
Statistics
Matches: 64, Mismatches: 17, Indels: 20
0.63 0.17 0.20
Matches are distributed among these distances:
35 2 0.03
36 15 0.23
37 7 0.11
38 2 0.03
39 7 0.11
40 15 0.23
41 16 0.25
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (41 bp):
GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGG
Found at i:67606969 original size:42 final size:42
Alignment explanation
Indices: 67606917--67607086 Score: 195
Period size: 42 Copynumber: 4.0 Consensus size: 42
67606907 AGTAGATCCA
* *
67606917 AGATGACAGATTTGGCATCTCTGTATTAGATGGGAGCAAATC
1 AGATAACAGATTTGGCATCTCTGTATTAGACGGGAGCAAATC
* *
67606959 AGATAACAGATTTGGCA--TCTGTATTAGACGGGGAGCAGATTGA
1 AGATAACAGATTTGGCATCTCTGTATTAGAC-GGGAGCA-AAT-C
* *
67607002 AGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGAGC-AATC
1 AGATAACAGATTTGGCATCTCTGTATTAGACGGGAGCAAATC
* *
67607042 AAGATAACAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATC
1 -AGATAACAGATTTGGCATCTCTGTATTAGACG-GGAGCAAATC
67607086 A
1 A
67607087 AAGATAGCAG
Statistics
Matches: 109, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
40 11 0.10
41 12 0.11
42 56 0.51
43 15 0.14
44 15 0.14
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (42 bp):
AGATAACAGATTTGGCATCTCTGTATTAGACGGGAGCAAATC
Found at i:67607022 original size:84 final size:86
Alignment explanation
Indices: 67606910--67607098 Score: 260
Period size: 84 Copynumber: 2.2 Consensus size: 86
67606900 ACATCGAAGT
* *
67606910 AGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAGATGGGAGCAAATC-AGATAACAGATTTG
1 AGATCAAAGATAG-CAGATTTGGCATCTCTGTATTAGACGGGAGC-AATCAAGATAACAGATTTG
*
67606973 GC-ATCTGTATTAGACGGGGAGC
64 GCGATCTGTATTAGACGAGGAGC
** *
67606995 AGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGAGCAATCAAGATAACAGATTTGGC
1 AGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGAGCAATCAAGATAACAGATTTGGC
*
67607059 GTCTCTGTATTAGACGAGGAGC
66 G-ATCTGTATTAGACGAGGAGC
67607081 AGATCAAAGATAGCAGAT
1 AGATCAAAGATAGCAGAT
67607099 ATCGCATTCC
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
83 4 0.04
84 45 0.49
85 9 0.10
86 26 0.29
87 7 0.08
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.25
Consensus pattern (86 bp):
AGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGAGCAATCAAGATAACAGATTTGGC
GATCTGTATTAGACGAGGAGC
Found at i:67607447 original size:14 final size:15
Alignment explanation
Indices: 67607428--67607481 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 15
67607418 AATCTTCAAT
67607428 GATATG-CAATCTTA
1 GATATGACAATCTTA
67607442 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
67607459 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
67607477 GATAT
1 GATAT
67607482 AATATGCAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.18
15 1 0.03
17 14 0.41
18 13 0.38
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:67607450 original size:19 final size:19
Alignment explanation
Indices: 67607426--67607497 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
67607416 ATAATCTTCA
67607426 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67607445 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67607462 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
67607480 ATAATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
67607498 AGATATGATT
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
17 16 0.33
18 15 0.31
19 18 0.37
