Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 220 of 250
Found at i:67784505 original size:14 final size:14
Alignment explanation
Indices: 67784486--67784520 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
67784476 CGCCGAGGTA
67784486 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
67784500 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
67784514 CTTTCAA
1 TTTTCAA
67784521 AAAAATCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:67784625 original size:74 final size:76
Alignment explanation
Indices: 67784501--67784660 Score: 225
Period size: 74 Copynumber: 2.1 Consensus size: 76
67784491 AATTTCCGTT
* *
67784501 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA
1 TTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACA
*
67784565 CGCTGAGGTAA
66 CGCCGAGGTAA
* * * *
67784576 TTTCAATTTCTGT-TGTCAAAAAAATCAACTCGTTTTGCGAGTGGCGAGTTGAGCCTCAGGTCAT
1 TTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CAC
*
67784640 ACGCCGAGGTAT
65 ACGCCGAGGTAA
67784652 TTTCAATTT
1 TTTCAATTT
67784661 TCGTTTTTCA
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
74 42 0.56
75 13 0.17
76 20 0.27
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (76 bp):
TTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACA
CGCCGAGGTAA
Found at i:67784773 original size:167 final size:164
Alignment explanation
Indices: 67784424--67785628 Score: 1128
Period size: 167 Copynumber: 7.2 Consensus size: 164
67784414 ATTATTATGT
* * *
67784424 TTTTGAAAGAATCAACT-AGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
1 TTTTCAAAAAATCAACTCA-TATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
*
67784488 TTCAATTTCCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
65 TTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
67784553 AGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
130 AGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
* * * * *
67784588 TTGTCAAAAAAATCAACTCGTTTTGCGAGTGGCGAGTTGAGCCTCAGGTCATACGCCGAGGTATT
1 TTTTC-AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
*
67784653 TTCAATTTTCGTTTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
65 TTCAATTTCCGTTTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGT
67784718 TGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
128 TGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
* * * *
67784755 TTGTCAAAAAAGTCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACTCGCCGAGGTATT
1 TTTTCAAAAAA-TCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
* *
67784820 TTAAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGT
65 TTCAATTTCCGTTTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGT
* * * *
67784885 TGAGCCT-TGGCTCACGCGCTGAGCTATTTTCAATTTCTG
128 TGAGCCTCAGG---ACACGCTGAGGTAATTTCAATTTCTG
* * *
67784924 TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCACACGCCGAGGTAT
1 T-TTTC-AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTAT
*
67784989 TTTCAATTTCCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
64 TTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * * * * *
67785054 GAGCTTCAGATCACACACTGAGGTTTTTTTTTTTACTTCAATTTATAT
129 GAGCCTCAG--GACACGCTGAGG---------TAATTTCAATTTCT-G
* * * * * * *
67785102 TTTTC-AAAAATGAACTCATATTGCAAGAGGTGAGTTAAGCCCCAGATCACACGCCGAGTTATTT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
* * * **
67785166 TCAATTTCCATTTTTCAATTTCTG-TTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGA
66 TCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
67785228 GCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
131 GCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
* * * * * *
67785262 TTTTCCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGA-G----
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGGTATT
* * * *
67785321 --C----T---ATTTTCAATTTCTGTCTTTCAAATAAATCAACTCATATTGCGAGTGGTGAGTTG
65 TTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * * * *
67785377 AGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATAT
130 AGCCTCAG--GACACGCTGAGGTA--ATTTCAATTTCT-G
* *** * * *
67785417 TTTTCAAAAAAATCAACTCACATTGCGAGATTTGAGTTGAGCCTCGGGTCACATGTCGAGGTATT
1 TTTTC-AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
** ** * * *
67785482 TTCAAAATCTATTTTTCAAATTCTG-TTTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTG
65 TTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * *
67785544 AGCCT-TGGCTCACGTGCTGAGTTATTTTCAATTTCTG
130 AGCCTCAGG-ACAC--GCTGAGGTAATTTCAATTTCTG
* *
67785581 TTTTTTTTTCAAAAAAATTCAACTCATATTGCGAAAGGTGAGTTGAGC
1 -----TTTTC-AAAAAA-TCAACTCATATTGCGAGAGGCGAGTTGAGC
67785629 TTTTTAATTT
Statistics
Matches: 870, Mismatches: 113, Indels: 110
0.80 0.10 0.10
Matches are distributed among these distances:
147 13 0.01
148 4 0.00
150 34 0.04
152 11 0.01
154 12 0.01
155 5 0.01
156 40 0.05
157 3 0.00
160 6 0.01
161 51 0.06
163 1 0.00
164 3 0.00
165 96 0.11
166 9 0.01
167 234 0.27
168 45 0.05
169 41 0.05
170 126 0.14
171 6 0.01
172 35 0.04
174 4 0.00
175 76 0.09
177 14 0.02
178 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (164 bp):
TTTTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
TCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
Found at i:67784913 original size:93 final size:93
Alignment explanation
Indices: 67784760--67784931 Score: 220
Period size: 93 Copynumber: 1.8 Consensus size: 93
67784750 TTCTGTTGTC
* * * * *
67784760 AAAAAAGTCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACTCGCCGAGGTATTTTAAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACGCGCCGAGCTATTTTAAA
*
67784825 TTTCCGTTTTTCAATTTCTGCCTTTCAA
66 TTTCCGTCTTTCAATTTCTGCCTTTCAA
* * * * *
67784853 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACGCGCCGAGCTATTTTAA
*
67784917 ATTTCTGTCTTTCAA
65 ATTTCCGTCTTTCAA
67784932 AAAAATCAAC
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
92 2 0.03
93 64 0.97
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACGCGCCGAGCTATTTTAAA
TTTCCGTCTTTCAATTTCTGCCTTTCAA
Found at i:67784961 original size:77 final size:77
Alignment explanation
Indices: 67784832--67785008 Score: 255
Period size: 77 Copynumber: 2.3 Consensus size: 77
67784822 AAATTTCCGT
* * * *
67784832 TTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGAT
* *
67784897 CACGCGCTGAGCTA
64 CACACGCCGAGCTA
67784911 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCA
*
67784976 CACGCCGAGGTA
66 CACGCCGAGCTA
* *
67784988 TTTTCAATTTCCGTTTTTCAA
1 TTTTCAATTTCTGTCTTTCAA
67785009 TTTCTGTCTT
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
77 71 0.80
79 18 0.20
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCA
CACGCCGAGCTA
Found at i:67785007 original size:14 final size:14
Alignment explanation
Indices: 67784988--67785022 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
67784978 CGCCGAGGTA
67784988 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
67785002 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
67785016 CTTTCAA
1 TTTTCAA
67785023 AAAAATCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:67785066 original size:91 final size:89
Alignment explanation
Indices: 67784911--67785265 Score: 406
Period size: 91 Copynumber: 4.0 Consensus size: 89
67784901 CGCTGAGCTA
*
67784911 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCA
1 TTTTCAATTTCTGTCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
67784976 CACGCCGAGGTATTTTCAATTTCCGT
64 CACGCCGAGGTATTTTCAATTTCCGT
*
67785002 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGTCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
* *
67785067 CACACTGAGGT-TTTT---TTT---T
64 CACGCCGAGGTATTTTCAATTTCCGT
* * * * * * *
67785086 TTACTTCAATTTATATTTTTCAAAAATGAACTCATATTGCAAGAGGTGAGTTAAGCCCCAGATCA
1 TT--TTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
* *
67785151 CACGCCGAGTTATTTTCAATTTCCAT
64 CACGCCGAGGTATTTTCAATTTCCGT
* ** *
67785177 TTTTCAATTTCTGT-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACA
1 TTTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
** *
67785239 CGTTGAGGTATTTTCAATTTCTGT
66 CGCCGAGGTATTTTCAATTTCCGT
67785263 TTT
1 TTT
67785266 CCAAAAATCA
Statistics
Matches: 225, Mismatches: 30, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
84 50 0.22
85 4 0.02
86 39 0.17
87 4 0.02
88 39 0.17
89 10 0.04
90 4 0.02
91 75 0.33
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (89 bp):
TTTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
CGCCGAGGTATTTTCAATTTCCGT
Found at i:67785297 original size:73 final size:73
Alignment explanation
Indices: 67785177--67785830 Score: 312
Period size: 80 Copynumber: 8.2 Consensus size: 73
67785167 CAATTTCCAT
* ** *
67785177 TTTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACACG
*
67785241 TTGAGGTA
66 CTGAGGTA
* * *
67785249 TTTTCAATTTCTGTTTTCCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCAC
1 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAACAC
* *
67785313 GCGCTGAGCTA
63 ACGCTGAGGTA
* *
67785324 TTTTCAATTTCTGTCTTTCAAATAAATCAACTCATATTGCGAGTGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGT-TTTCAAA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-A-CA
*
67785389 CACACTGAGGTA
62 CACGCTGAGGTA
* * * ** **
67785401 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATTTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCT-GTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--AA
*
67785466 CACATG-TCGAGGTA
60 CACACGCT-GAGGTA
* ** *
67785480 TTTTCAAAATCTATTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTC---A---A--TTTC----TGT-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*** * *
67785545 GCCTTGGCTCACGTGCTGAGTTA
53 GCCTCAACACAC--GCTGAGGTA
* *
67785568 TTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAAAGGTGAGTTGAGCTTTT
1 TTTTCAATTTCTG-----TTTTC-AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CT
* * * * *
67785633 TAATTTCTGCGAGAGTTGAGTTGA
57 CAA---C-AC-A-CGCTGAGGT-A
* * *
67785657 GTCTTTTAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAGTC
1 -T-TTTCAATTTCTG-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CA-AC
**
67785721 ACA-TATCGAGGTA
61 ACACGCT-GAGGTA
**
67785734 TTTTCAAAATCTGCATAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
1 TTTTCAATTTCTG--T---TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--C
* * *
67785799 -TCACGCGCTGAGCTA
58 AACACACGCTGAGGTA
67785814 TTTTCAATTTCTGTTTT
1 TTTTCAATTTCTGTTTT
67785831 TAATGTCTGT
Statistics
Matches: 448, Mismatches: 73, Indels: 119
0.70 0.11 0.19
Matches are distributed among these distances:
72 18 0.04
73 32 0.07
74 2 0.00
75 36 0.08
76 11 0.02
77 49 0.11
78 6 0.01
79 61 0.14
80 68 0.15
81 9 0.02
82 31 0.07
83 2 0.00
84 30 0.07
85 9 0.02
86 4 0.01
87 7 0.02
88 54 0.12
89 7 0.02
90 1 0.00
91 11 0.02
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACACG
CTGAGGTA
Found at i:67785469 original size:79 final size:76
Alignment explanation
Indices: 67785177--67785831 Score: 332
Period size: 79 Copynumber: 8.2 Consensus size: 76
67785167 CAATTTCCAT
* * ** *
67785177 TTTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--AC
1 TTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCAGGTCAC
*
67785238 ACGTTGAGGTA
66 ACGCTGAGGTA
* * * * *
67785249 TTTTCAATTTCTGTTTTC-CAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCA
1 TTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCAGG-TCA
* *
67785312 CGCGCTGAGCTA
65 CACGCTGAGGTA
* * * *
67785324 TTTTCAATTTCTGTCTTTCAAATAAATCAACTCATATTGCGAG-TGGTGAGTTGAGCTTCAGATC
1 TTTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGCGAGAT-GTGAGTTGAGCCTCAGGTC
*
67785388 ACACACTGAGGTA
64 ACACGCTGAGGTA
* * * *
