Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 229 of 250
Found at i:70701043 original size:15 final size:14
Alignment explanation
Indices: 70701011--70701039 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
70701001 TCACTAGAGC
70701011 TTAAGTTTTATATT
1 TTAAGTTTTATATT
70701025 TTAA-TTTTATATT
1 TTAAGTTTTATATT
70701038 TT
1 TT
70701040 TTAAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (14 bp):
TTAAGTTTTATATT
Found at i:70703750 original size:6 final size:6
Alignment explanation
Indices: 70703736--70703766 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
70703726 CTGACACTCA
70703736 CTGCAAT CTGCAT CTGCAT CTGCAT CTGCAT
1 CTGC-AT CTGCAT CTGCAT CTGCAT CTGCAT
70703767 GTAATTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (6 bp):
CTGCAT
Found at i:70705770 original size:18 final size:18
Alignment explanation
Indices: 70705747--70705783 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
70705737 ATTTAATATT
* *
70705747 TCTTATTTGGGTCTGTTA
1 TCTTATTCGGATCTGTTA
70705765 TCTTATTCGGATCTGTTA
1 TCTTATTCGGATCTGTTA
70705783 T
1 T
70705784 TAAATCCGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.14, G:0.19, T:0.54
Consensus pattern (18 bp):
TCTTATTCGGATCTGTTA
Found at i:70708809 original size:9 final size:9
Alignment explanation
Indices: 70708795--70708830 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
70708785 ATAACATTAA
70708795 AATATATAT
1 AATATATAT
*
70708804 AATATATAA
1 AATATATAT
*
70708813 AATAAATAT
1 AATATATAT
70708822 AATATATAT
1 AATATATAT
70708831 TAGAAATGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
AATATATAT
Found at i:70708815 original size:18 final size:18
Alignment explanation
Indices: 70708779--70708852 Score: 69
Period size: 18 Copynumber: 4.0 Consensus size: 18
70708769 GAATTATATG
*
70708779 TAAATAATAACAT-TAAAA
1 TAAAT-ATAATATATAAAA
*
70708797 TATATATAATATATAAAA
1 TAAATATAATATATAAAA
**
70708815 TAAATATAATATATATTA
1 TAAATATAATATATAAAA
*
70708833 GAAATGATAATAATATAAAA
1 TAAAT-ATAAT-ATATAAAA
70708853 ACTATTGATA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
17 6 0.13
18 28 0.62
19 5 0.11
20 6 0.13
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (18 bp):
TAAATATAATATATAAAA
Found at i:70708920 original size:19 final size:19
Alignment explanation
Indices: 70708896--70708932 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
70708886 TATAAATAAT
*
70708896 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
70708915 AATGATATTAGAAATATA
1 AATGATATTAGAAATATA
70708933 TATAAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:70709026 original size:23 final size:23
Alignment explanation
Indices: 70708987--70709039 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
70708977 TACACATAAT
*
70708987 ATATATACATACAATAT-TGAAA
1 ATATATACATACAATATACGAAA
70709009 CATATATACATA-ATATATACGAAA
1 -ATATATACATACA-ATATACGAAA
70709033 ATATATA
1 ATATATA
70709040 GATATACATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 1 0.04
23 22 0.81
24 4 0.15
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (23 bp):
ATATATACATACAATATACGAAA
Found at i:70709081 original size:31 final size:30
Alignment explanation
Indices: 70709008--70709085 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 30
70708998 CAATATTGAA
70709008 ACATATATACATAATATATACGAAAATATAT
1 ACATA-ATACATAATATATACGAAAATATAT
* ** *
70709039 AGAT-ATACATAATATAATATTAAAATATTT
1 ACATAATACATAATAT-ATACGAAAATATAT
70709069 ACATAATACATAA-ATAT
1 ACATAATACATAATATAT
70709086 TAGGGATAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
29 13 0.32
30 16 0.40
31 11 0.28
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.35
Consensus pattern (30 bp):
ACATAATACATAATATATACGAAAATATAT