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:67607454 original size:17 final size:17
Alignment explanation
Indices: 67607434--67607497 Score: 83
Period size: 17 Copynumber: 3.6 Consensus size: 17
67607424 CAATGATATG
67607434 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
67607451 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
*
67607469 CAATCTTAGATATAATA
1 CAATCTTAGATATGATA
67607486 TGCAATCTTAGA
1 --CAATCTTAGA
67607498 AGATATGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
17 16 0.39
18 15 0.37
19 10 0.24
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:67607472 original size:35 final size:37
Alignment explanation
Indices: 67607426--67607504 Score: 112
Period size: 35 Copynumber: 2.2 Consensus size: 37
67607416 ATAATCTTCA
*
67607426 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATAATAGCAATCTTAGAT
67607462 ATGAT-TGCAATCTTAGATATAATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATAATA-GCAATCTTAGAT
67607498 A-GATATG
1 ATGATATG
67607505 ATTTTGTGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
35 21 0.54
36 8 0.21
37 10 0.26
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATAATAGCAATCTTAGAT
Found at i:67609672 original size:26 final size:26
Alignment explanation
Indices: 67609625--67609674 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
67609615 GTGGAGTAAT
67609625 AATAACAATAATAAAAGGTAAAATAA
1 AATAACAATAATAAAAGGTAAAATAA
67609651 AATAA-AA-AATAGAAAGGCTAAAAT
1 AATAACAATAATA-AAAGG-TAAAAT
67609675 GTTAAAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 4 0.18
25 7 0.32
26 11 0.50
ACGTcount: A:0.68, C:0.04, G:0.10, T:0.18
Consensus pattern (26 bp):
AATAACAATAATAAAAGGTAAAATAA
Found at i:67609702 original size:11 final size:11
Alignment explanation
Indices: 67609688--67609726 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
67609678 AAAATGATGT
*
67609688 ATAATAATTAA
1 ATAATAATGAA
*
67609699 ATAAATAAAGAA
1 AT-AATAATGAA
67609711 ATAATAATGAA
1 ATAATAATGAA
67609722 ATAAT
1 ATAAT
67609727 GGGGTTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (11 bp):
ATAATAATGAA
Found at i:67609820 original size:23 final size:24
Alignment explanation
Indices: 67609793--67609840 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
67609783 TCACATGAGA
67609793 ATGCCTAAAAT-AAAAAAAAGAAC
1 ATGCCTAAAATAAAAAAAAAGAAC
67609816 ATGCCTAAAATAAAAAAAAAGAAC
1 ATGCCTAAAATAAAAAAAAAGAAC
67609840 A
1 A
67609841 AAACTAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.67, C:0.12, G:0.08, T:0.12
Consensus pattern (24 bp):
ATGCCTAAAATAAAAAAAAAGAAC
Found at i:67609847 original size:24 final size:23
Alignment explanation
Indices: 67609797--67609847 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
67609787 ATGAGAATGC
***
67609797 CTAAAATAAAAAAAAGAACATGC
1 CTAAAATAAAAAAAAGAACAAAA
67609820 CTAAAATAAAAAAAAAGAACAAAA
1 CTAAAAT-AAAAAAAAGAACAAAA
67609844 CTAA
1 CTAA
67609848 TAAATGAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.71, C:0.12, G:0.06, T:0.12
Consensus pattern (23 bp):
CTAAAATAAAAAAAAGAACAAAA
Found at i:67609917 original size:46 final size:46
Alignment explanation
Indices: 67609821--67609917 Score: 103
Period size: 46 Copynumber: 2.1 Consensus size: 46
67609811 AGAACATGCC
* **
67609821 TAAAATAAAAAAAAAGAACAAAACTAATAAATGAACAAGTATACGC
1 TAAAATAAAAAAAAAGAACAAAACTAATAAAAGAACAAGTATACAA
67609867 TAAAATAAAATAAAATAAGAACAAAA-TAATAAAAG-ACAA-TGATA-AA
1 TAAAAT-AAA-AAAA-AAGAACAAAACTAATAAAAGAACAAGT-ATACAA