67785401 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATTTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCAGGT
*
67785466 CACATG-TCGAGGTA
63 CACACGCT-GAGGTA
** *
67785480 TTTTCAAAATCTATTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCT-TTTTTC-AA----------AAAAATCAACTCATATTGCGAGATGTGAGTTGA
* ** *
67785545 GCCT-TGGCTCACGTGCTGAGTTA
54 GCCTCAGG-TCACACGCTGAGGTA
* * *
67785568 TTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAAAGGTGAGTTGAGCTTTT
1 TTTTCAATTTC-----TTTTTTCAAAAAAA-TCAACTCATATTGCGAGATGTGAGTTGAGC---C
* ** * * * *
67785633 TAATTTCTGCGAGAGTTGAGTTGA
57 TCAGGTC-AC-A-CGCTGAGGT-A
* * *
67785657 GTCTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCA-G
1 -T-TTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT-CAGG
**
67785719 TCACA-TATCGAGGTA
62 TCACACGCT-GAGGTA
* ** * *
67785734 TTTTCAAAATCTGCATAAGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TG
1 TTTTC--AAT-TTC-T-TTTTTCAAAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCAG
* *
67785797 GCTCACGCGCTGAGCTA
61 G-TCACACGCTGAGGTA
67785814 TTTTCAATTTCTGTTTTT
1 TTTTCAATTTCT-TTTTT
67785832 AATGTCTGTT
Statistics
Matches: 453, Mismatches: 78, Indels: 100
0.72 0.12 0.16
Matches are distributed among these distances:
72 19 0.04
73 33 0.07
75 25 0.06
76 9 0.02
77 67 0.15
78 13 0.03
79 69 0.15
80 52 0.11
81 9 0.02
82 29 0.06
84 28 0.06
85 8 0.02
86 2 0.00
87 8 0.02
88 61 0.13
89 2 0.00
90 1 0.00
91 11 0.02
92 6 0.01
93 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (76 bp):
TTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCAGGTCAC
ACGCTGAGGTA
Found at i:67785482 original size:156 final size:147
Alignment explanation
Indices: 67785177--67785830 Score: 380
Period size: 166 Copynumber: 4.1 Consensus size: 147
67785167 CAATTTCCAT
* * **
67785177 TTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
1 TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACAC
* * * * *
67785242 TGAGGTATTTTCAATTTCTGTTTTCCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTG
66 TGAGGTATTTTCAATTTATGTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCG
*
67785307 GCTCACGCGCTGAGCTA
131 GCTCACACGCTGAGCTA
*** *
67785324 TTTTCAATTTCTGTCTTTCAAATAAATCAACTCATATTGCGAGTGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGT-TTTC-AA-AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-CA
* **
67785389 CACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATTTGAGT
61 CACACTGAGGTA--TTTTCAATTTAT-GTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGAGT
* *
67785454 TGAGCCTCGGGTCACATG-TCGAGGTATTTTCAAAATCTA
122 TGAGCCTCGGCTCACACGCT-GA-G------------CTA
* * *** *
67785493 TTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACG
1 -TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACAC-
* * * * *
67785558 TGCTGAGTTATTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAAAGGTGAG
64 -ACTGAGGTATTTTCAATTTATG-----TTTTC-AAAAAA-TCAACTCACATTGCGAGAGGTGAG
* *** * * *
67785623 TTGAGCTTTTTAATTTCTGCGAGA-GTTGAGTTGA
121 TTGAGC---CT--CGGCT-C-ACACGCTGAGCT-A
* ** * *
67785657 GTCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAGTCA
1 -T-TTTCAATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT-CA-ACA
* * *
67785722 CATA-TCGAGGTATTTTCAAAATCTGCATAAG-TTTCAAAAAATCAACTCATATTGCGAGAGGTG
61 CACACT-GAGGTATTTTC--AAT-T---TATGTTTTCAAAAAATCAACTCACATTGCGAGAGGTG
* *
67785785 AGTTGAGCCTTGGCTCACGCGCTGAGCTA
119 AGTTGAGCCTCGGCTCACACGCTGAGCTA
67785814 TTTTCAATTTCTGTTTT
1 TTTTCAATTTCTGTTTT
67785831 TAATGTCTGT
Statistics
Matches: 389, Mismatches: 65, Indels: 99
0.70 0.12 0.18
Matches are distributed among these distances:
147 14 0.04
148 4 0.01
149 2 0.01
150 32 0.08
151 1 0.00
152 11 0.03
154 15 0.04
155 17 0.04
156 43 0.11
157 3 0.01
158 7 0.02
159 3 0.01
161 1 0.00
163 1 0.00
164 31 0.08
165 32 0.08
166 54 0.14
167 39 0.10
168 8 0.02
169 20 0.05
170 39 0.10
172 2 0.01
173 1 0.00
175 2 0.01
176 4 0.01
177 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (147 bp):
TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACAC
TGAGGTATTTTCAATTTATGTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCG
GCTCACACGCTGAGCTA
Found at i:67785547 original size:244 final size:245
Alignment explanation
Indices: 67785249--67785827 Score: 684
Period size: 246 Copynumber: 2.4 Consensus size: 245
67785239 CGTTGAGGTA
* *
67785249 TTTTCAATTTCTGTTTTCCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
1 TTTTCAAATTCTGTTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
* **
67785314 CGCTGAGCTATTTTCAATTTCTGTCTTTCAAATAAA-TCAACTCATATTGCGAGTGGTGAGTTGA
65 CGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATTCAACTCATATTGCGAAAGGTGAGTTGA
*
67785378 GC-TTCAGA-TC-AC-ACA-CTGAGGT-A-TTTTTTCAATTTATATTTTTCAAAAAAATCAACTC
130 GCTTTCA-ATTCTACGACAGCTGAGGTGAGTCTTTT-AATTTATATTTTTC--AAAAATCAACTC
** * ** *
67785436 ACATTGCGAGATTTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATC
191 ACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATC
*
67785491 TATTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCA
1 ---TTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
* * *
67785556 CGTGCTGAGTTATTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAAAGGTG
63 CGCGCTGAGCTATTTTCAATTTCTG----TCTTTCAAAAAAATTCAACTCATATTGCGAAAGGTG
* * * * * * *
67785621 AGTTGAGCTTTTTAATTTCTGCGAGAGTTGAGTTGAGTCTTTTAATTTCTGTTTTTCAAAAATCA
124 AGTTGAGC-TTTCAA-TTCTACGACAGCTGAGGTGAGTCTTTTAATTTATATTTTTCAAAAATCA
*
67785686 ACTCATATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATC
187 ACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATC
*
67785745 --TGCATAA----G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
1 TTTTCA-AATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
67785803 GCGCTGAGCTATTTTCAATTTCTGT
64 GCGCTGAGCTATTTTCAATTTCTGT
67785828 TTTTAATGTC
Statistics
Matches: 290, Mismatches: 28, Indels: 35
0.82 0.08 0.10
Matches are distributed among these distances:
242 1 0.00
244 66 0.23
245 20 0.07
246 67 0.23
248 11 0.04
249 31 0.11
250 3 0.01
251 3 0.01
252 2 0.01
253 1 0.00
254 62 0.21
255 5 0.02
256 13 0.04
257 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (245 bp):
TTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
GCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATTCAACTCATATTGCGAAAGGTGAGTTGAG
CTTTCAATTCTACGACAGCTGAGGTGAGTCTTTTAATTTATATTTTTCAAAAATCAACTCACATT
GCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATC
Found at i:67785653 original size:30 final size:30
Alignment explanation
Indices: 67785610--67785671 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
67785600 CAACTCATAT
67785610 TGCGAAAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAAAGGTGAGTTGAGTC-TTTTAATTTC
* *
67785640 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAAAGGTGAGTTGAGTCTTTTAATTTC
67785670 TG
1 TG
67785672 TTTTTCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.21, C:0.10, G:0.27, T:0.42
Consensus pattern (30 bp):
TGCGAAAGGTGAGTTGAGTCTTTTAATTTC
Found at i:67786509 original size:18 final size:18
Alignment explanation
Indices: 67786486--67786528 Score: 79
Period size: 17 Copynumber: 2.4 Consensus size: 18
67786476 TAAGCCCTCC
67786486 AAAAAAAACCTAA-CCCA
1 AAAAAAAACCTAACCCCA
67786503 AAAAAAAACCTAACCCCA
1 AAAAAAAACCTAACCCCA
67786521 AAAAAAAA
1 AAAAAAAA
67786529 TCAAGAAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.70, C:0.26, G:0.00, T:0.05
Consensus pattern (18 bp):
AAAAAAAACCTAACCCCA
Found at i:67796637 original size:72 final size:71
Alignment explanation
Indices: 67796514--67796700 Score: 243
Period size: 72 Copynumber: 2.6 Consensus size: 71
67796504 GAGTTAAGCC
* * *
67796514 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGCTGAGCCTCAGGGCACGCT
1 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGAT
67796579 GAGGTA
66 GAGGTA
** *
67796585 TTTTCAATTTTTGTGTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTT-AATTTTTGT-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
67796649 ATGAGGTA
64 ATGAGGTA
** * *
67796657 -ACTAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTG
1 TTTTAATTTTTGTTTTTCAA-AATCAACTCATATTGCGAGAGGTG
67796701 GGTTGAACCT
Statistics
Matches: 100, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
69 3 0.03
70 10 0.10
71 27 0.27
72 56 0.56
73 4 0.04
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (71 bp):
TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGAT
GAGGTA
Found at i:67796880 original size:88 final size:87
Alignment explanation
Indices: 67796731--67797063 Score: 434
Period size: 88 Copynumber: 3.8 Consensus size: 87
67796721 ACTTTTTCAA
* *
67796731 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATGCCGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
*
67796796 CTTCATTATTATGTTTCTAAAAG
66 TTTCATTATTATGTTT-TAAAAG
* *
67796819 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCAAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
*
67796884 TTTCATTATTATGTTTTTGAAAG
66 TTTCATTATTATG-TTTTAAAAG
* * * *
67796907 AATCAAATCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCCGAGGTATTTTCAATTTCT
* * *
67796972 GTTTTTCAAT-TTATCTCTTTCAAAAA
64 G-TTTTCATTATTATGT-TTT-AAAAG
* ** * *
67796998 AAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
67797063 T
66 T
67797064 GTCAAAAAAA
Statistics
Matches: 216, Mismatches: 23, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
88 117 0.54
89 26 0.12
90 30 0.14
91 43 0.20
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34
Consensus pattern (87 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
TTTCATTATTATGTTTTAAAAG
Found at i:67797099 original size:74 final size:76
Alignment explanation
Indices: 67796991--67797135 Score: 213
Period size: 74 Copynumber: 1.9 Consensus size: 76
67796981 TTTATCTCTT
* *
67796991 TCAAAAAAAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G-AACACGCTGAGGTAATTTC
1 TCAAAAAAAGCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTAACACGCCGAGGTAATTTC
67797054 AATTTCTGTTG
66 AATTTCTGTTG
* * * * *
67797065 TCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC
1 TCAAAAAAAGCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTAACACGCCGAGGTAATTTC
67797130 AATTTC
66 AATTTC
67797136 CATTTTTCAA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
74 39 0.63
75 1 0.02
76 22 0.35
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (76 bp):
TCAAAAAAAGCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTAACACGCCGAGGTAATTTC
AATTTCTGTTG
Found at i:67797135 original size:76 final size:73
Alignment explanation
Indices: 67796974--67797135 Score: 207
Period size: 74 Copynumber: 2.2 Consensus size: 73
67796964 CAATTTCCGT
*
67796974 TTTTCAATTTATCTCTTTCAAAAAAAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACA
1 TTTTCAA-TT-TCTCTTTCAAAAAAAGCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGAACA
*
67797039 CGCTGAGGTA
64 CGCCGAGGTA
* * * * * *
67797049 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCAC
1 TTTTCAATTTCTCTT-TCAAAAAAAGCAACTCATATTGCGAGAGGCGAGTTGAGCCTCA-G-AAC
67797114 ACGCCGAGGTA
63 ACGCCGAGGTA
67797125 TTTTCAATTTC
1 TTTTCAATTTC
67797136 CATTTTTCAA
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
73 5 0.07
74 41 0.55
75 7 0.09
76 22 0.29
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (73 bp):
TTTTCAATTTCTCTTTCAAAAAAAGCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGAACACG
CCGAGGTA
Found at i:67797202 original size:20 final size:20
Alignment explanation
Indices: 67797177--67797217 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
67797167 CAACTCATAT
67797177 TGCGAGAGGTGAGGTGAGCC
1 TGCGAGAGGTGAGGTGAGCC
67797197 TGCGAGAGGTGAGGTGAGCC
