Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 219 of 250
Found at i:67635075 original size:44 final size:43
Alignment explanation
Indices: 67634938--67635338 Score: 135
Period size: 44 Copynumber: 9.1 Consensus size: 43
67634928 GTTTATCATA
* *
67634938 GCTTCGATCTATTCCGCTGGAACTTCAAGAAGATAAGAATTGTG
1 GCTTCGATCTACTCCGCTGGAACTTCAAGGAGAT-AGAATTGTG
* ** ** ** * * *
67634982 GCTTCGAGCCGCTCCAATGCCATTTCATGGAGA-AGAGATTTGTA
1 GCTTCGATCTACTCCGCTGGAACTTCAAGGAGATAGA-A-TTGTG
* *
67635026 ACTTCGATTTACTCCGCTGGAACTTCAAGGAGATACGAATTGTG
1 GCTTCGATCTACTCCGCTGGAACTTCAAGGAGATA-GAATTGTG
* ** ** ** * * * * *
67635070 GCTTCGAGCCGCTCCAATGTCATTTTAGGGA-AAAGAGATATGTA
1 GCTTCGATCTACTCCGCTGGAACTTCAAGGAGATAGA-AT-TGTG
* * *
67635114 GCTTCGATCTACTCCGTTGAAACTTCAAGGAAATACGAATTGTG
1 GCTTCGATCTACTCCGCTGGAACTTCAAGGAGATA-GAATTGTG
* ** * ** * * * * *
67635158 GCTTCGAGCCGCTCTAG-TGCCATTTCAGGGAGAAAAAATTTGTA
1 GCTTCGATCTACTC-CGCTGGAACTTCAAGGAGATAGAA-TTGTG
* * * *
67635202 GCTTCGATCTATTCCGCTGGAACTTCAATGAGATACAAATTGTA
1 GCTTCGATCTACTCCGCTGGAACTTCAAGGAGATA-GAATTGTG
* ** ** ** * * *
67635246 GCTTCGAGCCGCTCCAATGCCATTTCAGGGAGA-AGAAATTTGTA
1 GCTTCGATCTACTCCGCTGGAACTTCAAGGAGATAG-AA-TTGTG
* * * *
67635290 TCTTCGATCTACTCTGCTGAAACTTAAAGGAGATACGAATTGTG
1 GCTTCGATCTACTCCGCTGGAACTTCAAGGAGATA-GAATTGTG
67635334 GCTTC
1 GCTTC
67635339 CAGCCGCTCT
Statistics
Matches: 242, Mismatches: 99, Indels: 32
0.65 0.27 0.09
Matches are distributed among these distances:
42 5 0.02
43 11 0.05
44 208 0.86
45 13 0.05
46 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (43 bp):
GCTTCGATCTACTCCGCTGGAACTTCAAGGAGATAGAATTGTG
Found at i:67635088 original size:88 final size:88
Alignment explanation
Indices: 67634936--67635510 Score: 709
Period size: 88 Copynumber: 6.5 Consensus size: 88
67634926 CGGTTTATCA
* * *
67634936 TAGCTTCGATCTATTCCGCTGGAACTTCAAGAAGATAAGAATTGTGGCTTCGAGCCGCTCCAATG
1 TAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTGTGGCTTCGAGCCGCTCCAATG
*
67635001 CCATTTCATGGAGAAGAGATTTG
66 CCATTTCAGGGAGAAGAGATTTG
* *
67635024 TAACTTCGATTTACTCCGCTGGAACTTCAAGGAGATACGAATTGTGGCTTCGAGCCGCTCCAATG
1 TAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTGTGGCTTCGAGCCGCTCCAATG
* * * *
67635089 TCATTTTAGGGAAAAGAGATATG
66 CCATTTCAGGGAGAAGAGATTTG
* * * * *
67635112 TAGCTTCGATCTACTCCGTTGAAACTTCAAGGAAATACGAATTGTGGCTTCGAGCCGCTCTAGTG
1 TAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTGTGGCTTCGAGCCGCTCCAATG
* *
67635177 CCATTTCAGGGAGAAAAAATTTG
66 CCATTTCAGGGAGAAGAGATTTG
* * * *
67635200 TAGCTTCGATCTATTCCGCTGGAACTTCAATGAGATACAAATTGTAGCTTCGAGCCGCTCCAATG
1 TAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTGTGGCTTCGAGCCGCTCCAATG
*
67635265 CCATTTCAGGGAGAAGAAATTTG
66 CCATTTCAGGGAGAAGAGATTTG
* * * * * * *
67635288 TATCTTCGATCTACTCTGCTGAAACTTAAAGGAGATACGAATTGTGGCTTCCAGCCGCTCTAGTG
1 TAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTGTGGCTTCGAGCCGCTCCAATG
* *
67635353 CCATTTCAGAGAGAAAAGATTTG
66 CCATTTCAGGGAGAAGAGATTTG
* ** ** * * *
67635376 TAACTTCGATCTACTCCATTAAAACTTCAAAGAGATACGAATTGTGGCTTTGAGCCGCTCTAATG
1 TAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTGTGGCTTCGAGCCGCTCCAATG
* * *
67635441 GCATTTTAGAGAGAAGAGATTTG
66 CCATTTCAGGGAGAAGAGATTTG
* * * * * * *
67635464 TAGCTTTGATCTACTCCACTAGAGCTTTATGGAGATAAGAATTGTGG
1 TAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTGTGG
67635511 TTTCAACCTG
Statistics
Matches: 418, Mismatches: 69, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 418 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (88 bp):
TAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTGTGGCTTCGAGCCGCTCCAATG
CCATTTCAGGGAGAAGAGATTTG
Found at i:67635416 original size:264 final size:264
Alignment explanation
Indices: 67634936--67635508 Score: 783
Period size: 264 Copynumber: 2.2 Consensus size: 264
67634926 CGGTTTATCA
*
67634936 TAGCTTCGATCTATTCCGCTGGAACTTCAAGAAGATAAGAATTGTGGCTTCGAGCCGCTCCAATG
1 TAGCTTCGATCTATTCCGCTGGAACTTCAAGAAGATAAGAATTGTAGCTTCGAGCCGCTCCAATG
* * * * *
67635001 CCATTTCATGGAGAAGAGATTTGTAACTTCGATTTACTCCGCTGGAACTTCAAGGAGATACGAAT
66 CCATTTCAGGGAGAAGAAATTTGTAACTTCGATCTACTCCGCTGAAACTTAAAGGAGATACGAAT
* * * * * *
67635066 TGTGGCTTCGAGCCGCTCCAATGTCATTTTAGGGAAAAGAGATATGTAGCTTCGATCTACTCCGT
131 TGTGGCTTCCAGCCGCTCCAATGCCATTTCAGAGAAAAGAGATATGTAACTTCGATCTACTCCAT
* * * *
67635131 TGAAACTTCAAGGAAATACGAATTGTGGCTTCGAGCCGCTCTAGTGCCATTTCAGGGAGAAAAAA
196 TAAAACTTCAAAGAAATACGAATTGTGGCTTCGAGCCGCTCTAATGCCATTTCAGAGAGAAAAAA
67635196 TTTG
261 TTTG
67635200 TAGCTTCGATCTATTCCGCTGGAACTTCAATG-AGATACA-AATTGTAGCTTCGAGCCGCTCCAA
1 TAGCTTCGATCTATTCCGCTGGAACTTCAA-GAAGATA-AGAATTGTAGCTTCGAGCCGCTCCAA
* *
67635263 TGCCATTTCAGGGAGAAGAAATTTGTATCTTCGATCTACTCTGCTGAAACTTAAAGGAGATACGA
64 TGCCATTTCAGGGAGAAGAAATTTGTAACTTCGATCTACTCCGCTGAAACTTAAAGGAGATACGA
* * *
67635328 ATTGTGGCTTCCAGCCGCTCTAGTGCCATTTCAGAGAGAAA-AGATTTGTAACTTCGATCTACTC
129 ATTGTGGCTTCCAGCCGCTCCAATGCCATTTCAGAGA-AAAGAGATATGTAACTTCGATCTACTC
* * * * *
67635392 CATTAAAACTTCAAAGAGATACGAATTGTGGCTTTGAGCCGCTCTAATGGCATTTTAGAGAGAAG
193 CATTAAAACTTCAAAGAAATACGAATTGTGGCTTCGAGCCGCTCTAATGCCATTTCAGAGAGAAA
*
67635457 AGATTTG
258 AAATTTG
* * * * * * * *
67635464 TAGCTTTGATCTACTCCACTAGAGCTTTATGGAGATAAGAATTGT
1 TAGCTTCGATCTATTCCGCTGGAACTTCAAGAAGATAAGAATTGT
67635509 GGTTTCAACC
Statistics
Matches: 270, Mismatches: 34, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
263 2 0.01
264 263 0.97
265 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (264 bp):
TAGCTTCGATCTATTCCGCTGGAACTTCAAGAAGATAAGAATTGTAGCTTCGAGCCGCTCCAATG
CCATTTCAGGGAGAAGAAATTTGTAACTTCGATCTACTCCGCTGAAACTTAAAGGAGATACGAAT
TGTGGCTTCCAGCCGCTCCAATGCCATTTCAGAGAAAAGAGATATGTAACTTCGATCTACTCCAT
TAAAACTTCAAAGAAATACGAATTGTGGCTTCGAGCCGCTCTAATGCCATTTCAGAGAGAAAAAA
TTTG
Found at i:67635640 original size:85 final size:85
Alignment explanation
Indices: 67635518--67635718 Score: 276
Period size: 85 Copynumber: 2.3 Consensus size: 85
67635508 TGGTTTCAAC
* * * * * *
67635518 CTGCTCTACTACTGCTCAGGGAGACAAGATCTATAATCTTCAGTCTACTCCACTATTGTTTAGTG
1 CTGCTCCACTACTGCT-TGGGAGACAAGATCTATAATCTTCAGCCTACTCCACTACTGCTTAGGG
*
67635583 ATATAGGATAGTGGCTTAAAT
65 AGATAGGATAGTGGCTTAAAT
* *
67635604 CTGCTCCACTACTGCTTGGGAGACCAGATCTGTAATCTTCAGCCTACTCCACTACTGCTTAGGGA
1 CTGCTCCACTACTGCTTGGGAGACAAGATCTATAATCTTCAGCCTACTCCACTACTGCTTAGGGA
*
67635669 GATAGGATGGTGGCTTAAAT
66 GATAGGATAGTGGCTTAAAT
* *
67635689 CTACTCCACTACTGCTTAGGGAGATAAGAT
1 CTGCTCCACTACTGCTT-GGGAGACAAGAT
67635719 ATGTGAATTC
Statistics
Matches: 101, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
85 76 0.75
86 25 0.25
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (85 bp):
CTGCTCCACTACTGCTTGGGAGACAAGATCTATAATCTTCAGCCTACTCCACTACTGCTTAGGGA
GATAGGATAGTGGCTTAAAT
Found at i:67635702 original size:42 final size:42
Alignment explanation
Indices: 67635561--67635719 Score: 151
Period size: 42 Copynumber: 3.8 Consensus size: 42
67635551 TAATCTTCAG
* * * *
67635561 TCTACTCCACTATTGTTTAGTGATATAGGATAGTGGCTTAAA
1 TCTACTCCACTACTGCTTAGGGAGATAGGATAGTGGCTTAAA
* * * ** * *
67635603 TCTGCTCCACTACTGCTT-GGGAGACCA-GATCTGTAATCTTCAG
1 TCTACTCCACTACTGCTTAGGGAGA-TAGGAT-AGT-GGCTTAAA
* *
67635646 CCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAA
1 TCTACTCCACTACTGCTTAGGGAGATAGGATAGTGGCTTAAA
*
67635688 TCTACTCCACTACTGCTTAGGGAGATAAGATA
1 TCTACTCCACTACTGCTTAGGGAGATAGGATA
67635720 TGTGAATTCA
Statistics
Matches: 90, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
41 7 0.08
42 51 0.57
43 23 0.26
44 9 0.10
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (42 bp):
TCTACTCCACTACTGCTTAGGGAGATAGGATAGTGGCTTAAA
Found at i:67636440 original size:30 final size:30
Alignment explanation
Indices: 67636395--67636453 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
67636385 CTTAACAAGT
67636395 AAATACCTCTAAAATAAT-AATAAAATTAAC
1 AAATACCTCTAAAATAATGAA-AAAATTAAC
* *
67636425 AAATGCCTTTAAAATAATGAAAAAATTAA
1 AAATACCTCTAAAATAATGAAAAAATTAA
67636454 TAATAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.27
Consensus pattern (30 bp):
AAATACCTCTAAAATAATGAAAAAATTAAC
Found at i:67645891 original size:26 final size:26
Alignment explanation
Indices: 67645833--67645891 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
67645823 AAAAATTTTA
*
67645833 AAATTTTAAATTAATAAAAATAAAAT
1 AAATTTTAAATTAATAAAAATAAAAG
* ** *
67645859 AATATTTTAATTTCTTAAAAATAATAG
1 AA-ATTTTAAATTAATAAAAATAAAAG
67645886 AAATTT
1 AAATTT
67645892 GATTTAATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (26 bp):
AAATTTTAAATTAATAAAAATAAAAG
Found at i:67646519 original size:21 final size:21
Alignment explanation
Indices: 67646495--67646537 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
67646485 TAACTTAAAG
*
67646495 ATTAATTAATTTATTCAAATT
1 ATTAATTAATTAATTCAAATT
* *
67646516 ATTATTTAATTAATTGAAATT
1 ATTAATTAATTAATTCAAATT
67646537 A
1 A
67646538 AATAACTGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
ATTAATTAATTAATTCAAATT
Found at i:67647656 original size:15 final size:15
Alignment explanation
Indices: 67647631--67647679 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
67647621 TTATTTTATT
67647631 TTATTTT-ATATATA
1 TTATTTTAATATATA
67647645 TTATTTTAATATATA
1 TTATTTTAATATATA
* *
67647660 CTATTTTGAAT-TATT
1 TTATTTT-AATATATA
67647675 TTATT
1 TTATT
67647680 GATTTTGCAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
14 7 0.23
15 20 0.67
16 3 0.10
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (15 bp):
TTATTTTAATATATA
Found at i:67655063 original size:132 final size:132
Alignment explanation
Indices: 67654760--67655159 Score: 500
Period size: 132 Copynumber: 3.0 Consensus size: 132
67654750 AAATGGCGGG
* ** * *
67654760 TCTTATCTCCATATATCGGCTATGGAGCAGATTTTAGTTACCAGCCTTATCTCTGTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGCA
* * * * * ** * *
67654825 AGAGAGCAGGTTAAAAAT-CCAGGTCTTATCTTCCTGAGGTAGTAAGG-AAGCAGGCTAAAAATT
66 AGAGAGCAGGTTGAAGATACGA-GCCTTAACCCCCT-AAGCAGTAAGGTAA-CAGGCTAAAAATT
*
67654888 ATAGA
128 ACAGA
* *
67654893 TCTTATTTCCATGTATCGGCTATAGAGCAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGCA
* * * *
67654958 AGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAGTAGGGTAACGGGCTGAAATTTACA
66 AGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAGTAAGGTAACAGGCTAAAAATTACA
67655023 GA
131 GA
* * *
67655025 TCTTATCTCTATGTATCGGCTATGGAGTAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGCA
* * *
67655090 AGAGAGTAGGTTGAAGATATGAGCCTTAACCCCCTAAGCAGTAAGGTAACAGGTTATAAAA-TAC
66 AGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAGTAAGGTAACAGGCTA-AAAATTAC
67655154 AGA
130 AGA
67655157 TCT
1 TCT
67655160 CCCTTAAACA
Statistics
Matches: 231, Mismatches: 33, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
132 141 0.61
133 88 0.38
134 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (132 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGGCCTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCAGTAAGGTAACAGGCTAAAAATTACA
GA
Found at i:67656571 original size:46 final size:46
Alignment explanation
Indices: 67656519--67656694 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
67656509 TGGTTGAGCA
67656519 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
67656565 TTCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
67656610 CATCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
67656658 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67656695 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.58
47 25 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67656675 original size:93 final size:93
