Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 227 of 250
Found at i:70001031 original size:91 final size:90
Alignment explanation
Indices: 70000865--70001100 Score: 222
Period size: 91 Copynumber: 2.6 Consensus size: 90
70000855 CTCCTTGGTT
* ** * * * *
70000865 TTAATGAGTTCATAGCCCAAAGTTTGGGTGGTCCTGCTAAGACGGACTTTATGAATTCATCGAAT
1 TTAATGAGTTCATAACCCAGGGTTTGGGTGGTCCTACTAAGACGGACTTGATGAACTCATCAAAT
* * *
70000930 ATATAGGATGAAACTACTAGATGCTC
66 ATATAAGATG-AACCACTAAATGCTC
* * * *
70000956 TTAATGAGTTCATAACCCAGGGTTTGGGTGGCCCTATTAAGACGAACTTGATGAAC-CTATTAAA
1 TTAATGAGTTCATAACCCAGGGTTTGGGTGGTCCTACTAAGACGGACTTGATGAACTC-ATCAAA
* * *
70001020 TTTATAAGATGAGCCACTAAATGTTC
65 TATATAAGATGAACCACTAAATGCTC
* * * * * * * *
70001046 TTAATGAATTCATATCTCAGGTTTTCGGTGGTCCTAGTGAGACGGATTTGATGAA
1 TTAATGAGTTCATAACCCAGGGTTTGGGTGGTCCTACTAAGACGGACTTGATGAA
70001101 TTCACTGAAT
Statistics
Matches: 117, Mismatches: 27, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
90 57 0.49
91 60 0.51
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (90 bp):
TTAATGAGTTCATAACCCAGGGTTTGGGTGGTCCTACTAAGACGGACTTGATGAACTCATCAAAT
ATATAAGATGAACCACTAAATGCTC
Found at i:70001112 original size:90 final size:90
Alignment explanation
Indices: 70000865--70001112 Score: 207
Period size: 90 Copynumber: 2.7 Consensus size: 90
70000855 CTCCTTGGTT
* * ** *
70000865 TTAATGAGTTCATAGCCCAAAGTTTGGGTGGTCCT-GCTAAGACGGACTTT-ATGAATTCATCGA
1 TTAATGAATTCATAACCCAGGGTTTCGGTGGTCCTAG-TAAGACGGA-TTTGATGAATTCAT-GA
* * * *
70000928 ATATATAGGATGAAACTACTAGATGCTC
63 ATTTATAAGATGAAACCACTAAATGCTC
* * * * * * * *
70000956 TTAATGAGTTCATAACCCAGGGTTTGGGTGGCCCTATTAAGACGAACTTGATGAA-CCTATTAAA
1 TTAATGAATTCATAACCCAGGGTTTCGGTGGTCCTAGTAAGACGGATTTGATGAATTC-A-TGAA
* *
70001020 TTTATAAGATG-AGCCACTAAATGTTC
64 TTTATAAGATGAAACCACTAAATGCTC
* * * *
70001046 TTAATGAATTCATATCTCAGGTTTTCGGTGGTCCTAGTGAGACGGATTTGATGAATTCACTGAAT
1 TTAATGAATTCATAACCCAGGGTTTCGGTGGTCCTAGTAAGACGGATTTGATGAATTCA-TGAAT
70001111 TT
65 TT
70001113 TTAAATTGAA
Statistics
Matches: 124, Mismatches: 28, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
90 66 0.53
91 57 0.46
92 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (90 bp):
TTAATGAATTCATAACCCAGGGTTTCGGTGGTCCTAGTAAGACGGATTTGATGAATTCATGAATT
TATAAGATGAAACCACTAAATGCTC
Found at i:70003066 original size:29 final size:26
Alignment explanation
Indices: 70003006--70003067 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 26
70002996 AATTTTATAA
**
70003006 AAAAATTGTAAAAGTATTTAAATTTT
1 AAAAATTGTAAAAAAATTTAAATTTT
70003032 ATAAAATTGTAAAAAAAACTTTAAATTTT
1 A-AAAATTGT-AAAAAAA-TTTAAATTTT
70003061 CAAAAAT
1 -AAAAAT
70003068 ATATATTCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
26 1 0.03
27 8 0.27
28 5 0.17
29 15 0.50
30 1 0.03
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (26 bp):
AAAAATTGTAAAAAAATTTAAATTTT
Found at i:70006360 original size:36 final size:37
Alignment explanation
Indices: 70006313--70006385 Score: 121
Period size: 36 Copynumber: 2.0 Consensus size: 37
70006303 GCAAGAAAAA
70006313 CAATAGAATTGGCTGCCTGTTCC-GTTTTTTTTCTTT
1 CAATAGAATTGGCTGCCTGTTCCAGTTTTTTTTCTTT
* *
70006349 CAATAGAATTGGTTGCCTGTTCCATTTTTTTTTCTTT
1 CAATAGAATTGGCTGCCTGTTCCAGTTTTTTTTCTTT
70006386 TGTCCTTCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
36 22 0.65
37 12 0.35
ACGTcount: A:0.15, C:0.18, G:0.15, T:0.52
Consensus pattern (37 bp):
CAATAGAATTGGCTGCCTGTTCCAGTTTTTTTTCTTT
Found at i:70008397 original size:11 final size:12
Alignment explanation
Indices: 70008379--70008404 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
70008369 CTTGTGTTGA
70008379 GAAAAAAAAATT
1 GAAAAAAAAATT
70008391 GAAAAAAAAATT
1 GAAAAAAAAATT
70008403 GA
1 GA
70008405 TAAATATTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (12 bp):
GAAAAAAAAATT
Found at i:70012466 original size:12 final size:12
Alignment explanation
Indices: 70012449--70012482 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
70012439 CCAGCCGGCC
70012449 TATATTAATTTT
1 TATATTAATTTT
70012461 TATATT-ATTTT
1 TATATTAATTTT
70012472 TATA-TAATTTT
1 TATATTAATTTT
70012483 AAAATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 14 0.67
12 6 0.29
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATATTAATTTT
Found at i:70019713 original size:2 final size:2
Alignment explanation
Indices: 70019706--70019730 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
70019696 TTTAGTTATT
70019706 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
70019731 TATTTAAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70020982 original size:16 final size:16
Alignment explanation
Indices: 70020961--70020991 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70020951 GATATTTTAA
70020961 TATATTATATTAATAT
1 TATATTATATTAATAT
*
70020977 TATATTATGTTAATA
1 TATATTATATTAATA
70020992 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:70021088 original size:12 final size:12
Alignment explanation
Indices: 70021071--70021101 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
70021061 GAAGCAGGGG
70021071 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
70021083 AGAAAAAGGGAA
1 AGAAAAAGAGAA
70021095 AGAAAAA
1 AGAAAAA
70021102 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:70021861 original size:16 final size:16
Alignment explanation
Indices: 70021806--70021859 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
70021796 ATCAAATTGA
70021806 ATTGAATAAGTGAATT
1 ATTGAATAAGTGAATT
* *
70021822 ATGGAATAGGTG-ATT
1 ATTGAATAAGTGAATT
70021837 ATTTGAA-AAGTGAATT
1 A-TTGAATAAGTGAATT
70021853 GATTGAA
1 -ATTGAA
70021860 AATAAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
15 8 0.26
16 22 0.71
17 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (16 bp):
ATTGAATAAGTGAATT
Found at i:70046470 original size:23 final size:23
Alignment explanation
Indices: 70046443--70046487 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
70046433 CGCCACTCAT
70046443 ACTTAACAGAAATAGACAAAAAA
1 ACTTAACAGAAATAGACAAAAAA
70046466 ACTTAACAGAAATAGACAAAAA
1 ACTTAACAGAAATAGACAAAAA
70046488 CAAATCAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.64, C:0.13, G:0.09, T:0.13
Consensus pattern (23 bp):
ACTTAACAGAAATAGACAAAAAA
Found at i:70050058 original size:16 final size:17
Alignment explanation
Indices: 70050039--70050072 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
70050029 AATATTTATT
70050039 TTTTATATTT-ATAATA
1 TTTTATATTTAATAATA
*
70050055 TTTTATTTTTAATAATA
1 TTTTATATTTAATAATA
70050072 T
1 T
70050073 GGAATTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTATATTTAATAATA
Found at i:70056729 original size:9 final size:9
Alignment explanation
Indices: 70056700--70056758 Score: 54
Period size: 9 Copynumber: 6.8 Consensus size: 9
70056690 TTTAAATGAT
70056700 ATTTTTATA
1 ATTTTTATA
*
70056709 AATTTTAT-
1 ATTTTTATA
*
70056717 TTTTTTAT-
1 ATTTTTATA
70056725 A-TTTTAT-
1 ATTTTTATA
70056732 ATTTTTATA
1 ATTTTTATA
70056741 TAGTTTTTATA
1 -A-TTTTTATA
70056752 ATTTTTA
1 ATTTTTA
70056759 CATTATCGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
7 7 0.17
8 12 0.29
9 13 0.31
10 2 0.05
11 8 0.19
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (9 bp):
ATTTTTATA
Found at i:70056737 original size:15 final size:15
Alignment explanation
Indices: 70056698--70056741 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 15
70056688 GATTTAAATG
70056698 ATATTTTTATAAATTTT
1 ATATTTTTAT--ATTTT
*
70056715 ATTTTTTTATATTTT
1 ATATTTTTATATTTT
70056730 ATATTTTTATAT
1 ATATTTTTATAT
70056742 AGTTTTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 16 0.64
17 9 0.36
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATATTTTTATATTTT
Found at i:70056738 original size:8 final size:8
Alignment explanation
Indices: 70056698--70056741 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
70056688 GATTTAAATG
70056698 ATATTTTT
1 ATATTTTT
*
70056706 ATAAATTTT
1 AT-ATTTTT
*
70056715 ATTTTTTT
1 ATATTTTT
70056723 ATA-TTTT
1 ATATTTTT
70056730 ATATTTTT
1 ATATTTTT
70056738 ATAT
1 ATAT
70056742 AGTTTTTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
7 7 0.23
8 16 0.53
9 7 0.23
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (8 bp):
ATATTTTT
Found at i:70056742 original size:17 final size:17
Alignment explanation
Indices: 70056698--70056758 Score: 72
Period size: 16 Copynumber: 3.5 Consensus size: 17
70056688 GATTTAAATG
*
70056698 ATATTTTTATAAATTTT
1 ATATTTTTATATATTTT
70056715 AT-TTTTT-TATATTTT
1 ATATTTTTATATATTTT
70056730 ATATTTTTATATAGTTTTT
1 ATATTTTTATATA--TTTT
70056749 ATAATTTTTA
1 AT-ATTTTTA
70056759 CATTATCGGT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
15 9 0.24
16 10 0.26
17 6 0.16
19 6 0.16
20 7 0.18
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (17 bp):
ATATTTTTATATATTTT
Found at i:70058575 original size:26 final size:24
Alignment explanation
Indices: 70058530--70058577 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
70058520 TTATTTTAAC
*
70058530 AAAAAAAAACATAAATTTAAATGT
1 AAAAAAAAACATAAACTTAAATGT
*
70058554 AAAAAAAAATATGAAAACTTAAAT
1 AAAAAAAAACAT--AAACTTAAAT
70058578 AAAAGAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
26 9 0.45
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (24 bp):
AAAAAAAAACATAAACTTAAATGT
Found at i:70062628 original size:14 final size:14
Alignment explanation
Indices: 70062609--70062637 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
70062599 TTGTTTCTCA
70062609 CTGTCATATGCTAC
1 CTGTCATATGCTAC
70062623 CTGTCATATGCTAC
1 CTGTCATATGCTAC
70062637 C
1 C
70062638 AACATTCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.31, G:0.14, T:0.34
Consensus pattern (14 bp):
CTGTCATATGCTAC
Found at i:70065191 original size:7 final size:7
Alignment explanation
Indices: 70065179--70065205 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
70065169 AGAATGCAGC
70065179 ATTGCAA
1 ATTGCAA
70065186 ATTGCAA
1 ATTGCAA
70065193 ATTGCAA
1 ATTGCAA
70065200 ATTGCA
1 ATTGCA
70065206 GGCCCAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (7 bp):
ATTGCAA
Found at i:70079189 original size:27 final size:27
Alignment explanation
Indices: 70079151--70079206 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
70079141 CTACCTAAAG
70079151 TTAGCAAATTCCTAATATTCAGGTTCA
1 TTAGCAAATTCCTAATATTCAGGTTCA
70079178 TTAGCAAATTCCTAATATTCAGGTTCA
1 TTAGCAAATTCCTAATATTCAGGTTCA
70079205 TT
1 TT
70079207 TACATCAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (27 bp):
TTAGCAAATTCCTAATATTCAGGTTCA
Found at i:70085651 original size:11 final size:11
Alignment explanation
Indices: 70085630--70085660 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
70085620 TTTTAGTTAT