Found at i:70709131 original size:12 final size:12
Alignment explanation
Indices: 70709114--70709186 Score: 55
Period size: 12 Copynumber: 6.2 Consensus size: 12
70709104 ATAATAATGC
*
70709114 TACATAAGTATA
1 TACATAAATATA
70709126 TACATAAATATA
1 TACATAAATATA
*
70709138 TTA-A-AAACATA
1 -TACATAAATATA
*
70709149 TACATATATATA
1 TACATAAATATA
*
70709161 TA-AAAATATATA
1 TACATAA-ATATA
70709173 TACACT-AATATA
1 TACA-TAAATATA
70709185 TA
1 TA
70709187 GTAATCATGA
Statistics
Matches: 48, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
10 2 0.04
11 9 0.19
12 33 0.69
13 4 0.08
ACGTcount: A:0.56, C:0.08, G:0.01, T:0.34
Consensus pattern (12 bp):
TACATAAATATA
Found at i:70709149 original size:23 final size:22
Alignment explanation
Indices: 70709123--70709172 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 22
70709113 CTACATAAGT
70709123 ATATACATAAATATATTAAAAAC
1 ATATACATAAATATA-TAAAAAC
* *
70709146 ATATACATATATATATAAAAAT
1 ATATACATAAATATATAAAAAC
70709168 ATATA
1 ATATA
70709173 TACACTAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 11 0.44
23 14 0.56
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (22 bp):
ATATACATAAATATATAAAAAC
Found at i:70711107 original size:91 final size:87
Alignment explanation
Indices: 70711009--70711300 Score: 213
Period size: 93 Copynumber: 3.3 Consensus size: 87
70710999 TAGTCATTAA
* * *
70711009 AAAACAGAAATTGAAAAAATAGCTCAGCAACGTGAGCAAAGGCTCAACTCACTTCTCGCAATATG
1 AAAACAGAAATTG--AAAATACCTCAGC-ACGTG-CCAAA-GCTCAACTCACCTCTCGCAATATG
70711074 AGTTGA-TTTTTGAAAACAGAATTTGC
61 AGTTGATTTTTTGAAAACAGAATTTGC
** * * ** *
70711100 AAAACAGATTTTGAAAATACCTCGGCATGTGCCCGAGCTCAACTCACCTCTCGTAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCACGTGCCAAAGCTCAACTCACCTCTCGCAATATGAGTTG
* **
70711165 ATTTTTTGAAAAGCATAAATTTAAAAA
66 ATTTTTTGAAAA-CA-GAATTT---GC
** * * *
70711192 AAAACATTAATTGAAAAATATCTCAG--CGTGCCCCGAGGCTCAACTCACCTCTCGC-ATATTGA
1 AAAACAGAAATTG-AAAATACCTCAGCACGTG--CCAAAGCTCAACTCACCTCTCGCAATA-TGA
* *
70711254 GTTGA-TTTTTGAAAAACATAAATTG-
62 GTTGATTTTTTG-AAAACAGAATTTGC
70711279 --AACAGAAATTGAAAATACCTCA
1 AAAACAGAAATTGAAAATACCTCA
70711301 ACGTGTCTTG
Statistics
Matches: 160, Mismatches: 30, Indels: 29
0.73 0.14 0.13
Matches are distributed among these distances:
84 10 0.06
85 9 0.06
86 28 0.17
87 12 0.08
88 6 0.04
89 16 0.10
91 18 0.11
92 20 0.12
93 41 0.26
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (87 bp):
AAAACAGAAATTGAAAATACCTCAGCACGTGCCAAAGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTGAAAACAGAATTTGC
Found at i:70711110 original size:13 final size:13
Alignment explanation
Indices: 70711082--70711116 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
70711072 TGAGTTGATT
70711082 TTTGAAAACAGAA
1 TTTGAAAACAGAA
*
70711095 TTTGCAAAACAGAT
1 TTTG-AAAACAGAA
70711109 TTTGAAAA
1 TTTGAAAA
70711117 TACCTCGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.29
Consensus pattern (13 bp):
TTTGAAAACAGAA
Found at i:70711158 original size:86 final size:90
Alignment explanation
Indices: 70711048--70711277 Score: 258
Period size: 93 Copynumber: 2.6 Consensus size: 90
70711038 ACGTGAGCAA
* * ** * *
70711048 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAA-CA-GAATTT-GCAAAACAGATT
1 AGGCTCAACTCACCTCTCG-AATATGAGTTGATTTTTGAAAAGCATAAATTTAAAAAAAAACATT
*
70711110 -TTG-AAAATACCTCGGCATGTG-CCCG
65 ATTGAAAAATACCTCAGC--GTGCCCCG
70711135 A-GCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTGAAAAGCATAAATTTAAAAAAAAACAT
1 AGGCTCAACTCACCTCTCG-AATATGAGTTGA-TTTTTGAAAAGCATAAATTTAAAAAAAAACAT
*
70711199 TAATTGAAAAATATCTCAGCGTGCCCCG
64 T-ATTGAAAAATACCTCAGCGTGCCCCG
* *
70711227 AGGCTCAACTCACCTCTCGCATATTGAGTTGATTTTTGAAAAACATAAATT