Alignment explanation
Indices: 67656516--67656686 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
67656506 GGATGGTTGA
* * **
67656516 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
67656581 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
67656609 GCATCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
67656674 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67656687 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67659327 original size:22 final size:23
Alignment explanation
Indices: 67659302--67659347 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
67659292 CAACCAAATC
67659302 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
67659324 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
67659347 A
1 A
67659348 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:67659353 original size:23 final size:23
Alignment explanation
Indices: 67659309--67659353 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
67659299 ATCAATTCAA
*
67659309 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
67659332 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
67659354 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:67662817 original size:5 final size:5
Alignment explanation
Indices: 67662807--67662870 Score: 51
Period size: 5 Copynumber: 13.0 Consensus size: 5
67662797 AGTTCATATC
* * * * *
67662807 TTATT TTATT TTATT TTATT TTA-T ATATA TTATT TTAAT ATATA TTATT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT
*
67662856 TTGA-A TTATT TTATT
1 TT-ATT TTATT TTATT
67662871 GATTTTGCAC
Statistics
Matches: 44, Mismatches: 12, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
4 4 0.09
5 39 0.89
6 1 0.02
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (5 bp):
TTATT
Found at i:67662840 original size:29 final size:29
Alignment explanation
Indices: 67662802--67662857 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
67662792 GTTTTAGTTC
* * * *
67662802 ATATCTTATTTTATTTTATTTTATTTTAT
1 ATATATTATTTTAATATATATTATTTTAT
67662831 ATATATTATTTTAATATATATTATTTT
1 ATATATTATTTTAATATATATTATTTT
67662858 GAATTATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (29 bp):
ATATATTATTTTAATATATATTATTTTAT
Found at i:67662850 original size:19 final size:18
Alignment explanation
Indices: 67662813--67662855 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
67662803 TATCTTATTT
* *
67662813 TATT-TTATTTTATTTTA
1 TATTATTATTTTAATATA
67662830 TATATATTATTTTAATATA
1 TAT-TATTATTTTAATATA
67662849 TATTATT
1 TATTATT
67662856 TTGAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 5 0.23
19 14 0.64
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TATTATTATTTTAATATA
Found at i:67662869 original size:15 final size:15
Alignment explanation
Indices: 67662802--67662870 Score: 70
Period size: 15 Copynumber: 4.7 Consensus size: 15
67662792 GTTTTAGTTC
* *
67662802 ATATCTTATTTTATT
1 ATATATTATTTTAAT
* *
67662817 TTATTTTATTTT-AT
1 ATATATTATTTTAAT
67662831 ATATATTATTTTAAT
1 ATATATTATTTTAAT
67662846 ATATATTATTTTGAAT
1 ATATATTATTTT-AAT
*
67662862 -TATTTTATT
1 ATATATTATT
67662871 GATTTTGCAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
14 11 0.24
15 32 0.70
16 3 0.07
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.67
Consensus pattern (15 bp):
ATATATTATTTTAAT
Found at i:67665615 original size:19 final size:20
Alignment explanation
Indices: 67665572--67665622 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
67665562 AAAAAAAATT
67665572 ATAAAAATAATAAATTTTAG
1 ATAAAAATAATAAATTTTAG
* *
67665592 A-AAAATTATTAAATTTT-G
1 ATAAAAATAATAAATTTTAG
67665610 ATAAAAAT-ATAAA
1 ATAAAAATAATAAA
67665623 AAAATTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 6 0.23
19 19 0.73
20 1 0.04
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (20 bp):
ATAAAAATAATAAATTTTAG
Found at i:67665626 original size:48 final size:47
Alignment explanation
Indices: 67665565--67665681 Score: 114
Period size: 48 Copynumber: 2.4 Consensus size: 47
67665555 AATTAGAAAA
* *
67665565 AAAAATTATAAAAATAATAAATTTTA-GAAAAATTATTAA-ATTTTGAT
1 AAAAATTAAAAAAATAA-AAATTTTATGAAAAATTA-GAATATTTTGAT
* * *
67665612 AAAAATATAAAAAAATTAAAAA-TTTATTAAAAATTAGAATTTTTTTAT
1 AAAAAT-TAAAAAAA-TAAAAATTTTATGAAAAATTAGAATATTTTGAT
67665660 AAAAATTGTAAAAAAATAAAAA
1 AAAAA-T-TAAAAAAATAAAAA
67665682 ATTGTAAAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
47 12 0.20
48 35 0.59
49 12 0.20
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (47 bp):
AAAAATTAAAAAAATAAAAATTTTATGAAAAATTAGAATATTTTGAT
Found at i:67665943 original size:28 final size:29
Alignment explanation
Indices: 67665912--67666008 Score: 101
Period size: 28 Copynumber: 3.4 Consensus size: 29
67665902 CTTACGGATT
*
67665912 TATAAAATTTTATATTTTTTTA-TATTTC
1 TATAAAATTTTATAATTTTTTACTATTTC
* *
67665940 TAT-ATATTTTATAATTTTTTACTATTTT
1 TATAAAATTTTATAATTTTTTACTATTTC
* * *
67665968 TATAAAATTTAAT-ACTTTTTACTATTTT
1 TATAAAATTTTATAATTTTTTACTATTTC
*
67665996 TAATAAATTTTTA
1 T-ATAAAATTTTA
67666009 ACATTTTAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
27 16 0.28
28 26 0.45
29 16 0.28
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (29 bp):
TATAAAATTTTATAATTTTTTACTATTTC
Found at i:67665994 original size:56 final size:55
Alignment explanation
Indices: 67665910--67666037 Score: 134
Period size: 56 Copynumber: 2.3 Consensus size: 55
67665900 TTCTTACGGA
* * * ** *
67665910 TTTATAAAATTTTATATTTTTTTATATTTCT-ATATATTTTATAATTTTTTACTATT
1 TTTATAAAATTTAATATCTTTTTATATTTCTAATAAATTTT-TAACATTTTAAT-TT
*
67665966 TTTATAAAATTTAATA-CTTTTTACTATTTTTAATAAATTTTTAACATTTTAATTT
1 TTTATAAAATTTAATATCTTTTTA-TATTTCTAATAAATTTTTAACATTTTAATTT
*
67666021 TTTATTAAAATTCAATA
1 TTTA-TAAAATTTAATA
67666038 ATATTTATAG
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
55 12 0.20
56 41 0.67
57 8 0.13
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (55 bp):
TTTATAAAATTTAATATCTTTTTATATTTCTAATAAATTTTTAACATTTTAATTT
Found at i:67666015 original size:28 final size:29
Alignment explanation
Indices: 67665956--67666037 Score: 89
Period size: 28 Copynumber: 2.9 Consensus size: 29
67665946 TTTTATAATT
*
67665956 TTTTACTATTTTT-ATAAAATTTAATACT
1 TTTTACTATTTTTAATAAAATTTAATACA
* *
67665984 TTTTACTATTTTTAATAAATTTTTA-ACA
1 TTTTACTATTTTTAATAAAATTTAATACA
* * *
67666012 TTTTAAT-TTTTTATTAAAATTCAATA
1 TTTTACTATTTTTAATAAAATTTAATA
67666038 ATATTTATAG
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
27 13 0.30
28 22 0.50
29 9 0.20
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (29 bp):
TTTTACTATTTTTAATAAAATTTAATACA
Found at i:67666841 original size:23 final size:24
Alignment explanation
Indices: 67666805--67666855 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
67666795 TATACTAATA
* *
67666805 AAAAAAGATGATTTAATT-AATTTT
1 AAAAAAGATAATTT-ATTGAATATT
67666829 AAAAAA-ATAATTTATTGAATATT
1 AAAAAAGATAATTTATTGAATATT
67666852 AAAA
1 AAAA
67666856 TGAAGAGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 3 0.12
23 15 0.62
24 6 0.25
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (24 bp):
AAAAAAGATAATTTATTGAATATT
Found at i:67666983 original size:45 final size:45
Alignment explanation
Indices: 67666917--67667007 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
67666907 TTTTGGGAAA
67666917 AATGTTTTCCTAATTTACCAGTGTTTGTTTGACTAAAAAGGTTTT
1 AATGTTTTCCTAATTTACCAGTGTTTGTTTGACTAAAAAGGTTTT
* * *
67666962 AATGTTTTCCTGATTTTCCAGTGTTTGTTTGACTGAAAAGGTTTT
1 AATGTTTTCCTAATTTACCAGTGTTTGTTTGACTAAAAAGGTTTT
67667007 A
1 A
67667008 CAAATGGAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.24, C:0.11, G:0.18, T:0.47
Consensus pattern (45 bp):
AATGTTTTCCTAATTTACCAGTGTTTGTTTGACTAAAAAGGTTTT
Found at i:67670963 original size:23 final size:22
Alignment explanation
Indices: 67670902--67670972 Score: 56
Period size: 23 Copynumber: 3.1 Consensus size: 22
67670892 TGATCATAAT
*
67670902 TTAAATATATAAAACATAAATTTA
1 TTAAATA-ATAAAA-ATAAATTAA
*
67670926 TT-AAT-ATATATAATAAATTCAA
1 TTAAATAATA-AAAATAAATT-AA
*
67670948 TTAAATAATAAAAATATAATAAA
1 TTAAATAATAAAAATA-AATTAA
67670971 TT
1 TT
67670973 TTTAAATGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
21 10 0.26
22 5 0.13
23 15 0.39
24 8 0.21
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (22 bp):
TTAAATAATAAAAATAAATTAA
Found at i:67671099 original size:21 final size:21
Alignment explanation
Indices: 67671071--67671119 Score: 82
Period size: 20 Copynumber: 2.4 Consensus size: 21
67671061 TTATCTAAAC
*
67671071 TCAAAAAAAATAAATTA-TTT
1 TCAAAAAAAATAAATCATTTT
67671091 TCAAAAAAAATAAATCATTTT
1 TCAAAAAAAATAAATCATTTT
67671112 TCAAAAAA
1 TCAAAAAA
67671120 TATTTTATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (21 bp):
TCAAAAAAAATAAATCATTTT
Found at i:67672303 original size:19 final size:19
Alignment explanation
Indices: 67672279--67672316 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
67672269 AACCTGGGGT
67672279 AGGAAAAGAAAATATGATG
1 AGGAAAAGAAAATATGATG
67672298 AGGAAAAGAAAATATGATG
1 AGGAAAAGAAAATATGATG
67672317 TAATTGGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.26, T:0.16
Consensus pattern (19 bp):
AGGAAAAGAAAATATGATG
Found at i:67675480 original size:10 final size:10
Alignment explanation
Indices: 67675465--67675518 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
67675455 AAAAAAATTA
67675465 ATTTTTATAT
1 ATTTTTATAT
67675475 ATTTTTATAT
1 ATTTTTATAT
*
67675485 ATTCTTTAGA-
1 ATT-TTTATAT
*
67675495 AATTTTA-AT
1 ATTTTTATAT
*
67675504 TTTTTTATA-
1 ATTTTTATAT
67675513 ATTTTT
1 ATTTTT
67675519 TAAGAAAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
8 1 0.03
9 14 0.39
10 16 0.44
11 5 0.14
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:67675510 original size:29 final size:30
Alignment explanation
Indices: 67675467--67675525 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
67675457 AAAAATTAAT
67675467 TTTTATATATTTTTATATATTCTTT-AGAAA
1 TTTTATATATTTTTATA-ATTCTTTAAGAAA
* *
67675497 TTTTA-ATTTTTTTATAATTTTTTAAGAAA
1 TTTTATATATTTTTATAATTCTTTAAGAAA
67675526 ATATAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 6 0.23
29 15 0.58
30 5 0.19
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (30 bp):
TTTTATATATTTTTATAATTCTTTAAGAAA
Found at i:67675536 original size:29 final size:29
Alignment explanation
Indices: 67675476--67675536 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
67675466 TTTTTATATA
* * *
67675476 TTTTTATATATTCTTTAGAAATTTTAATT
1 TTTTTATATATTCTTTAGAAAATATAAAT
*
67675505 TTTTTATA-ATTTTTTAAGAAAATATAAAT
1 TTTTTATATATTCTTT-AGAAAATATAAAT
67675534 TTT
1 TTT
67675537 AGAATTTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (29 bp):
TTTTTATATATTCTTTAGAAAATATAAAT
Found at i:67675583 original size:17 final size:17
Alignment explanation
Indices: 67675539--67675583 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
67675529 TAAATTTTAG
67675539 AATTTTTAAAATATTTT
1 AATTTTTAAAATATTTT
* **
67675556 AAATTAAAAAATATTTT
1 AATTTTTAAAATATTTT
67675573 AATTTTTAAAA
1 AATTTTTAAAA
67675584 ATTATTATTT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTTTTAAAATATTTT
Found at i:67675684 original size:17 final size:18
Alignment explanation
Indices: 67675664--67675697 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
67675654 GAAAATATAA
67675664 AATTT-AAAAATATTTTG
1 AATTTAAAAAATATTTTG
67675681 AATTTAAAAAATATTTT
1 AATTTAAAAAATATTTT
67675698 AATATTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
AATTTAAAAAATATTTTG
Found at i:67683236 original size:5 final size:6
Alignment explanation