70085630 TTGATGATGAAA
1 TTGA-GATGAAA
70085642 TTGAGATGAAA
1 TTGAGATGAAA
70085653 TTGAGATG
1 TTGAGATG
70085661 TTAATGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.79
12 4 0.21
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (11 bp):
TTGAGATGAAA
Found at i:70085974 original size:13 final size:13
Alignment explanation
Indices: 70085956--70085980 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70085946 TAAGTACCCA
70085956 ACCCAACCCAATT
1 ACCCAACCCAATT
70085969 ACCCAACCCAAT
1 ACCCAACCCAAT
70085981 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:70086018 original size:5 final size:6
Alignment explanation
Indices: 70086005--70086064 Score: 66
Period size: 6 Copynumber: 9.5 Consensus size: 6
70085995 ATAATTTAAT
* *
70086005 AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATAA AAATTAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAA-TAA
*
70086056 AATTAA AAA
1 AAATAA AAA
70086065 CATATAATTT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
6 37 0.79
7 5 0.11
8 5 0.11
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:70086101 original size:9 final size:9
Alignment explanation
Indices: 70086083--70086159 Score: 84
Period size: 9 Copynumber: 8.6 Consensus size: 9
70086073 TTTATACAAA
70086083 TAATTCGGT
1 TAATTCGGT
*
70086092 TAATTTGGT
1 TAATTCGGT
*
70086101 TAATTCAGT
1 TAATTCGGT
* *
70086110 TAATTTGGG
1 TAATTCGGT
70086119 TAATTCAGG-
1 TAATTC-GGT
70086128 TAATTCGGT
1 TAATTCGGT
**
70086137 TAATTCAAT
1 TAATTCGGT
70086146 TAATTCGGT
1 TAATTCGGT
70086155 TAATT
1 TAATT
70086160 TTATACTTAT
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
8 2 0.04
9 51 0.93
10 2 0.04
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (9 bp):
TAATTCGGT
Found at i:70086106 original size:18 final size:18
Alignment explanation
Indices: 70086083--70086159 Score: 100
Period size: 18 Copynumber: 4.3 Consensus size: 18
70086073 TTTATACAAA
* *
70086083 TAATTCGGTTAATTTGGT
1 TAATTCAGTTAATTCGGT
* *
70086101 TAATTCAGTTAATTTGGG
1 TAATTCAGTTAATTCGGT
*
70086119 TAATTCAGGTAATTCGGT
1 TAATTCAGTTAATTCGGT
*
70086137 TAATTCAATTAATTCGGT
1 TAATTCAGTTAATTCGGT
70086155 TAATT
1 TAATT
70086160 TTATACTTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (18 bp):
TAATTCAGTTAATTCGGT
Found at i:70086656 original size:21 final size:21
Alignment explanation
Indices: 70086617--70086657 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
70086607 TGTAAATTGG
*
70086617 ATTAAATTGAGTATGAATTTC
1 ATTAAATTGAGTATAAATTTC
70086638 ATTAAATTGATGT-TAAATTT
1 ATTAAATTGA-GTATAAATTT
70086658 ACTCATAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.46
Consensus pattern (21 bp):
ATTAAATTGAGTATAAATTTC
Found at i:70087138 original size:33 final size:33
Alignment explanation
Indices: 70087096--70087183 Score: 176
Period size: 33 Copynumber: 2.7 Consensus size: 33
70087086 TTTCAATTAG
70087096 GATTTAGCCTGGACTGGTAATCCTAATTGACTA
1 GATTTAGCCTGGACTGGTAATCCTAATTGACTA
70087129 GATTTAGCCTGGACTGGTAATCCTAATTGACTA
1 GATTTAGCCTGGACTGGTAATCCTAATTGACTA
70087162 GATTTAGCCTGGACTGGTAATC
1 GATTTAGCCTGGACTGGTAATC
70087184 TGACAAAGCC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (33 bp):
GATTTAGCCTGGACTGGTAATCCTAATTGACTA
Found at i:70091113 original size:39 final size:39
Alignment explanation
Indices: 70091054--70091232 Score: 286
Period size: 39 Copynumber: 4.6 Consensus size: 39
70091044 GCTCTGATGA
70091054 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
70091093 GCTTTAGTTAGCCTTCGGGCTTCCATTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* **
70091132 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAATACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
70091171 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
70091210 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
70091233 AGATCACGAT
Statistics
Matches: 127, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 127 1.00
ACGTcount: A:0.12, C:0.25, G:0.24, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:70108770 original size:18 final size:18
Alignment explanation
Indices: 70108747--70108789 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
70108737 CGGAAGAAAC
*
70108747 ATAAAAAGTAATTTTGAA
1 ATAAAAAATAATTTTGAA
* *
70108765 ATAAAAAATACTTTTGAC
1 ATAAAAAATAATTTTGAA
70108783 ATAAAAA
1 ATAAAAA
70108790 TATTATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (18 bp):
ATAAAAAATAATTTTGAA
Found at i:70110428 original size:16 final size:16
Alignment explanation
Indices: 70110407--70110453 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
70110397 TGTCATTGAT
70110407 AATTTTTTTACTTTAA
1 AATTTTTTTACTTTAA
* *
70110423 AA--TTTTAAATTTAA
1 AATTTTTTTACTTTAA
*
70110437 ACTTTTTTTACTTTAA
1 AATTTTTTTACTTTAA
70110453 A
1 A
70110454 TTTAAAACTT
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
14 11 0.46
16 13 0.54
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.57
Consensus pattern (16 bp):
AATTTTTTTACTTTAA
Found at i:70112685 original size:23 final size:23
Alignment explanation
Indices: 70112659--70112702 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
70112649 TGAAAGAGCC
70112659 TTTCACCTTCTAATTTATTAGAG
1 TTTCACCTTCTAATTTATTAGAG
**
70112682 TTTCGTCTTCTAATTTATTAG
1 TTTCACCTTCTAATTTATTAG
70112703 GGTTCCGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.16, G:0.09, T:0.52
Consensus pattern (23 bp):
TTTCACCTTCTAATTTATTAGAG
Found at i:70124288 original size:22 final size:22
Alignment explanation
Indices: 70124257--70124307 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
70124247 AAAAATATAT
* *
70124257 AATT-AATAGAATTGATTTTAA
1 AATTAAATAGAATTAATTTCAA
70124278 AATTAAATAGAATTAATTTCAA
1 AATTAAATAGAATTAATTTCAA
70124300 AATTAAAT
1 AATTAAAT
70124308 TATTTCCGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (22 bp):
AATTAAATAGAATTAATTTCAA
Found at i:70124872 original size:13 final size:13
Alignment explanation
Indices: 70124847--70124887 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
70124837 CATTTAAAAA
70124847 TAAACTT-TTTTT
1 TAAACTTATTTTT
70124859 TAAACTTATTTTT
1 TAAACTTATTTTT
*
70124872 TAAATTTATATTTT
1 TAAACTTAT-TTTT
70124886 TA
1 TA
70124888 TCCAAATCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 7 0.27
13 13 0.50
14 6 0.23
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (13 bp):
TAAACTTATTTTT
Found at i:70125582 original size:71 final size:73
Alignment explanation
Indices: 70125441--70125582 Score: 182
Period size: 71 Copynumber: 2.0 Consensus size: 73
70125431 ACTTTTGGTT
* * * *
70125441 AAGAGTTGTCACTATTCATAGTGATAAGTTAGGTCTCTTGAATACCAAAAGTTGTGCCACTTAGT
1 AAGAGTTGTCACTATTCATAGTAATAAGTTAGATCTCTTGAATACCAAAAGTTATGCCACTTAAT
70125506 TATTAACC
66 TATTAACC
* * * *
70125514 AAGAGTTGTCAC-ATTTATAGTAATAAGTTATATCTCTTG-TTACCAAAA-TTCATGCCATTTAA
1 AAGAGTTGTCACTATTCATAGTAATAAGTTAGATCTCTTGAATACCAAAAGTT-ATGCCACTTAA
70125576 TTATTAA
65 TTATTAA
70125583 TTGTCGTAAC
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
70 2 0.03
71 23 0.38
72 23 0.38
73 12 0.20
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (73 bp):
AAGAGTTGTCACTATTCATAGTAATAAGTTAGATCTCTTGAATACCAAAAGTTATGCCACTTAAT
TATTAACC
Found at i:70126819 original size:18 final size:18
Alignment explanation
Indices: 70126789--70126872 Score: 68
Period size: 18 Copynumber: 4.7 Consensus size: 18
70126779 TGGAGAGGGC
70126789 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
70126807 ATATAAATAATAATATATA
1 ATATAAATAATAATA-ATA
* *
70126826 CAT-GAGA-AATAATAATA
1 -ATATAAATAATAATAATA
* *
70126843 ATATAAATAATAGTAAAA
1 ATATAAATAATAATAATA
*
70126861 ATA-AAAAAATAA
1 ATATAAATAATAA
70126873 AAAAAATAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
16 2 0.04
17 15 0.28
18 29 0.55
19 5 0.09
20 2 0.04
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:70126823 original size:30 final size:32
Alignment explanation
Indices: 70126789--70126854 Score: 82
Period size: 36 Copynumber: 2.0 Consensus size: 32
70126779 TGGAGAGGGC
70126789 ATATATA-AT-ATAATAATAATATAAATAATA
1 ATATATACATAATAATAATAATATAAATAATA
70126819 ATATATACATGAGAAATAATAATAATATAAATAATA
1 ATATATACAT----AATAATAATAATATAAATAATA
70126855 GTAAAAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
30 7 0.23
31 2 0.07
36 21 0.70
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (32 bp):
ATATATACATAATAATAATAATATAAATAATA
Found at i:70127331 original size:22 final size:22
Alignment explanation
Indices: 70127265--70127333 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
70127255 TTTGTAGGCA
* * *
70127265 AGTGGAGTGGTTGGGGTGGTTT
1 AGTGGAGTGATTAGAGTGGTTT
*
70127287 AGTGGAGTGGTTTAGTATAGTGGTTT
1 AGTGGAGT-GATTAG---AGTGGTTT
70127313 AGTGGAGTGATTAGAGTGGTT
1 AGTGGAGTGATTAGAGTGGTT
70127334 GGAGTGGTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
22 15 0.38
23 4 0.10
25 5 0.13
26 15 0.38
ACGTcount: A:0.17, C:0.00, G:0.45, T:0.38
Consensus pattern (22 bp):
AGTGGAGTGATTAGAGTGGTTT
Found at i:70127338 original size:9 final size:9
Alignment explanation
Indices: 70127315--70127373 Score: 55
Period size: 9 Copynumber: 6.1 Consensus size: 9
70127305 AGTGGTTTAG
*
70127315 TGGAGTGAT
1 TGGAGTGGT
*
70127324 TAGAGTGGT
1 TGGAGTGGT
70127333 TGGAGTGGTTT
1 TGGAGTGG--T
70127344 AGTGGAGTGGT
1 --TGGAGTGGT
*
70127355 TGGAGTGTT
1 TGGAGTGGT
70127364 TGGAGTGGT
1 TGGAGTGGT
70127373 T
1 T
70127374 TAGTGGAGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
9 31 0.76
11 2 0.05
13 8 0.20
ACGTcount: A:0.15, C:0.00, G:0.47, T:0.37
Consensus pattern (9 bp):
TGGAGTGGT
Found at i:70127338 original size:18 final size:18
Alignment explanation
Indices: 70127315--70127373 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 18
70127305 AGTGGTTTAG
*
70127315 TGGAGTGATTAGAGTGGT
1 TGGAGTGTTTAGAGTGGT
70127333 TGGAGTGGTTTAGTGGAGTGGT
1 TGGAGT-GTTTA---GAGTGGT
*
70127355 TGGAGTGTTTGGAGTGGT
1 TGGAGTGTTTAGAGTGGT
70127373 T
1 T
70127374 TAGTGGAGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
18 14 0.40
19 4 0.11
21 4 0.11
22 13 0.37
ACGTcount: A:0.15, C:0.00, G:0.47, T:0.37
Consensus pattern (18 bp):
TGGAGTGTTTAGAGTGGT
Found at i:70127343 original size:31 final size:31
Alignment explanation
Indices: 70127305--70127382 Score: 129
Period size: 31 Copynumber: 2.5 Consensus size: 31
70127295 GGTTTAGTAT
70127305 AGTGGTTTAGTGGAGTGATTAGAGTGGTTGG
1 AGTGGTTTAGTGGAGTGATTAGAGTGGTTGG
* * *
70127336 AGTGGTTTAGTGGAGTGGTTGGAGTGTTTGG
1 AGTGGTTTAGTGGAGTGATTAGAGTGGTTGG
70127367 AGTGGTTTAGTGGAGT
1 AGTGGTTTAGTGGAGT
70127383 AAAGATATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.17, C:0.00, G:0.46, T:0.37
Consensus pattern (31 bp):
AGTGGTTTAGTGGAGTGATTAGAGTGGTTGG
Found at i:70127382 original size:13 final size:13