1 AGGCTCAACTCACCTCTCGAATA-TGAGTTGATTTTTGAAAAGCATAAATT
70711278 GAACAGAAAT
Statistics
Matches: 122, Mismatches: 11, Indels: 15
0.82 0.07 0.10
Matches are distributed among these distances:
86 28 0.23
87 11 0.09
88 2 0.02
89 5 0.04
90 8 0.07
91 3 0.02
92 29 0.24
93 36 0.30
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (90 bp):
AGGCTCAACTCACCTCTCGAATATGAGTTGATTTTTGAAAAGCATAAATTTAAAAAAAAACATTA
TTGAAAAATACCTCAGCGTGCCCCG
Found at i:70711536 original size:90 final size:89
Alignment explanation
Indices: 70711376--70711608 Score: 274
Period size: 90 Copynumber: 2.6 Consensus size: 89
70711366 GCGTGTCCGA
* **
70711376 GCTCAACTCACCTCTCGCAATATG-ATTGATTTTTTTGAAAAGCATAAATTAAAAAACATTAATT
1 GCTCAACTCACCTCTCGCAATATGAATTGA--TTTTTGAAAAACATAAATTAAAAAACAGAAATT
*
70711440 GAAAATACCTCGGCATGTGATCCTGAG
64 GAAAATACCTCGACATGTGA-CCTGAG
* * *
70711467 GCTCAA-TCCACCTCTAGCAATATGAATTGATTTTTGAAAAACATAAATTGAAAAACGGAAATTG
1 GCTCAACT-CACCTCTCGCAATATGAATTGATTTTTGAAAAACATAAATTAAAAAACAGAAATTG
*
70711531 TAAATACCTCGACATGTGACCTGAG
65 AAAATACCTCGACATGTGACCTGAG
* * ** *
70711556 GTTCAACTCA-CTCTCGCAATAATGAGTTGATTTTTTGATGAACAGAAATTAAA
1 GCTCAACTCACCTCTCGCAAT-ATGAATTGA-TTTTTGAAAAACATAAATTAAA
70711609 CTGCCTCAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
88 9 0.07
89 21 0.17
90 66 0.54
91 21 0.17
92 5 0.04
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (89 bp):
GCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAAACATAAATTAAAAAACAGAAATTGA
AAATACCTCGACATGTGACCTGAG
Found at i:70711696 original size:74 final size:73
Alignment explanation
Indices: 70711525--70711738 Score: 254
Period size: 74 Copynumber: 2.9 Consensus size: 73
70711515 TGAAAAACGG
* * *
70711525 AAATTGTAAATACCTCGACATGTGACCTGAGGTTCAACTCA-CTCTCGCAATAATGAGTTGATTT
1 AAATTGAAAATACCTC-A-ACGTGTCCTGAGGTTCAACTCACCTCTCGCAAT-ATGAGTTGATTT
* *
70711589 TTTGATGAACAG
63 TTT-ATGAAAAA
* * *
70711601 AAATT-AAACTGCCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
70711665 -TGAAAAA
66 ATGAAAAA
* * *
70711672 ATAGATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTT
1 A-A-ATTGAAAATACCTCAACGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTT
70711737 TT
64 TT
70711739 CCTTTGATTC
Statistics
Matches: 120, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
71 6 0.05
72 1 0.01
73 37 0.31
74 64 0.53
75 7 0.06
76 5 0.04
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (73 bp):
AAATTGAAAATACCTCAACGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
ATGAAAAA
Found at i:70720272 original size:7 final size:8
Alignment explanation
Indices: 70720260--70720293 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
70720250 ATAATAAAAT
70720260 ATAT-AAA
1 ATATCAAA
70720267 ATAT-AAA
1 ATATCAAA
70720274 ATATCAAA
1 ATATCAAA
70720282 ATATCAAA
1 ATATCAAA
70720290 ATAT
1 ATAT
70720294 TAGAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (8 bp):
ATATCAAA
Found at i:70720300 original size:16 final size:15
Alignment explanation
Indices: 70720253--70720300 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
70720243 GATGGGAATA
70720253 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
*
70720269 ATAAAATATCAAAAT
1 ATAAAATATTAAAAT
*
70720284 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
70720300 A
1 A
70720301 ATAATAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 7 0.25
16 21 0.75
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:70720463 original size:23 final size:22
Alignment explanation
Indices: 70720412--70720465 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
70720402 ATACTACATC
70720412 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
70720431 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
70720454 AATATGTACATA
1 AATATGTACATA