Indices: 67683218--67683242 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
67683208 GTCATAATCC
67683218 AATAAA AATAAA AATAAA AATAAA A
1 AATAAA AATAAA AATAAA AATAAA A
67683243 CTTTTTAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:67683341 original size:17 final size:18
Alignment explanation
Indices: 67683321--67683357 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
67683311 TAAAGTGTTC
67683321 TAATTACG-TCTTTAAAT
1 TAATTACGTTCTTTAAAT
*
67683338 TAATTACGTTTTTTAAAT
1 TAATTACGTTCTTTAAAT
67683356 TA
1 TA
67683358 TCAATGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.35, C:0.08, G:0.05, T:0.51
Consensus pattern (18 bp):
TAATTACGTTCTTTAAAT
Found at i:67688984 original size:23 final size:24
Alignment explanation
Indices: 67688940--67688987 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
67688930 TATGCCTTTG
67688940 CTGTTTTCGCTTCTTTTCTTCTGTT
1 CTGTTTTCGC-TCTTTTCTTCTGTT
*
67688965 CTGTTTTCGC-CTTTTGTTCTGTT
1 CTGTTTTCGCTCTTTTCTTCTGTT
67688988 GTCTTGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.55
25 10 0.45
ACGTcount: A:0.00, C:0.23, G:0.15, T:0.62
Consensus pattern (24 bp):
CTGTTTTCGCTCTTTTCTTCTGTT
Found at i:67694573 original size:23 final size:25
Alignment explanation
Indices: 67694543--67694593 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
67694533 AAGTGATTAA
67694543 ATAATAA-TCCA-AACAAATTAAAT
1 ATAATAATTCCACAACAAATTAAAT
* *
67694566 ATAATAATTTCACAACAATTTAAAT
1 ATAATAATTCCACAACAAATTAAAT
67694591 ATA
1 ATA
67694594 CCTAATAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 7 0.29
24 3 0.12
25 14 0.58
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (25 bp):
ATAATAATTCCACAACAAATTAAAT
Found at i:67696047 original size:20 final size:20
Alignment explanation
Indices: 67696024--67696061 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67696014 AATTCAATTA
* *
67696024 TTTCTTTAAAATTTCAAAGT
1 TTTCTTAAAAAATTCAAAGT
67696044 TTTCTTAAAAAATTCAAA
1 TTTCTTAAAAAATTCAAA
67696062 ATTTCAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.11, G:0.03, T:0.45
Consensus pattern (20 bp):
TTTCTTAAAAAATTCAAAGT
Found at i:67696066 original size:19 final size:20
Alignment explanation
Indices: 67696023--67696066 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
67696013 GAATTCAATT
* *
67696023 ATTTCTTTAAAATTTCAAAG
1 ATTTCTTAAAAAATTCAAAG
*
67696043 TTTTCTTAAAAAATTCAAA-
1 ATTTCTTAAAAAATTCAAAG
67696062 ATTTC
1 ATTTC
67696067 AATAATAGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.41, C:0.11, G:0.02, T:0.45
Consensus pattern (20 bp):
ATTTCTTAAAAAATTCAAAG
Found at i:67701609 original size:49 final size:48
Alignment explanation
Indices: 67701527--67701684 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 48
67701517 CTTACTTTGA
*
67701527 GAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
67701574 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
67701623 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
67701672 GAATGTGATAAGT
1 GAATGTGA-AAGT
67701685 CCCGAAGGGC
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 13 0.12
49 89 0.84
50 4 0.04
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (48 bp):
GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:67701858 original size:37 final size:37
Alignment explanation
Indices: 67701802--67701880 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
67701792 CCGAGCTCTA
* * *
67701802 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
67701839 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67701876 AAGAC
1 AAGAC
67701881 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67703797 original size:43 final size:43
Alignment explanation
Indices: 67703749--67703851 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
67703739 TTGGTTTTCA
67703749 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
67703792 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
67703835 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
67703852 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:67703868 original size:29 final size:29
Alignment explanation
Indices: 67703833--67703906 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
67703823 GTTGTGAGAT
* *
67703833 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
67703862 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
67703891 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67703907 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:67704340 original size:40 final size:40
Alignment explanation
Indices: 67704296--67704611 Score: 436
Period size: 40 Copynumber: 7.9 Consensus size: 40
67704286 GAGTTACTAA
*
67704296 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
67704336 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
67704376 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTAATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
67704416 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
67704456 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
67704496 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * * * *
67704536 ATCCGTGCTAA-ACCCCAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
67704575 ATCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
67704612 CGTGTATTCG
Statistics
Matches: 255, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 32 0.13
40 223 0.87
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:67704354 original size:80 final size:80
Alignment explanation
Indices: 67704217--67704596 Score: 446
Period size: 80 Copynumber: 4.8 Consensus size: 80
67704207 TCGAACGATG
** ** *
67704217 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAG-TCCCGAAGAGC
* * * *
67704278 ATTGGTGCGAGTTACTAAA
63 ATTCGTGCTAGTGA-TATA
*
67704297 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
* *
67704362 CATGCTAGTGATGTA
66 CGTGCTAGTGATATA
* * *
67704377 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTAATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
*
67704442 CGTGCTAGTGATGTA
66 CGTGCTAGTGATATA
* * *
67704457 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
67704522 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
* * * * * * * *
67704537 TCCGTGCTAA-ACCCCAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
67704597 TAATCATGCT
Statistics
Matches: 267, Mismatches: 29, Indels: 9
0.88 0.10 0.03
Matches are distributed among these distances:
79 43 0.16
80 200 0.75
81 18 0.07
82 6 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATATA
Found at i:67704434 original size:120 final size:120
Alignment explanation
Indices: 67704217--67704611 Score: 483
Period size: 120 Copynumber: 3.3 Consensus size: 120
67704207 TCGAACGATG
** ** * *
67704217 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCA
* * * * * *
67704279 TTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
64 TTCGTGCTAG-TAATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
67704337 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
* * *
67704402 CATGCTAGTAATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTAATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
67704457 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
* * * * * * *
67704522 CGTGCTAGTGATATATCCGTGCTAA-ACCCCAAGAGCATTCGTGCTGGTGTTATA
66 CGTGCTAGTAATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * * *
67704576 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
67704612 CGTGTATTCG
Statistics
Matches: 239, Mismatches: 33, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
119 53 0.22
120 163 0.68
121 17 0.07
122 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
CGTGCTAGTAATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:67708155 original size:49 final size:48
Alignment explanation
Indices: 67708073--67708230 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 48
67708063 CTTACTTTGA
*
67708073 GAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
67708120 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
67708169 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
67708218 GAATGTGATAAGT
1 GAATGTGA-AAGT
67708231 CCCGAAGGGC
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 13 0.12
49 89 0.84
50 4 0.04
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (48 bp):
GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:67708404 original size:37 final size:37
Alignment explanation
Indices: 67708348--67708426 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
67708338 CCGAGCTCTA
* * *
67708348 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
67708385 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67708422 AAGAC
1 AAGAC
67708427 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67710286 original size:18 final size:18
Alignment explanation
Indices: 67710255--67710311 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
67710245 TATTATTTTT
* *
67710255 ATATAATTTTTAAAATAA
1 ATATAATATATAAAATAA
67710273 ATATAATATATAAAA-ATA
1 ATATAATATATAAAATA-A
* *
67710291 ATAAAAAATATTAAAATAA
1 ATATAATATA-TAAAATAA
67710310 AT
1 AT
67710312 GTTTCTCAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
17 1 0.03
18 22 0.69
19 8 0.25
20 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
ATATAATATATAAAATAA
Found at i:67710290 original size:19 final size:19
Alignment explanation
Indices: 67710266--67710311 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
67710256 TATAATTTTT
* *
67710266 AAAATAAATATAATATATA
1 AAAATAAATAAAAAATATA
*
67710285 AAAAT-AATAAAAAATATT
1 AAAATAAATAAAAAATATA
67710303 AAAATAAAT
1 AAAATAAAT
67710312 GTTTCTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAATAAATAAAAAATATA
Found at i:67710428 original size:17 final size:19
Alignment explanation
Indices: 67710406--67710440 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
67710396 GAAAAATAGT
67710406 AACAAAA-TTA-ACAATAA
1 AACAAAAGTTATACAATAA
67710423 AACAAAAGTTATACAATA
1 AACAAAAGTTATACAATA
67710441 TTCAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.20
Consensus pattern (19 bp):
AACAAAAGTTATACAATAA
Found at i:67711779 original size:55 final size:49
Alignment explanation
Indices: 67711711--67711817 Score: 124
Period size: 50 Copynumber: 2.1 Consensus size: 49
67711701 AATAAATTAA
* *
67711711 AAACAAATTAAAAAAACTTCAACTTCCTAAAAATAATTGAAATAAAAATATATTT
1 AAACAAACT-AAAAAA-TCCAACTTCC--AAAA-AATTGAAATAAAAATA-ATTT
* *
67711766 AAACAAACTAAAAAATCCAACTTCCAAAAAATTTAAATAAAACTAATTT
1 AAACAAACTAAAAAATCCAACTTCCAAAAAATTGAAATAAAAATAATTT
67711815 AAA
1 AAA
67711818 AATAAATACT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
49 7 0.15
50 14 0.29
51 4 0.08
53 9 0.19
54 6 0.12
55 8 0.17
ACGTcount: A:0.60, C:0.13, G:0.01, T:0.26
Consensus pattern (49 bp):
AAACAAACTAAAAAATCCAACTTCCAAAAAATTGAAATAAAAATAATTT
Found at i:67715285 original size:31 final size:31
Alignment explanation
Indices: 67715217--67715287 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
67715207 ATATGACTTT
* *
67715217 CAATTTTTTTTTAAATTTTCAATTAAGCCCC
1 CAATTTTTTTTAAAATTGTCAATTAAGCCCC
*
67715248 CCATTTTTTTTAAAAAATTGTCAA-TAAG-CCC
1 CAATTTTTTTT--AAAATTGTCAATTAAGCCCC
67715279 CAATTTTTT
1 CAATTTTTT
67715288 AAAAATTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
31 21 0.62
32 4 0.12
33 9 0.26
ACGTcount: A:0.31, C:0.18, G:0.04, T:0.46
Consensus pattern (31 bp):
CAATTTTTTTTAAAATTGTCAATTAAGCCCC
Found at i:67720445 original size:5 final size:5
Alignment explanation
Indices: 67720435--67720459 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
67720425 AACTTTATTC