1 TGCGAGAGGTGAGGTGAGCC
67797217 T
1 T
67797218 CAGGACACGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.15, G:0.49, T:0.17
Consensus pattern (20 bp):
TGCGAGAGGTGAGGTGAGCC
Found at i:67797228 original size:186 final size:185
Alignment explanation
Indices: 67797011--67797382 Score: 613
Period size: 186 Copynumber: 2.0 Consensus size: 185
67797001 CAACTCATAT
*
67797011 TGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAA-T
1 TGCGAGAGGTGAGGTGAGCCTCAGAACACGCTGAGGTAATTTCAATTTCTGTTGT-AAAAAAAGT
* *
67797075 CAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCATT
65 CAACTCGTATTGCGAGCGACGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCATT
67797140 TTTCAATTTTCGCCTTT-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGGTGAGCC
130 TTTCAA-TTT-GCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGGTGAGCC
*
67797197 TGCGAGAGGTGAGGTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTAAAAAAAGTC
1 TGCGAGAGGTGAGGTGAGCCTCAGAACACGCTGAGGTAATTTCAATTTCTGTTGTAAAAAAAGTC
* **
67797262 AACTCGTATTGCGAGCGACGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCGATTTCTGTTT
66 AACTCGTATTGCGAGCGACGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCATTT
* * *
67797327 TTCAATTTGCCTTTCAAAAAAAAATCGATTCATATTGCGAGAGGTGAGTTGAGCC
131 TTCAATTTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGGTGAGCC
67797382 T
1 T
67797383 TGGCTCAGAA
Statistics
Matches: 174, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
184 6 0.03
185 48 0.28
186 120 0.69
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (185 bp):
TGCGAGAGGTGAGGTGAGCCTCAGAACACGCTGAGGTAATTTCAATTTCTGTTGTAAAAAAAGTC
AACTCGTATTGCGAGCGACGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCATTT
TTCAATTTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGGTGAGCC
Found at i:67798200 original size:10 final size:10
Alignment explanation
Indices: 67798185--67798209 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
67798175 ATGGCATCTT
67798185 AAAAAAAAGA
1 AAAAAAAAGA
67798195 AAAAAAAAGA
1 AAAAAAAAGA
67798205 AAAAA
1 AAAAA
67798210 GGGGATCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:67799352 original size:72 final size:71
Alignment explanation
Indices: 67799231--67799425 Score: 248
Period size: 72 Copynumber: 2.7 Consensus size: 71
67799221 GAGTTAAGCC
* * *
67799231 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGA
1 TTTTCAATTTTTGTTTTT-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGA
67799295 TGAGGTA
65 TGAGGTA
**
67799302 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGA
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGA
67799367 TGAGGTA
65 TGAGGTA
* * * * * *
67799374 ATCTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TTTTCAATTTTTGTTT-TTAA-AATCAACTCATATTGCAAGAGGTGAGTTGA
67799426 ACCTTTTAAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
71 6 0.06
72 71 0.66
73 30 0.28
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.36
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGAT
GAGGTA
Found at i:67799599 original size:88 final size:88
Alignment explanation
Indices: 67799450--67799781 Score: 434
Period size: 88 Copynumber: 3.8 Consensus size: 88
67799440 ACTTTTTCAA
*
67799450 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
* *
67799515 CTTCATTATTATGTTTTTGTAAG
66 TTTCATTATTATGTTTTTGAAAG
*
67799538 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
67799603 TTTCATTATTATGTTTTTGAAAG
66 TTTCATTATTATGTTTTTGAAAG
* * * * *
67799626 AATCAACTCGTATTGCGA-AAGCGATTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCCGAGGTATTTTCAATTTCT
* * * ** *
67799690 GTTTTTCAAT-TTCTGCCTTTCAAAAA
64 G-TTTTCATTATTATG-TTTTTGAAAG
* ** * *
67799716 AAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
67799781 T
66 T
67799782 GTCAAAAAAA
Statistics
Matches: 215, Mismatches: 24, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
87 17 0.08
88 104 0.48
89 50 0.23
90 29 0.13
91 15 0.07
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (88 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
TTTCATTATTATGTTTTTGAAAG
Found at i:67799817 original size:74 final size:76
Alignment explanation
Indices: 67799693--67799853 Score: 220
Period size: 74 Copynumber: 2.1 Consensus size: 76
67799683 AATTTCCGTT
*
67799693 TTTCAATTTCTGCCTTTCAAAAAAAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G-AAC
1 TTTCAATTTCTG-CTTTCAAAAAAAGCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGGTAAC
67799756 ACGCTGAGGTAA
65 ACGCTGAGGTAA
* * * *
67799768 TTTCAATTTCTG-TTGTCAAAAAAATCAACTCGTATTGCGAGTGGAGAGTTGAGCCTCAGGTCAC
1 TTTCAATTTCTGCTT-TCAAAAAAAGCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGGTAAC
* *
67799832 ACGCTGATGTAT
65 ACGCTGAGGTAA
67799844 TTTCAATTTC
1 TTTCAATTTC
67799854 CGTTTTTCAA
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
73 2 0.03
74 39 0.51
75 13 0.17
76 22 0.29
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31
Consensus pattern (76 bp):
TTTCAATTTCTGCTTTCAAAAAAAGCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGGTAACA
CGCTGAGGTAA
Found at i:67799948 original size:167 final size:165
Alignment explanation
Indices: 67799626--67800821 Score: 1188
Period size: 167 Copynumber: 7.2 Consensus size: 165
67799616 TTTTTGAAAG
* * * *
67799626 AATCAACTCGTATTGCGA-AAGCGATTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* *
67799690 GTTTTTCAATTTCTGCCTTTCAAAAAAAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAA
66 GTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
*
67799755 CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
131 CACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
* * * * *
67799790 AATCAACTCGTATTGCGAGTGGAGAGTTGAGCCTCAGGTCACACGCTGATGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
*
67799855 GTTTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAG
66 GTTTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
67799920 GACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
129 GACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
* * * * **
67799957 AGTCAACTCGTATTGCAAGCGACGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* * *
67800022 GTTTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGTGAGAGGTGAGTTGAGCCT-TG
66 GTTTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* * *
67800086 GCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAA
129 G---ACACGCTGAGGTAATTTCAATTTCTGT-TTTCAAAAA
*
67800127 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* *
67800192 GTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
66 GTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--
* * * * * *
67800257 CACACACTGAGGTTTTTTTTTTTTACTTCAATTTATATTTTTC--AAA
129 GACACGCTGAGG----------TAATTTCAATTTCT-GTTTTCAAAAA
* *
67800303 AATGAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* ** ** *
67800368 ATTTTTCAATTTCT-ATTTTC---AAAATGCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
66 GTTTTTCAATTTCTGCCTTTCAAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* *
67800429 ACACGTTGAGGTATTTTCAATTTCTGTTTTC-AAAA
130 ACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
* * * *
67800464 AATCAACTTATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGA-G------C----T-
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCGAGGTATTTTCAATTTC
* * **
67800516 --ATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTTTCAGA
65 CGTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-
* * * * *
67800579 TCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAA
129 -GACACGCTGAGGTA--ATTTCAATTTCT-GTTTTCAAAAA
* * * * * * ** *
67800620 AATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTTAAAATCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* * ** *
67800685 GTTTTTCAAATTCTG-TTTTC--AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT-TGGC
66 GTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
* * *
67800746 TCACGTGCTGAGCTATTTTCAATTTCTGTTTTTTTTTCAAAAA
130 ACAC--GCTGAGGTAATTTCAATTTCTG-----TTTTCAAAAA
67800789 AATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
67800822 TTTTTAATTT
Statistics
Matches: 869, Mismatches: 105, Indels: 110
0.80 0.10 0.10
Matches are distributed among these distances:
147 12 0.01
148 4 0.00
150 30 0.03
151 5 0.01
152 11 0.01
154 12 0.01
155 5 0.01
156 42 0.05
157 3 0.00
160 7 0.01
161 54 0.06
164 18 0.02
165 75 0.09
166 3 0.00
167 234 0.27
168 44 0.05
169 41 0.05
170 126 0.14
171 9 0.01
172 5 0.01
173 30 0.03
175 4 0.00
176 80 0.09
178 14 0.02
179 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (165 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
GTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
CACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
Found at i:67800153 original size:77 final size:77
Alignment explanation
Indices: 67800024--67800200 Score: 237
Period size: 77 Copynumber: 2.3 Consensus size: 77
67800014 CAATTTCCGT
* * * ** *
67800024 TTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAT
* *
67800089 CACGCGCTGAGCTA
64 CACACGCCGAGCTA
67800103 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
67800168 CACGCCGAGGTA
66 CACGCCGAGCTA
* *
67800180 TTTTCAATTTCCGTTTTTCAA
1 TTTTCAATTTCTGTCTTTCAA
67800201 TTTCTGTCTT
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
77 69 0.79
79 18 0.21
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
CACGCCGAGCTA
Found at i:67800199 original size:14 final size:14
Alignment explanation
Indices: 67800180--67800214 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
67800170 CGCCGAGGTA
67800180 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
67800194 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
67800208 CTTTCAA
1 TTTTCAA
67800215 AAAAATCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:67800258 original size:91 final size:89
Alignment explanation
Indices: 67800103--67800458 Score: 435
Period size: 91 Copynumber: 4.0 Consensus size: 89
67800093 CGCTGAGCTA
*
67800103 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTATCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
67800168 CACGCCGAGGTATTTTCAATTTCCGT
64 CACGCCGAGGTATTTTCAATTTCCGT
* *
67800194 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTATCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
* * *
67800259 CACACTGAGGT-TTTT---TTT--TT
64 CACGCCGAGGTATTTTCAATTTCCGT
* * *
67800279 TTACTTCAATTTATATTTTTCAAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TT--TTCAATTTCTATCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
67800344 CACGCCGAGGTATTTTCAATTTCCAT
64 CACGCCGAGGTATTTTCAATTTCCGT
** *
67800370 TTTTCAATTTCTAT-TTTC-AAAATGCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GAC
1 TTTTCAATTTCTATCTTTCAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
** *
67800431 ACGTTGAGGTATTTTCAATTTCTGT
65 ACGCCGAGGTATTTTCAATTTCCGT
67800456 TTT
1 TTT
67800459 CAAAAAATCA
Statistics
Matches: 235, Mismatches: 21, Indels: 23
0.84 0.08 0.08
Matches are distributed among these distances:
85 54 0.23
86 30 0.13
87 23 0.10
88 34 0.14
89 14 0.06
90 4 0.02
91 76 0.32
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (89 bp):
TTTTCAATTTCTATCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
CGCCGAGGTATTTTCAATTTCCGT
Found at i:67800269 original size:337 final size:332
Alignment explanation
Indices: 67799448--67800821 Score: 1301
Period size: 337 Copynumber: 4.1 Consensus size: 332
67799438 CTACTTTTTC
*
67799448 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
* * * * *** * *
67799511 CTG-TCTTCATTATTATGT-TTTTGTAAGAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 CCGTTTTTCAAT-TTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* * * * *