70720466 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:70720512 original size:22 final size:24
Alignment explanation
Indices: 70720428--70720513 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
70720418 TACATATATA
* *
70720428 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
70720451 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
70720476 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
70720499 -AAGATATATACATAA
1 AAAAATATATACATAA
70720514 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:70720562 original size:23 final size:23
Alignment explanation
Indices: 70720536--70720665 Score: 70
Period size: 23 Copynumber: 5.5 Consensus size: 23
70720526 AAAAAAAAAT
*
70720536 ATATAAATAATATATTATTAAAG
1 ATATAAATAATATAATATTAAAG
* * * *
70720559 ATATAAATAAAATAGTATAAAAT
1 ATATAAATAATATAATATTAAAG
*
70720582 ATATATATACGTAATATAAAATTTAAA-
1 ATATA-A-A--TAATATAATA-TTAAAG
** *
70720609 ATATACCTAATAT-AT-TAAAAG
1 ATATAAATAATATAATATTAAAG
*
70720630 AATATATATAATATAATATT-AAG
1 -ATATAAATAATATAATATTAAAG
*
70720653 AAATATAATAATA
1 ATATA-AATAATA
70720666 ACAAAAAAAA
Statistics
Matches: 80, Mismatches: 17, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
20 4 0.05
22 16 0.20
23 41 0.51
24 2 0.03
25 1 0.01
27 12 0.15
28 4 0.05
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (23 bp):
ATATAAATAATATAATATTAAAG
Found at i:70721239 original size:30 final size:30
Alignment explanation
Indices: 70721146--70721320 Score: 228
Period size: 30 Copynumber: 5.8 Consensus size: 30
70721136 TAGGTACAAG
* *
70721146 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
70721176 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
*
70721206 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
* *
70721236 TGGTGGTGGAAAAGGAGTAGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
70721266 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
70721296 TGGTGGTGGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
70721321 TGAGAAAAGT
Statistics
Matches: 129, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
29 2 0.02
30 127 0.98
ACGTcount: A:0.21, C:0.04, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:70727171 original size:25 final size:23
Alignment explanation
Indices: 70727119--70727173 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
70727109 TATAAATAGT
70727119 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
70727142 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
70727167 AATAGTG
1 AATAGTG
70727174 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:70727317 original size:26 final size:25
Alignment explanation
Indices: 70727271--70727327 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
70727261 AATATATATA
*
70727271 ATAATATTAAAATAAAATAATAAGT
1 ATAATATGAAAATAAAATAATAAGT
* *
70727296 GATAATAGTGAAAAT-AATTAATAGGT
1 -ATAATA-TGAAAATAAAATAATAAGT
70727322 ATAATA
1 ATAATA
70727328 ATAAATATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 6 0.22
26 15 0.56
27 6 0.22
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (25 bp):
ATAATATGAAAATAAAATAATAAGT
Found at i:70727594 original size:9 final size:9
Alignment explanation
Indices: 70727580--70727615 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
70727570 ATAACATTAA
70727580 AATATATAT
1 AATATATAT
*
70727589 AATATATAA
1 AATATATAT
*
70727598 AATACATAT
1 AATATATAT
70727607 AATATATAT
1 AATATATAT
70727616 TAGAAATGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (9 bp):
AATATATAT
Found at i:70727600 original size:18 final size:18
Alignment explanation
Indices: 70727577--70727614 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
70727567 CTAATAACAT
*
70727577 TAAAATATATATAATATA