67609913 TAAAA
1 TAAAA
67609918 CGTACCCATA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
46 12 0.27
47 10 0.23
48 12 0.27
49 10 0.23
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.16
Consensus pattern (46 bp):
TAAAATAAAAAAAAAGAACAAAACTAATAAAAGAACAAGTATACAA
Found at i:67611688 original size:134 final size:134
Alignment explanation
Indices: 67611527--67611867 Score: 434
Period size: 134 Copynumber: 2.5 Consensus size: 134
67611517 TCAACTTGCC
* * *
67611527 CCACTGCAACTTCAGAGG-GATGAGGACTCGTAACTTCAACCTGCCCCACTGTAACTTCAGGGAG
1 CCACTGCAACTTCAG-GGAGAT-AGGACTCATAACTTCAACCTGACCCACTGCAACTTCAGGGAG
* * * *
67611591 ATAAGGTTTATAGCTTTAACTTTGCTCTACTGCAATTTTAAAGAGATAAGATTTGCTATCTT-GG
64 ATAAGGTTTATAGCTTTAACTCTGCTCTACTGCAATTTCAAAGAGATAAGATTTGCTAACTTCAG
*
67611655 ATCCGTT
129 -TCCGCT
* ** * * *
67611662 TCACTGCAACTTCAGGGAGATAGGACTCATAACTTTTACCTGTCCCACTGCAACTTGAGGGGGAT
1 CCACTGCAACTTCAGGGAGATAGGACTCATAACTTCAACCTGACCCACTGCAACTTCAGGGAGAT
* *
67611727 AAGGTTTATAGCTTTAACTCTGCTCTACTGCAATTTCAGAGAGATAATATTTGCTAACTTCAGTC
66 AAGGTTTATAGCTTTAACTCTGCTCTACTGCAATTTCAAAGAGATAAGATTTGCTAACTTCAGTC
*
67611792 TGCT
131 CGCT
* ** * * *
67611796 CCACTGCAACTTCAAGGAGATAACACTTATAACTTCAACCTGATCCACTGCAACTTCAGAGAGAT
1 CCACTGCAACTTCAGGGAGATAGGACTCATAACTTCAACCTGACCCACTGCAACTTCAGGGAGAT
67611861 AAGGTTT
66 AAGGTTT
67611868 GTGGCTTCAA
Statistics
Matches: 176, Mismatches: 28, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
134 158 0.90
135 18 0.10
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (134 bp):
CCACTGCAACTTCAGGGAGATAGGACTCATAACTTCAACCTGACCCACTGCAACTTCAGGGAGAT
AAGGTTTATAGCTTTAACTCTGCTCTACTGCAATTTCAAAGAGATAAGATTTGCTAACTTCAGTC
CGCT
Found at i:67611877 original size:44 final size:44
Alignment explanation
Indices: 67611433--67611863 Score: 247
Period size: 45 Copynumber: 9.7 Consensus size: 44
67611423 ATAGTTTGAT
* * * * ** **
67611433 CTGCTTCATTGCAACTTCAGGGAGATAAGATCTACTTTCTTCAGT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTA-TAACTTCAAC
* * * *
67611478 CTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAAC
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTATAACTTCAAC
* * * * * **
67611522 TTGCCCCACTGCAACTTCAGAGGGATGAGGACTCGTAACTTCAAC
1 CTGCTCCACTGCAACTTCAGAGAGAT-AAGATTTATAACTTCAAC
* * * * * *
67611567 CTGCCCCACTGTAACTTCAGGGAGATAAGGTTTATAGCTTTAAC
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTATAACTTCAAC
* * * * * * * * *
67611611 TTTGCTCTACTGCAATTTTAAAGAGATAAGATTTGCTATCTTGGATC
1 -CTGCTCCACTGCAACTTCAGAGAGATAAGATTT-ATAACTT-CAAC
* * * * * * **
67611658 C-GTTTCACTGCAACTTCAGGGAGATAGGACTCATAACTTTTAC
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTATAACTTCAAC
* * * * * *
67611701 CTG-TCCCACTGCAACTTGAGGGGGATAAGGTTTATAGCTTTAAC
1 CTGCT-CCACTGCAACTTCAGAGAGATAAGATTTATAACTTCAAC
* * * * **
67611745 TCTGCTCTACTGCAATTTCAGAGAGATAATATTTGCTAACTTCAGT
1 -CTGCTCCACTGCAACTTCAGAGAGATAAGATTT-ATAACTTCAAC
* *
67611791 CTGCTCCACTGCAACTTCA-AGGAGATAACACTTATAACTTCAAC
1 CTGCTCCACTGCAACTTCAGA-GAGATAAGATTTATAACTTCAAC
*
67611835 CTGATCCACTGCAACTTCAGAGAGATAAG
1 CTGCTCCACTGCAACTTCAGAGAGATAAG
67611864 GTTTGTGGCT
Statistics
Matches: 288, Mismatches: 87, Indels: 23
0.72 0.22 0.06
Matches are distributed among these distances:
43 3 0.01
44 108 0.38
45 163 0.57
46 12 0.04
47 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGAGAGATAAGATTTATAACTTCAAC
Found at i:67616205 original size:4 final size:4