67720435 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
67720460 GAAGTGTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:67721797 original size:555 final size:554
Alignment explanation
Indices: 67720703--67721815 Score: 1915
Period size: 555 Copynumber: 2.0 Consensus size: 554
67720693 GTTATAAGAA
67720703 GTGACTTAGACATAATATATGCAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCA
1 GTGACTTAGACATAATATATGCAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCA
*
67720768 CGAGCAATAATATCACGAACAAAATGATACCGAACATCAATGTGTTTTGTTCTCTCATGAAACAT
66 CGAGCAATAATATCACGAACAAAATGATACCGAACATCAATGTGTTTTGTTCTATCATGAAACAT
*
67720833 TTGATCTTTTGTAAGGAATATTGCACTCTAACTGTCACAAAATATTGTACTGATTTGAATGTCTT
131 TTGATCTTTTGTAAGGAATATTGCACTCTAACTGTCACAAAATACTGTACTGATTTGAATGTCTT
* * *
67720898 CATTGAGTTCACAAAAGAGTCATTTCAATTGGATAACTTCTTTTCAAGCCTCAGTAATTACATGT
196 CACTGAGTTCACAAAAGAGTCATTTCAATCGGATAACTTCTTTACAAGCCTCAGTAATTACATGT
*
67720963 ACTCAACTTCAGTGGTAGATAAAGCGACTGTAATTTGCAAAGTGGCTTTCCAACTAATTGCACAA
261 ACTCAACTTCAGTGGTAGACAAAGCGACTGTAATTTGCAAAGTGGCTTTCCAACTAATTGCACAA
**
67721028 CCTTTGATTGTAAAGACATAACCTGTGAGAGATCTTCTTCTATCAAGGTCTCTAGCAAAATCAGC
326 CCTCCGATTGTAAAGACATAACCTGTGAGAGATCTTCTTCTATCAAGGTCTCTAGCAAAATCAGC
*
67721093 ATCAACATACCCAATGACTCCATCTCTAGTTCTTCCAAACTATAAACAGACATCAGTAGCACCTC
391 ATCAACATACCCAATGACTCAATCTCTAGTTCTTCCAAACTATAAACAGACATCAGTAGCACCTC
* * * *
67721158 TTAAGTATCTTAAAATCCATTGAGCTGCTTTCCAGTGTTCTTTACCAGCATTCGCCACGTATCTG
456 GTAAGTATCTTAAAATCCATTAAACTGCTTTCCAGTATTCTTTACCAGCATTCGCCACGTATCTG
* *
67721223 CTAACTGCACTGACTGCATATGATAAATCTGGAC
521 CTAACTACACTAACTGCATATGATAAATCTGGAC
* * *
67721257 GTGACTTAGACATCATATCTGTAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCA
1 GTGACTTAGACATAATATATGCAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCA
67721322 CGAGCAATAATATCACGAACAAAATGATACCGAACATCAATGTGTTTTGTTCTATCATGAAACAT
66 CGAGCAATAATATCACGAACAAAATGATACCGAACATCAATGTGTTTTGTTCTATCATGAAACAT
67721387 TTGATCTTTTGTAAGGAATATTGCACTCTAACTGTCACAAAATACTGTACTGATTTGAATGTCTT
131 TTGATCTTTTGTAAGGAATATTGCACTCTAACTGTCACAAAATACTGTACTGATTTGAATGTCTT
* *
67721452 CACTGAGTTCACAAAAGAGTCCTTTCAATCGGATAACTTCTTTACAAGCCTCAGTAATTGCCATG
196 CACTGAGTTCACAAAAGAGTCATTTCAATCGGATAACTTCTTTACAAGCCTCAGTAATT-ACATG
* * *
67721517 TACTCAGCTTCAGTGGTAGACAAAGTGACTGTAATTTGCAAAGTGGCTTTCCAACTGATTGCACA
260 TACTCAACTTCAGTGGTAGACAAAGCGACTGTAATTTGCAAAGTGGCTTTCCAACTAATTGCACA
*
67721582 ACCTCCGATTGTAAAGACATAACCTGTGAGTGATCTTCTTCTATCAAGGTCT-TCAGCAAAATCA
325 ACCTCCGATTGTAAAGACATAACCTGTGAGAGATCTTCTTCTATCAAGGTCTCT-AGCAAAATCA
* *
67721646 GCATCAACATACCCAATGACTCAATCTCTAGTTCTTCCAAACTGTAAGCAGACATCAGTAGCACC
389 GCATCAACATACCCAATGACTCAATCTCTAGTTCTTCCAAACTATAAACAGACATCAGTAGCACC
* ** *
67721711 TCGTAAGTATCTTAAAATCCATTAAATTGCTTTTTAGTATTCTTTACCGAG-ATTCGCCATGTAT
454 TCGTAAGTATCTTAAAATCCATTAAACTGCTTTCCAGTATTCTTTACC-AGCATTCGCCACGTAT
67721775 CTGCTAACTACACTAACTGCATATGATAAATCTGGAC
518 CTGCTAACTACACTAACTGCATATGATAAATCTGGAC
67721812 GTGA
1 GTGA
67721816 ACAAACCATA
Statistics
Matches: 526, Mismatches: 30, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
554 246 0.47
555 278 0.53
556 2 0.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (554 bp):
GTGACTTAGACATAATATATGCAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCA
CGAGCAATAATATCACGAACAAAATGATACCGAACATCAATGTGTTTTGTTCTATCATGAAACAT
TTGATCTTTTGTAAGGAATATTGCACTCTAACTGTCACAAAATACTGTACTGATTTGAATGTCTT
CACTGAGTTCACAAAAGAGTCATTTCAATCGGATAACTTCTTTACAAGCCTCAGTAATTACATGT
ACTCAACTTCAGTGGTAGACAAAGCGACTGTAATTTGCAAAGTGGCTTTCCAACTAATTGCACAA
CCTCCGATTGTAAAGACATAACCTGTGAGAGATCTTCTTCTATCAAGGTCTCTAGCAAAATCAGC
ATCAACATACCCAATGACTCAATCTCTAGTTCTTCCAAACTATAAACAGACATCAGTAGCACCTC
GTAAGTATCTTAAAATCCATTAAACTGCTTTCCAGTATTCTTTACCAGCATTCGCCACGTATCTG
CTAACTACACTAACTGCATATGATAAATCTGGAC
Found at i:67726101 original size:25 final size:25
Alignment explanation
Indices: 67726036--67726090 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
67726026 GAGCATTAAA
67726036 CAACTCACTAACAAAAAAAGATGTT
1 CAACTCACTAACAAAAAAAGATGTT
67726061 CAACTCACTAACAAAAAAAGATGTT
1 CAACTCACTAACAAAAAAAGATGTT
67726086 CAACT
1 CAACT
67726091 TTTCGTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.51, C:0.22, G:0.07, T:0.20
Consensus pattern (25 bp):
CAACTCACTAACAAAAAAAGATGTT
Found at i:67727137 original size:32 final size:32
Alignment explanation
Indices: 67727101--67727205 Score: 99
Period size: 37 Copynumber: 3.2 Consensus size: 32
67727091 TAATATTTTT
67727101 AATATAATTATTTTTATATTAATTTATATTAAA
1 AATATAATTATTTTTATATTAATTTATATT-AA
*
67727134 ATATGATTAAGTTATTTTT-TATTAAATTATATTTTAA
1 A-AT-A-TAA-TTATTTTTATATT-AATT-TATATTAA
* *
67727171 AAT-TAAATA-TTTTATATTAAATTATATTAA
1 AATATAATTATTTTTATATTAATTTATATTAA
67727201 AATAT
1 AATAT
67727206 TTTAAATATT
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
30 10 0.17
31 8 0.13
32 6 0.10
33 4 0.07
34 2 0.03
35 1 0.02
36 9 0.15
37 15 0.25
38 5 0.08
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (32 bp):
AATATAATTATTTTTATATTAATTTATATTAA
Found at i:67727191 original size:14 final size:15
Alignment explanation
Indices: 67727162--67727203 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
67727152 TTATTAAATT
67727162 ATATTTTAAAATTAA
1 ATATTTTAAAATTAA
*
67727177 ATATTTT-ATATTAA
1 ATATTTTAAAATTAA
*
67727191 ATTATATTAAAAT
1 A-TATTTTAAAAT
67727204 ATTTTAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 7 0.32
15 12 0.55
16 3 0.14
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATTTTAAAATTAA
Found at i:67728888 original size:30 final size:30
Alignment explanation
Indices: 67728854--67728916 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
67728844 ATTTATTTTA
67728854 TTGTTAATTTTCATATTATTTTA-AAGGCAT
1 TTGTTAATTTTCATATTATTTTAGAA-GCAT
**
67728884 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTCATATTATTTTAGAAGCAT
67728914 TTG
1 TTG
67728917 CTTTTTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTCATATTATTTTAGAAGCAT
Found at i:67731719 original size:22 final size:20
Alignment explanation
Indices: 67731689--67731731 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
67731679 AAACCCTAAA
67731689 TTTTCCTTTTCTTCTCTTGCCC
1 TTTTCC-TTTCTT-TCTTGCCC
* *
67731711 TTTTTCTTTCTTTCTTTCCC
1 TTTTCCTTTCTTTCTTGCCC
67731731 T
1 T
67731732 GCTTTGTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.42
21 6 0.32
22 5 0.26
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTCCTTTCTTTCTTGCCC
Found at i:67734137 original size:22 final size:21
Alignment explanation
Indices: 67734088--67734129 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
67734078 GATTATTTGA
*
67734088 ATTGAATTGATTATTGATTAT
1 ATTGAATTGATTATTGAATAT
67734109 ATTGAATTGATT-TATGAATAT
1 ATTGAATTGATTAT-TGAATAT
67734130 GTGTGAATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (21 bp):
ATTGAATTGATTATTGAATAT
Found at i:67734310 original size:16 final size:16
Alignment explanation
Indices: 67734289--67734322 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
67734279 ATATATAGTT
67734289 AATTAATT-AAAATATG
1 AATTAATTGAAAAT-TG
67734305 AATTAATTGAAAATTG
1 AATTAATTGAAAATTG
67734321 AA
1 AA
67734323 AAGTGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (16 bp):
AATTAATTGAAAATTG
Found at i:67734536 original size:44 final size:45
Alignment explanation
Indices: 67734445--67734554 Score: 150
Period size: 44 Copynumber: 2.5 Consensus size: 45
67734435 CGACTACTGT
* * *
67734445 TACTGTTACCGTTACTATTACCGATTCTGCACTTTGTGTGTCAAA
1 TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTCAAA
* * **
67734490 TACTGTTACTGTTACCGTTATC-ATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTCAAA
67734534 TACTGTTACTGTTACTGTTAC
1 TACTGTTACTGTTACTGTTAC
67734555 TGTTCCGGAT
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
44 38 0.68
45 18 0.32
ACGTcount: A:0.21, C:0.20, G:0.16, T:0.43
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTCAAA
Found at i:67734545 original size:6 final size:6
Alignment explanation
Indices: 67734534--67734558 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
67734524 GTGTGTTGAA
67734534 TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT T
67734559 CCGGATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TACTGT
Found at i:67735171 original size:16 final size:15
Alignment explanation
Indices: 67735145--67735179 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
67735135 TGATGTGAAT
67735145 AATATAAAATATTAA
1 AATATAAAATATTAA
*
67735160 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
67735176 AATA
1 AATA
67735180 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:67735351 original size:20 final size:20
Alignment explanation
Indices: 67735294--67735353 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
67735284 AATACTACAT
67735294 AAATATGTACA-AATATAAA
1 AAATATGTACATAATATAAA
** *
67735313 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
67735336 AAATATGTACATAATATA
1 AAATATGTACATAATATA
67735354 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 1 0.03
23 15 0.48
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:67735438 original size:25 final size:25
Alignment explanation
Indices: 67735330--67735520 Score: 116
Period size: 25 Copynumber: 8.0 Consensus size: 25
67735320 TACGTGATAA
* *
67735330 TATTAAAAATATGTACATAATATAG
1 TATTAAAGATATATACATAATATAG
* * * *
67735355 TGTAAAAAATACATACATAATATA-
1 TATTAAAGATATATACATAATATAG
* *
67735379 -ATTAAA-ATATATACATAAGATAA
1 TATTAAAGATATATACATAATATAG
*
67735402 CATGTAAA-ATATAT--ATAATATAG
1 TAT-TAAAGATATATACATAATATAG
*
67735425 TATTAAAGATATATACATAAAATAG
1 TATTAAAGATATATACATAATATAG
* * *
67735450 TA-TAATATATATCTACGTAATATAG
1 TATTAA-AGATATATACATAATATAG
* * *
67735475 AATT-TAGA-ATATACCTAATATA-
1 TATTAAAGATATATACATAATATAG
* *
67735497 T-TAAAAGAATATATATATAATATA
1 TATTAAAG-ATATATACATAATATA
67735521 ATATAATATT
Statistics
Matches: 129, Mismatches: 26, Indels: 23
0.72 0.15 0.13
Matches are distributed among these distances:
21 1 0.01
22 20 0.16
23 32 0.25
24 19 0.15
25 56 0.43
26 1 0.01
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (25 bp):
TATTAAAGATATATACATAATATAG
Found at i:67736040 original size:30 final size:30
Alignment explanation
Indices: 67736006--67736121 Score: 196
Period size: 30 Copynumber: 3.9 Consensus size: 30
67735996 GTGGTGGTGG
* *
67736006 AGTGTGGCTAGTGGAGTAGGTAGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
67736036 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
* *
67736066 AGTGTGGTTAGTGGAGTTGGTGGTGAAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
67736096 AGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGTGGAGTTGGTGGTGG
67736122 CAAAGGCTAG
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 80 1.00
ACGTcount: A:0.18, C:0.05, G:0.49, T:0.28
Consensus pattern (30 bp):
AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:67736081 original size:18 final size:17
Alignment explanation
Indices: 67736024--67736081 Score: 54
Period size: 18 Copynumber: 3.6 Consensus size: 17
67736014 TAGTGGAGTA
67736024 GGTAGTGGAGCAAGTGT
1 GGTAGTGGAGCAAGTGT
67736041 GGCTAGT-G-G--AGT-T
1 GG-TAGTGGAGCAAGTGT
*
67736054 GGTGGTGGAGCAAGTGT
1 GGTAGTGGAGCAAGTGT
67736071 GGTTAGTGGAG
1 GG-TAGTGGAG
67736082 TTGGTGGTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 13
0.68 0.04 0.28
Matches are distributed among these distances:
12 3 0.09
13 4 0.12
14 4 0.12
16 4 0.12
17 6 0.19
18 11 0.34
ACGTcount: A:0.19, C:0.05, G:0.50, T:0.26
Consensus pattern (17 bp):
GGTAGTGGAGCAAGTGT
Found at i:67736991 original size:89 final size:90