1 TAAAATACATATAATATA
70727595 TAAAATACATATAATATA
1 TAAAATACATATAATATA
70727613 TA
1 TA
70727615 TTAGAAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (18 bp):
TAAAATACATATAATATA
Found at i:70727705 original size:19 final size:19
Alignment explanation
Indices: 70727681--70727717 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
70727671 TATAAATAAT
*
70727681 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
70727700 AATGATATTAGAAATATA
1 AATGATATTAGAAATATA
70727718 TATAAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:70727815 original size:24 final size:24
Alignment explanation
Indices: 70727774--70727829 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
70727764 ACACAATAAT
*
70727774 ATATATAACATACAATAT-TGAAAA
1 ATATAT-ACATACAATATACGAAAA
70727798 CATATATACATA-ATATATACGAAAA
1 -ATATATACATACA-ATATACGAAAA
70727823 ATATATA
1 ATATATA
70727830 GATATACATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 1 0.04
24 16 0.57
25 11 0.39
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (24 bp):
ATATATACATACAATATACGAAAA
Found at i:70727854 original size:30 final size:30
Alignment explanation
Indices: 70727801--70727875 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
70727791 TTGAAAACAT
*
70727801 ATATACATAATATATACGAAAAATATATAG
1 ATATACATAATATATACGAAAAATATATAC
** *
70727831 ATATACATAATATAATA-TTAAAATATTTAC
1 ATATACATAATAT-ATACGAAAAATATATAC
70727861 ATAATACATAA-ATAT
1 AT-ATACATAATATAT
70727876 TAGGGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 2 0.05
30 26 0.67
31 11 0.28
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.35
Consensus pattern (30 bp):
ATATACATAATATATACGAAAAATATATAC
Found at i:70727939 original size:23 final size:22
Alignment explanation
Indices: 70727913--70727956 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
70727903 CTACATAAGT
70727913 ATATACATAAATATATTAAAAAC
1 ATATACATAAATATA-TAAAAAC
*
70727936 ATATACATATATATATAAAAA
1 ATATACATAAATATATAAAAA
70727957 TACACTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (22 bp):
ATATACATAAATATATAAAAAC
Found at i:70731748 original size:11 final size:11
Alignment explanation
Indices: 70731732--70731757 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
70731722 ATTTTTAAAT
70731732 ATGTAATTATG
1 ATGTAATTATG
70731743 ATGTAATTATG
1 ATGTAATTATG
70731754 ATGT
1 ATGT
70731758 GTGGATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (11 bp):
ATGTAATTATG
Found at i:70733645 original size:17 final size:19
Alignment explanation
Indices: 70733603--70733645 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
70733593 AAAGTTGTAG
70733603 TAGTTATATATTTAAAAAA
1 TAGTTATATATTTAAAAAA
* *
70733622 TAATTATA-ATTTAATAAA
1 TAGTTATATATTTAAAAAA
70733640 -AGTTAT
1 TAGTTAT
70733646 GATTATTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 5 0.24
18 9 0.43
19 7 0.33
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (19 bp):
TAGTTATATATTTAAAAAA
Found at i:70734509 original size:6 final size:6
Alignment explanation
Indices: 70734501--70734552 Score: 86
Period size: 6 Copynumber: 8.7 Consensus size: 6
70734491 AAAGTTGTGA
* *
70734501 TAATAA TAATAA TAATAT TAATAT TAATAT TAATAT TAATAT TAATAT
1 TAATAT TAATAT TAATAT TAATAT TAATAT TAATAT TAATAT TAATAT
70734549 TAAT
1 TAAT
70734553 TAATATGATA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
TAATAT
Found at i:70735082 original size:27 final size:25
Alignment explanation
Indices: 70735052--70735115 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 25
70735042 ATTCTCATTT
70735052 AATTAGAAAATATATATATTTTAA-AAA
1 AATTA-AAAATATAT-TA-TTTAATAAA
*
70735079 AATTTAAAAACATATTATTTAATAAA
1 AA-TTAAAAATATATTATTTAATAAA
*
70735105 ATTTAAAAATA
1 AATTAAAAATA