67799574 GGTCACGC-C-GAGGTATTTTCAATTTCT-GTTTTCATTATTATGTTTTTGAAAGAATCAACTCG
130 GATCACACACTGAGGTAATTTCAATTTATAGTTTTCA--A--A--------AAAG--TCAACTCA
*
67799636 TATTGCGAA-AGCGATTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAAT
181 TATTGC-AAGAGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAAT
* ** ** *
67799700 TTCTGCCTTTCAAAAAAAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--AACACGCTGA
245 TTCTGCCTTTC--AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGCTCACACGCTGA
* * *
67799763 GGTAATTTCAATTTCTGTTGTCAAA
308 GCTATTTTCAATTTCTGTTTTCAAA
* * * * *
67799788 AAAATCAACTCGTATTGCGAGTGGAGAGTTGAGCCTCAGGTCACACGCTGATGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
* *
67799853 CCGTTTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC
66 CCGTTTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * * * * *
67799918 AG--GACACGCTGAGGTAATTTCAATTTCT-GTTGTCAAAAAAGTCAACTCGTATTGCAAGCGAC
129 AGATCACACACTGAGGTAATTTCAATTTATAGTTTTCAAAAAAGTCAACTCATATTGCAAGAG-C
67799980 GAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAA
193 GAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC--
* * ** *
67800045 AAAAAAATCGACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
256 --AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAA
67800110 TTTCTGTCTTTCAAA
319 TTTCTGT-TTTCAAA
*
67800125 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
*
67800190 CCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
66 CCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* * * *
67800255 ATCACACACTGAGGTTTTTTTTTTTTACTTCAATTTATATTTTTC-AAAAA-TGAACTCATATTG
131 ATCACACACTGAGG----------TAATTTCAATTTATAGTTTTCAAAAAAGTCAACTCATATTG
* * * *
67800318 CGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCATTTTTCAATTTCT-
186 CAAGA-GCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTG
** ** * *
67800382 ATTTTC-AAAATGCAACTCATATTGCGAGAAATGAGTTGAGCC-T--CAAGACACGTTGAGGTAT
250 CCTTTCAAAAAT-CAACTCATATTGCGAGAAATGAGTTGAGCCTTGGC-TCACACGCTGAGCTAT
67800443 TTTCAATTTCTGTTTTC-AA
313 TTTCAATTTCTGTTTTCAAA
* * * *
67800462 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGA-G------C----
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCGAGGTATTTTCAATT
* **
67800515 T---ATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTTTCA
65 TCCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* * * * *
67800577 GATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATG
130 GATCACACACTGAGGTA--ATTTCAATTTATAGTTTTCAAAAAAGTCAACTCATATTGCAAGA-G
* * * * * ** * * *
67800642 TGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTTAAAATCTGTTTTTCAAATTCTG-TTTTCA
192 CGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCA
**
67800706 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTT
257 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAATTT
67800771 CTGTTTTTTTTTCAAA
322 CTG-----TTTTCAAA
67800787 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
67800822 TTTTTAATTT
Statistics
Matches: 889, Mismatches: 97, Indels: 110
0.81 0.09 0.10
Matches are distributed among these distances:
313 1 0.00
315 17 0.02
316 5 0.01
317 99 0.11
318 6 0.01
319 22 0.02
320 1 0.00
323 74 0.08
324 5 0.01
325 6 0.01
326 30 0.03
330 3 0.00
331 15 0.02
332 63 0.07
333 4 0.00
334 37 0.04
335 40 0.04
336 26 0.03
337 143 0.16
338 5 0.01
339 24 0.03
340 43 0.05
341 27 0.03
342 26 0.03
343 13 0.01
344 1 0.00
345 64 0.07
346 68 0.08
347 17 0.02
348 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34
Consensus pattern (332 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
CCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
ATCACACACTGAGGTAATTTCAATTTATAGTTTTCAAAAAAGTCAACTCATATTGCAAGAGCGAG
TTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAA
TCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAATTTCTGT
TTTCAAA
Found at i:67800386 original size:13 final size:13
Alignment explanation
Indices: 67800354--67800389 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
67800344 CACGCCGAGG
67800354 TATTTTCAATTTC
1 TATTTTCAATTTC
*
67800367 CATTTTTCAATTTC
1 TA-TTTTCAATTTC
67800381 TATTTTCAA
1 TATTTTCAA
67800390 AATGCAACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.25, C:0.17, G:0.00, T:0.58
Consensus pattern (13 bp):
TATTTTCAATTTC
Found at i:67800639 original size:79 final size:76
Alignment explanation
Indices: 67800370--67801024 Score: 348
Period size: 79 Copynumber: 8.2 Consensus size: 76
67800360 CAATTTCCAT
** * *
67800370 TTTTCAATTTCTA-TTTTC--AAAATGCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GA
1 TTTTCAATTTCTATTTTTCAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
*
67800430 CACGTTGAGGTA
65 CACGCTGAGGTA
* * * *
67800442 TTTTCAATTTCT-GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCA
1 TTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCA
* *
67800505 CGCGCTGAGCTA
65 CACGCTGAGGTA
* * *
67800517 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTTTCAGATCA
1 TTTTCAATTTCTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
*
67800582 CACACTGAGGTA
65 CACGCTGAGGTA
* * * * * *
67800594 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
*
67800659 CACATG-TCGAGGTA
63 CACACGCT-GAGGTA
* * ** **
67800673 TTTTTAAAATCTGTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGA
1 -TTTT-CAA------TTTC-TA-T-T-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * ** *
67800738 GCCTT-GGCTCACGTGCTGAGCTA
54 G-CTTCAGATCACACGCTGAGGTA
*
67800761 TTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTT
1 TTTTCAATTTC----TATTTTTC-AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TT
* * * * *
67800826 TA-ATTTCTGCGAGAGTTGAGTTGA
58 CAGA--TC-AC-A-CGCTGAGGT-A
* * * *
67800850 GTCTTTTAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-T
1 -T-TTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCTTCAGAT
**
67800913 CACA-TATCGAGGTA
63 CACACGCT-GAGGTA
* ** *
67800927 TTTTCAAAATCTGCATAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GG
1 TTTTC--AAT-TTC-TATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAG
* * *
67800991 CTCACGCGCTGAGCTA
61 ATCACACGCTGAGGTA
*
67801007 TTTTCAATTTCTGTTTTT
1 TTTTCAATTTCTATTTTT
67801025 AATGTCTGTT
Statistics
Matches: 449, Mismatches: 82, Indels: 100
0.71 0.13 0.16
Matches are distributed among these distances:
72 17 0.04
73 25 0.06
74 7 0.02
75 25 0.06
76 11 0.02
77 54 0.12
78 15 0.03
79 74 0.16
80 56 0.12
81 10 0.02
82 28 0.06
83 4 0.01
84 27 0.06
85 12 0.03
86 4 0.01
87 12 0.03
88 51 0.11
89 7 0.02
90 1 0.00
91 9 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (76 bp):
TTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCAC
ACGCTGAGGTA
Found at i:67800675 original size:156 final size:151
Alignment explanation
Indices: 67800388--67800694 Score: 348
Period size: 156 Copynumber: 2.0 Consensus size: 151
67800378 TTCTATTTTC
* ** *
67800388 AAAATGCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAATGCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACACTGAGGTATTTTCAATTTA
* * * *
67800453 TGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTAT
66 TGTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGCTGAGCTAT
**
67800518 TTTCAATTTCTGTCTTTCAAA
131 TTTCAAAATCTGTCTTTCAAA
** **
67800539 AAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGTTTCAGATCACACACTGAGGTATTTTTTCAA
1 AAAATGCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-CACACACTGAGGTA--TTTTCAA
* * * *
67800603 TTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TC
62 TTTAT-GTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGCT-
* * *
67800667 GAGGTATTTTTAAAATCTGTTTTTCAAA
124 GAGCTATTTTCAAAATCTGTCTTTCAAA
67800695 TTCTGTTTTC
Statistics
Matches: 128, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
150 29 0.23
151 6 0.05
152 11 0.09
154 11 0.09
155 6 0.05
156 65 0.51
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (151 bp):
AAAATGCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACACTGAGGTATTTTCAATTTA
TGTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGCTGAGCTAT
TTTCAAAATCTGTCTTTCAAA
Found at i:67800758 original size:244 final size:248
Alignment explanation
Indices: 67800442--67801020 Score: 735
Period size: 246 Copynumber: 2.4 Consensus size: 248
67800432 CGTTGAGGTA
* *
67800442 TTTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
1 TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
67800507 CGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGA
66 CGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGA
*
67800571 G-TTTCAGA-TC-AC-ACA-CTGAGGT-A-TTTTTTCAATTTATATTTTTCAAAAAAATCAACTC
131 GCTTTCA-ATTCTACGACAGCTGAGGTGAGTCTTTT-AATTTATATTTTTC--AAAAATCAACTC
* * ** * *
67800629 ACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTTAAAATCTG
192 ACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTG
**
67800686 TTTTTCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGCTCAC
1 -TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
* *
67800750 GTGCTGAGCTATTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGA
65 GCGCTGAGCTATTTTCAATTTCTG----TCTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGA
* * * * * * *
67800815 GTTGAGCTTTTTAATTTCTGCGAGAGTTGAGTTGAGTCTTTTAATTTCTGTTTTTCAAAAATCAA
126 GTTGAGC-TTTCAA-TTCTACGACAGCTGAGGTGAGTCTTTTAATTTATATTTTTCAAAAATCAA
*
67800880 CTCATATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTG
189 CTCACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTG
67800940 ----CATAA----G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
1 TTTTCA-AATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
67800996 GCGCTGAGCTATTTTCAATTTCTGT
65 GCGCTGAGCTATTTTCAATTTCTGT
67801021 TTTTAATGTC
Statistics
Matches: 294, Mismatches: 24, Indels: 35
0.83 0.07 0.10
Matches are distributed among these distances:
242 1 0.00
244 65 0.22
245 21 0.07
246 67 0.23
248 12 0.04
249 31 0.11
250 3 0.01
251 4 0.01
252 2 0.01
253 1 0.00
254 64 0.22
255 5 0.02
256 13 0.04
257 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (248 bp):
TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
CGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGA
GCTTTCAATTCTACGACAGCTGAGGTGAGTCTTTTAATTTATATTTTTCAAAAATCAACTCACAT
TGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTG
Found at i:67800774 original size:88 final size:88
Alignment explanation
Indices: 67800617--67800778 Score: 218
Period size: 88 Copynumber: 1.8 Consensus size: 88
67800607 TATTTTTCAA
** * * *
67800617 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTTAAAA
1 AAAAATCAACTCACATTGCGAGAAATGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
67800682 TCTGTTTTTCAAATTCTGTTTTC
66 TCTGTTTTTCAAATTCTGTTTTC
* * * *
67800705 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAAT
1 AAAAATCAACTCACATTGCGAGAAATGAGTTGAGCCTCGGCTCACATGTC-GAGCTATTTTCAAA
*
67800769 TTCTGTTTTT
65 ATCTGTTTTT
67800779 TTTTCAAAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 1 0.02
88 62 0.98
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCACATTGCGAGAAATGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
TCTGTTTTTCAAATTCTGTTTTC
Found at i:67800839 original size:30 final size:30
Alignment explanation
Indices: 67800803--67800864 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
67800793 CAACTCATAT
67800803 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
67800833 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
67800863 TG
1 TG
67800865 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:67801704 original size:21 final size:22
Alignment explanation
Indices: 67801680--67801727 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