Alignment explanation
Indices: 70127265--70127355 Score: 73
Period size: 13 Copynumber: 6.9 Consensus size: 13
70127255 TTTGTAGGCA
70127265 AGTGGAGTGG-TT
1 AGTGGAGTGGTTT
70127277 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
70127287 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
**
70127300 AGTATAGTGGTTT
1 AGTGGAGTGGTTT
*
70127313 AGTGGAGTGATTAGAGT
1 AGTGGAGTGGTT----T
*
70127330 GGTTGGAGTGGTTT
1 AG-TGGAGTGGTTT
70127344 AGTGGAGTGGTT
1 AGTGGAGTGGTT
70127356 GGAGTGTTTG
Statistics
Matches: 62, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
9 4 0.06
10 4 0.06
11 2 0.03
12 2 0.03
13 37 0.60
14 2 0.03
17 2 0.03
18 9 0.15
ACGTcount: A:0.16, C:0.00, G:0.46, T:0.37
Consensus pattern (13 bp):
AGTGGAGTGGTTT
Found at i:70127792 original size:88 final size:88
Alignment explanation
Indices: 70127637--70128751 Score: 699
Period size: 88 Copynumber: 12.7 Consensus size: 88
70127627 GTTCTTGATC
* * * *
70127637 TGCT-TCTTCGATCT-GTTCCCCATAAACACATGGATGCCAAATCTGCTATCTTCAA-CTTGTTC
1 TGCTATCTTCGATCTAGTTCCCTATAAGCACAGGGATGCCAGATCTGCTATCTTCAATC-TGTTC
* *
70127699 CCTATAAGTACAGGGATTCCATGT
65 CCTATAAGCACAGGGATGCCATGT
** * * * *
70127723 TGAAATCTTCGATCTACTTCACC-GTAAGCACAGGAATGTCAGATCTGCTATCTTCAATCTGTTC
1 TGCTATCTTCGATCTAGTTC-CCTATAAGCACAGGGATGCCAGATCTGCTATCTTCAATCTGTTC
*
70127787 TCTATAAGCAC-GTGGATGCCAAAT-T
65 CCTATAAGCACAG-GGATGCC--ATGT
* * * ** *
70127812 TGCTATTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCATGA--TGAAATCTTCGATCTGCTT
1 TGCTATCTTCGATCTAGTTCCCTATAAGCACAGGGATGCCA-GATCTGCTATCTTCAATCTG-TT
* * * *
70127874 CACTGTAAGCACAGGAATGTC-TGATT
64 CCCTATAAGCACAGGGATGCCATG--T
* * *
70127900 TGCTATCTTCGATCT-GTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAA-CTTGTTC
1 TGCTATCTTCGATCTAGTTCCCTATAAGCACAGGGATGCCAGATCTGCTATCTTCAATC-TGTTC
*
70127963 CCTATAAGCACAGGGATGCCATGC
65 CCTATAAGCACAGGGATGCCATGT
** * ** * * * *
70127987 TGAAATCTTCGATCTACTTAACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCTATCTGTTCC
1 TGCTATCTTCGATCTAGTTCCCTATAAGCACAGGGATGCCAGATCTGCTATCTTCAATCTGTTCC
**
70128052 CTATAAGCACAGGGATGCCAAAT
66 CTATAAGCACAGGGATGCCATGT
* * * ** *
70128075 CTGCTATCTTC-AACTTGTTCCCTTTAAGCACAGGGATGCC--ATGCTGAAATCTTCGATCTGCT
1 -TGCTATCTTCGATCTAGTTCCCTATAAGCACAGGGATGCCAGAT-CTGCTATCTTCAATCTG-T
* ** *
70128137 TCACC-GTAAGCACAGCAATGTCA-GAT
63 TC-CCTATAAGCACAGGGATGCCATG-T
* * * *
70128163 CTGCTATCCTCGATCT-GTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAA-CTTGTT
1 -TGCTATCTTCGATCTAGTTCCCTATAAGCACAGGGATGCCAGATCTGCTATCTTCAATC-TGTT
*
70128226 CCCTATAAGCACAGGGATGCCATGC
64 CCCTATAAGCACAGGGATGCCATGT
** * * * * * * *
70128251 TGAAATCTTCGATCTACTTCACTGTAAGCATAGGAATGTCAGATCTGCTATCTTCGATCTGTTCC
1 TGCTATCTTCGATCTAGTTCCCTATAAGCACAGGGATGCCAGATCTGCTATCTTCAATCTGTTCC
**
70128316 CTATAAGCACAGGGATGCCAAAT
66 CTATAAGCACAGGGATGCCATGT
* * * ** * * *
70128339 CTGCTATTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATTTTCGATCTACT
1 -TGCTATCTTCGATCTAGTTCCCTATAAGCACAGGGATGCCAGAT-CTGCTATCTTCAATCT-GT
* * * *
70128401 TCACTGTAAGCACAGGAATGTCA-GAT
63 TCCCTATAAGCACAGGGATGCCATG-T
* * * *
70128427 CTGCTATCTTCGATCT-GTTCCCTATAAGCACGGGGATGCCAAATCTGCTGTTTTCAA-CTTGTT
1 -TGCTATCTTCGATCTAGTTCCCTATAAGCACAGGGATGCCAGATCTGCTATCTTCAATC-TGTT
*
70128490 CCCTATAAGCACAGGGATGCCATGC
64 CCCTATAAGCACAGGGATGCCATGT
** * * * * * * * ** * * *
70128515 TGAAATTTTTGATCT-GCTTCACTGTAAGCATAGGAATGTCAGATCTATTATCTTCGATCTATTT
1 TGCTATCTTCGATCTAG-TTCCCTATAAGCACAGGGATGCCAGATCTGCTATCTTCAATCTGTTC
***
70128579 CCTATAAGCACAGGGATGCCAAACC
65 CCTATAAGCACAGGGATGCC-ATGT
* ** * * ** *
70128604 TGCTGT-TTTTAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGATCTGCTT
1 TGCTATCTTCGATCTAGTTCCCTATAAGCACAGGGATGCCAGAT-CTGCTATCTTCAATCTG-TT
* * * * *
70128666 CACTGTAAGCACAAGAATGTCA-GAT
64 CCCTATAAGCACAGGGATGCCATG-T
* * * * * *
70128691 CTACTATCTTTGATCT-GTTCCCTATAAACACAGGGATGCCAAATCTGCAATCTTCGATCTG
1 -TGCTATCTTCGATCTAGTTCCCTATAAGCACAGGGATGCCAGATCTGCTATCTTCAATCTG
70128752 CTCTCCGCCG
Statistics
Matches: 791, Mismatches: 184, Indels: 105
0.73 0.17 0.10
Matches are distributed among these distances:
85 1 0.00
86 8 0.01
87 107 0.14
88 563 0.71
89 104 0.13
90 8 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (88 bp):
TGCTATCTTCGATCTAGTTCCCTATAAGCACAGGGATGCCAGATCTGCTATCTTCAATCTGTTCC
CTATAAGCACAGGGATGCCATGT
Found at i:70127882 original size:132 final size:132
Alignment explanation
Indices: 70127633--70128738 Score: 1784
Period size: 132 Copynumber: 8.4 Consensus size: 132
70127623 TTGAGTTCTT
* * * *
70127633 GATCTGCT-TCTTCGATCTGTTCCCCATAAACACATGGATGCCAAATCTGCTATCTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGT
* * * *
70127697 TCCCTATAAGTACAGGGATTCCATGTTGAAATCTTCGATCTACTTCACCGTAAGCACAGGAATGT
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGT
70127762 CA
131 CA
* * *
70127764 GATCTGCTATCTTCAATCTGTTCTCTATAAGCAC-GTGGATGCCAAATTTGCTATTTTCAACTTG
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAG-GGATGCCAAATCTGCTATTTTCAACTTG
* *
70127828 TTCCCTATAAGCACAGGGATGCCATGATGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATG
65 TTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATG
*
70127893 TCT
130 TCA
* *
70127896 GATTTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGT
*
70127961 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTAACTGTAAGCACAGGAATGT
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGT
70128026 CA
131 CA
* *
70128028 GATCTGCTATCTTCTATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGT
* * * *
70128093 TCCCTTTAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACCGTAAGCACAGCAATGT
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGT
70128158 CA
131 CA
* *
70128160 GATCTGCTATCCTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGT
*
70128225 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCATAGGAATGT
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGT
70128290 CA
131 CA
70128292 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGT
*
70128357 TCCCTATAAGCACAGGGATGCCATGCTGAAATTTTCGATCTACTTCACTGTAAGCACAGGAATGT
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGT
70128422 CA
131 CA
* *
70128424 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACGGGGATGCCAAATCTGCTGTTTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGT
* * * *
70128489 TCCCTATAAGCACAGGGATGCCATGCTGAAATTTTTGATCTGCTTCACTGTAAGCATAGGAATGT
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGT
70128554 CA
131 CA
** * * * * *
70128556 GATCTATTATCTTCGATCTATTTCCTATAAGCACAGGGATGCCAAACCTGCTGTTTTTAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGT
* *
70128621 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGT
66 TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGT
70128686 CA
131 CA
* * *
70128688 GATCTACTATCTTTGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGC
1 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGC
70128739 AATCTTCGAT
Statistics
Matches: 906, Mismatches: 66, Indels: 5
0.93 0.07 0.01
Matches are distributed among these distances:
131 8 0.01
132 897 0.99
133 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGT
TCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGT
CA
Found at i:70129121 original size:205 final size:205
Alignment explanation
Indices: 70128763--70129251 Score: 771
Period size: 205 Copynumber: 2.4 Consensus size: 205
70128753 TCTCCGCCGC
* *
70128763 TACAGAGACGCCAAATTATCTTGGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
1 TACAGAGATGCCAAATTATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
* * *
70128828 TCTTCGATTTGTTCCTTGTAAGTACAAGGATGACAAACCATCTTGGATCTGCTTCAGTATAAACA
66 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGACAAACCATCTTGGATCTACTTCAGTATAAACA
* *
70128893 TTTGAAAGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGT
131 TCTGAAAGTTGGATCTACTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGT
*
70128958 TCTCTGACAA
196 TCTCTAACAA
* * * *
70128968 TACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCACGTGAAAGCCAAATCAGCTATT
1 TACAGAGATGCCAAATTATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
*
70129033 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACA
66 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGACAAACCATCTTGGATCTACTTCAGTATAAACA
* * * ** * *
70129098 TCTGAAGGTTGGATCTACTATGTGTCTGCCTTCTGTCGAAGTGGAGATGCTAGACTTCGATTTGT
131 TCTGAAAGTTGGATCTACTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGT
70129163 TCTCTAACAA
196 TCTCTAACAA
* *
70129173 TACAGAAATGCCAAATTATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCTAAATCAGCTATG
1 TACAGAGATGCCAAATTATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
*
70129238 TCTTCGATCTGCTC
66 TCTTCGATTTGCTC
70129252 TCCGCCTGAT
Statistics
Matches: 257, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
205 257 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (205 bp):
TACAGAGATGCCAAATTATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
TCTTCGATTTGCTCCTTGTAAGCACAAGGATGACAAACCATCTTGGATCTACTTCAGTATAAACA
TCTGAAAGTTGGATCTACTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGT
TCTCTAACAA
Found at i:70129513 original size:61 final size:63
Alignment explanation
Indices: 70129396--70129520 Score: 175
Period size: 61 Copynumber: 2.0 Consensus size: 63
70129386 TCATGTATCC
*
70129396 ATGCTTATGCCAAATAATTAGGATGCTTTGATTGAAATGAATCAAATGCTCTTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGC-TTGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
* * *
70129460 ATGCTTTATGTCAAATAATTAGGATG-TT-A-TGAAATGATTCAAATGCTCCTAACTAGATGTG
1 ATGC-TTATGCCAAATAATTAGGATGCTTGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
70129521 TTATTGTAGA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
61 29 0.52
62 1 0.02
63 2 0.04
64 4 0.07
65 20 0.36
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (63 bp):
ATGCTTATGCCAAATAATTAGGATGCTTGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:70130705 original size:3 final size:3
Alignment explanation
Indices: 70130677--70130736 Score: 57
Period size: 3 Copynumber: 19.3 Consensus size: 3
70130667 CTTGTCATTT
* * * *
70130677 TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA TGTA TTA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
*
70130723 TATA TTT TTA TTA T
1 T-TA TTA TTA TTA T
70130737 GTACGCGTAT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
3 39 0.87
4 6 0.13
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:70130733 original size:23 final size:22
Alignment explanation
Indices: 70130678--70130739 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
70130668 TTGTCATTTT
*
70130678 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
70130699 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