70735116 AACACGTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
25 13 0.41
26 6 0.19
27 10 0.31
28 3 0.09
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (25 bp):
AATTAAAAATATATTATTTAATAAA
Found at i:70735097 original size:26 final size:26
Alignment explanation
Indices: 70735058--70735113 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 26
70735048 ATTTAATTAG
*
70735058 AAAATATATATATTTTAAAAAAATTTA
1 AAAACATATATA-TTTAAAAAAATTTA
*
70735085 AAAACATAT-TATTTAATAAAATTTA
1 AAAACATATATATTTAAAAAAATTTA
70735110 AAAA
1 AAAA
70735114 TAAACACGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 17 0.63
26 2 0.07
27 8 0.30
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (26 bp):
AAAACATATATATTTAAAAAAATTTA
Found at i:70739865 original size:20 final size:19
Alignment explanation
Indices: 70739819--70739889 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
70739809 AAAATTACAA
70739819 AAAAAATTCTAAATAAATTTT
1 AAAAAATTCTAAAT--ATTTT
70739840 --AAAATTCTAAATATTTAT
1 AAAAAATTCTAAATATTT-T
* *
70739858 AAAAAATTATAAATTTTTTT
1 AAAAAATTCTAAA-TATTTT
70739878 AAAAAA-TCTAAA
1 AAAAAATTCTAAA
70739890 GAATAAATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
17 4 0.09
18 1 0.02
19 17 0.40
20 17 0.40
21 4 0.09
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAAATTCTAAATATTTT
Found at i:70740897 original size:22 final size:23
Alignment explanation
Indices: 70740872--70740930 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
70740862 CAACCAAATT
70740872 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
70740894 AATTCATGCATATTTATAAGAT-
1 AATTCATACATATTTATAAGATA
70740916 AATGTCATCACATAT
1 AAT-TCAT-ACATAT
70740931 CTAAAACCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 9 0.29
23 16 0.52
24 6 0.19
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:70752855 original size:5 final size:5
Alignment explanation
Indices: 70752845--70752871 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
70752835 CTCTCATGTT
70752845 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
70752872 ACTTTTTAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:70757992 original size:13 final size:14
Alignment explanation
Indices: 70757976--70758008 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
70757966 AACATCCAAC
70757976 CAAAAT-AGACATT
1 CAAAATAAGACATT
70757989 CAAAATAAGACATT
1 CAAAATAAGACATT
70758003 CAAAAT
1 CAAAAT
70758009 TGAAGGACGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.58, C:0.15, G:0.06, T:0.21
Consensus pattern (14 bp):
CAAAATAAGACATT
Found at i:70766177 original size:29 final size:29
Alignment explanation
Indices: 70766151--70766207 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
70766141 TAAACACCTC
70766151 ACTAAACCGA-CCACTAACTCCATCACCCT
1 ACTAAACC-ATCCACTAACTCCATCACCCT
*
70766180 ACTAAACCATCCACTACCTCCATCACCC
1 ACTAAACCATCCACTAACTCCATCACCC
70766208 CCACACCCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 1 0.04
29 25 0.96
ACGTcount: A:0.33, C:0.47, G:0.02, T:0.18
Consensus pattern (29 bp):
ACTAAACCATCCACTAACTCCATCACCCT
Found at i:70766252 original size:37 final size:37
Alignment explanation
Indices: 70766167--70766252 Score: 129
Period size: 37 Copynumber: 2.3 Consensus size: 37
70766157 CCGACCACTA
*
70766167 ACTCCATCACCCTACTAAACCATCCACTACCTCCATC
1 ACTCCATCACCCAACTAAACCATCCACTACCTCCATC
* *
70766204 ACCCCCA-CACCCAACTAAACCGTCCACTACCTCCATC
1 A-CTCCATCACCCAACTAAACCATCCACTACCTCCATC
70766241 ACTCCATCACCC
1 ACTCCATCACCC
70766253 CCACTACCTC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
36 4 0.09
37 35 0.81
38 4 0.09
ACGTcount: A:0.29, C:0.52, G:0.01, T:0.17
Consensus pattern (37 bp):
ACTCCATCACCCAACTAAACCATCCACTACCTCCATC