Alignment explanation
Indices: 67736829--67736996 Score: 239
Period size: 89 Copynumber: 1.9 Consensus size: 90
67736819 GAGTTGATTT
* * * **
67736829 TTGAAAAGCAGAAATTGGAAACGCCTCAGCGTGTGACCCGAGGCTTAACTCACCTATTGCAATAT
1 TTGAAAAGCAGAAATTGAAAACACCTCAGCGTGT-ACCCGAGGCTCAACTCACCTATCACAATAT
67736894 GAGTTGATTCTTTTGAAATGTAAAAA
65 GAGTTGATTCTTTTGAAATGTAAAAA
* * *
67736920 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGT-CCCGAGGCTCAACTCACCTCTCACAATGTG
1 TTGAAAAGCAGAAATTGAAAACACCTCAGCGTGTACCCGAGGCTCAACTCACCTATCACAATATG
*
67736984 AGTTGATTTTTTT
66 AGTTGATTCTTTT
67736997 TTTATAAAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
89 37 0.54
91 31 0.46
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (90 bp):
TTGAAAAGCAGAAATTGAAAACACCTCAGCGTGTACCCGAGGCTCAACTCACCTATCACAATATG
AGTTGATTCTTTTGAAATGTAAAAA
Found at i:67737215 original size:75 final size:73
Alignment explanation
Indices: 67737088--67737475 Score: 486
Period size: 71 Copynumber: 5.3 Consensus size: 73
67737078 AACACAGAAA
* * * * *
67737088 TTGAAGAACAAAAATGGAAAACACCTCAAC--GTCTTGAGGTTTAACTCACCTCTCGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
67737151 GCTGATTTTT
65 GTTGA-TTTT
67737161 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
67737226 GTTGA-TTT
65 GTTGATTTT
* * ** *
67737234 TTGACAAACAAAAATTGAAATTACCTC-A-GCATCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
67737297 GCTAATTTTT
65 GTTGA-TTTT
67737307 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
67737372 GTTGA--TT
65 GTTGATTTT
* * * *
67737379 TTGACAAACA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
67737443 GTTGATGTTT
65 GTTGAT-TTT
67737453 TTGAAAAACAGAAATTGAAAATA
1 TTG-AAAACAGAAATTGAAAATA
67737476 GAAATGGAAA
Statistics
Matches: 275, Mismatches: 25, Indels: 28
0.84 0.08 0.09
Matches are distributed among these distances:
71 90 0.33
72 13 0.05
73 77 0.28
74 13 0.05
75 82 0.30
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:67737358 original size:146 final size:145
Alignment explanation
Indices: 67737094--67737475 Score: 613
Period size: 146 Copynumber: 2.6 Consensus size: 145
67737084 GAAATTGAAG
* ** * *
67737094 AACAAAAATGGAAAACACCTCAACGTCTTGAGGTTTAACTCACCTCTCGCAATATGAGCTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
67737159 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
67737224 GAGTTGATTTTTGACA
131 GAGTTGA-TTTTGACA
* *
67737240 AACAAAAATTGAAATTACCTCAGCATCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTAATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
67737305 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
67737370 GAGTTGATTTTGACA
131 GAGTTGATTTTGACA
* * * *
67737385 AAC-AAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGAT
* *
67737449 GTTTTTGAAAAACAGAAATTGAAAATA
64 TTTTTTGAAAGACAGAAATTGAAAATA
67737476 GAAATGGAAA
Statistics
Matches: 219, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
144 20 0.09
145 11 0.05
146 188 0.86
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (145 bp):
AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTGACA
Found at i:67737529 original size:86 final size:87
Alignment explanation
Indices: 67737400--67737559 Score: 225
Period size: 86 Copynumber: 1.8 Consensus size: 87
67737390 AATTGAAATT
*
67737400 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATGTTTTTGAAAA-ACAG
1 ACCTCAGCG-GTCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGAT-TTTTTGAAAACACAG
*
67737464 AAATTGAAAATAGAAATGGAAAAC
64 AAATTAAAAATAGAAATGGAAAAC
* * * * *
67737488 ACCTCAGC-GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAACACATAA
1 ACCTCAGCGGTCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTGAAAACACAGAA
67737552 ATTAAAAA
66 ATTAAAAA
67737560 AAAAAGAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
85 9 0.14
86 47 0.73
88 8 0.12
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (87 bp):
ACCTCAGCGGTCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTGAAAACACAGAA
ATTAAAAATAGAAATGGAAAAC
Found at i:67737839 original size:70 final size:71
Alignment explanation
Indices: 67737611--67737930 Score: 445
Period size: 70 Copynumber: 4.5 Consensus size: 71
67737601 TGGCCCGAGA
*
67737611 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGA-T-TTTTGAAAA-CAAAAATTGAAAATACCTCAGCG
**
67737676 TGTCCCAAGG
63 -GTCCTGAGG
* *
67737686 CTCAACTCACCTCT--CAATATGAGTTGATTTTTGAAAA-AAGAATTGAAAATATCTCAGCGTGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAAATACCTCAGCG-GT
67737748 CCTGAGG
65 CCTGAGG
67737755 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTG-AAATACCTCAGC-GT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAAAAATTGAAAATACCTCAGCGGT
*
67737818 CTTGAGG
65 CCTGAGG
*
67737825 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAC-AAAATTGAAAATACCTCAACGTG
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAAAAATTGAAAATACCTCAGCG-G
*
67737889 TCTTGAGG
64 TCCTGAGG
*
67737897 CTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
67737931 TTTGAAACAT
Statistics
Matches: 227, Mismatches: 10, Indels: 20
0.88 0.04 0.08
Matches are distributed among these distances:
69 48 0.21
70 52 0.23
71 41 0.18
72 52 0.23
73 20 0.09
75 14 0.06
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (71 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAAATACCTCAGCGGTC
CTGAGG
Found at i:67737874 original size:142 final size:141
Alignment explanation
Indices: 67737611--67737930 Score: 468
Period size: 142 Copynumber: 2.2 Consensus size: 141
67737601 TGGCCCGAGA
*
67737611 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGA-T-TTTTGAAAAGCAAAAATTGAAAATACCTCAGCG
*
67737676 TGTCCCAAGGCTCAACTCACCTCTCAATATGAGTTGATTTTTGAAAAAAGAATTGAAAATATCTC
64 -GTCCCAAGGCTCAACTCACCTCTCAATATGAGTTGATTTTTGAAAAAAGAATTGAAAATACCTC
*
67737741 AGCGTGTCCTGAGG
128 AACGTGTCCTGAGG
67737755 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAA-CAAAAATTG-AAATACCTCAGC-G
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAAGCAAAAATTGAAAATACCTCAGCGG
***
67737817 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAA-AATTGAAAATACC
65 TCCCAAGGCTCAACTCACCTCT--CAATATGAGTTGA-TTTTTGAAAA-AAGAATTGAAAATACC
*
67737881 TCAACGTGTCTTGAGG
126 TCAACGTGTCCTGAGG
*
67737897 CTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
67737931 TTTGAAACAT
Statistics
Matches: 163, Mismatches: 8, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
139 20 0.12
141 25 0.15
142 83 0.51
143 6 0.04
144 29 0.18
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (141 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAAAAATTGAAAATACCTCAGCGGT
CCCAAGGCTCAACTCACCTCTCAATATGAGTTGATTTTTGAAAAAAGAATTGAAAATACCTCAAC
GTGTCCTGAGG
Found at i:67737928 original size:72 final size:72
Alignment explanation
Indices: 67737611--67737931 Score: 451
Period size: 72 Copynumber: 4.5 Consensus size: 72
67737601 TGGCCCGAGA
*
67737611 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAAA-CA-AAATTGAAAATACCTCAACG
**
67737676 TGTCCCAAGG
63 TGTCCTGAGG
* *
67737686 CTCAACTCACCTCT--CAATATGAGTTGA-TTTTTGAAAA-AAGAATTGAAAATATCTCAGCGTG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAA-AATTGAAAATACCTCAACGTG
67737747 TCCTGAGG
65 TCCTGAGG
*
67737755 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACAAAAATTG-AAATACCTC-A-GC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAAC-AAAATTGAAAATACCTCAACGT
*
67737816 GTCTTGAGG
64 GTCCTGAGG
67737825 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAATTGAAAATACCTCAACGTGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAATTGAAAATACCTCAACGTGT
*
67737890 CTTGAGG
66 CCTGAGG
*
67737897 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
67737932 TTGAAACATA
Statistics
Matches: 227, Mismatches: 9, Indels: 23
0.88 0.03 0.09
Matches are distributed among these distances:
68 1 0.00
69 48 0.21
70 51 0.22
71 37 0.16
72 56 0.25
73 18 0.08
74 2 0.01
75 14 0.06
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.31
Consensus pattern (72 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAATTGAAAATACCTCAACGTGT
CCTGAGG
Found at i:67738156 original size:14 final size:13
Alignment explanation
Indices: 67738120--67738164 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
67738110 TTGATTTTTG
67738120 AAAAACAGAAATT
1 AAAAACAGAAATT
**
67738133 AAAAGTAGAAATT
1 AAAAACAGAAATT
67738146 GAAAAACAGAAATT
1 -AAAAACAGAAATT
67738160 AAAAA
1 AAAAA
67738165 TACCTCGGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:67738179 original size:100 final size:101
Alignment explanation
Indices: 67737948--67738235 Score: 397
Period size: 99 Copynumber: 2.9 Consensus size: 101
67737938 CATAAATTAA
* * *
67737948 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTTACCTCTCGCAATATGAGA
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
67738012 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
* *
67738047 AAAAATAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAAAATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
67738112 GATTTTTGAAAAACAGAAATT-AAAAGTAGAAATTG
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
* * *
67738147 AAAAACAGAAATTAAAAATACCTCGGCGTGCCC-GAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
67738211 GATTTTTGAAAAGCATAAATTGAAA
66 GATTTTTGAAAAGCAGAAATTGAAA
67738236 TTACCTCAGC
Statistics
Matches: 167, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
99 108 0.65
100 44 0.26
101 15 0.09
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
Found at i:67738241 original size:72 final size:74
Alignment explanation
Indices: 67738144--67738310 Score: 257
Period size: 73 Copynumber: 2.3 Consensus size: 74
67738134 AAAGTAGAAA
* * * * *
67738144 TTGAAAAACAGAAATTAAAAATACCTCGGCGTG-CCCGAGGCTCAGCTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
67738208 GTTGA-TTT
66 GTTGATTTT
* *
67738216 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
67738281 GTTGATTTT
66 GTTGATTTT
67738290 TTGAAAAGCATAAATTGAAAA
1 TTGAAAAGCATAAATTGAAAA
67738311 AACGGAAATT
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
72 28 0.33
73 34 0.40
74 23 0.27
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:67745389 original size:16 final size:15
Alignment explanation
Indices: 67745363--67745397 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
67745353 TGATGTGAAT
67745363 AATATAAAATATTAA
1 AATATAAAATATTAA
*
67745378 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
67745394 AATA
1 AATA
67745398 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:67745565 original size:20 final size:20
Alignment explanation
Indices: 67745508--67745567 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
67745498 AATACTACAT
67745508 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
67745527 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
67745550 AAATATGTACATAATATA
1 AAATATGTACATAATATA
67745568 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:67745663 original size:25 final size:25
Alignment explanation
Indices: 67745544--67745736 Score: 126
Period size: 25 Copynumber: 7.5 Consensus size: 25
67745534 TACGTGATAA
*
67745544 TATTAAAAATATGTACATAATATAG
1 TATTAAAAATATATACATAATATAG
* * *
67745569 TGTAAAAAATACATACATAATATA-
1 TATTAAAAATATATACATAATATAG
* *
67745593 -ATT-AAAATATATACATAAGATAA
1 TATTAAAAATATATACATAATATAG
* *
67745616 CATGTAAATATATATATAAATAATATAG
1 TAT-TAAA-A-ATATATACATAATATAG
* *
67745644 TATTAAAGATATATACATAAAATAG
1 TATTAAAAATATATACATAATATAG
* *
67745669 TA-T-AATATATATACGTAATATAG
1 TATTAAAAATATATACATAATATAG
* * *
67745692 AATTTAGAATATACCTATATATATAATATAA
1 TA-TTA-AA-A-A--TATATACATAATATAG