70130721 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
70130740 CGCGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:70130746 original size:23 final size:23
Alignment explanation
Indices: 70130702--70130747 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
70130692 GTATTACTAT
**
70130702 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
70130725 TATTTTTATTATGTACGCGTATA
1 TATTATTATTATGTACGAGTATA
70130748 CATATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:70130849 original size:3 final size:3
Alignment explanation
Indices: 70130836--70130868 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
70130826 TATTCCAATG
*
70130836 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
70130869 GTTTATGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:70131632 original size:38 final size:37
Alignment explanation
Indices: 70131548--70131642 Score: 97
Period size: 38 Copynumber: 2.5 Consensus size: 37
70131538 TATACGTACT
*
70131548 TATACATACTTAAATATATTTTTCATATTTCATAATTC
1 TATACATACTTAAATATATTTTGCATATTT-ATAATTC
* *
70131586 T-TATATACTTACATATATTTATGCATATTT-TACA-TC
1 TATACATACTTAAATATATTT-TGCATATTTATA-ATTC
*
70131622 ATATACATACTTATATATATT
1 -TATACATACTTAAATATATT
70131643 CTTTATATTC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
36 4 0.08
37 19 0.40
38 25 0.52
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.49
Consensus pattern (37 bp):
TATACATACTTAAATATATTTTGCATATTTATAATTC
Found at i:70131798 original size:28 final size:26
Alignment explanation
Indices: 70131749--70131824 Score: 64
Period size: 28 Copynumber: 2.8 Consensus size: 26
70131739 ACATATTTCA
* *
70131749 TTTTCATTTTC-ATAATACTTATCGATT
1 TTTTCATATTCTATAAT--TTATCGATG
* * *
70131776 TTTTTATATATGTATATATTTATCTATG
1 TTTTCATAT-TCTATA-ATTTATCGATG
70131804 TTTTCATATTCTATAATTTAT
1 TTTTCATATTCTATAATTTAT
70131825 ATGCATTTCT
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
26 6 0.15
27 12 0.31
28 16 0.41
29 3 0.08
30 2 0.05
ACGTcount: A:0.28, C:0.09, G:0.04, T:0.59
Consensus pattern (26 bp):
TTTTCATATTCTATAATTTATCGATG
Found at i:70143847 original size:130 final size:131
Alignment explanation
Indices: 70143550--70144271 Score: 1225
Period size: 130 Copynumber: 5.6 Consensus size: 131
70143540 GCGTAATAGG
70143550 TCCTATCTTCC--TATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
70143613 CGAAGTAGATCG-AGAAAGCAGATCTTGTC-TCATGTATTGGCGTG-AGTAGATCGAAGTAGCAG
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAGGTAGCAG
70143675 A
131 A
70143676 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
70143741 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC-AGGTAGCAG
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAGGTAGCAG
70143805 A
131 A
*
70143806 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
70143871 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGTAGCAG
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAGGTAGCAG
70143936 A
131 A
*
70143937 T-CTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
70144001 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG-AGGTAGCA
70144066 GA
130 GA
70144068 TCCTATCTTCCTATA-TGGTAGGAAGTGGATC-AAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
70144131 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG-AGGTAGCA
*
70144196 GG
130 GA
* * * *
70144198 T-CTATCTTCCTATATT-G-AAGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATACTAGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
70144260 TGAAGTAGATCG
66 CGAAGTAGATCG
70144272 AACGATACCT
Statistics
Matches: 575, Mismatches: 11, Indels: 17
0.95 0.02 0.03
Matches are distributed among these distances:
126 11 0.02
128 75 0.13
129 72 0.13
130 361 0.63
131 43 0.07
132 13 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (131 bp):
TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAGGTAGCAG
A
Found at i:70152674 original size:44 final size:45
Alignment explanation
Indices: 70152549--70153377 Score: 701
Period size: 44 Copynumber: 18.8 Consensus size: 45
70152539 ATAGGTCCTA
* * *
70152549 TCTTCCTATATTGGTAG-GAAGTGGATCAAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * *
70152592 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
70152637 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * *
70152681 TCTTCCTATATTGGTAG-GAAGTGGATCAAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * *
70152724 TCTTCCCATATTGGTGGCGAAGTAGATC-AAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
70152768 TCTTCATGTATTGG-CGTGAAGTAGATCGAAG-TAGCAGATCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* *
70152811 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * *
70152854 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
70152899 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* **
70152943 TCTTCCTATATTGGTAG-GAAGGGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
70152986 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGTAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
70153031 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
70153075 TCTTCCTATATTGATAG-GAAGTGGATCCAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
70153118 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGGTCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
70153163 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* ** * *
70153207 TCTTCCTATATTGAT-AAGAAGTGGATCCAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * * *
70153250 TCTTCCCATACTAGTGGTGAAGTAGATCGAAAAAAAAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCG----AAGATAGCAGATCTTG
* * ** *
70153299 TATTCATATATTGGT-TTGAAGTAGATCGAAGATTGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
70153343 CCTTCCTGTATTTGG-CAGCGAAGCAGATCAAAGAT
1 TCTTCCTATA-TTGGTC-GCGAAGTAGATCGAAGAT
70153378 GGCGGATTTT
Statistics
Matches: 618, Mismatches: 142, Indels: 49
0.76 0.18 0.06
Matches are distributed among these distances:
43 172 0.28
44 308 0.50
45 89 0.14
46 14 0.02
48 15 0.02
49 20 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (45 bp):
TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
Found at i:70152977 original size:132 final size:132
Alignment explanation
Indices: 70152544--70153339 Score: 1317
Period size: 132 Copynumber: 6.0 Consensus size: 132
70152534 CGTAAATAGG
70152544 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
70152609 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
70152674 GA
131 GA
70152676 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
70152741 CGAAGTAGATC-AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG-TAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
70152804 GA
131 GA
*
70152806 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
70152871 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
70152936 GA
131 GA
* *
70152938 TCCTATCTTCCTATATTGGTAGGAAGGGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* *
70153003 CGAAGTAGATCGCAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
*
70153068 GG
131 GA
* *
70153070 TCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* *
70153135 CGAAGTAGATCGCAGAAAGCAGGTCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
*
70153200 GG
131 GA
* * * * *
70153202 TCCTATCTTCCTATATTGATAAGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATACTAGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* * * * **
70153267 TGAAGTAGATCGAAAAAAAAAAGCAGATCTTGTATTCATATATTGGTTTGAAGTAGATCGAAGAT
66 CGAAGTAGATCG----AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
*
70153332 TGCAGA
127 AGCAGA
70153338 TC
1 TC
70153340 TTGCCTTCCT
Statistics
Matches: 634, Mismatches: 24, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
130 82 0.13
131 94 0.15
132 410 0.65
136 48 0.08
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
GA
Found at i:70153009 original size:262 final size:264
Alignment explanation
Indices: 70152544--70153339 Score: 1317
Period size: 262 Copynumber: 3.0 Consensus size: 264
70152534 CGTAAATAGG
70152544 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
70152609 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
70152674 GATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGT
131 GATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGT
70152739 GGCGAAGTAGATC-AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG-TAG
196 GGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
70152802 CAGA
261 CAGA
*
70152806 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
70152871 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
* *
70152936 GATCCTATCTTCCTATATTGGTAGGAAGGGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGT
131 GATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGT
** *
70153001 GGCGAAGTAGATCGCAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
196 GGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
*
70153066 CAGG
261 CAGA
* *
70153070 TCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* * *
70153135 CGAAGTAGATCGCAGAAAGCAGGTCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
* * * * * *
70153200 GGTCCTATCTTCCTATATTGATAAGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATACTAGT
131 GATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGT
* * * * **
70153265 GGTGAAGTAGATCGAAAAAAAAAAGCAGATCTTGTATTCATATATTGGTTTGAAGTAGATCGAAG
196 GGCGAAGTAGATC----AAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
*
70153330 ATTGCAGA
257 ATAGCAGA
70153338 TC
1 TC
70153340 TTGCCTTCCT
Statistics
Matches: 499, Mismatches: 29, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
262 205 0.41
263 45 0.09
264 201 0.40
268 48 0.10
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (264 bp):
TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
GATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGT
GGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
CAGA
Found at i:70153494 original size:46 final size:46
Alignment explanation
Indices: 70153435--70153896 Score: 189
Period size: 46 Copynumber: 10.3 Consensus size: 46
70153425 ATTCTATCTC
*
70153435 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
* * ** * *
70153481 CCTGTATTTGGCAG-CGAAGCAGATCAAAGA-TGTCAGATTTTACCTC
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATTG-CAGATCTTACCTT
*** * * ** * * *
70153527 CCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTATC-T
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TACCTT
*
70153568 CTCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
1 C-CTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
* * ** * *
70153615 CCTGTATTTGGCAG-CGAAGCAGATCAAAGA-TGTCAGATTTTACCTC