Found at i:70766369 original size:12 final size:11
Alignment explanation
Indices: 70766338--70766382 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
70766328 GGGGATTTAG
70766338 AGAGGATTTTT
1 AGAGGATTTTT
*
70766349 AGAAGATTTTT
1 AGAGGATTTTT
*
70766360 AGAGGAATTTT
1 AGAGGATTTTT
*
70766371 GGAGGAATTTTT
1 AGAGG-ATTTTT
70766383 TTTAGAGAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
11 23 0.82
12 5 0.18
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.42
Consensus pattern (11 bp):
AGAGGATTTTT
Found at i:70766690 original size:63 final size:64
Alignment explanation
Indices: 70766594--70766730 Score: 165
Period size: 63 Copynumber: 2.2 Consensus size: 64
70766584 CCCTTTTTTA
* * *
70766594 TTTTTGTTATTTTACTGTTAAATTAATTAATTTGAGCTTTAT-TCTCATTATTTTTATATT-TGT
1 TTTTTATTATTTTACTATTAAATTAATTAATTTGAG--TTATGTCTCA-TATTATTATATTATGT
70766657 -T
63 AT
* * *
70766658 TTTTTATTATTTT-CTATTAATTTAATTAATTTGAGTTATGTTTCATATTATTATATTATTTAT
1 TTTTTATTATTTTACTATTAAATTAATTAATTTGAGTTATGTCTCATATTATTATATTATGTAT
70766721 TTTTTATTAT
1 TTTTTATTAT
70766731 ATATTTATTA
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
61 15 0.23
62 6 0.09
63 31 0.48
64 12 0.19
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.64
Consensus pattern (64 bp):
TTTTTATTATTTTACTATTAAATTAATTAATTTGAGTTATGTCTCATATTATTATATTATGTAT
Found at i:70767424 original size:127 final size:126
Alignment explanation
Indices: 70767198--70767434 Score: 393
Period size: 127 Copynumber: 1.9 Consensus size: 126
70767188 CATTGATCTT
* *
70767198 CTCTCAAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTCAAAAATTTTCAAAATAAAGGCAATATTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
* *
70767263 ACGTATTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATACTCTTACCAGTTCA
66 ACGTACTGGGTATCACTTTCTTTGTTTGTCTTGAATATTCGAATATACTCTTACCAGTTCA
* *
70767324 CTCTCAAAAATTTTCAAAATAAAGGCAATATTTGGTATTTAAAAGAATTCGAAGAATCGTGCTCT
1 CTCTCAAAAATTTTCAAAATAAAGGCAATATTCGGTATTT-AAAGAATTCGAAGAATCGTGCCCT
* *
70767389 AACGTACTGGGTATCGCTTTCTTTGTTTGTTTTGAATATTCGAATA
65 AACGTACTGGGTATCACTTTCTTTGTTTGTCTTGAATATTCGAATA
70767435 CCCTCTTAAG
Statistics
Matches: 102, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
126 37 0.36
127 65 0.64
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.38
Consensus pattern (126 bp):
CTCTCAAAAATTTTCAAAATAAAGGCAATATTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
ACGTACTGGGTATCACTTTCTTTGTTTGTCTTGAATATTCGAATATACTCTTACCAGTTCA
Found at i:70770499 original size:21 final size:20
Alignment explanation
Indices: 70770461--70770504 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
70770451 CAAAATCCCG
70770461 AACATCAAACTTTAAACCCA
1 AACATCAAACTTTAAACCCA
* *
70770481 AACATTAAATTTTGAAACCCA
1 AACATCAAACTTT-AAACCCA
70770502 AAC
1 AAC
70770505 TCACCCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.50, C:0.25, G:0.02, T:0.23
Consensus pattern (20 bp):
AACATCAAACTTTAAACCCA
Found at i:70771342 original size:15 final size:15
Alignment explanation
Indices: 70771319--70771348 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70771309 TCTCATGCAT
70771319 ATTAACTTAACTTTA
1 ATTAACTTAACTTTA
*
70771334 ATTATCTTAACTTTA
1 ATTAACTTAACTTTA
70771349 CAAATCCACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTAACTTAACTTTA
Found at i:70773409 original size:18 final size:18
Alignment explanation
Indices: 70773375--70773450 Score: 55
Period size: 18 Copynumber: 3.9 Consensus size: 18
70773365 TAAATTAAAT
*
70773375 CTAACAATTTCAA-TATAC
1 CTAACAACTT-AACTATAC
*
70773393 CTAACAACTTAACTATAAGAATT
1 CTAACAACTTAACTAT----A-C
* *
70773416 CTAACAATTTAAATATAC
1 CTAACAACTTAACTATAC
70773434 CTAACAACTTAACTATA
1 CTAACAACTTAACTATA
70773451 AGAATTCTAA