67801670 AACCCTCCCA
67801680 AAAAAACCTAA-AAAAAAAAAG
1 AAAAAACCTAACAAAAAAAAAG
**
67801701 AAAAAACCTAACCCAAAAAAAG
1 AAAAAACCTAACAAAAAAAAAG
67801723 AAAAA
1 AAAAA
67801728 GAAAAACCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.77, C:0.15, G:0.04, T:0.04
Consensus pattern (22 bp):
AAAAAACCTAACAAAAAAAAAG
Found at i:67801704 original size:22 final size:23
Alignment explanation
Indices: 67801679--67801749 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 23
67801669 TAACCCTCCC
67801679 AAAAAAACCTAA-AAAAAAAAAG
1 AAAAAAACCTAACAAAAAAAAAG
*
67801701 -AAAAAACCTAACCCAAAAAAAGAAA
1 AAAAAAACCTAA--CAAAAAAA-AAG
67801726 AAGAAAAACCTAACCAAAAAAAAA
1 AA-AAAAACCTAA-CAAAAAAAAA
67801750 ACCAAGAAAC
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
21 11 0.26
24 7 0.17
25 4 0.10
26 10 0.24
27 10 0.24
ACGTcount: A:0.76, C:0.15, G:0.04, T:0.04
Consensus pattern (23 bp):
AAAAAAACCTAACAAAAAAAAAG
Found at i:67801720 original size:26 final size:26
Alignment explanation
Indices: 67801689--67801750 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 26
67801679 AAAAAAACCT
67801689 AAAAAAAAAAAGAAAAAACCTAACCCA
1 AAAAAAAAAAAG-AAAAACCTAACCCA
67801716 AAAAAAGAAAAAGAAAAACCTAA-CCA
1 AAAAAA-AAAAAGAAAAACCTAACCCA
67801742 AAAAAAAAA
1 AAAAAAAAA
67801751 CCAAGAAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
25 3 0.09
26 9 0.26
27 16 0.47
28 6 0.18
ACGTcount: A:0.77, C:0.15, G:0.05, T:0.03
Consensus pattern (26 bp):
AAAAAAAAAAAGAAAAACCTAACCCA
Found at i:67801732 original size:27 final size:27
Alignment explanation
Indices: 67801689--67801750 Score: 99
Period size: 26 Copynumber: 2.3 Consensus size: 27
67801679 AAAAAAACCT
67801689 AAAAAAAAAAAGAAAAAACCTAACCCAA
1 AAAAAAAAAAAGAAAAAACCTAA-CCAA
*
67801717 AAAAAGAAAAAG-AAAAACCTAACCAA
1 AAAAAAAAAAAGAAAAAACCTAACCAA
67801743 AAAAAAAA
1 AAAAAAAA
67801751 CCAAGAAACC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 11 0.34
27 10 0.31
28 11 0.34
ACGTcount: A:0.77, C:0.15, G:0.05, T:0.03
Consensus pattern (27 bp):
AAAAAAAAAAAGAAAAAACCTAACCAA
Found at i:67803413 original size:30 final size:30
Alignment explanation
Indices: 67803372--67803470 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
67803362 TAGGTACAAG
* *
67803372 TGGTGGTGGAGCAAGTGTGACTAGTAGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
67803402 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
67803432 TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
67803462 TGGTGGTGG
1 TGGTGGTGG
67803471 CAAAGGCTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.19, C:0.06, G:0.47, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:67803460 original size:18 final size:17
Alignment explanation
Indices: 67803405--67803460 Score: 50
Period size: 18 Copynumber: 3.5 Consensus size: 17
67803395 GTAGAGTAGG
67803405 TAGTGGAGCAAGTGTGGC
1 TAGTGGAGCAA-TGTGGC
67803423 TAGTGGAG---T-TGG-
1 TAGTGGAGCAATGTGGC
*
67803435 TGGTGGAGCAATTGTGGC
1 TAGTGGAGCAA-TGTGGC
67803453 TAGTGGAG
1 TAGTGGAG
67803461 TTGGTGGTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 7 0.23
13 3 0.10
14 1 0.03
16 1 0.03
17 3 0.10
18 15 0.50
ACGTcount: A:0.20, C:0.07, G:0.46, T:0.27
Consensus pattern (17 bp):
TAGTGGAGCAATGTGGC
Found at i:67816260 original size:60 final size:60
Alignment explanation
Indices: 67816167--67816280 Score: 194
Period size: 60 Copynumber: 1.9 Consensus size: 60
67816157 AAAAAAAAAC
* *
67816167 CTAGCCACTCCTTTTTCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCA
1 CTAGCCACTCCTTTTTCACCACCAACTCCACTAGCCACACATTCTCCACCACCAACTCCA
67816227 CTAGCCACT-CTTTTTCCACCACCAACTCCACTAGCCACACATTCTCCACCACCA
1 CTAGCCACTCCTTTTT-CACCACCAACTCCACTAGCCACACATTCTCCACCACCA
67816281 CTTGTACCTA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
59 6 0.12
60 45 0.88
ACGTcount: A:0.25, C:0.48, G:0.04, T:0.23
Consensus pattern (60 bp):
CTAGCCACTCCTTTTTCACCACCAACTCCACTAGCCACACATTCTCCACCACCAACTCCA
Found at i:67816275 original size:30 final size:30
Alignment explanation
Indices: 67816167--67816280 Score: 165
Period size: 30 Copynumber: 3.8 Consensus size: 30
67816157 AAAAAAAAAC
* * *
67816167 CTAGCCACTCCTTTTTCACCACCAACTCCA
1 CTAGCCACACATTTTCCACCACCAACTCCA
*
67816197 CTAGCCACACCTTTTCCACCACCAACTCCA
1 CTAGCCACACATTTTCCACCACCAACTCCA
* *
67816227 CTAGCCACTCTTTTTCCACCACCAACTCCA
1 CTAGCCACACATTTTCCACCACCAACTCCA
*
67816257 CTAGCCACACATTCTCCACCACCA
1 CTAGCCACACATTTTCCACCACCA
67816281 CTTGTACCTA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 77 1.00
ACGTcount: A:0.25, C:0.48, G:0.04, T:0.23
Consensus pattern (30 bp):
CTAGCCACACATTTTCCACCACCAACTCCA
Found at i:67816891 original size:27 final size:27
Alignment explanation
Indices: 67816861--67817007 Score: 117
Period size: 25 Copynumber: 5.6 Consensus size: 27
67816851 ATTTTAAATT
*
67816861 CTATATTACGTATATATATATTTTATA
1 CTATATTATGTATATATATATTTTATA
* * *
67816888 CTATTTTAT-T-TATATATCTTTAATA
1 CTATATTATGTATATATATATTTTATA
* * *
67816913 TTATATTATTTATATATATATTTTCTA
1 CTATATTATGTATATATATATTTTATA
* * * *
67816940 C-ATGTTATCTTATGTATATATCTTA-A
1 CTATATTAT-GTATATATATATTTTATA
* *
67816966 CTATATTATGTATATAT-T-TTTAACA
1 CTATATTATGTATATATATATTTTATA
*
67816991 CTATATTATGTACATAT
1 CTATATTATGTATATAT
67817008 TTTTAATATT
Statistics
Matches: 95, Mismatches: 20, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
24 3 0.03
25 38 0.40
26 16 0.17
27 38 0.40
ACGTcount: A:0.34, C:0.08, G:0.03, T:0.54
Consensus pattern (27 bp):
CTATATTATGTATATATATATTTTATA
Found at i:67817152 original size:16 final size:16
Alignment explanation
Indices: 67817133--67817213 Score: 69
Period size: 16 Copynumber: 4.8 Consensus size: 16
67817123 ATTTCTATTT
67817133 TATTTT-TTATTTTCAA
1 TATTTTATTATTTT-AA
67817149 TATTAATTATTATTATTCTAA
1 TATT--TTATTA-T-TT-TAA
67817170 TATTTTGA-TATTTTAA
1 TATTTT-ATTATTTTAA
67817186 TATTTTA-TATTTTATA
1 TATTTTATTATTTTA-A
67817202 TATTTTATTATT
1 TATTTTATTATT
67817214 CACATCATTG
Statistics
Matches: 56, Mismatches: 0, Indels: 17
0.77 0.00 0.23
Matches are distributed among these distances:
15 8 0.14
16 21 0.38
17 6 0.11
18 3 0.05
19 7 0.12
20 2 0.04
21 8 0.14
22 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.65
Consensus pattern (16 bp):
TATTTTATTATTTTAA
Found at i:67817197 original size:7 final size:8
Alignment explanation
Indices: 67817162--67817213 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
67817152 TAATTATTAT
*
67817162 TATTCTAA
1 TATTTTAA
*
67817170 TATTTTGA
1 TATTTTAA
67817178 TATTTTAA
1 TATTTTAA
67817186 TATTTT-A
1 TATTTTAA
67817193 TATTTTATA
1 TATTTTA-A
*
67817202 TATTTTAT
1 TATTTTAA
67817210 TATT
1 TATT
67817214 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:67818773 original size:12 final size:12
Alignment explanation
Indices: 67818756--67818791 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
67818746 AACATATTGA
67818756 CATTCATGCATT
1 CATTCATGCATT
67818768 CATTCATGCATT
1 CATTCATGCATT
*
67818780 CATTCATACATT
1 CATTCATGCATT
67818792 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:67826258 original size:45 final size:41
Alignment explanation
Indices: 67826164--67826271 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 41
67826154 TTATGCTTAA
*
67826164 GATGAAAACCCGAAAAGGGCATCTTAAAAAAAAAAGATCAG
1 GATGAAAACCCGAAAAGGGCGTCTTAAAAAAAAAAGATCAG
** * * *
67826205 GGCGAAAACCCGAAAAGGGCGTCTTGATTAGTACAAAAAGATTAG
1 GATGAAAACCCGAAAAGGGCGTCTT-A--A-AAAAAAAAGATCAG
*
67826250 GATGAAAACCCG-AGAGGGCGTC
1 GATGAAAACCCGAAAAGGGCGTC
67826272 CTAATGAAAC
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
41 22 0.41
42 1 0.02
44 10 0.19
45 21 0.39
ACGTcount: A:0.44, C:0.17, G:0.26, T:0.14
Consensus pattern (41 bp):
GATGAAAACCCGAAAAGGGCGTCTTAAAAAAAAAAGATCAG
Found at i:67827220 original size:69 final size:69
Alignment explanation
Indices: 67827046--67827220 Score: 217
Period size: 70 Copynumber: 2.5 Consensus size: 69
67827036 CTTTCCAAGG
* ** *
67827046 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
67827111 TTTT
66 TTTT
* ** * *
67827115 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT-
67827180 TGTTTT
64 TGTTTT
** *
67827186 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
67827221 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
69 31 0.34
70 55 0.60
71 5 0.05
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.34
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
TTTT
Found at i:67827599 original size:76 final size:75
Alignment explanation
Indices: 67827238--67827579 Score: 413
Period size: 76 Copynumber: 4.5 Consensus size: 75
67827228 TTTGTTTTTC
* * *
67827238 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
67827303 GTTGTTAAAAA
66 GTT-TTAAAAA
* *
67827314 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
67827379 GTTTT---CA
66 GTTTTAAAAA
* * * * *
67827386 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
67827451 GTTTTCAAAAAAAA
66 GTTTT----AAAAA
* * * *
67827465 AAAATCAACTTATATTGCGAGATGTGAGTTGAGCCTCAGTTCACATGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG--GACACGCTGAGGTATTTTCAATTT
* *
67827530 CTATTTT-TAAA
64 CTGTTTTAAAAA
* * *
67827541 AAGATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG
67827580 ATTACACACT
Statistics
Matches: 234, Mismatches: 23, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
72 66 0.28
75 2 0.01
76 103 0.44
79 36 0.15
81 27 0.12
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTAAAAA
Found at i:67828167 original size:73 final size:72
Alignment explanation
Indices: 67827983--67828235 Score: 400
Period size: 73 Copynumber: 3.5 Consensus size: 72
67827973 TTTGAAAGAA
*
67827983 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
67828048 TCAAAAT
66 TCAAAAT
*
67828055 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TT
67828120 TTCAAAAT
65 TTCAAAAT
* * * *
67828128 TCAACCCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
*
67828193 TCAAAAAAA
66 TC--AAAAT
67828202 TCAACTCATATTGCGA-AAAGTGAGTTGAGCCTCA
1 TCAACTCATATTGCGAGAAA-TGAGTTGAGCCTCA
67828236 GTTCACATGT
Statistics
Matches: 168, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
72 64 0.38
73 71 0.42
74 33 0.20
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (72 bp):
TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
TCAAAAT
Found at i:67828943 original size:30 final size:30
Alignment explanation
Indices: 67828907--67829020 Score: 183
Period size: 30 Copynumber: 3.8 Consensus size: 30
67828897 TAAAAAAAAC
*
67828907 CTAGCCACTCCTTTTCCACCACCAACTCCA
1 CTAGCCACACCTTTTCCACCACCAACTCCA
67828937 CTAGCCACACCTTTTCCACCACCAACTCCA
1 CTAGCCACACCTTTTCCACCACCAACTCCA
* *
67828967 CTAGCCACTCTTTTTCCACCACCAACTCCA
1 CTAGCCACACCTTTTCCACCACCAACTCCA
* *
67828997 CTAGCCACACATTCTCCACCACCA
1 CTAGCCACACCTTTTCCACCACCA
67829021 CTTGTACCTA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 78 1.00
ACGTcount: A:0.25, C:0.49, G:0.04, T:0.22
Consensus pattern (30 bp):
CTAGCCACACCTTTTCCACCACCAACTCCA
Found at i:67829143 original size:29 final size:27
Alignment explanation
Indices: 67829102--67829155 Score: 90
Period size: 29 Copynumber: 1.9 Consensus size: 27
67829092 TTTGTATATG
67829102 GGGGGGGATTTTTTTGGAGAGTTTTGA
1 GGGGGGGATTTTTTTGGAGAGTTTTGA
67829129 GGGGGGGATTTTTTTTTGGAGAGTTTT
1 GGGGGGGA--TTTTTTTGGAGAGTTTT
67829156 TGGGAGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 8 0.32
29 17 0.68
ACGTcount: A:0.13, C:0.00, G:0.43, T:0.44
Consensus pattern (27 bp):
GGGGGGGATTTTTTTGGAGAGTTTTGA
Found at i:67829563 original size:23 final size:23
Alignment explanation
Indices: 67829536--67829594 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
67829526 CCTTTTTTGT
67829536 TATTATTATATT-TCTTAATATTA
1 TATTATTATATTCTCTTAATA-TA