67745723 TATTAAGAAATATA
1 TATTAA-AAATATA
67745737 ATAATAACAA
Statistics
Matches: 129, Mismatches: 24, Indels: 29
0.71 0.13 0.16
Matches are distributed among these distances:
22 17 0.13
23 19 0.15
24 3 0.02
25 39 0.30
26 6 0.05
27 7 0.05
28 17 0.13
29 3 0.02
30 4 0.03
31 14 0.11
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (25 bp):
TATTAAAAATATATACATAATATAG
Found at i:67746304 original size:32 final size:30
Alignment explanation
Indices: 67746221--67746338 Score: 182
Period size: 30 Copynumber: 3.9 Consensus size: 30
67746211 GTGGTGGTGG
* * *
67746221 AGTGTGGCTAGTAGAGTAGGTAGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
67746251 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
*
67746281 AGTGTGGCTAGTGGGGAGTTGGTGGTGAAGCA
1 AGTGTGGCTAGT--GGAGTTGGTGGTGGAGCA
67746313 AGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGTGGAGTTGGTGGTGG
67746339 CAAAGGCTAG
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
30 52 0.64
32 29 0.36
ACGTcount: A:0.19, C:0.06, G:0.49, T:0.26
Consensus pattern (30 bp):
AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:67746768 original size:18 final size:18
Alignment explanation
Indices: 67746717--67746900 Score: 117
Period size: 18 Copynumber: 10.2 Consensus size: 18
67746707 TTATTATTGA
*
67746717 ATAATTGACTGTTACCGG
1 ATAATTGACTGTTACTGG
67746735 ATAATTGACTGTTACTGG
1 ATAATTGACTGTTACTGG
*
67746753 AT-ATTAGACTGTTACTGA
1 ATAATT-GACTGTTACTGG
* * * *
67746771 ATAACTGAATATTACTGA
1 ATAATTGACTGTTACTGG
* *
67746789 ATAATTGA-TCATTACTGA
1 ATAATTGACT-GTTACTGG
* * * * *
67746807 ATAACTGATTGTCATTGA
1 ATAATTGACTGTTACTGG
*
67746825 ATGAA-TGACTGTTACTGA
1 AT-AATTGACTGTTACTGG
* * *
67746843 ATAACTTAATTGTTACTGA
1 ATAA-TTGACTGTTACTGG
* *
67746862 AT-ATCTGA-TTTTACTGA
1 ATAAT-TGACTGTTACTGG
67746879 ATAATTGACTGTTACTGG
1 ATAATTGACTGTTACTGG
67746897 ATAA
1 ATAA
67746901 CCGATCAATT
Statistics
Matches: 137, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
17 20 0.15
18 99 0.72
19 18 0.13
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.38
Consensus pattern (18 bp):
ATAATTGACTGTTACTGG
Found at i:67746786 original size:36 final size:36
Alignment explanation
Indices: 67746698--67746900 Score: 164
Period size: 36 Copynumber: 5.6 Consensus size: 36
67746688 AAAGATATGA
* * * *
67746698 AATAACTGATTATTATTGAATAATTGACTGTTACCG
1 AATAACTGAATGTTACTGAATAATTGACTGTTACTG
* * * *
67746734 GATAATTGACTGTTACTGGAT-ATTAGACTGTTACTG
1 AATAACTGAATGTTACTGAATAATT-GACTGTTACTG
* *
67746770 AATAACTGAATATTACTGAATAATTGA-TCATTACTG
1 AATAACTGAATGTTACTGAATAATTGACT-GTTACTG
* * *
67746806 AATAACTGATTGTCATTGAATGAA-TGACTGTTACTG
1 AATAACTGAATGTTACTGAAT-AATTGACTGTTACTG
* *
67746842 AATAACTTAATTGTTACTGAAT-ATCTGA-TTTTACTG
1 AATAACTGAA-TGTTACTGAATAAT-TGACTGTTACTG
* * *
67746878 AATAATTGACTGTTACTGGATAA
1 AATAACTGAATGTTACTGAATAA
67746901 CCGATCAATT
Statistics
Matches: 131, Mismatches: 27, Indels: 18
0.74 0.15 0.10
Matches are distributed among these distances:
35 15 0.11
36 98 0.75
37 18 0.14
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (36 bp):
AATAACTGAATGTTACTGAATAATTGACTGTTACTG
Found at i:67748537 original size:24 final size:27
Alignment explanation
Indices: 67748488--67748557 Score: 76
Period size: 26 Copynumber: 2.6 Consensus size: 27
67748478 TAATTATAAT
*
67748488 AATAATAGTAATAATAGTTAAGTAGG-A
1 AATAATAATAAT-ATAGTTAAGTAGGAA
67748515 AATAATAATAATATA-TTAA-TAGGACA
1 AATAATAATAATATAGTTAAGTAGGA-A
67748541 AATAAT-ATAATAATAGT
1 AATAATAATAAT-ATAGT
67748558 GATAGTACTA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
24 4 0.11
25 9 0.24
26 13 0.34
27 12 0.32
ACGTcount: A:0.56, C:0.01, G:0.11, T:0.31
Consensus pattern (27 bp):
AATAATAATAATATAGTTAAGTAGGAA
Found at i:67748692 original size:21 final size:21
Alignment explanation
Indices: 67748653--67748696 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 21
67748643 AATAAACGTG
67748653 ATAGTAAAATACCATAATAATA
1 ATAGTAAAATA-CATAATAATA
67748675 ATAGCTAAAATA-ATAATAATA
1 ATAG-TAAAATACATAATAATA
67748696 A
1 A
67748697 CAATATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 10 0.48
22 4 0.19
23 7 0.33
ACGTcount: A:0.61, C:0.07, G:0.05, T:0.27
Consensus pattern (21 bp):
ATAGTAAAATACATAATAATA
Found at i:67748857 original size:3 final size:3
Alignment explanation
Indices: 67748842--67748923 Score: 85
Period size: 3 Copynumber: 26.7 Consensus size: 3
67748832 TAATCATGCA
* * *
67748842 AAT AAT GAT AAT AAT AACA AAT AAC AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
67748888 AAT AAT AAT GAA- AAT AAT AGAA AAT AAT AAA AAT AA
1 AAT AAT AAT -AAT AAT AAT A-AT AAT AAT AAT AAT AA
67748924 ATGCACTTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
2 2 0.03
3 57 0.88
4 6 0.09
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:67749001 original size:13 final size:12
Alignment explanation
Indices: 67748961--67749013 Score: 54
Period size: 13 Copynumber: 4.3 Consensus size: 12
67748951 TAGTAATAGT
*
67748961 TAATAA-AACAA
1 TAATAATAAAAA
*
67748972 TAATAATAAATA
1 TAATAATAAAAA
*
67748984 TAATAAGAGAAAA
1 TAATAATA-AAAA
67748997 TAATAATAAAAAA
1 TAATAAT-AAAAA
67749010 TAAT
1 TAAT
67749014 TATTTTGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
11 6 0.18
12 10 0.29
13 17 0.50
14 1 0.03
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.25
Consensus pattern (12 bp):
TAATAATAAAAA
Found at i:67749683 original size:22 final size:22
Alignment explanation
Indices: 67749658--67749738 Score: 79
Period size: 22 Copynumber: 4.0 Consensus size: 22
67749648 ATTCGAAAGT
67749658 AAGAAAGAAATAAAATAAAATC
1 AAGAAAGAAATAAAATAAAATC
*
67749680 AAGAAAGAAAT--AATAAGA--
1 AAGAAAGAAATAAAATAAAATC
* *
67749698 AAGAAA-TAA-AATA-AAA-TC
1 AAGAAAGAAATAAAATAAAATC
67749716 AAGAAAGAAATAAAATAAAATC
1 AAGAAAGAAATAAAATAAAATC
67749738 A
1 A
67749739 CCTTAGGCTT
Statistics
Matches: 45, Mismatches: 6, Indels: 16
0.67 0.09 0.24
Matches are distributed among these distances:
17 4 0.09
18 13 0.29
19 2 0.04
20 9 0.20
21 3 0.07
22 14 0.31
ACGTcount: A:0.73, C:0.04, G:0.10, T:0.14
Consensus pattern (22 bp):
AAGAAAGAAATAAAATAAAATC
Found at i:67749697 original size:36 final size:36
Alignment explanation
Indices: 67749657--67749728 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
67749647 GATTCGAAAG
67749657 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
1 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
67749693 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
1 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
67749729 AATAAAATCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.72, C:0.03, G:0.11, T:0.14
Consensus pattern (36 bp):
TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
Found at i:67749699 original size:14 final size:14
Alignment explanation
Indices: 67749680--67749706 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
67749670 AAATAAAATC
67749680 AAGAAAGAAATAAT
1 AAGAAAGAAATAAT
67749694 AAGAAAGAAATAA
1 AAGAAAGAAATAA
67749707 AATAAAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (14 bp):
AAGAAAGAAATAAT
Found at i:67755935 original size:14 final size:13
Alignment explanation
Indices: 67755916--67755949 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
67755906 CCCCTCCCCC
67755916 CCCCCCCCCACCA
1 CCCCCCCCCACCA
*
67755929 CCACCCCCCCAGCA
1 CC-CCCCCCCACCA
67755943 CCCCCCC
1 CCCCCCC
67755950 AAAAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.15, C:0.82, G:0.03, T:0.00
Consensus pattern (13 bp):
CCCCCCCCCACCA
Found at i:67760535 original size:18 final size:18
Alignment explanation
Indices: 67760512--67760565 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
67760502 ACAAGTGGTG
67760512 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
67760530 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
67760542 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
67760560 GTGGAG
1 GTGGAG
67760566 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:67760548 original size:30 final size:30
Alignment explanation
Indices: 67760507--67760605 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
67760497 TAGGTACAAG
67760507 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
67760537 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
67760567 TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
67760597 TGGTGGTGG
1 TGGTGGTGG
67760606 CAAAGGCTAG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.17, C:0.06, G:0.49, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:67760595 original size:18 final size:17
Alignment explanation
Indices: 67760512--67760595 Score: 53
Period size: 18 Copynumber: 5.4 Consensus size: 17
67760502 ACAAGTGGTG
67760512 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAA-TGTGGCTA
*
67760530 GTGGAG---T-AGG-TA
1 GTGGAGCAATGTGGCTA
67760542 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAA-TGTGGCTA
*
67760560 GTGGAG---T-TGG-TG
1 GTGGAGCAATGTGGCTA
67760572 GTGGAGCAATTGTGGCTA
1 GTGGAGCAA-TGTGGCTA
67760590 GTGGAG
1 GTGGAG
67760596 TTGGTGGTGG
Statistics
Matches: 50, Mismatches: 4, Indels: 24
0.64 0.05 0.31
Matches are distributed among these distances:
12 15 0.30
13 5 0.10
14 2 0.04
16 2 0.04
17 5 0.10
18 21 0.42
ACGTcount: A:0.20, C:0.07, G:0.48, T:0.25
Consensus pattern (17 bp):
GTGGAGCAATGTGGCTA
Found at i:67761532 original size:94 final size:92
Alignment explanation
Indices: 67761407--67761856 Score: 417
Period size: 94 Copynumber: 4.9 Consensus size: 92
67761397 AAAACATATT
* ** * *
67761407 TTGAAAATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTG
1 TTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
67761471 CAAAGCATAAATTGAAAAAAAAAACATCAA
66 CAAA-CATAAATTGAAAAAAAAAA-AT-AA
*
67761501 TTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTTT
1 TTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
*
67761566 GACAAACATAAATTGAAAAAAAAAAAGAAA
65 G-CAAACATAAATTGAAAAAAAAAAA-TAA
* *
67761596 TTGAAAATACCTCAGCGTGT--CCTGAGGCTGAACTCACCTCTCGCAATATGAATTGATTTTTTT
1 TTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
* * *
67761659 AGAAAAACA-AAATTTG-AAAAACAGAAT--
65 -G-CAAACATAAA-TTGAAAAAAAAAAATAA
* * * *
67761686 TTGAAAATACCTCAGTGTGTGA-GTCAAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTT
1 TTGAAAATACCTCAGCGTGTGACCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* * * *
67761750 TGAAACACAGAAATTG--AAGAACAAA-AA
64 TGCAA-ACATAAATTGAAAAAAAAAAATAA
* * * * *
67761777 TGGAAAACACCTCAGC--GT--CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
1 TTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
* *
67761838 GAAAGACAGAAATTGAAAA
65 GCAA-ACATAAATTGAAAA
67761857 TACCTCAACA
Statistics
Matches: 307, Mismatches: 33, Indels: 37
0.81 0.09 0.10
Matches are distributed among these distances:
87 50 0.16
88 1 0.00
89 4 0.01
90 27 0.09
91 21 0.07
92 39 0.13
93 51 0.17
94 62 0.20
95 23 0.07
96 25 0.08
97 4 0.01
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.27
Consensus pattern (92 bp):
TTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
CAAACATAAATTGAAAAAAAAAAATAA
Found at i:67761692 original size:13 final size:14
Alignment explanation
Indices: 67761660--67761692 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
67761650 GATTTTTTTA
67761660 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
67761674 GAAAAACAGAATTT
1 GAAAAACAAAATTT
67761688 GAAAA
1 GAAAA
67761693 TACCTCAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:67761718 original size:185 final size:178
Alignment explanation
Indices: 67761432--67761856 Score: 464