Alignment explanation
Indices: 67616196--67616224 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
67616186 AGCAAACGTG
67616196 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
67616225 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:67617050 original size:47 final size:47
Alignment explanation
Indices: 67616986--67617096 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
67616976 GACATTGAGT
* *
67616986 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTATTC
* * *
67617033 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTATTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
67617080 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
67617097 CTTATCCCGG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 51 0.93
48 4 0.07
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
Found at i:67624282 original size:47 final size:47
Alignment explanation
Indices: 67624218--67624328 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
67624208 GACATTGAGT
* *
67624218 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTATTC
* * *
67624265 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTATTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
67624312 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
67624329 CTTATCCCGG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 51 0.93
48 4 0.07
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
Found at i:67627448 original size:52 final size:48
Alignment explanation
Indices: 67627386--67627578 Score: 182
Period size: 47 Copynumber: 4.0 Consensus size: 48
67627376 GAAATGTGAT
* *
67627386 TTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAAATGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATC-GAG---TGTGATATGTGC
* *
67627438 TTCCGTATAAGACCATATCCGGGATATGGCATCG-GTGTGATATGTGC
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* *
67627485 TAT-TGTATAAGACCATATCTGGGATATGGCATC-AGTGTGATATGTG-
1 T-TCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
* * * *
67627531 ATCCGTGTAAGACCAT-GACTGGGCTATGGCCTCG-GTATGTGATATGTG
1 TTCCGTATAAGACCATAG-CTGGGATATGGCATCGAG--TGTGATATGTG
67627579 ACTGTGCAAG
Statistics
Matches: 122, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
45 1 0.01
46 25 0.20
47 53 0.43
48 12 0.10
50 1 0.01
51 1 0.01
52 29 0.24
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (48 bp):
TTCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGC
Found at i:67627495 original size:47 final size:47
Alignment explanation
Indices: 67627364--67627546 Score: 174
Period size: 47 Copynumber: 3.8 Consensus size: 47
67627354 TGGTTGGACC
* * * * * *
67627364 ATGGCAGCA-TGTGAAATGTGATTTCCGTATAAGACCATAGCTGGGCT
1 ATGGCATCAGTGTGATATGTG-CTTCCGTATAAGACCATATCCGGGAT
*
67627411 ATGGCTTCGGAGAAATGTGATATGTGCTTCCGTATAAGACCATATCCGGGAT
1 ATGGCATC--AG---TGTGATATGTGCTTCCGTATAAGACCATATCCGGGAT
* * *
67627463 ATGGCATCGGTGTGATATGTGCTAT-TGTATAAGACCATATCTGGGAT
1 ATGGCATCAGTGTGATATGTGCT-TCCGTATAAGACCATATCCGGGAT
* *
67627510 ATGGCATCAGTGTGATATGTG-ATCCGTGTAAGACCAT
1 ATGGCATCAGTGTGATATGTGCTTCCGTATAAGACCAT
67627547 GACTGGGCTA
Statistics
Matches: 113, Mismatches: 15, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
45 1 0.01
46 11 0.10
47 59 0.52
48 1 0.01
49 1 0.01
50 1 0.01
52 29 0.26
53 10 0.09
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (47 bp):
ATGGCATCAGTGTGATATGTGCTTCCGTATAAGACCATATCCGGGAT
Done.