*
67829559 TATTATATATATTCTTTTAATATA
1 TATTAT-TATATTCTCTTAATATA
* *
67829583 TTTTAATATATT
1 TATTATTATATT
67829595 AGGTATATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 12 0.39
24 12 0.39
25 7 0.23
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (23 bp):
TATTATTATATTCTCTTAATATA
Found at i:67829651 original size:25 final size:25
Alignment explanation
Indices: 67829623--67829766 Score: 87
Period size: 25 Copynumber: 5.6 Consensus size: 25
67829613 ATATTACGTA
* *
67829623 TATATATATTTTATACTATTTTATT
1 TATATATATTTAATACTATATTATT
* *
67829648 TATATATCTTTAATATTATATTATT
1 TATATATATTTAATACTATATTATT
* * *
67829673 TATATATATATT-TTTCTACATGTTATCT
1 TATATATAT-TTAATACT--ATATTAT-T
*
67829701 TATGTATATATCTT-A-ACTATATTATG
1 TA--TATATAT-TTAATACTATATTATT
* * *
67829727 TATATATTTTTAACACTATATTATG
1 TATATATATTTAATACTATATTATT
* *
67829752 TACATATTTTTAATA
1 TATATATATTTAATA
67829767 TTATCACGTA
Statistics
Matches: 94, Mismatches: 17, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
23 2 0.02
24 7 0.07
25 55 0.59
26 4 0.04
27 12 0.13
28 3 0.03
29 2 0.02
30 9 0.10
ACGTcount: A:0.34, C:0.07, G:0.03, T:0.56
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATT
Found at i:67829939 original size:16 final size:15
Alignment explanation
Indices: 67829915--67829962 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
67829905 TAATTATTAT
*
67829915 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
67829931 TATTTTAATATTTTA
1 TATTTTAATATTTTA
67829946 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
67829962 T
1 T
67829963 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:67829950 original size:7 final size:8
Alignment explanation
Indices: 67829915--67829966 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
67829905 TAATTATTAT
*
67829915 TATTCTAA
1 TATTTTAA
*
67829923 TATTTTGA
1 TATTTTAA
67829931 TATTTTAA
1 TATTTTAA
67829939 TATTTT-A
1 TATTTTAA
67829946 TATTTTATA
1 TATTTTA-A
*
67829955 TATTTTAT
1 TATTTTAA
67829963 TATT
1 TATT
67829967 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:67833712 original size:17 final size:18
Alignment explanation
Indices: 67833672--67833713 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
67833662 TTGTTATAAC
67833672 AAAATTATTATTTAAATAT
1 AAAA-TATTATTTAAATAT
* *
67833691 TAAATATT-TTTAATTAT
1 AAAATATTATTTAAATAT
67833708 AAAATA
1 AAAATA
67833714 ATAAAAAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 13 0.65
18 4 0.20
19 3 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AAAATATTATTTAAATAT
Found at i:67835544 original size:18 final size:18
Alignment explanation
Indices: 67835505--67835546 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
67835495 TCTCTCTAAG
* *
67835505 TTTTTCTCCTTTTATTTG
1 TTTTCCTCCTTTTATTTA
67835523 TTTTCCTCC-TTTATTCTA
1 TTTTCCTCCTTTTATT-TA
67835541 TTTTCC
1 TTTTCC
67835547 AACACAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.07, C:0.24, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTCCTCCTTTTATTTA
Found at i:67847276 original size:15 final size:15
Alignment explanation
Indices: 67847253--67847284 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
67847243 AGGGGTAATG
67847253 TTGCAACATTAAGGA
1 TTGCAACATTAAGGA
*
67847268 TTGCGACATTAAGGA
1 TTGCAACATTAAGGA
67847283 TT
1 TT
67847285 CATGTCACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (15 bp):
TTGCAACATTAAGGA
Found at i:67847864 original size:13 final size:13
Alignment explanation
Indices: 67847846--67847873 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
67847836 GCCGATCACT
67847846 TTATGACTTTAAA
1 TTATGACTTTAAA
67847859 TTATGACTTTAAA
1 TTATGACTTTAAA
67847872 TT
1 TT
67847874 TTATGGTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (13 bp):
TTATGACTTTAAA
Found at i:67864451 original size:44 final size:45
Alignment explanation
Indices: 67864364--67864456 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 45
67864354 AAAATTGTAA
* *
67864364 ATTAAATTATAATATTTTTAAATGTGTAATAATTGTCATAACTTCT
1 ATTAAATTATAATATTTCTAAA-GTGTAATAATTATCATAACTTCT
*
67864410 ATTAAATTATAATTATTTCTAAA-TGT-ATAATTATTATAACTTCT
1 ATTAAATTATAA-TATTTCTAAAGTGTAATAATTATCATAACTTCT
67864454 ATT
1 ATT
67864457 CTACTTCAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 19 0.44
45 3 0.07
46 12 0.28
47 9 0.21
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.49
Consensus pattern (45 bp):
ATTAAATTATAATATTTCTAAAGTGTAATAATTATCATAACTTCT
Found at i:67869297 original size:61 final size:60
Alignment explanation
Indices: 67869227--67869404 Score: 161
Period size: 61 Copynumber: 3.0 Consensus size: 60
67869217 TTGTTAAATT
*
67869227 ATATTTAATAATAATAATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGA
1 ATATTTAATAATAATAATTTTATA-TATTATATATTATGATTTTAATAAATTCATATAAGA
* * * * * *
67869288 ATATTTAATACTAAGAATTTTATTAAATTATATATT-T--TTGTTAAATTATATTTA-ATAATA
1 ATATTTAATAATAATAATTTTA-TATATTATATATTATGATT-TT-AA-TAAATTCATATAAGA
* * *
67869348 ATTATTTTA-AATTAT-ATTTTATAATATTATATATTATAATTTTAATAAATTCATATA
1 A-TATTTAATAATAATAATTTTAT-ATATTATATATTATGATTTTAATAAATTCATATA
67869405 TTTTATCAAA
Statistics
Matches: 93, Mismatches: 14, Indels: 21
0.73 0.11 0.16
Matches are distributed among these distances:
58 3 0.03
59 25 0.27
60 17 0.18
61 44 0.47
62 4 0.04
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (60 bp):
ATATTTAATAATAATAATTTTATATATTATATATTATGATTTTAATAAATTCATATAAGA
Found at i:67869357 original size:26 final size:25
Alignment explanation
Indices: 67869319--67869377 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
67869309 ATTAAATTAT
*
67869319 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
67869345 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
67869371 ATATTAT
1 ATATTAT
67869378 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:67869376 original size:15 final size:15
Alignment explanation
Indices: 67869332--67869387 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
67869322 TTTTTGTTAA
*
67869332 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
67869347 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
67869358 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
67869373 ATTATATATTATAAT
1 ATTATATTTTATAAT
67869388 TTTAATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:67869403 original size:24 final size:22
Alignment explanation
Indices: 67869358--67869426 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
67869348 ATTATTTTAA
67869358 ATTATATTTTATAATATTATAT
1 ATTATATTTTATAATATTATAT
* *
67869380 ATTATAATTT-TAATA-AAT-T
1 ATTATATTTTATAATATTATAT
67869399 CA-TATATTTTATCAA-ATTATAT
1 -ATTATATTTTAT-AATATTATAT
67869421 ATTATA
1 ATTATA
67869427 AAAAAATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
19 8 0.22
20 5 0.14
21 10 0.27
22 14 0.38
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTATATTTTATAATATTATAT
Found at i:67869422 original size:17 final size:17
Alignment explanation
Indices: 67869304--67869444 Score: 61
Period size: 17 Copynumber: 8.6 Consensus size: 17
67869294 AATACTAAGA
*
67869304 ATTTTATTAAATTATAT
1 ATTTTAATAAATTATAT
**
67869321 ATTTTTGTTAAA-T-TAT
1 A-TTTTAATAAATTATAT
*
67869337 A-TTTAAT-AATAAT-T
1 ATTTTAATAAATTATAT
* *
67869351 ATTTTAAATTATATTTTAT
1 ATTTT-AA-TAAATTATAT
* *
67869370 AATATT-ATATATTATA-
1 -ATTTTAATAAATTATAT
67869386 ATTTTAATAAATTCATAT
1 ATTTTAATAAATT-ATAT
67869404 ATTTT-ATCAAATTATAT
1 ATTTTAAT-AAATTATAT
* *
67869421 ATTATAA-AAA-AATAT
1 ATTTTAATAAATTATAT
67869436 A-TTTAATAA
1 ATTTTAATAA
67869445 TAATTATGTT
Statistics
Matches: 95, Mismatches: 14, Indels: 32
0.67 0.10 0.23
Matches are distributed among these distances:
13 2 0.02
14 10 0.11
15 15 0.16
16 15 0.16
17 24 0.25
18 24 0.25
19 1 0.01
20 4 0.04
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (17 bp):
ATTTTAATAAATTATAT
Found at i:67869693 original size:16 final size:16
Alignment explanation
Indices: 67869672--67869739 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
67869662 GATTTGCTAT
67869672 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
67869688 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
67869704 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
67869720 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
67869736 TACA
1 TACA
67869740 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:67870364 original size:2 final size:2
Alignment explanation
Indices: 67870359--67870384 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
67870349 ATTTAATTTA
67870359 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
67870385 TTTTGGTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:67872499 original size:4 final size:4
Alignment explanation
Indices: 67872470--67872510 Score: 50
Period size: 4 Copynumber: 10.2 Consensus size: 4
67872460 CATCGACCAT
67872470 CATA CATAA CATA CACT- CAT- CATA CATA CATA CATA CATA C
1 CATA CAT-A CATA CA-TA CATA CATA CATA CATA CATA CATA C
67872511 CTTATCAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 4 0.12
4 25 0.74
5 5 0.15
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:67874011 original size:21 final size:20
Alignment explanation
Indices: 67873987--67874033 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 20
67873977 GGTCCCGCCT
67873987 AAGAAAGACGACGGCGGTGAA
1 AAGAAAGA-GACGGCGGTGAA
*
67874008 AAG-AA-AGACGGCGGAGAA
1 AAGAAAGAGACGGCGGTGAA
67874026 AAGAAAGA
1 AAGAAAGA
67874034 TGCCGGCGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 14 0.61
19 3 0.13
20 3 0.13
21 3 0.13
ACGTcount: A:0.51, C:0.11, G:0.36, T:0.02
Consensus pattern (20 bp):
AAGAAAGAGACGGCGGTGAA
Found at i:67874019 original size:18 final size:18
Alignment explanation
Indices: 67873996--67874033 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
67873986 TAAGAAAGAC
*
67873996 GACGGCGGTGAAAAGAAA
1 GACGGCGGAGAAAAGAAA
67874014 GACGGCGGAGAAAAGAAA
1 GACGGCGGAGAAAAGAAA
67874032 GA
1 GA
67874034 TGCCGGCGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.39, T:0.03
Consensus pattern (18 bp):
GACGGCGGAGAAAAGAAA
Found at i:67874322 original size:33 final size:33
Alignment explanation
Indices: 67874277--67874354 Score: 129
Period size: 33 Copynumber: 2.4 Consensus size: 33
67874267 ACATCAACAT
*
67874277 GAATCAAGGGTATATGTCTCATCCTGGGTATGC
1 GAATCAAGGGTATATGTCTCACCCTGGGTATGC
* *
67874310 GAGTCAAGGGTATATGTCTCACCCTGGGTATGT
1 GAATCAAGGGTATATGTCTCACCCTGGGTATGC
67874343 GAATCAAGGGTA
1 GAATCAAGGGTA
67874355 CATGGTGGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (33 bp):
GAATCAAGGGTATATGTCTCACCCTGGGTATGC
Found at i:67877423 original size:29 final size:30
Alignment explanation
Indices: 67877390--67877453 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 30
67877380 ATTTTGATTC
*
67877390 TAATTAATAA-AAATATTTTTATCTATATT
1 TAATTAATAATAAATATTTATATCTATATT
*
67877419 TAATT-ATAATAAATATTTATATTTATATT
1 TAATTAATAATAAATATTTATATCTATATT
67877448 TAATTA
1 TAATTA
67877454 GATTTTCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 4 0.13
29 27 0.87
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (30 bp):
TAATTAATAATAAATATTTATATCTATATT
Found at i:67880829 original size:76 final size:76
Alignment explanation
Indices: 67880703--67880856 Score: 272
Period size: 76 Copynumber: 2.0 Consensus size: 76
67880693 AGTATCAATG
* * *
67880703 TAGGAGGAAATGGGTTTAAGTGCGCTAAAACATATTATTCTCCTATTTATGGGTTAGGAGAGTTT
1 TAGGAGGAAATGGGTTTAAGTGCGCTAAAACACATTATTCTCCTATTTATGGGTCAGGAGAGATT
67880768 ATGAGTAATTT
66 ATGAGTAATTT
*
67880779 TAGGAGGAAATGGGTTTAAGTGCGCTAAAACACATTATTCTCTTATTTATGGGTCAGGAGAGATT
1 TAGGAGGAAATGGGTTTAAGTGCGCTAAAACACATTATTCTCCTATTTATGGGTCAGGAGAGATT
67880844 ATGAGTAATTT