Period size: 185 Copynumber: 2.3 Consensus size: 178
67761422 TATGTGACCC
* ** * * * * *
67761432 GAGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGCATAAATTGAAAAAAAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAACTGATTTTTTTGAAAAACAGAAATTG-AAAAACAGA
* * *
67761495 CATCAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTTAT
65 -AT---TTGAAAATACCTCAGCGTGTGACCTAAGGCTCAACTCACCACTCGCAATATGAGTTGAT
* * *
67761560 TTTTTTGACAA-ACATAAATTGAAAAAAAAAAAGAAATTGAAAATACCTCAGCGTGTCCT
126 TTTTTTGA-AACACAGAAATTG---AAAAAAAA-AAATGGAAAACACCTCAGC--GTCCT
* *
67761619 GAGGCTGAACTCACCTCTCGCAATATGAATTGATTTTTTTAGAAAAACA-AAATTTGAAAAACAG
1 GAGGCTCAACTCACCTCTCGCAATATGAACTGATTTTTTT-GAAAAACAGAAA-TTGAAAAACAG
* *
67761683 AATTTGAAAATACCTCAGTGTGTGA-GTCAAGGCTCAACTCACCACTCGCAATATGAGTTGATTT
64 AATTTGAAAATACCTCAGCGTGTGACCT-AAGGCTCAACTCACCACTCGCAATATGAGTTGATTT
* * *
67761747 TTTTGAAACACAGAAATTGAAGAACAAAAATGGAAAACACCTCAGCGTCTT
128 TTTTGAAACACAGAAATTGAAAAAAAAAAATGGAAAACACCTCAGCGTCCT
* * *
67761798 GAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAACTGATTTTTTTGAAAAACAGAAATTGAAAA
67761857 TACCTCAACA
Statistics
Matches: 208, Mismatches: 23, Indels: 23
0.82 0.09 0.09
Matches are distributed among these distances:
178 14 0.07
179 43 0.21
181 17 0.08
182 6 0.03
184 3 0.01
185 69 0.33
187 30 0.14
188 2 0.01
189 15 0.07
190 9 0.04
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.27
Consensus pattern (178 bp):
GAGGCTCAACTCACCTCTCGCAATATGAACTGATTTTTTTGAAAAACAGAAATTGAAAAACAGAA
TTTGAAAATACCTCAGCGTGTGACCTAAGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTT
TGAAACACAGAAATTGAAAAAAAAAAATGGAAAACACCTCAGCGTCCT
Found at i:67761832 original size:87 final size:86
Alignment explanation
Indices: 67761346--67761856 Score: 415
Period size: 87 Copynumber: 5.7 Consensus size: 86
67761336 ACGTGAGCCA
* * * **
67761346 AGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT-AAAACA-AAATATGTAAAACATATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAAT-TGAAAAACAAAAA
* * **
67761407 TTGAAAATACCTCGGTATGTGACCCG
65 TTGAAAATACCTC---A-GCGTCTTG
* * * *
67761433 AGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGCATAAATTGAAAAAAAAAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTG--AAAAACAA-
*
67761496 ATCAATTGAAAATACCTCAGCGTGTGACCTG
62 A--AATTGAAAATACCTCAGC--GT--CTTG
* * *
67761527 AGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTTTGACAAACATAAATTGAAAAAAAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAGAAATTG---AAAAACAA
*
67761592 GAAATTGAAAATACCTCAGCGTGTCCTG
62 -AAATTGAAAATACCTCAGC--GTCTTG
* * *
67761620 AGGCTGAACTCACCTCTCGCAATATGAATTGATTTTTTTAGAAAAACA-AAATTTGAAAAACAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-G-AAAACAGAAA-TTGAAAAACAAA
* * * *
67761684 ATTTGAAAATACCTCAGTGTGTGAGTCA
63 AATTGAAAATACCTCAGCGTCT---T-G
* *
67761712 AGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTGAAGAACAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAAACAAAAA
* *
67761777 TGGAAAACACCTCAGCGTCTTG
65 TTGAAAATACCTCAGCGTCTTG
* *
67761799 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAA
67761857 TACCTCAACA
Statistics
Matches: 358, Mismatches: 41, Indels: 50
0.80 0.09 0.11
Matches are distributed among these distances:
87 88 0.25
88 3 0.01
89 7 0.02
90 25 0.07
91 44 0.12
92 41 0.11
93 43 0.12
94 55 0.15
95 24 0.07
96 17 0.05
97 11 0.03
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (86 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAACAAAAAT
TGAAAATACCTCAGCGTCTTG
Found at i:67762218 original size:147 final size:146
Alignment explanation
Indices: 67761769--67762203 Score: 744
Period size: 147 Copynumber: 3.0 Consensus size: 146
67761759 GAAATTGAAG
* **
67761769 AACAAAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
* *
67761834 TTTTGAAAGACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACGTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
67761899 GAGTTGATTTTTGACA
131 GAGTTGATTTTTGACA
*
67761915 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
* * *
67761980 CTTTTTAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATA
66 -TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
67762045 TGAGTTGATTTTTGACA
130 TGAGTTGATTTTTGACA
*
67762062 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAACTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
* * *
67762127 TTTTGGAAGACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTGAACTCACCTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
67762192 GAGTTGATTTTT
131 GAGTTGATTTTT
67762204 TTTGAAACAT
Statistics
Matches: 271, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
146 132 0.49
147 139 0.51
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (146 bp):
AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTGACA
Found at i:67762439 original size:13 final size:13
Alignment explanation
Indices: 67762393--67762437 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
67762383 TTGATTTTTG
67762393 AAAAACAGAAATT
1 AAAAACAGAAATT
*
67762406 AAAAGCAGAAATT
1 AAAAACAGAAATT
*
67762419 GAAAAATAGAAATT
1 -AAAAACAGAAATT
67762433 AAAAA
1 AAAAA
67762438 TACCTCGGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 17 0.61
14 11 0.39
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:67762467 original size:100 final size:101
Alignment explanation
Indices: 67762221--67762509 Score: 399
Period size: 100 Copynumber: 2.9 Consensus size: 101
67762211 CATAAATTAA
*
67762221 AAAAAT-GAAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAATAG-AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
67762285 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* * *
67762320 AAAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAATAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
67762385 GATTTTTGAAAAACAGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* * * *
67762420 AAAAATAGAAATTAAAAATACCTCGGCATGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAATAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
67762485 GATTTTT-AAAAAGCATAAATTGAAA
66 GATTTTTGAAAAA-CAGAAATTGAAA
67762510 TTACCTCAGC
Statistics
Matches: 168, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
99 66 0.39
100 84 0.50
101 18 0.11
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (101 bp):
AAAAATAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
Found at i:67762695 original size:177 final size:174
Alignment explanation
Indices: 67762320--67762776 Score: 636
Period size: 177 Copynumber: 2.6 Consensus size: 174
67762310 GCAAAAATTG
*
67762320 AAAAACAGAAATTGAAAATACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
67762384 T-GATTTTTGAAAAACAGAAATT-AAAAGCAGAAATTGAAAAATAGAAATTAAAAATACCTCGGC
65 TGGTTTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTGAAAAATAGAAATTAAAAAGACCTCGGC
* * * *
67762447 ATGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGATTTTT
130 ATGCCCCGAGACTCAACTCACCTCTCACAATACGAGTTGATTTTT
*
67762492 AAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
67762557 TGGTTTTTTGAAAAGCATAAATTGAAAAAACAGAAATTGAAAACA-A-AATTTGAAAAGACCTCG
65 TGGTTTTTTGAAAAGCAGAAATTG-AAAAGCAGAAATTGAAAA-ATAGAAATTAAAAAGACCTCG
* *
67762620 GCGTATGGCTCGAGACTCAACTCACCTCTCACAATACGAGTTGATTTTTT
128 GC--ATGCCCCGAGACTCAACTCACCTCTCACAATACGAGTTGA-TTTTT
* *
67762670 GACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
67762735 GATTCTTTTGAAAAGTAGAAATTGAAAAGCAGAAATTGAAAA
66 GGTT-TTTTGAAAAGCAGAAATTGAAAAGCAGAAATTGAAAA
67762777 TACCTCAGCA
Statistics
Matches: 253, Mismatches: 22, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
172 5 0.02
173 55 0.22
174 20 0.08
175 16 0.06
176 18 0.07
177 114 0.45
178 25 0.10
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.26
Consensus pattern (174 bp):
AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GGTTTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTGAAAAATAGAAATTAAAAAGACCTCGGCA
TGCCCCGAGACTCAACTCACCTCTCACAATACGAGTTGATTTTT
Found at i:67762761 original size:14 final size:14
Alignment explanation
Indices: 67762742--67762776 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
67762732 GTTGATTCTT
*
67762742 TTGAAAAGTAGAAA
1 TTGAAAAGCAGAAA
67762756 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
67762770 TTGAAAA
1 TTGAAAA
67762777 TACCTCAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:67762906 original size:84 final size:82
Alignment explanation
Indices: 67762668--67763246 Score: 326
Period size: 75 Copynumber: 6.9 Consensus size: 82
67762658 AGTTGATTTT
67762668 TTGAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAA-TACCTCAGC--GT-CTGAGGCTCAACTCACCTCTCGCAATATGA
*
67762732 GTTGATTCTTTTGAAAAGTAGAAA
62 GTTGATT-TTTTGAAAA--ATAAA
** *
67762756 TTGA-AAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTTACCTCTCGCAATA
1 TTGACAAA-CAGAAATTG-AAATACCTCAG--CGT---CTGAGGCTCAACTCACCTCTCGCAATA
67762820 TGAGTTGGA-TTTTTGAAAAATAAA
59 TGAGTT-GATTTTTTGAAAAATAAA
*
67762844 TTGACAAACGGAAATTGACAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGACAAACAGAAATTGA-AATACCTCAGCGTC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
67762909 TGATTTTTTTGAAAAAT--A
64 TGA-TTTTTTGAAAAATAAA
**
67762927 --GA-AATTA-AAA-T----TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGACAAACAGAAATTGAAATACCTCAGC--GT-CTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
67762983 TTGATTCTTTAAAAACATACA
63 TTGATTTTTTGAAAA-ATAAA
* * ** * * *
67763004 TT-A-AAATAGAAATTGAACATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTTGTAATAT
1 TTGACAAACAGAAATTGAA-ATACCTCAG--CGT---CTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
67763067 GAATTGATTTTTT-TAAAAGACA
60 GAGTTGATTTTTTGAAAAATAAA
** * ** ** *
67763089 --G--AAATTGAAAAT-ACCT-CAAC-GTGTCTTGAGGCTCAACTCACCTCCTCGCAATATGAGT
1 TTGACAAACAGAAATTGAAATACCTCAGCGTC-TGAGGCTCAACTCACCT-CTCGCAATATGAGT
* **
67763147 TGA-TTTTTGAAAACAGATT
64 TGATTTTTTGAAAA-ATAAA
* ** **
67763166 TTGAAAAACAGATTTTGAAAATACCTCAGCGTGCCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGACAAACAGAAATTG-AAATACCTCAGCGT--CTGAGGCTCAACTCACCTCTCGCAATATGAG
*
67763231 TAGATTTTTTTGAAAA
63 TTGA-TTTTTTGAAAA
67763247 CAGAAATAAA
Statistics
Matches: 386, Mismatches: 56, Indels: 99
0.71 0.10 0.18
Matches are distributed among these distances:
73 9 0.02
74 10 0.03
75 57 0.15
76 18 0.05
77 6 0.02
78 6 0.02
79 8 0.02
80 4 0.01
81 9 0.02
82 1 0.00
83 15 0.04
84 31 0.08
85 44 0.11
86 21 0.05
87 47 0.12
88 32 0.08
89 22 0.06
90 12 0.03
91 32 0.08
92 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.29
Consensus pattern (82 bp):
TTGACAAACAGAAATTGAAATACCTCAGCGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTGAAAAATAAA
Found at i:67762932 original size:250 final size:239
Alignment explanation
Indices: 67762635--67763260 Score: 710
Period size: 248 Copynumber: 2.5 Consensus size: 239
67762625 TGGCTCGAGA
* * *
67762635 CTCAACTCACCTCTCACAATACGAGTTGA-TTTTTTG-ACAACAGAAATTGAAATTACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAATTACCTCAGCG
**
67762698 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATTGAAAA
66 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAACAGAAATT-AAAA
* *
67762763 GCAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTTACCTCTCGCAATATGAGTTGG
130 -CAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAATT-G
* *
67762828 ATTTTTGAAAAATAAATTGACAAACGGAAATTGACAATACCTC-A-GCGTCTTGAGG
193 ATTTTT-----ATAAA-AGAC--A--GAAATTGAAAATACCTCAACGCGTCTTGAGG
* *
67762883 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTAAAATTACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAATTACCTCAGCG
* * *