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATTG-CAGATCTTACCTT
* * * * ** * * *
70153661 CCTG-A-CT-ACAGTGGAGTACATTGAAG-CCG-ATAAT-TCTATCTC
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCA-GATCT-TACCTT
*
70153703 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
* * ** * *
70153749 CCTGTATTTGGCAG-CGAAGCAGATCAAAGA-TGTCAGATTTTACCTC
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATTG-CAGATCTTACCTT
*** * * ** * * *
70153795 CCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTATC-T
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TACCTT
*
70153836 CTCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
1 C-CTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
70153883 CCTGTATTTGGCAG
1 CCTGTATTTGGCAG
70153897 CAAAGCAGGT
Statistics
Matches: 286, Mismatches: 94, Indels: 72
0.63 0.21 0.16
Matches are distributed among these distances:
41 10 0.03
42 23 0.08
43 33 0.12
44 8 0.03
45 66 0.23
46 132 0.46
47 14 0.05
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (46 bp):
CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
Found at i:70153565 original size:134 final size:134
Alignment explanation
Indices: 70153320--70153974 Score: 1121
Period size: 134 Copynumber: 4.9 Consensus size: 134
70153310 TGGTTTGAAG
* * *
70153320 TAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCGGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGTCAGAT
*
70153385 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGTCGATAATTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGT
70153450 GGAA
131 GGAA
70153454 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGTCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGTCAGAT
* * *
70153519 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCTCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGT
70153584 GGAA
131 GGAA
70153588 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGTCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGTCAGAT
70153653 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGT
70153718 GGAA
131 GGAA
70153722 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGTCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGTCAGAT
* * *
70153787 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCTCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGT
70153852 GGAA
131 GGAA
* * ** * * *
70153856 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGGTTGAAGACGGCGGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGTCAGAT
* * * *
70153921 TTTACCCCCCTGATTACAGTGGAGTATATTGAAGCCGGTAATTCTATCTCCCTG
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTG
70153975 GGCAACAGTG
Statistics
Matches: 494, Mismatches: 27, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
134 494 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (134 bp):
TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGTCAGAT
TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGT
GGAA
Found at i:70155445 original size:3 final size:3
Alignment explanation
Indices: 70155417--70155476 Score: 57
Period size: 3 Copynumber: 19.3 Consensus size: 3
70155407 CTTGTCATTT
* * * *
70155417 TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA TGTA TTA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
*
70155463 TATA TTT TTA TTA T
1 T-TA TTA TTA TTA T
70155477 GTACGCGTAT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
3 39 0.87
4 6 0.13
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:70155473 original size:23 final size:22
Alignment explanation
Indices: 70155418--70155479 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
70155408 TTGTCATTTT
*
70155418 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
70155439 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
70155461 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
70155480 CGCGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:70155486 original size:23 final size:23
Alignment explanation
Indices: 70155442--70155487 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
70155432 GTATTACTAT
**
70155442 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
70155465 TATTTTTATTATGTACGCGTATA
1 TATTATTATTATGTACGAGTATA
70155488 CATATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:70155950 original size:28 final size:29
Alignment explanation
Indices: 70155902--70155964 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
70155892 TTTACACTAT
* *
70155902 TATATACATTTTTTCTAATAT-TATATTG
1 TATATACATTGTTTATAATATATATATTG
70155930 TATATACTATTGTTTATATATATATATATGTG
1 TATATAC-ATTGTTTATA-ATATATATAT-TG
70155962 TAT
1 TAT
70155965 GTATTTATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 7 0.24
29 8 0.28
30 4 0.14
31 5 0.17
32 5 0.17
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (29 bp):
TATATACATTGTTTATAATATATATATTG
Found at i:70156373 original size:38 final size:37
Alignment explanation
Indices: 70156289--70156383 Score: 97
Period size: 38 Copynumber: 2.5 Consensus size: 37
70156279 TATACGTACT
*
70156289 TATACATACTTAAATATATTTTTCATATTTCATAATTC
1 TATACATACTTAAATATATTTTGCATATTT-ATAATTC
* *
70156327 T-TATATACTTACATATATTTATGCATATTT-TACA-TC
1 TATACATACTTAAATATATTT-TGCATATTTATA-ATTC
*
70156363 ATATACATACTTATATATATT
1 -TATACATACTTAAATATATT
70156384 CTTTATATTC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
36 4 0.08
37 19 0.40
38 25 0.52
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.49
Consensus pattern (37 bp):
TATACATACTTAAATATATTTTGCATATTTATAATTC
Found at i:70161639 original size:20 final size:20
Alignment explanation
Indices: 70161614--70161654 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
70161604 AGCCAGCTTG
70161614 CATCTGCGCTTGTAATTGTT
1 CATCTGCGCTTGTAATTGTT
70161634 CATCTGCGCTTGTAATTGTT
1 CATCTGCGCTTGTAATTGTT
70161654 C
1 C
70161655 TTGCATCTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.22, G:0.20, T:0.44
Consensus pattern (20 bp):
CATCTGCGCTTGTAATTGTT
Found at i:70161836 original size:19 final size:20
Alignment explanation
Indices: 70161812--70161858 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
70161802 AGTGAAAGTT
70161812 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
70161831 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
70161851 -AATGCAAA
1 TAATGCAAA
70161859 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:70164435 original size:16 final size:16
Alignment explanation
Indices: 70164399--70164442 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
70164389 AATTAAAGTA
* *
70164399 ATAAAAAAATACTATAT
1 ATAAAAATATA-TATAC
*
70164416 ATAAATATATATATAC
1 ATAAAAATATATATAC
70164432 ATAAAAATATA
1 ATAAAAATATA
70164443 ACTAATATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAAAATATATATAC
Found at i:70164495 original size:116 final size:114
Alignment explanation
Indices: 70164255--70164460 Score: 271
Period size: 116 Copynumber: 1.8 Consensus size: 114
70164245 GGTTGGATAT
* * * *
70164255 AATGATAATAATAATATTAAAGTAAAGTAAATAATAATACTATATATAAATATATATATGTATAT
1 AATGATAATAAAAATATTAAAGTAAAGTAAAAAAAAATACTATATATAAATATATATA-GTACAT
* *
70164320 AATAGAAATACACACTACTATATAATAATAAATATAGAAATACAAAAAGCA
65 AATAGAAATACACACTAATATATAATAATAAATATAGAAAAACAAAAA-CA
*
70164371 AAT-ATAATAAAAATATTAAATTAAAGTAATAAAAAAATACTATATATAAATATATATA-TACAT
1 AATGATAATAAAAATATTAAAGTAAAGTAA-AAAAAAATACTATATATAAATATATATAGTACAT
*
70164434 -A-A-AAATATA-ACTAATATATAATAATAA
65 AATAGAAATACACACTAATATATAATAATAA
70164461 TAGTAATAGC
Statistics
Matches: 82, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
110 17 0.21
111 6 0.07
112 1 0.01
113 1 0.01
114 4 0.05
115 24 0.29
116 29 0.35
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (114 bp):
AATGATAATAAAAATATTAAAGTAAAGTAAAAAAAAATACTATATATAAATATATATAGTACATA
ATAGAAATACACACTAATATATAATAATAAATATAGAAAAACAAAAACA
Found at i:70164685 original size:3 final size:3
Alignment explanation
Indices: 70164672--70164750 Score: 60
Period size: 3 Copynumber: 26.3 Consensus size: 3
70164662 GAGGGCATAT
70164672 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
70164716 ATA ATA AT- ATA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
70164751 AAAAAAATAA
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
2 9 0.15
3 44 0.71
4 7 0.11
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:70164759 original size:44 final size:47
Alignment explanation
Indices: 70164672--70164760 Score: 112
Period size: 47 Copynumber: 2.0 Consensus size: 47
70164662 GAGGGCATAT
* ** *
70164672 ATAATATAATAATAATATAAATAATAATATATACATGAGAAATAATA
1 ATAATATAATAATAATAAAAATAATAATATATACAAAAAAAATAATA
*
70164719 ATAATATAATAATAGTAAAAATAATAA-A-ATA-AAAAAAAATAA
1 ATAATATAATAATAATAAAAATAATAATATATACAAAAAAAATAA
70164761 AACAAAGCTC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
44 8 0.22
45 3 0.08
46 1 0.03
47 25 0.68
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (47 bp):
ATAATATAATAATAATAAAAATAATAATATATACAAAAAAAATAATA
Found at i:70165237 original size:31 final size:31
Alignment explanation
Indices: 70165161--70165238 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
70165151 GGTTTAGTAT
*
70165161 AGTGGTTTAGTGGAATGGTTAGAGTGGTTGG
1 AGTGGTTTAGTGGAGTGGTTAGAGTGGTTGG
* * *
70165192 AGTGATTTAGTGGAGTGGTTGGAGTGTTTGG
1 AGTGGTTTAGTGGAGTGGTTAGAGTGGTTGG
70165223 AGTGGTTTAGTGGAGT
1 AGTGGTTTAGTGGAGT
70165239 AAAGATATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.37
Consensus pattern (31 bp):
AGTGGTTTAGTGGAGTGGTTAGAGTGGTTGG
Found at i:70171974 original size:16 final size:15
Alignment explanation
Indices: 70171936--70171974 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
70171926 ATTTATCAAT
*
70171936 TAAATAATTATATTA
1 TAAATAATTATATAA
70171951 TAAGATAATTATATAA
1 TAA-ATAATTATATAA
70171967 GTAAATAA
1 -TAAATAA
70171975 ATTAATTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 15 0.71
17 3 0.14
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (15 bp):
TAAATAATTATATAA
Found at i:70173423 original size:18 final size:18
Alignment explanation
Indices: 70173371--70173423 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
70173361 TGTTGCTATG
*
70173371 GAATAATTGACTGTTACT
1 GAATAATTGACTGTTATT
*
70173389 GAATAAATGACTGTTATT
1 GAATAATTGACTGTTATT
*
70173407 GTATAATTGACTGTTAT
1 GAATAATTGACTGTTAT
70173424 AGAGTAACTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.42
Consensus pattern (18 bp):
GAATAATTGACTGTTATT
Found at i:70180326 original size:23 final size:21
Alignment explanation
Indices: 70180282--70180326 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
70180272 TACGCGTGTG
*
70180282 TTTTTATATATTATCTTCTAA
1 TTTTTATATATTATATTCTAA
*
70180303 TTTTTATATAATTTATATTTTAA