66 ATGAGTAATTT
67880855 TA
1 TA
67880857 AGTATTATCT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (76 bp):
TAGGAGGAAATGGGTTTAAGTGCGCTAAAACACATTATTCTCCTATTTATGGGTCAGGAGAGATT
ATGAGTAATTT
Found at i:67882846 original size:34 final size:34
Alignment explanation
Indices: 67882787--67882853 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
67882777 GTAAAATTTA
*
67882787 TTTTTTATATTATAGTTAAATTTAAATGTATATT
1 TTTTTTATATTATAGTTAAATTTAAATGAATATT
67882821 TTTTTATATATTATAGTTAAA-TTAAATGAATAT
1 TTTTT-TATATTATAGTTAAATTTAAATGAATAT
67882854 ATGAATCAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 16 0.52
35 15 0.48
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (34 bp):
TTTTTTATATTATAGTTAAATTTAAATGAATATT
Found at i:67883352 original size:6 final size:6
Alignment explanation
Indices: 67883341--67883375 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
67883331 TTCTGGTCCT
67883341 TCCCAA TCCCAA TCCCAA TCCCAA TCCCAA TCCCA
1 TCCCAA TCCCAA TCCCAA TCCCAA TCCCAA TCCCA
67883376 TTCTCTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.31, C:0.51, G:0.00, T:0.17
Consensus pattern (6 bp):
TCCCAA
Found at i:67884358 original size:15 final size:14
Alignment explanation
Indices: 67884325--67884364 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
67884315 AATACATTTT
67884325 TTTTAATTATTAAA
1 TTTTAATTATTAAA
*
67884339 TTTTAATTTATTATA
1 TTTTAA-TTATTAAA
*
67884354 TTTTAGTTATT
1 TTTTAATTATT
67884365 GTACCGTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (14 bp):
TTTTAATTATTAAA
Found at i:67884927 original size:18 final size:18
Alignment explanation
Indices: 67884904--67884944 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
67884894 TTACAGTTAA
67884904 AAAATACTTTTAAGAAAT
1 AAAATACTTTTAAGAAAT
*
67884922 AAAATATTTTTAAGAAAT
1 AAAATACTTTTAAGAAAT
*
67884940 GAAAT
1 AAAAT
67884945 GTCTATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.34
Consensus pattern (18 bp):
AAAATACTTTTAAGAAAT
Found at i:67885463 original size:66 final size:67
Alignment explanation
Indices: 67885373--67885506 Score: 225
Period size: 66 Copynumber: 2.0 Consensus size: 67
67885363 AGTGTTTTTC
** *
67885373 AAAAGCACCTCTGAACAGTTAAAAATTTAAACCAAAAATAATTTGTGCTACTTTTAGAGCTAGAA
1 AAAAGCACCTCTGAACAGTTAAAAATTTAAACCAAAAATAATTCATACTACTTTTAGAGCTAGAA
67885438 GT
66 GT
*
67885440 AAAA-CACTTCTGAACAGTTAAAAATTTAAACCAAAAATAATTCATACTACTTTTAGAGCTAGAA
1 AAAAGCACCTCTGAACAGTTAAAAATTTAAACCAAAAATAATTCATACTACTTTTAGAGCTAGAA
67885504 GT
66 GT
67885506 A
1 A
67885507 TTTTTTTAAG
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
66 59 0.94
67 4 0.06
ACGTcount: A:0.46, C:0.15, G:0.11, T:0.28
Consensus pattern (67 bp):
AAAAGCACCTCTGAACAGTTAAAAATTTAAACCAAAAATAATTCATACTACTTTTAGAGCTAGAA
GT
Found at i:67890221 original size:21 final size:23
Alignment explanation
Indices: 67890192--67890233 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
67890182 GTGCTTTTAG
67890192 GTAATCTTACATTCCA-TCAATC
1 GTAATCTTACATTCCAGTCAATC
67890214 GTAA-CTTACATTCCAGTCAA
1 GTAATCTTACATTCCAGTCAA
67890234 ATGAATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.33
Consensus pattern (23 bp):
GTAATCTTACATTCCAGTCAATC
Found at i:67899554 original size:25 final size:25
Alignment explanation
Indices: 67899520--67899570 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
67899510 CGCTCATCTA
67899520 AAGAAGCAGAATGGTTAAGAAATTT
1 AAGAAGCAGAATGGTTAAGAAATTT
67899545 AAGAAGCAGAATGGTTAAGAAATTT
1 AAGAAGCAGAATGGTTAAGAAATTT
67899570 A
1 A
67899571 CTTTATGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.04, G:0.24, T:0.24
Consensus pattern (25 bp):
AAGAAGCAGAATGGTTAAGAAATTT
Found at i:67902636 original size:5 final size:5
Alignment explanation
Indices: 67902628--67902682 Score: 64
Period size: 5 Copynumber: 11.6 Consensus size: 5
67902618 GATATTATGT
*
67902628 TATTA TATTA T-GT- TATTA TATTA CTATTA TATTA TATTA TA-T- TATTA
1 TATTA TATTA TATTA TATTA TATTA -TATTA TATTA TATTA TATTA TATTA
67902675 TATTA TAT
1 TATTA TAT
67902683 AACATAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
3 3 0.07
4 4 0.09
5 31 0.72
6 5 0.12
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:67902675 original size:8 final size:8
Alignment explanation
Indices: 67902620--67902680 Score: 54
Period size: 8 Copynumber: 7.4 Consensus size: 8
67902610 AAGTAAATGA
*
67902620 TATTATGT
1 TATTATAT
67902628 TATTATAT
1 TATTATAT
67902636 TATGT-TAT
1 TAT-TATAT
*
67902644 TA-TATTAC
1 TATTA-TAT
67902652 TATTATATT
1 TATTATA-T
67902661 ATATTATAT
1 -TATTATAT
67902670 TATTATAT
1 TATTATAT
67902678 TAT
1 TAT
67902681 ATAACATAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
6 1 0.02
8 32 0.73
9 4 0.09
10 7 0.16
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (8 bp):
TATTATAT
Found at i:67902681 original size:13 final size:13
Alignment explanation
Indices: 67902619--67902682 Score: 83
Period size: 13 Copynumber: 4.7 Consensus size: 13
67902609 TAAGTAAATG
*
67902619 ATATTATGTTATT
1 ATATTATATTATT
*
67902632 ATATTATGTTATT
1 ATATTATATTATT
67902645 ATATTACTATTATATT
1 ATATTA-TA-T-TATT
67902661 ATATTATATTATT
1 ATATTATATTATT
67902674 ATATTATAT
1 ATATTATAT
67902683 AACATAAAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
13 32 0.68
14 2 0.04
15 3 0.06
16 10 0.21
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (13 bp):
ATATTATATTATT
Found at i:67903987 original size:22 final size:20
Alignment explanation
Indices: 67903945--67903988 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
67903935 AAACTATTTG
*
67903945 AATAGAAATTATGAAATTGA
1 AATAGAAAATATGAAATTGA
67903965 AATAGAAAGATATGAGAATTGA
1 AATAGAAA-ATATGA-AATTGA
67903987 AA
1 AA
67903989 GTGTTATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.38
21 5 0.24
22 8 0.38
ACGTcount: A:0.57, C:0.00, G:0.18, T:0.25
Consensus pattern (20 bp):
AATAGAAAATATGAAATTGA
Found at i:67909006 original size:26 final size:26
Alignment explanation
Indices: 67908975--67909056 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
67908965 TGAAATGCCC
67908975 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
67909001 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
67909027 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
67909053 ATCA
1 ATCA
67909057 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:67911964 original size:15 final size:15
Alignment explanation
Indices: 67911941--67911983 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
67911931 TAATTGTGAT
*
67911941 TAAGATTTAATTAAC
1 TAAGGTTTAATTAAC
* *
67911956 TAAGGTTTAACTAAT
1 TAAGGTTTAATTAAC
67911971 TAAGG-TTAATTAA
1 TAAGGTTTAATTAA
67911984 GGTTTAATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.40
Consensus pattern (15 bp):
TAAGGTTTAATTAAC
Found at i:67916968 original size:75 final size:75
Alignment explanation
Indices: 67916878--67917027 Score: 246
Period size: 75 Copynumber: 2.0 Consensus size: 75
67916868 ACAGGATTTG
* * *
67916878 AGATTTACAATATCAAAATTTTTTATTACATAGTTATTATGCGAGTAATTTTTTTATTTTAAAAT
1 AGATTTACAATATCAAAATTTTTTATTACATAATTATCATGCGAGTAATTTTTTAATTTTAAAAT
* *
67916943 ATCACACTAA
66 AACAAACTAA
*
67916953 AGATTTACAATATCAAAGTTTTTTATTACATAATTATCATGCGAGTAATTTTTTAATTTTAAAAT
1 AGATTTACAATATCAAAATTTTTTATTACATAATTATCATGCGAGTAATTTTTTAATTTTAAAAT
67917018 AACAAACTAA
66 AACAAACTAA
67917028 CATATTTAAC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 69 1.00
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (75 bp):
AGATTTACAATATCAAAATTTTTTATTACATAATTATCATGCGAGTAATTTTTTAATTTTAAAAT
AACAAACTAA
Found at i:67917525 original size:13 final size:13
Alignment explanation
Indices: 67917507--67917531 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67917497 ACCTGTTCGT
67917507 ATTAATTTTTTAG
1 ATTAATTTTTTAG
67917520 ATTAATTTTTTA
1 ATTAATTTTTTA
67917532 TATAGAACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
ATTAATTTTTTAG
Found at i:67930933 original size:10 final size:10
Alignment explanation
Indices: 67930918--67930944 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
67930908 GGAAATCAGA
67930918 AAATAAAAAT
1 AAATAAAAAT
67930928 AAATAAAAAT
1 AAATAAAAAT
67930938 AAATAAA
1 AAATAAA
67930945 CAGCACCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:67934271 original size:45 final size:45
Alignment explanation
Indices: 67934207--67934297 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
67934197 GACATTCTGA
67934207 ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
1 ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
67934252 ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
1 ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
67934297 A
1 A
67934298 ATAATAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (45 bp):
ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
Found at i:67935460 original size:15 final size:15
Alignment explanation
Indices: 67935440--67935469 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67935430 TATTTTATTT
*
67935440 ATATTAGGATAATTA
1 ATATTAAGATAATTA
67935455 ATATTAAGATAATTA
1 ATATTAAGATAATTA
67935470 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:67935497 original size:27 final size:26
Alignment explanation
Indices: 67935436--67935498 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
67935426 AGACTATTTT
67935436 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
67935463 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
67935491 ATTTTATT
1 ATTTTATT
67935499 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:67935513 original size:10 final size:10
Alignment explanation
Indices: 67935494--67935525 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
67935484 TTTTAGGATT
67935494 TTAT-TTTAA
1 TTATCTTTAA
67935503 TTATCTTTAA
1 TTATCTTTAA
67935513 TTATCTTTAA
1 TTATCTTTAA
67935523 TTA
1 TTA
67935526 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:67935757 original size:18 final size:18
Alignment explanation
Indices: 67935734--67935772 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
67935724 GGTCATTTAA
67935734 AAGCCGAGGATCGAACCC
1 AAGCCGAGGATCGAACCC
67935752 AAGCCGAGGATCGAACCC
1 AAGCCGAGGATCGAACCC
67935770 AAG
1 AAG
67935773 GTGGAATGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.36, C:0.31, G:0.28, T:0.05
Consensus pattern (18 bp):
AAGCCGAGGATCGAACCC
Found at i:67947198 original size:34 final size:34
Alignment explanation
Indices: 67947159--67947235 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
67947149 TAAAAAATTC
*
67947159 ATGTCTATACA-AACATATATCTATTTGGACGGTT
1 ATGTCTATA-AGAACATATATCTATTTGGACAGTT
* *
67947193 ATGTCTATAAGAAGATATATCTATTTGGCCAGTT
1 ATGTCTATAAGAACATATATCTATTTGGACAGTT
67947227 ATGTCTATA
1 ATGTCTATA
67947236 TGAAAGACAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
33 1 0.03
34 38 0.97
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (34 bp):
ATGTCTATAAGAACATATATCTATTTGGACAGTT
Found at i:67957639 original size:112 final size:112
Alignment explanation
Indices: 67957442--67957665 Score: 421
Period size: 112 Copynumber: 2.0 Consensus size: 112
67957432 GTTTTAAGCA
* *
67957442 TTATTGCATTCTTCTATTCTTTGTACTCTTGTCGATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
1 TTATTGCATTCTGCTATTCTTTGTACTCTTGTCAATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
*
67957507 GAACCCTAGGATTGCATTGATTATTTATTTATACTGAAGTACACATC
66 GAACCCTAGGATTGCATTGATTATTTATTTATACGGAAGTACACATC
67957554 TTATTGCATTCTGCTATTCTTTGTACTCTTGTCAATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
1 TTATTGCATTCTGCTATTCTTTGTACTCTTGTCAATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
67957619 GAACCCTAGGATTGCATTGATTATTTATTTATACGGAAGTACACATC