67762948 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTC-TTT-AAAAACATACATTAAAAT
66 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAACAGAAATTAAAAC
* * * * *
67763011 AGAAATTGAACATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTTGTAATATGAATTGATT
131 AGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAATTGATT
* *
67763076 TTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGG
196 TTTATAAAAGACAGAAATTGAAAATACCTCAACGCGTCTTGAGG
**
67763120 CTCAACTCACCTCCTCGCAATATGAGTTGATTTTTGAAAACAGATTTTGAAAAACAGATTTTGAA
1 CTCAACTCACCT-CTCGCAATATGAGTTGA--TTT---------TTTTGAAAAACAGAAATTGAA
* ** * *
67763185 AATACCTCAGCGTG-CCCAAGGCTCAACTCACCTCTCGCAATATGAGTAGATTTTTTTG-AAAAC
54 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAAC
*
67763248 AGAAATAAAAACA
119 AGAAATTAAAACA
67763261 TCAAAATACC
Statistics
Matches: 326, Mismatches: 34, Indels: 35
0.83 0.09 0.09
Matches are distributed among these distances:
235 16 0.05
236 1 0.00
237 23 0.07
238 17 0.05
239 3 0.01
240 7 0.02
245 7 0.02
246 54 0.17
247 4 0.01
248 71 0.22
249 57 0.17
250 66 0.20
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (239 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAATTACCTCAGCG
TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAACAGAAATTAAAAC
AGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAATTGATT
TTTATAAAAGACAGAAATTGAAAATACCTCAACGCGTCTTGAGG
Found at i:67762944 original size:161 final size:157
Alignment explanation
Indices: 67762756--67763253 Score: 553
Period size: 162 Copynumber: 3.1 Consensus size: 157
67762746 AAAGTAGAAA
* * * *
67762756 TTGAAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTTACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAG-ACGTG-TCCGAGGCTCAACTCACCTCTCGCAATAT
* **
67762821 GAGTTGGATTTTTGAAAA-ATAAATTGACAAACGGAAATTGACAATACCTCAGCGT-CTTGAGGC
64 GAGTT-GATTTTTGAAAACATAAATTGA-AAACAGAAATTGA-AATACCTCAGCGTGC-CAAGGC
67762884 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
125 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
67762917 TTGAAAAATAGAAATT-AAAATTACCTCAG-CGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAA-TACCTCAGACGTGTCC-GAGGCTCAACTCACCTCTCGCAATAT
* * * *
67762980 GAGTTGATTCTTTAAAAACATACATT-AAAATAGAAATTGAACATAGCTCAGCACGTGAGCCAAG
64 GAGTTGATT-TTTGAAAACATAAATTGAAAACAGAAATTGAA-ATACCTCAG--CGT--GCCAAG
* * * *
67763044 GCTCAACTCACTTCTTGTAATATGAATTGATTTTT
123 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
67763079 TT-AAAAGACAGAAATTGAAAATACCTCA-ACGTGTCTTGAGGCTCAACTCACCTCCTCGCAATA
1 TTGAAAA-ACAGAAATTGAAAATACCTCAGACGTGTC-CGAGGCTCAACTCACCT-CTCGCAATA
* ** **
67763142 TGAGTTGATTTTTGAAAACAGATTTTGAAAAACAGATTTTGAAAATACCTCAGCGTGCCCAAGGC
63 TGAGTTGATTTTTGAAAACATAAATTG-AAAACAGAAATTG-AAATACCTCAGCGTG-CCAAGGC
*
67763207 TCAACTCACCTCTCGCAATATGAGTAGATTTTT
125 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
67763240 TTG-AAAACAGAAAT
1 TTGAAAAACAGAAAT
67763254 AAAAACATCA
Statistics
Matches: 286, Mismatches: 31, Indels: 41
0.80 0.09 0.11
Matches are distributed among these distances:
157 1 0.00
158 25 0.09
159 41 0.14
160 22 0.08
161 66 0.23
162 87 0.30
163 24 0.08
164 18 0.06
165 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (157 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGACGTGTCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAACATAAATTGAAAACAGAAATTGAAATACCTCAGCGTGCCAAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTT
Found at i:67763169 original size:13 final size:13
Alignment explanation
Indices: 67763151--67763186 Score: 63
Period size: 14 Copynumber: 2.7 Consensus size: 13
67763141 ATGAGTTGAT
67763151 TTTTGAAAACAGA
1 TTTTGAAAACAGA
67763164 TTTTGAAAAACAGA
1 TTTTG-AAAACAGA
67763178 TTTTGAAAA
1 TTTTGAAAA
67763187 TACCTCAGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (13 bp):
TTTTGAAAACAGA
Found at i:67770376 original size:23 final size:22
Alignment explanation
Indices: 67770339--67770399 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 22
67770329 TAAGCCCTCC
67770339 AAAAAAAAACCTAACCAAAAAA
1 AAAAAAAAACCTAACCAAAAAA
* *
67770361 AAAGAAAAAACATAACCTAAAAA
1 AAA-AAAAAACCTAACCAAAAAA
67770384 AAAAAAAAACCTAACC
1 AAAAAAAAACCTAACC
67770400 CCCCCAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
22 15 0.43
23 20 0.57
ACGTcount: A:0.74, C:0.18, G:0.02, T:0.07
Consensus pattern (22 bp):
AAAAAAAAACCTAACCAAAAAA
Found at i:67770377 original size:28 final size:26
Alignment explanation
Indices: 67770339--67770391 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 26
67770329 TAAGCCCTCC
**
67770339 AAAAAAAAACCTAACCAAAAAAAAAG
1 AAAAAAAAACCTAAAAAAAAAAAAAG
67770365 AAAAAACATAACCTAAAAAAAAAAAAA
1 AAAAAA-A-AACCTAAAAAAAAAAAAA
67770392 ACCTAACCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.26
27 1 0.04
28 16 0.70
ACGTcount: A:0.79, C:0.13, G:0.02, T:0.06
Consensus pattern (26 bp):
AAAAAAAAACCTAAAAAAAAAAAAAG
Found at i:67770382 original size:22 final size:23
Alignment explanation
Indices: 67770339--67770399 Score: 88
Period size: 22 Copynumber: 2.7 Consensus size: 23
67770329 TAAGCCCTCC
67770339 AAAAAAAAACCTAACCAAAAAAA
1 AAAAAAAAACCTAACCAAAAAAA
* * *
67770362 AAGAAAAAACATAACC-TAAAAA
1 AAAAAAAAACCTAACCAAAAAAA
67770384 AAAAAAAAACCTAACC
1 AAAAAAAAACCTAACC
67770400 CCCCCAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
22 19 0.58
23 14 0.42
ACGTcount: A:0.74, C:0.18, G:0.02, T:0.07
Consensus pattern (23 bp):
AAAAAAAAACCTAACCAAAAAAA
Found at i:67770387 original size:17 final size:17
Alignment explanation
Indices: 67770359--67770397 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 17
67770349 CTAACCAAAA
67770359 AAAAAGAAAAAACATAACCT
1 AAAAA-AAAAAA-A-AACCT
67770379 AAAAAAAAAAAAAACCT
1 AAAAAAAAAAAAAACCT
67770396 AA
1 AA
67770398 CCCCCCCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 6 0.32
20 5 0.26
ACGTcount: A:0.77, C:0.13, G:0.03, T:0.08
Consensus pattern (17 bp):
AAAAAAAAAAAAAACCT
Found at i:67772923 original size:12 final size:12
Alignment explanation
Indices: 67772906--67772941 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
67772896 ATTCATTTGA
67772906 CATTCATGCATT
1 CATTCATGCATT
*
67772918 CATTCATGCATC
1 CATTCATGCATT
*
67772930 CATTCATTCATT
1 CATTCATGCATT
67772942 GCATATCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:67772935 original size:16 final size:17
Alignment explanation
Indices: 67772914--67772945 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
67772904 GACATTCATG
67772914 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
67772930 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
67772946 ATCCCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Found at i:67780735 original size:41 final size:41
Alignment explanation
Indices: 67780685--67781024 Score: 518
Period size: 41 Copynumber: 8.3 Consensus size: 41
67780675 AATTCATCAT
* *
67780685 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
67780726 ATTCAGATCACCGGCGCTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
67780767 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
67780808 ATTCAGATCACCGGCGCTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
67780849 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
67780890 ATTCAGATCACCGGCGCTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
67780931 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* * *
67780972 ATTCAAATCACCGGCACTTAGCCTACTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
67781013 ATTCATATCACC
1 ATTCAGATCACC
67781025 AATTCCAAAC
Statistics
Matches: 270, Mismatches: 29, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 270 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:67780828 original size:82 final size:82
Alignment explanation
Indices: 67780691--67781024 Score: 641
Period size: 82 Copynumber: 4.1 Consensus size: 82
67780681 TCATATTCGG
67780691 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
67780756 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
67780773 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
67780838 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
67780855 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
67780920 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
* * *
67780937 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAAATCACCGGCACTTAGCCTACTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
67781002 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
67781019 ATCACC
1 ATCACC
67781025 AATTCCAAAC
Statistics
Matches: 249, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 249 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (82 bp):
ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
TTTATAACCTGATTCAT
Found at i:67781644 original size:86 final size:86
Alignment explanation
Indices: 67781499--67781672 Score: 348
Period size: 86 Copynumber: 2.0 Consensus size: 86
67781489 ACAGACTTAC
67781499 CTCGGACAGTGAAAAATTGAAATCGGATAATTAGCCGACGATTTTGGTTTTTCCCCGGTCTAGCT
1 CTCGGACAGTGAAAAATTGAAATCGGATAATTAGCCGACGATTTTGGTTTTTCCCCGGTCTAGCT
67781564 CCGATTTCTTTGGTTCTTGAT
66 CCGATTTCTTTGGTTCTTGAT
67781585 CTCGGACAGTGAAAAATTGAAATCGGATAATTAGCCGACGATTTTGGTTTTTCCCCGGTCTAGCT
1 CTCGGACAGTGAAAAATTGAAATCGGATAATTAGCCGACGATTTTGGTTTTTCCCCGGTCTAGCT
67781650 CCGATTTCTTTGGTTCTTGAT
66 CCGATTTCTTTGGTTCTTGAT
67781671 CT
1 CT
67781673 TAATCAACAT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (86 bp):
CTCGGACAGTGAAAAATTGAAATCGGATAATTAGCCGACGATTTTGGTTTTTCCCCGGTCTAGCT
CCGATTTCTTTGGTTCTTGAT
Found at i:67784159 original size:72 final size:73
Alignment explanation
Indices: 67784058--67784232 Score: 221
Period size: 72 Copynumber: 2.4 Consensus size: 73
67784048 TATTTTTCAA
* * * * *
67784058 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGATGACGT-ATTTTCAATTTTTG
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGACGTAATCTT-AATTTCTG
67784122 TGTT-TTAA-
65 T-TTGTTAAG
** * *
67784130 TTTCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATCTTAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGACGTAATCTTAATTTCTGT
67784195 TTGTTAAG
66 TTGTTAAG
*
67784203 AATCAACTCATATTGCGAGAGGTGGGTTGA
1 AATCAACTCATATTGCGAGAGGTGAGTTGA
67784233 ACCTTTTAAT
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
71 2 0.02
72 55 0.63
73 30 0.34
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.34
Consensus pattern (73 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGACGTAATCTTAATTTCTGT
TTGTTAAG
Found at i:67784406 original size:88 final size:88
Alignment explanation
Indices: 67784257--67784589 Score: 472
Period size: 88 Copynumber: 3.8 Consensus size: 88
67784247 ACTTTTTCAA
*
67784257 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
*
67784322 CTTCATTATTATGTTTTTGAAAG
66 TTTCATTATTATGTTTTTGAAAG
**
67784345 AATCAGGTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
67784410 TTTCATTATTATGTTTTTGAAAG
66 TTTCATTATTATGTTTTTGAAAG
* *
67784433 AATCAACT-AGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTC
1 AATCAACTCA-TATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCCGAGGTATTTTCAATTTC
* * * ** *
67784497 CGTTTTTCAAT-TTCTGTCTTTCAAAAA
63 TG-TTTTCATTATTATGT-TTTTGAAAG
* * *
67784524 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
67784589 T
66 T
67784590 GTCAAAAAAA
Statistics
Matches: 221, Mismatches: 18, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
87 1 0.00
88 121 0.55
89 22 0.10
90 29 0.13
91 47 0.21
92 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (88 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
TTTCATTATTATGTTTTTGAAAG
Done.