1 TTTTTATAT-A-TTATATTCTAA
70180326 T
1 T
70180327 GCCGATTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 1 0.05
23 10 0.50
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTTTATATATTATATTCTAA
Found at i:70180633 original size:19 final size:20
Alignment explanation
Indices: 70180609--70180651 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
70180599 TAAATTATGA
70180609 AATTTTT-ATAAA-TATTTTG
1 AATTTTTGA-AAATTATTTTG
70180628 AATTTTTGAAAATTATTTTG
1 AATTTTTGAAAATTATTTTG
70180648 AATT
1 AATT
70180652 ATTTTGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (20 bp):
AATTTTTGAAAATTATTTTG
Found at i:70180634 original size:20 final size:20
Alignment explanation
Indices: 70180606--70180656 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
70180596 AAATAAATTA
*
70180606 TGAAATTTTTATAAA-TATTT
1 TGAATTTTTTA-AAATTATTT
*
70180626 TGAATTTTTGAAAATTATTT
1 TGAATTTTTTAAAATTATTT
70180646 TGAATTATTTT
1 TGAATT-TTTT
70180657 GTATTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 3 0.12
20 20 0.77
21 3 0.12
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (20 bp):
TGAATTTTTTAAAATTATTT
Found at i:70182590 original size:32 final size:31
Alignment explanation
Indices: 70182524--70182590 Score: 75
Period size: 32 Copynumber: 2.1 Consensus size: 31
70182514 TTTATTTTTT
* *
70182524 AATTTTATAATATTTTATATATAATACTTTA
1 AATTTTATAATATTTTATATATAATAATTAA
70182555 AATTTTATAAGATATTTT-TATATACA-AATTAA
1 AATTTTAT-A-ATATTTTATATATA-ATAATTAA
70182587 AATT
1 AATT
70182591 AATTGTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
31 8 0.26
32 15 0.48
33 8 0.26
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (31 bp):
AATTTTATAATATTTTATATATAATAATTAA
Found at i:70190683 original size:26 final size:26
Alignment explanation
Indices: 70190653--70190718 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 26
70190643 ATGAGTGAAT
70190653 TTAATTTTATCTTTTATTAAAAATAA
1 TTAATTTTATCTTTTATTAAAAATAA
* *
70190679 TTAATTTT-T-ATAT-TTAAAAATAA
1 TTAATTTTATCTTTTATTAAAAATAA
*
70190702 TATAAATTTATCTTTTA
1 T-TAATTTTATCTTTTA
70190719 ATTTTAGATC
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
23 11 0.35
24 8 0.26
25 2 0.06
26 10 0.32
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (26 bp):
TTAATTTTATCTTTTATTAAAAATAA
Found at i:70192128 original size:46 final size:44
Alignment explanation
Indices: 70192024--70192131 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
70192014 TGTCTTTGAC
** * * *
70192024 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
70192068 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
70192114 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
70192132 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:70199465 original size:44 final size:45
Alignment explanation
Indices: 70199417--70199505 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
70199407 CATGAATTAT
*
70199417 TCCTGTCTCCAATGCCATA-TATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCATATTATAATATGGACTTACATGGCTCAA
*
70199461 TCCTGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TCCTGTCTCCAAAGCCATA-TTATAATATGGACTTACATGGCTCA
70199506 TTTCTGTTCT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 18 0.44
46 23 0.56
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (45 bp):
TCCTGTCTCCAAAGCCATATTATAATATGGACTTACATGGCTCAA
Found at i:70209980 original size:19 final size:19
Alignment explanation
Indices: 70209958--70209996 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
70209948 AAATTACAAA
70209958 AAAAATT-CAAAATATTTAT
1 AAAAATTCCAAAA-ATTTAT
*
70209977 AAAATTTCCAAAAATTTAT
1 AAAAATTCCAAAAATTTAT
70209996 A
1 A
70209997 TAATCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATTCCAAAAATTTAT
Found at i:70213406 original size:21 final size:21
Alignment explanation
Indices: 70213380--70213420 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
70213370 ATCTGCTCAA
* *
70213380 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
70213401 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
70213421 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:70217101 original size:14 final size:14
Alignment explanation
Indices: 70217079--70217130 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
70217069 TTCAACAATT
*
70217079 AAATTTAAATTTTA
1 AAATATAAATTTTA
70217093 AAATATAAAATTTTA
1 AAATAT-AAATTTTA
* *
70217108 AAAAATAAGTTTATA
1 AAATATAAATTT-TA
70217123 AAA-ATAAA
1 AAATATAAA
70217131 AAATTAAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
14 14 0.44
15 18 0.56
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (14 bp):
AAATATAAATTTTA
Found at i:70217105 original size:15 final size:15
Alignment explanation
Indices: 70217085--70217115 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
70217075 AATTAAATTT
*
70217085 AAATTTTAAAATATA
1 AAATTTTAAAAAATA
70217100 AAATTTTAAAAAATA
1 AAATTTTAAAAAATA
70217115 A
1 A
70217116 GTTTATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AAATTTTAAAAAATA
Found at i:70222362 original size:34 final size:34
Alignment explanation
Indices: 70222320--70222385 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 34
70222310 TCTGACAAAC
*
70222320 ACAGTGAAAAAAAT-ATAAAATACTAGGTCGAAA
1 ACAGTGAAAAAAATAATAAAATAATAGGTCGAAA
*
70222353 ACAGTTGAAAAAAATAATAAAATAATGGGTCGA
1 ACAG-TGAAAAAAATAATAAAATAATAGGTCGA
70222386 GGGCATCTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 4 0.14
34 10 0.34
35 15 0.52
ACGTcount: A:0.56, C:0.08, G:0.17, T:0.20
Consensus pattern (34 bp):
ACAGTGAAAAAAATAATAAAATAATAGGTCGAAA
Found at i:70223476 original size:154 final size:154
Alignment explanation
Indices: 70223199--70224456 Score: 2074
Period size: 154 Copynumber: 8.2 Consensus size: 154
70223189 AAAATAATAT
* * * *
70223199 AAAAATAAAATACGAAAAT--AA-AAA-AATAAAAACAAATGGCCAAAACCAGAGTTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
*
70223260 AATTAATATTAAAAAAACACTAAAGTAATACATTTGAAACATTATGTACTAAAATAATATAAAAA
66 AATTAATA-TAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAA
*
70223325 TAAAATAGGAAAATAGTATATTTTA
130 TAAAATACGAAAATAGTATATTTTA
*
70223350 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCTAAAATCAGAGTTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
* *
70223415 AATTAATATAAAAAAACACTAAAATAATACATTTAAAACATTACGTACTAAAATAATATAAAAAT
66 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
70223480 AAAATACGAAAATAGTATATTTTA
131 AAAATACGAAAATAGTATATTTTA
*
70223504 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAATGGCCAAAATCAGAGTTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
70223569 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
66 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
70223634 AAAATACGAAAATAGTATATTTTA
131 AAAATACGAAAATAGTATATTTTA
*
70223658 AAAAATAAAATTCAAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
* * * *
70223723 AATTAATATAAAAAAACACTAATATAATACATTCGAACCATTATGTACTAAAATAATGTAAAAAA
66 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAA--TATAAAA
70223788 ATAAAATACGAAAATAGTATATTTTA
129 ATAAAATACGAAAATAGTATATTTTA
* *
70223814 AAAAATAAAATCCGAAAATAAAATAAATAATAAAAATAAAAGGCCAAAATCAGAGTTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
70223879 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
66 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
70223944 AAAATACGAAAATAGTATATTTTA
131 AAAATACGAAAATAGTATATTTTA
*
70223968 AAAAATAAAATTCAAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
* * * *
70224033 AATTAATAT-AAAAAACACTAATATAATACATTCGAACCATTATGTACTAAAATAATGTAAAAAA
66 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAA--TATAAAA
70224097 ATAAAATACGAAAATAGTATATTTTA
129 ATAAAATACGAAAATAGTATATTTTA
*
70224123 AAAAATAAAA-TCTGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATTAGAGTTTTTTACT
1 AAAAATAAAATTC-GAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACT
70224187 AAATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAA
65 AAATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAA
70224252 TAAAATACGAAAATAGTATATTTTAA
130 TAAAATACGAAAATAGTATATTTT-A
* **
70224278 AAAAATAAAATTCAAAAATAAAATAAATAAT-AAAA-AAATTGCCAAAATCAGAGTTTTTTACTA
1 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
* * *
70224341 AATTAATAT--AAAAA-ACTAAATTAATACATTCGAACCATTATGTACTAAAATAATATAAAAAA
66 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT--AAAA
70224403 ATAAAATACGAAAATAGTATA-TTTA
129 ATAAAATACGAAAATAGTATATTTTA
70224428 AAAAATAAAA-TCTGAAAATAAAATAAATA
1 AAAAATAAAATTC-GAAAATAAAATAAATA
70224457 CCAAAATATA
Statistics
Matches: 1045, Mismatches: 47, Indels: 31
0.93 0.04 0.03
Matches are distributed among these distances:
149 2 0.00
150 65 0.06
151 26 0.02
152 25 0.02
153 79 0.08
154 486 0.47
155 170 0.16
156 192 0.18
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.28
Consensus pattern (154 bp):
AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATCAGAGTTTTTTACTA
AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
AAAATACGAAAATAGTATATTTTA
Found at i:70223947 original size:310 final size:309
Alignment explanation
Indices: 70223199--70224456 Score: 2189
Period size: 310 Copynumber: 4.1 Consensus size: 309
70223189 AAAATAATAT
* * *
70223199 AAAAATAAAATACGAAAAT--AA-AAA-AATAAAAACAAATGGCCAAAACCAGAGTTTTTTACTA
1 AAAAATAAAATCCGAAAATAAAATAAATAATAAAAATAAATGGCCAAAATCAGAGTTTTTTACTA
*
70223260 AATTAATATTAAAAAAACACTAAAGTAATACATTTGAAACATTATGTACTAAAATAATATAAAAA
66 AATTAATA-TAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAA
* *
70223325 TAAAATAGGAAAATAGTATATTTTAAAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAA
130 TAAAATACGAAAATAGTATATTTTAAAAAATAAAATTCAAAAATAAAATAAATAATAAAAATAAA
* * ** *
70223390 CGGCTAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACACTAAAATAATACATTTAAAACA
195 CGGCCAAAATCAGAGTTTTTTACTAAATTAATAT-AAAAAACACTAATATAATACATTCGAACCA
* *
70223455 TTACGTACTAAAATAA--TATAAAAATAAAATACGAAAATAGTATATTTTA
259 TTATGTACTAAAATAATGTAAAAAAATAAAATACGAAAATAGTATATTTTA
*
70223504 AAAAATAAAATTCGAAAATAAAATAAATAATAAAAATAAATGGCCAAAATCAGAGTTTTTTACTA
1 AAAAATAAAATCCGAAAATAAAATAAATAATAAAAATAAATGGCCAAAATCAGAGTTTTTTACTA
70223569 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
66 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
70223634 AAAATACGAAAATAGTATATTTTAAAAAATAAAATTCAAAAATAAAATAAATAATAAAAATAAAC
131 AAAATACGAAAATAGTATATTTTAAAAAATAAAATTCAAAAATAAAATAAATAATAAAAATAAAC
70223699 GGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACACTAATATAATACATTCGAACCAT
196 GGCCAAAATCAGAGTTTTTTACTAAATTAATAT-AAAAAACACTAATATAATACATTCGAACCAT
70223764 TATGTACTAAAATAATGTAAAAAAATAAAATACGAAAATAGTATATTTTA
260 TATGTACTAAAATAATGTAAAAAAATAAAATACGAAAATAGTATATTTTA
*