66 GAACCCTAGGATTGCATTGATTATTTATTTATACGGAAGTACACATC
67957666 GTTTTAGTTA
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
112 109 1.00
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.42
Consensus pattern (112 bp):
TTATTGCATTCTGCTATTCTTTGTACTCTTGTCAATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
GAACCCTAGGATTGCATTGATTATTTATTTATACGGAAGTACACATC
Found at i:67957866 original size:19 final size:19
Alignment explanation
Indices: 67957842--67957881 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
67957832 ATTATTGCAC
67957842 CAGATGATGATACGTTTTG
1 CAGATGATGATACGTTTTG
67957861 CAGATGATGATACGTTTTG
1 CAGATGATGATACGTTTTG
67957880 CA
1 CA
67957882 CTTTTGCAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (19 bp):
CAGATGATGATACGTTTTG
Found at i:67959639 original size:26 final size:26
Alignment explanation
Indices: 67959603--67959659 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
67959593 TGTCTGAAGG
67959603 AATATGTGTTGAACAAAAATGTTGCT
1 AATATGTGTTGAACAAAAATGTTGCT
*
67959629 AATATGTGTTGAACATAAATGTTGCT
1 AATATGTGTTGAACAAAAATGTTGCT
67959655 AATAT
1 AATAT
67959660 CATAGATACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.37
Consensus pattern (26 bp):
AATATGTGTTGAACAAAAATGTTGCT
Found at i:67975731 original size:17 final size:17
Alignment explanation
Indices: 67975694--67975734 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
67975684 TAATAATTTA
* *
67975694 AAAATTTTTAAAAATAT
1 AAAATTATTAAAAAAAT
67975711 -AAATTATTAAAAAAAT
1 AAAATTATTAAAAAAAT
67975727 AAAATTAT
1 AAAATTAT
67975735 ATTTTTACGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAATTATTAAAAAAAT
Found at i:67977901 original size:16 final size:18
Alignment explanation
Indices: 67977874--67977907 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
67977864 TGCAATTGTA
67977874 TATATAAATTTTA-ATTT
1 TATATAAATTTTATATTT
67977891 TATAT-AATTTTATATTT
1 TATATAAATTTTATATTT
67977908 AAATTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TATATAAATTTTATATTT
Found at i:67978347 original size:18 final size:18
Alignment explanation
Indices: 67978327--67978361 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
67978317 TTGGTTGAAT
67978327 TTTTAAAAA-TTTAAAAA
1 TTTTAAAAATTTTAAAAA
67978344 TTTTAAAAATTTTAAAAA
1 TTTTAAAAATTTTAAAAA
67978362 AAAATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TTTTAAAAATTTTAAAAA
Found at i:67978348 original size:9 final size:9
Alignment explanation
Indices: 67978327--67978361 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
67978317 TTGGTTGAAT
67978327 TTTTAAAAA
1 TTTTAAAAA
67978336 -TTTAAAAA
1 TTTTAAAAA
67978344 TTTTAAAAA
1 TTTTAAAAA
67978353 TTTTAAAAA
1 TTTTAAAAA
67978362 AAAATTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.32
9 17 0.68
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:67981166 original size:2 final size:2
Alignment explanation
Indices: 67981161--67981191 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
67981151 CTCTTTCTTT
67981161 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
67981192 ATATGTGATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:67993586 original size:20 final size:19
Alignment explanation
Indices: 67993549--67993587 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
67993539 AAAACTTGAA
*
67993549 AAAATATTAACATAAAATT
1 AAAATATTAAAATAAAATT
*
67993568 AAAATATCTAAAATTAAATT
1 AAAATAT-TAAAATAAAATT
67993588 TTCTTTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATATTAAAATAAAATT
Found at i:67999199 original size:19 final size:18
Alignment explanation
Indices: 67999170--67999251 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 18
67999160 AATGGATAAA
67999170 TTTAGATAATTTTTAATATT
1 TTTA-ATAATTTTT-ATATT
*
67999190 TTTAATAA-TTTCATAATTT
1 TTTAATAATTTTTAT-A-TT
* *
67999209 TTTTATAAATTTTATATT
1 TTTAATAATTTTTATATT
*
67999227 TTTAATAATGATTTATATT
1 TTTAATAAT-TTTTATATT
67999246 TTTAAT
1 TTTAAT
67999252 TTTTAAACTA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
17 2 0.04
18 13 0.25
19 28 0.54
20 9 0.17
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTAATAATTTTTATATT
Found at i:68002168 original size:29 final size:31
Alignment explanation
Indices: 68002117--68002185 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
68002107 TATATATAGA
*
68002117 CTAAATAAAATAGTAAAATAATAA-AA-TAT
1 CTAATTAAAATAGTAAAATAATAATAATTAT
* *
68002146 CTTATTAAAATA-TTAAATAAATAATAATTAT
1 CTAATTAAAATAGTAAAAT-AATAATAATTAT
68002177 CTAATTAAA
1 CTAATTAAA
68002186 TAATTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 5 0.15
29 15 0.45
30 2 0.06
31 11 0.33
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.35
Consensus pattern (31 bp):
CTAATTAAAATAGTAAAATAATAATAATTAT
Found at i:68003068 original size:30 final size:30
Alignment explanation
Indices: 68003027--68003090 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
68003017 GAAAAATCAA
* * *
68003027 ATATTGGATCTTCCTAAGCTCTTAAACAAG
1 ATATTGAATCTTCCCAAGCTCCTAAACAAG
*
68003057 ATATTGAATCTTCCCAAGCTCCTAAACGAG
1 ATATTGAATCTTCCCAAGCTCCTAAACAAG
68003087 ATAT
1 ATAT
68003091 CTAGTTTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31
Consensus pattern (30 bp):
ATATTGAATCTTCCCAAGCTCCTAAACAAG
Found at i:68006170 original size:46 final size:46
Alignment explanation
Indices: 68006118--68006288 Score: 236
Period size: 46 Copynumber: 3.7 Consensus size: 46
68006108 GTGTGTTCTC
** *
68006118 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATAGTTGAAAGATACCATGGCAACG
*
68006164 TGATATGAAATGAATAAGACTATAGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATAGTTGAAAGATACCATGGCAACG
* * * *
68006210 TGATATGAAATGAACAAGACTATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAATAAGACCATAGTTGAAAGATACCATGGCAACG
* *
68006256 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 TGATATG-AAATGAATAAGACCATAGTTGAAAGA
68006289 CACTATGGTA
Statistics
Matches: 112, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 111 0.99
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATAGTTGAAAGATACCATGGCAACG
Found at i:68006500 original size:14 final size:14
Alignment explanation
Indices: 68006481--68006515 Score: 61
Period size: 14 Copynumber: 2.4 Consensus size: 14
68006471 TTATGAAGAT
68006481 AGATAAACGAAATA
1 AGATAAACGAAATA
68006495 AGATAAACGAAATA
1 AGATAAACGAAATA
68006509 AGTATAA
1 AG-ATAA
68006516 GTACATGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 16 0.80
15 4 0.20
ACGTcount: A:0.63, C:0.06, G:0.14, T:0.17
Consensus pattern (14 bp):
AGATAAACGAAATA
Found at i:68008941 original size:37 final size:37
Alignment explanation
Indices: 68008878--68008949 Score: 85
Period size: 37 Copynumber: 1.9 Consensus size: 37
68008868 TACACTTTCT
**
68008878 CAATTCAATATACATTTCAATTATTCACATA-TAATCA
1 CAATTCAATATACATTTCAACAATTCA-ATACTAATCA
*
68008915 CAATTCAATTTA-ATTTCATACAATTCAATACTAAT
1 CAATTCAATATACATTTCA-ACAATTCAATACTAAT
68008950 ACTTACCATG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
36 9 0.30
37 21 0.70
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (37 bp):
CAATTCAATATACATTTCAACAATTCAATACTAATCA
Found at i:68009315 original size:17 final size:18
Alignment explanation
Indices: 68009281--68009316 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
68009271 TGAATTTCTA
68009281 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
68009299 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
68009316 T
1 T
68009317 AACTTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:68009783 original size:17 final size:18
Alignment explanation
Indices: 68009756--68009799 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 18
68009746 CCTTCATTTC
68009756 TTTCTTTTATTCTTTTA-G
1 TTTC-TTTATTCTTTTATG
68009774 TTTCTTTATTCTTTTATG
1 TTTCTTTATTCTTTTATG
*
68009792 TTTATTTA
1 TTTCTTTA
68009800 CTTTATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.14, C:0.09, G:0.05, T:0.73
Consensus pattern (18 bp):
TTTCTTTATTCTTTTATG
Found at i:68009812 original size:23 final size:23
Alignment explanation
Indices: 68009769--68009812 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
68009759 CTTTTATTCT
**
68009769 TTTAGTTTCTTTATTCTTTTATG
1 TTTAGTTTCTTTATTAATTTATG
68009792 TTTA-TTTACTTTATTAATTTA
1 TTTAGTTT-CTTTATTAATTTA
68009813 ATAATAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.20, C:0.07, G:0.05, T:0.68
Consensus pattern (23 bp):
TTTAGTTTCTTTATTAATTTATG
Found at i:68009849 original size:18 final size:18
Alignment explanation
Indices: 68009808--68009856 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
68009798 TACTTTATTA
68009808 ATTTAATAAT-AATA-AT
1 ATTTAATAATAAATATAT
*
68009824 -TTTTATAATAAATATAT
1 ATTTAATAATAAATATAT
*
68009841 ATTTAATAACAAATAT
1 ATTTAATAATAAATAT
68009857 TTATATTACA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 8 0.30
16 4 0.15
17 2 0.07
18 13 0.48
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTTAATAATAAATATAT
Found at i:68010001 original size:19 final size:20
Alignment explanation
Indices: 68009979--68010023 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
68009969 TTCATAATAT
* *
68009979 AATAATATAATATTAA-TTA
1 AATAATAAAATAATAACTTA
68009998 AATAATAAAATAATAACTTA
1 AATAATAAAATAATAACTTA
*
68010018 ATTAAT
1 AATAAT
68010024 GGATAAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
AATAATAAAATAATAACTTA
Found at i:68010001 original size:24 final size:24
Alignment explanation
Indices: 68009977--68010022 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
68009967 ACTTCATAAT
*
68009977 ATAATAATATAAT--ATTAATTAA
1 ATAATAAAATAATAAATTAATTAA
*
68009999 ATAATAAAATAATAACTTAATTAA
1 ATAATAAAATAATAAATTAATTAA
68010023 TGGATAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
24 8 0.40
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
ATAATAAAATAATAAATTAATTAA
Found at i:68013104 original size:10 final size:10
Alignment explanation
Indices: 68013089--68013116 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
68013079 GTGGCCGACG
68013089 ACGGCGGTGC
1 ACGGCGGTGC
68013099 ACGGCGGTGC
1 ACGGCGGTGC
68013109 ACGGCGGT
1 ACGGCGGT
68013117 CCGGCGATCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.29, G:0.50, T:0.11
Consensus pattern (10 bp):
ACGGCGGTGC
Found at i:68013675 original size:3 final size:3
Alignment explanation
Indices: 68013620--68013782 Score: 60
Period size: 3 Copynumber: 55.7 Consensus size: 3
68013610 ACTTTTTCTC
*
68013620 ATT ATT -TT ATT -TT ATT -TT ATT -TT ATGT A-T ACT ATT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT
* ** *
68013660 -TT ATT ACT ATT ATT A-T ATTT ATT ATTT ATT AGA ATT AGT ATT ATT
1 ATT ATT ATT ATT ATT ATT A-TT ATT A-TT ATT ATT ATT ATT ATT ATT
* * * * * *
68013705 TTT ACTT AATG CTT A-T ATAT ATT ATAT AGT ATT ATT AAT AGT -TT ATT
1 ATT A-TT -ATT ATT ATT AT-T ATT AT-T ATT ATT ATT ATT ATT ATT ATT
* * *
68013752 ATT ATT ATT ATT TTT CTT AAT ATT A-T ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
68013783 GTATATATTC
Statistics
Matches: 117, Mismatches: 25, Indels: 36
0.66 0.14 0.20
Matches are distributed among these distances:
2 21 0.18
3 80 0.68
4 15 0.13
5 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:68013690 original size:19 final size:19
Alignment explanation
Indices: 68013631--68013683 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
68013621 TTATTTTATT
*
68013631 TTATTTTATTTTATGTA-TA
1 TTATTATATTTTAT-TACTA
*
68013650 CTATTATATTTTATTACTA
1 TTATTATATTTTATTACTA
68013669 TTATTATA-TTTATTA
1 TTATTATATTTTATTA
68013684 TTTATTAGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
18 9 0.30
19 21 0.70
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (19 bp):
TTATTATATTTTATTACTA
Done.