70223814 AAAAATAAAATCCGAAAATAAAATAAATAATAAAAATAAAAGGCCAAAATCAGAGTTTTTTACTA
1 AAAAATAAAATCCGAAAATAAAATAAATAATAAAAATAAATGGCCAAAATCAGAGTTTTTTACTA
70223879 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
66 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
70223944 AAAATACGAAAATAGTATATTTTAAAAAATAAAATTCAAAAATAAAATAAATAATAAAAATAAAC
131 AAAATACGAAAATAGTATATTTTAAAAAATAAAATTCAAAAATAAAATAAATAATAAAAATAAAC
70224009 GGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAACACTAATATAATACATTCGAACCATT
196 GGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAACACTAATATAATACATTCGAACCATT
70224074 ATGTACTAAAATAATGTAAAAAAATAAAATACGAAAATAGTATATTTTA
261 ATGTACTAAAATAATGTAAAAAAATAAAATACGAAAATAGTATATTTTA
* * *
70224123 AAAAATAAAATCTGAAAATAAAATAAATAATAAAAATAAACGGCCAAAATTAGAGTTTTTTACTA
1 AAAAATAAAATCCGAAAATAAAATAAATAATAAAAATAAATGGCCAAAATCAGAGTTTTTTACTA
70224188 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
66 AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
70224253 AAAATACGAAAATAGTATATTTTAAAAAAATAAAATTCAAAAATAAAATAAATAAT-AAAA-AAA
131 AAAATACGAAAATAGTATATTTT-AAAAAATAAAATTCAAAAATAAAATAAATAATAAAAATAAA
**
70224316 TTGCCAAAATCAGAGTTTTTTACTAAATTAATAT-AAAAA-ACTAA-ATTAATACATTCGAACCA
195 CGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAACACTAATA-TAATACATTCGAACCA
*
70224378 TTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTATA-TTTA
259 TTATGTACTAAAATAATGTAAAAAAATAAAATACGAAAATAGTATATTTTA
*
70224428 AAAAATAAAATCTGAAAATAAAATAAATA
1 AAAAATAAAATCCGAAAATAAAATAAATA
70224457 CCAAAATATA
Statistics
Matches: 924, Mismatches: 21, Indels: 16
0.96 0.02 0.02
Matches are distributed among these distances:
305 52 0.06
306 66 0.07
307 7 0.01
308 231 0.25
309 278 0.30
310 290 0.31
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.28
Consensus pattern (309 bp):
AAAAATAAAATCCGAAAATAAAATAAATAATAAAAATAAATGGCCAAAATCAGAGTTTTTTACTA
AATTAATATAAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAT
AAAATACGAAAATAGTATATTTTAAAAAATAAAATTCAAAAATAAAATAAATAATAAAAATAAAC
GGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAACACTAATATAATACATTCGAACCATT
ATGTACTAAAATAATGTAAAAAAATAAAATACGAAAATAGTATATTTTA
Found at i:70224313 original size:31 final size:31
Alignment explanation
Indices: 70224236--70224313 Score: 72
Period size: 31 Copynumber: 2.6 Consensus size: 31
70224226 CATTATGTAC
*
70224236 TAAAAT-AAT-ATAAAAATAAAATACGAAAA
1 TAAAATAAATAATAAAAATAAAATACAAAAA
** ** *
70224265 TAGTATATTTTAA-AAAAATAAAATTCAAAAA
1 TAAAATA-AATAATAAAAATAAAATACAAAAA
70224296 TAAAATAAATAATAAAAA
1 TAAAATAAATAATAAAAA
70224314 AATTGCCAAA
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
29 4 0.11
30 3 0.09
31 27 0.77
32 1 0.03
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (31 bp):
TAAAATAAATAATAAAAATAAAATACAAAAA
Found at i:70235297 original size:25 final size:25
Alignment explanation
Indices: 70235263--70235314 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
70235253 TATCAAACAC
70235263 TAAACATTGCCCCAAATGTTGATTA
1 TAAACATTGCCCCAAATGTTGATTA
70235288 TAAACATTGCCCCAAATGTTGATTA
1 TAAACATTGCCCCAAATGTTGATTA
70235313 TA
1 TA
70235315 TCCGAAAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.33
Consensus pattern (25 bp):
TAAACATTGCCCCAAATGTTGATTA
Found at i:70243833 original size:28 final size:28
Alignment explanation
Indices: 70243781--70243834 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
70243771 ATCAAGATTC
* **
70243781 AATTGATGATACATATTTACCTTTAAAA
1 AATTAATGATACATATTTAAATTTAAAA
70243809 AATTAATGATACATATTTAAATTTAA
1 AATTAATGATACATATTTAAATTTAA
70243835 CTGAAATCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.46, C:0.07, G:0.06, T:0.41
Consensus pattern (28 bp):
AATTAATGATACATATTTAAATTTAAAA
Found at i:70250115 original size:21 final size:20
Alignment explanation
Indices: 70250085--70250136 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
70250075 AGCTTAAAGT
*
70250085 AAATAATAATAAAAAATCTA
1 AAATCATAATAAAAAATCTA
* * *
70250105 AAATCATTAATGAAAAGTTTA
1 AAATCA-TAATAAAAAATCTA
70250126 AAATCATAATA
1 AAATCATAATA
70250137 TGTAAAAAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.29
Consensus pattern (20 bp):
AAATCATAATAAAAAATCTA
Found at i:70253469 original size:19 final size:19
Alignment explanation
Indices: 70253438--70253476 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
70253428 ATTTTCGTAT
*
70253438 AAAAATAAAAATA-AAAAA
1 AAAAACAAAAATACAAAAA
70253456 AAAAACAAATAATACAAAAA
1 AAAAACAAA-AATACAAAAA
70253476 A
1 A
70253477 TAAATGAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 4 0.22
20 6 0.33
ACGTcount: A:0.85, C:0.05, G:0.00, T:0.10
Consensus pattern (19 bp):
AAAAACAAAAATACAAAAA
Found at i:70254579 original size:111 final size:111
Alignment explanation
Indices: 70254346--70255138 Score: 1273
Period size: 111 Copynumber: 7.1 Consensus size: 111
70254336 TGATTTATTC
* * ** * *
70254346 CACTGAAACTTCAGAGATTCAAGGAGAAGAGATTTGTAGCCTCGATCTTCTCTACTAAAACTTCG
1 CACTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCA
* * * *
70254411 AGGAAATAAGAATTCAGGTAGAAGGGATTTGTAGCCTCGACCTCCTA
66 AGG-ATTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGACCTACTA
* * * *
70254458 CACTGGAACTTCGGTGATTTAGGGAGAAGAGATTTGTAGCTTCGATCTTCTCTACTGAAACTTCA
1 CACTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCA
*
70254523 AGGATTTAGAATTCAGGTAGAAGGGATTTGTAGCCTCGACCTACTA
66 AGGATTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGACCTACTA
* *
70254569 CACTGAAACTTCGGAGACTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTTA
1 CACTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCA
* *
70254634 AGGATTTAGAATTCAAGTAAAAGGGATTTGTAGCCTCGACCTATTA
66 AGGATTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGACCTACTA
* ** *
70254680 CACTGGAACTTC-GACGATTCAAAGAGAAGAGATTTGTAGCTTCGATCTTCTCTACTGAAACTTC
1 CACTGAAACTTCGGA-GATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTC
* *
70254744 AAGGATTTAGAATTCAGGTAGAAGGGATTTGTAGCCTTGACCTACTA
65 AAGGATTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGACCTACTA
* *
70254791 CACTAAAACTTCAGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCA
1 CACTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCA
*
70254856 AGGATTTAGAATTCAAGTAGAAGGGATTTGTAGCATCGACCTACTA
66 AGGATTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGACCTACTA
*
70254902 CACTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTTTACTGAAACTTCA
1 CACTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCA
70254967 AGGATTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGACCTACTA
66 AGGATTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGACCTACTA
* * *
70255013 CACTGAAACTTCGGCGATTCAGGGAGAAGAAATTTGTAGTTTCGATCTTCACTACTGAAACTTCA
1 CACTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCA
70255078 AGGATTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGACCTACTA
66 AGGATTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGACCTACTA
70255124 CACTGAAACTTCGGA
1 CACTGAAACTTCGGA
70255139 AGTATAAATT
Statistics
Matches: 632, Mismatches: 47, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
110 2 0.00
111 568 0.90
112 62 0.10
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (111 bp):
CACTGAAACTTCGGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCA
AGGATTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGACCTACTA
Found at i:70269788 original size:250 final size:250
Alignment explanation
Indices: 70269347--70269846 Score: 937
Period size: 250 Copynumber: 2.0 Consensus size: 250
70269337 GGAAGGATTA
* *
70269347 GCACCCTCGTAACGCCCAAAATTTGTACCTAATTGATTAATTAATGTCTTAATATCGAAAATTGA
1 GCACCCTCGTAACGCCCAAAATTGGTACCTAATTGATTAATTAATGTCTTAATATCAAAAATTGA
70269412 AAAGATTTAAAACAAATTTGGAAATACGATCCCTTTTTATGAATGTTTAGCTAACTTGAAGTAGA
66 AAAGATTTAAAACAAATTTGGAAATACGATCCCTTTTTATGAATGTTTAGCTAACTTGAAGTAGA
70269477 TATTAAGATTCTCTTGTTTCAAAGGAGTAAAATATCACATCCAACACGTAGGACACGACATTTCC
131 TATTAAGATTCTCTTGTTTCAAAGGAGTAAAATATCACATCCAACACGTAGGACACGACATTTCC
*
70269542 AACCTTTGATGCCCAAAATCATCTCATGATTTCCAAAACTCATGCATTGAAATTT
196 AACCTTCGATGCCCAAAATCATCTCATGATTTCCAAAACTCATGCATTGAAATTT
*
70269597 GCACCCTCGTAACGCCCAAAATTGGTACTTAATTGATTAATTAATGTCTTAATATCAAAAATTGA
1 GCACCCTCGTAACGCCCAAAATTGGTACCTAATTGATTAATTAATGTCTTAATATCAAAAATTGA
* *
70269662 AAAGTTTTAAAACAAATTTGGAAATACGATCCCTTTTTATGAATGTTTAGCTAACTTGAAGTGGA
66 AAAGATTTAAAACAAATTTGGAAATACGATCCCTTTTTATGAATGTTTAGCTAACTTGAAGTAGA
*
70269727 TATTAAGATTCTCTTGTTTCGAAGGAGTAAAATATCACATCCAACACGTAGGACACGACATTTCC
131 TATTAAGATTCTCTTGTTTCAAAGGAGTAAAATATCACATCCAACACGTAGGACACGACATTTCC
70269792 AACCTTCGATGCCCAAAATCATCTCATGATTTCCAAAACTCATGCATTGAAATTT
196 AACCTTCGATGCCCAAAATCATCTCATGATTTCCAAAACTCATGCATTGAAATTT
70269847 TAAAAAGGAT
Statistics
Matches: 243, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
250 243 1.00
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (250 bp):
GCACCCTCGTAACGCCCAAAATTGGTACCTAATTGATTAATTAATGTCTTAATATCAAAAATTGA
AAAGATTTAAAACAAATTTGGAAATACGATCCCTTTTTATGAATGTTTAGCTAACTTGAAGTAGA
TATTAAGATTCTCTTGTTTCAAAGGAGTAAAATATCACATCCAACACGTAGGACACGACATTTCC
AACCTTCGATGCCCAAAATCATCTCATGATTTCCAAAACTCATGCATTGAAATTT
Found at i:70270424 original size:19 final size:18
Alignment explanation
Indices: 70270400--70270435 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
70270390 TAGAATAGCT
70270400 TAAAATAATAATTCAAAAA
1 TAAAATAA-AATTCAAAAA
*
70270419 TAAAATAAAATTTAAAA
1 TAAAATAAAATTCAAAA
70270436 CTGCATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAAATAAAATTCAAAAA
Found at i:70270914 original size:3 final size:3
Alignment explanation
Indices: 70270908--70270950 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
70270898 TAAAGTAGAA
70270908 AAT AAT AAT AAT AA- AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
70270951 GAAAATGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 4 0.10
3 35 0.90
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:70271929 original size:21 final size:22
Alignment explanation
Indices: 70271903--70271949 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
70271893 CTCTGCTCAA
*
70271903 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
70271924 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
70271946 ACTC
1 ACTC
70271950 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:70276749 original size:13 final size:13
Alignment explanation
Indices: 70276731--70276769 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
70276721 CTTGTACCTC
70276731 TTTTTCTTTTTTA
1 TTTTTCTTTTTTA
* *
70276744 TTTTTCCTTTTTC
1 TTTTTCTTTTTTA
70276757 TTTTTCCTTTTTT
1 TTTTT-CTTTTTT
70276770 TTGGCCTTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTCTTTTTTA
Found at i:70277367 original size:16 final size:16
Alignment explanation
Indices: 70277346--70277377 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
70277336 CTTTCACTTT
70277346 ACACTAACTCCAAAGA
1 ACACTAACTCCAAAGA
70277362 ACACTAACTCCAAAGA
1 ACACTAACTCCAAAGA
70277378 GAATATCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.12
Consensus pattern (16 bp):
ACACTAACTCCAAAGA
Found at i:70278091 original size:21 final size:20
Alignment explanation
Indices: 70278067--70278113 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
70278057 AAAAATAATT
*
70278067 AAATAATTCATAAAGTTAAAA
1 AAATAACTC-TAAAGTTAAAA
* *
70278088 AAATAACTCTTAATTTAAAA
1 AAATAACTCTAAAGTTAAAA
70278108 AAATAA
1 AAATAA
70278114 ACGTAATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (20 bp):
AAATAACTCTAAAGTTAAAA
Found at i:70278120 original size:19 final size:20
Alignment explanation
Indices: 70278082--70278121 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
70278072 ATTCATAAAG
* *
70278082 TTAAAAAAATAACTCTTAAT
1 TTAAAAAAATAACACGTAAT
70278102 TTAAAAAAATAA-ACGTAAT
1 TTAAAAAAATAACACGTAAT
70278121 T
1 T
70278122 ATCTAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (20 bp):
TTAAAAAAATAACACGTAAT
Found at i:70280273 original size:50 final size:50
Alignment explanation
Indices: 70280198--70280353 Score: 233
Period size: 50 Copynumber: 3.1 Consensus size: 50
70280188 CCATGGAAAC
*
70280198 AAGTGATAAGTTATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
70280248 AAGTGATAAGTAATAACTTCAGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
70280298 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
70280348 CAAGTG
1 -AAGTG
70280354 GTAGCTTCAG
Statistics
Matches: 94, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
50 87 0.93
51 7 0.07
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:70280522 original size:31 final size:31
Alignment explanation
Indices: 70280349--70280515 Score: 244
Period size: 31 Copynumber: 5.4 Consensus size: 31
70280339 GGCAAATGAC
70280349 AAGTGGTAGCTTCAGCTACCTGATCAGTGAA
1 AAGTGGTAGCTTCAGCTACCTGATCAGTGAA
* * *
70280380 AAGTGGTAGTTTCAGCTACCTGATAAATGAA
1 AAGTGGTAGCTTCAGCTACCTGATCAGTGAA
*
70280411 AAGTGGTAGCTTCTGCTACCTGATCAGTGAA
1 AAGTGGTAGCTTCAGCTACCTGATCAGTGAA
* *
70280442 AAGTGGTAGCTCCGGCTACCTGATCAGTGAA
1 AAGTGGTAGCTTCAGCTACCTGATCAGTGAA
* **
70280473 AAATGGTAGCACCAGCTACCTGATCAGTGAA
1 AAGTGGTAGCTTCAGCTACCTGATCAGTGAA
*
70280504 TAGTGGTAGCTT
1 AAGTGGTAGCTT
70280516 TGGCTACAAG
Statistics
Matches: 120, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 120 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AAGTGGTAGCTTCAGCTACCTGATCAGTGAA
Found at i:70280533 original size:7 final size:7
Alignment explanation
Indices: 70280521--70280549 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
70280511 AGCTTTGGCT
70280521 ACAAGTG
1 ACAAGTG
70280528 ACAAGTG
1 ACAAGTG
70280535 ACAAGTG
1 ACAAGTG
70280542 ACAAGTG
1 ACAAGTG
70280549 A
1 A
70280550 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:70281996 original size:46 final size:44
Alignment explanation
Indices: 70281892--70281999 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
70281882 TGTCTTTGAC
** * * *
70281892 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
70281936 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
70281982 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
70282000 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:70285633 original size:12 final size:12
Alignment explanation
Indices: 70285616--70285648 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
70285606 CGGCCTGCCC
70285616 ATATTAATTTTT
1 ATATTAATTTTT
70285628 ATATT-ATTTTT
1 ATATTAATTTTT
70285639 ATA-TAATTTT
1 ATATTAATTTT
70285649 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:70285816 original size:30 final size:30
Alignment explanation
Indices: 70285773--70285830 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
70285763 TTTAACAAGT
*
70285773 AAATGCCTCTAAAATAATAACAAAATTAGC
1 AAATGCCTCTAAAATAATAAAAAAATTAGC
* *
70285803 AAATGTCTTTAAAATAATAAAAAAATTA
1 AAATGCCTCTAAAATAATAAAAAAATTA
70285831 ACAATAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.28
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAAAAAAATTAGC
Found at i:70286884 original size:4 final size:4
Alignment explanation
Indices: 70286875--70286907 Score: 57
Period size: 4 Copynumber: 8.0 Consensus size: 4
70286865 TTTTTTAAAA
70286875 ATTT ATTT ATTT ATTTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT A-TTT ATTT ATTT ATTT ATTT
70286908 TCTTTCTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 24 0.86
5 4 0.14
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
ATTT
Found at i:70286897 original size:17 final size:17
Alignment explanation
Indices: 70286875--70286908 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
70286865 TTTTTTAAAA
70286875 ATTTATTTATTTATTTT
1 ATTTATTTATTTATTTT
70286892 ATTTATTTATTTATTTT
1 ATTTATTTATTTATTTT
70286909 CTTTCTCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
ATTTATTTATTTATTTT
Found at i:70287053 original size:5 final size:6
Alignment explanation
Indices: 70287036--70287061 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
70287026 CATGGTTTCT
70287036 CTCCCC CTCCCC CTCCCC CTCCCC CT
1 CTCCCC CTCCCC CTCCCC CTCCCC CT
70287062 GTCTCTCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (6 bp):
CTCCCC
Found at i:70294812 original size:12 final size:11
Alignment explanation
Indices: 70294797--70294823 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
70294787 AATAAAATAC
70294797 AAAAAAAAAAG
1 AAAAAAAAAAG
70294808 AAAAAAAAAAG
1 AAAAAAAAAAG
70294819 AAAAA
1 AAAAA
70294824 GAGAACCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:70300632 original size:8 final size:8
Alignment explanation
Indices: 70300619--70300645 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
70300609 TCATCCATTT
70300619 TTTTTTTA
1 TTTTTTTA
70300627 TTTTTTTA
1 TTTTTTTA
70300635 TTTTTTTA
1 TTTTTTTA
70300643 TTT
1 TTT
70300646 CTCTAATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTTA
Found at i:70306842 original size:13 final size:13
Alignment explanation
Indices: 70306824--70306849 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70306814 TGTAGCACCT
70306824 GCCCTTCTTGAAC
1 GCCCTTCTTGAAC
70306837 GCCCTTCTTGAAC
1 GCCCTTCTTGAAC
70306850 CTTTTTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.15, T:0.31
Consensus pattern (13 bp):
GCCCTTCTTGAAC
Found at i:70320191 original size:10 final size:10
Alignment explanation
Indices: 70320178--70320203 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
70320168 TTAAAAAAAT
70320178 AAATATTTAA
1 AAATATTTAA
70320188 AAATATTTAA
1 AAATATTTAA
70320198 AAATAT
1 AAATAT
70320204 ATATTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAATATTTAA
Found at i:70320215 original size:25 final size:25
Alignment explanation
Indices: 70320162--70320214 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
70320152 GGGGTATAGT
70320162 AAAATATTAAAAAAATAAATATTTA
1 AAAATATTAAAAAAATAAATATTTA
* *
70320187 AAAATATT-TAAAAATATATATTTA
1 AAAATATTAAAAAAATAAATATTTA
70320211 AAAA
1 AAAA
70320215 AAGAGACGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (25 bp):
AAAATATTAAAAAAATAAATATTTA
Found at i:70330447 original size:27 final size:28
Alignment explanation
Indices: 70330417--70330471 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
70330407 CAAAAAAGTT
*
70330417 TTTTAAAAA-ATTAAAAA-ATTCATAAAA
1 TTTTAAAAAGATAAAAAATATTC-TAAAA
70330444 TTTTAAAAAGATAAAAAATATTCTAAAA
1 TTTTAAAAAGATAAAAAATATTCTAAAA
70330472 AATTAGACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 9 0.36
28 12 0.48
29 4 0.16
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.33
Consensus pattern (28 bp):
TTTTAAAAAGATAAAAAATATTCTAAAA
Found at i:70333032 original size:22 final size:22
Alignment explanation
Indices: 70333007--70333050 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
70332997 GTCAATCTCA
*
70333007 AGATATAATCTCAGAAATCTAT
1 AGATAGAATCTCAGAAATCTAT
70333029 AGATAGAATCTCAGAAATCTAT
1 AGATAGAATCTCAGAAATCTAT
70333051 CTTCTCAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (22 bp):
AGATAGAATCTCAGAAATCTAT
Found at i:70339866 original size:7 final size:7
Alignment explanation
Indices: 70339850--70339879 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
70339840 GCTTGGTTTG
70339850 CTCATCT
1 CTCATCT
*
70339857 CTCGTCT
1 CTCATCT
70339864 CTCATCT
1 CTCATCT
70339871 CTCATCT
1 CTCATCT
70339878 CT
1 CT
70339880 TTCTCTCTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.10, C:0.43, G:0.03, T:0.43
Consensus pattern (7 bp):
CTCATCT
Found at i:70339912 original size:8 final size:8
Alignment explanation
Indices: 70339893--70339923 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
70339883 TCTCTGGAAA
70339893 TCTCTT-T
1 TCTCTTCT
70339900 TCTCTTCT
1 TCTCTTCT
70339908 TCTCTTCT
1 TCTCTTCT
70339916 TCTCTTCT
1 TCTCTTCT
70339924 CTGGTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (8 bp):
TCTCTTCT
Found at i:70344213 original size:85 final size:85
Alignment explanation
Indices: 70344114--70344283 Score: 295
Period size: 85 Copynumber: 2.0 Consensus size: 85
70344104 GATTTTAGCA
* * *
70344114 GAGCAAAAATATATACTAATAAACAACAAACTATTTACTTCTCTTTCTAATAAATATTCTAATGG
1 GAGCAAAAATATATACTAATAAACAACAAACTATTCACTTCTCTTTCTAAAAAATATTCGAATGG
*
70344179 TTGACGGTAAACTGTAGTTC
66 TTGACAGTAAACTGTAGTTC
*
70344199 GAGCAAAAATATATACTAATAAACAACAAAGTATTCACTTCTCTTTCTAAAAAATATTCGAATGG
1 GAGCAAAAATATATACTAATAAACAACAAACTATTCACTTCTCTTTCTAAAAAATATTCGAATGG
70344264 TTGACAGTAAACTGTAGTTC
66 TTGACAGTAAACTGTAGTTC
70344284 ATAATATCTT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 80 1.00
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.32
Consensus pattern (85 bp):
GAGCAAAAATATATACTAATAAACAACAAACTATTCACTTCTCTTTCTAAAAAATATTCGAATGG
TTGACAGTAAACTGTAGTTC
Found at i:70346914 original size:16 final size:16
Alignment explanation
Indices: 70346893--70346926 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
70346883 ATTAATCTTA
70346893 TATATTTTAATTAAAT
1 TATATTTTAATTAAAT
*
70346909 TATATTTTAATTGAAT
1 TATATTTTAATTAAAT
70346925 TA
1 TA
70346927 AAGAAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TATATTTTAATTAAAT
Found at i:70348229 original size:27 final size:27
Alignment explanation
Indices: 70348199--70348250 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
70348189 TAAATTTGTT
70348199 TCACTTTATATCAAACAAAATCACATA
1 TCACTTTATATCAAACAAAATCACATA
70348226 TCACTTTATATCAAACAAAATCACA
1 TCACTTTATATCAAACAAAATCACA
70348251 AACTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (27 bp):
TCACTTTATATCAAACAAAATCACATA
Done.