Statistics
Matches: 45, Mismatches: 7, Indels: 12
0.70 0.11 0.19
Matches are distributed among these distances:
17 2 0.04
18 27 0.60
19 1 0.02
22 1 0.02
23 14 0.31
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (18 bp):
CTAACAACTTAACTATAC
Found at i:70773419 original size:23 final size:23
Alignment explanation
Indices: 70773393--70773460 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 23
70773383 TTCAATATAC
70773393 CTAACAACTTAACTATAAGAATT
1 CTAACAACTTAACTATAAGAATT
* * *
70773416 CTAACAATTTAA--AT-A-TA-C
1 CTAACAACTTAACTATAAGAATT
70773434 CTAACAACTTAACTATAAGAATT
1 CTAACAACTTAACTATAAGAATT
70773457 CTAA
1 CTAA
70773461 ACAAATTATA
Statistics
Matches: 34, Mismatches: 6, Indels: 10
0.68 0.12 0.20
Matches are distributed among these distances:
18 11 0.32
19 1 0.03
20 3 0.09
21 3 0.09
22 1 0.03
23 15 0.44
ACGTcount: A:0.49, C:0.18, G:0.03, T:0.31
Consensus pattern (23 bp):
CTAACAACTTAACTATAAGAATT
Found at i:70773431 original size:41 final size:41
Alignment explanation
Indices: 70773374--70773460 Score: 165
Period size: 41 Copynumber: 2.1 Consensus size: 41
70773364 ATAAATTAAA
*
70773374 TCTAACAATTTCAATATACCTAACAACTTAACTATAAGAAT
1 TCTAACAATTTAAATATACCTAACAACTTAACTATAAGAAT
70773415 TCTAACAATTTAAATATACCTAACAACTTAACTATAAGAAT
1 TCTAACAATTTAAATATACCTAACAACTTAACTATAAGAAT
70773456 TCTAA
1 TCTAA
70773461 ACAAATTATA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.32
Consensus pattern (41 bp):
TCTAACAATTTAAATATACCTAACAACTTAACTATAAGAAT
Found at i:70773942 original size:14 final size:14
Alignment explanation
Indices: 70773923--70773965 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
70773913 TTTAAAATTA
70773923 ATAATTATTTAAAC
1 ATAATTATTTAAAC
* *
70773937 ATAATTATTCAAAA
1 ATAATTATTTAAAC
* *
70773951 AAAAATATTTAAAC
1 ATAATTATTTAAAC
70773965 A
1 A
70773966 CAAAATATAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATTATTTAAAC
Found at i:70774606 original size:22 final size:22
Alignment explanation
Indices: 70774576--70774623 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
70774566 TATTATATAT
70774576 AATATATATACCAAACTCAAATCC
1 AATATAT-TACCAAAC-CAAATCC
* *
70774600 AATATATTACCCAACCAAGTCC
1 AATATATTACCAAACCAAATCC
70774622 AA
1 AA
70774624 ACCCAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 8 0.36
23 7 0.32
24 7 0.32
ACGTcount: A:0.48, C:0.27, G:0.02, T:0.23
Consensus pattern (22 bp):
AATATATTACCAAACCAAATCC
Found at i:70776500 original size:22 final size:22
Alignment explanation
Indices: 70776472--70776515 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
70776462 ACCTAAGGAA
70776472 GTCTCTTTAAAAGGTAACTCAT
1 GTCTCTTTAAAAGGTAACTCAT
70776494 GTCTCTTTAAAAGGTAACTCAT
1 GTCTCTTTAAAAGGTAACTCAT
70776516 TTACTCAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (22 bp):
GTCTCTTTAAAAGGTAACTCAT
Found at i:70777580 original size:12 final size:12
Alignment explanation
Indices: 70777563--70777597 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
70777553 ATTATTATAC
*
70777563 GTTATTGTTATT
1 GTTATTTTTATT
70777575 GTTATTTTTATT
1 GTTATTTTTATT
*
70777587 TTTATTTTTAT
1 GTTATTTTTAT
70777598 AAAATTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (12 bp):
GTTATTTTTATT
Found at i:70778794 original size:16 final size:17
Alignment explanation
Indices: 70778775--70778807 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
70778765 TTAATCTTTC
*
70778775 AAATTATTAA-AAAATA
1 AAATTATAAACAAAATA
70778791 AAATTATAAACAAAATA
1 AAATTATAAACAAAATA
70778808 TATTTTCTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (17 bp):
AAATTATAAACAAAATA
Found at i:70782262 original size:342 final size:337
Alignment explanation
Indices: 70781574--70782253 Score: 1108
Period size: 342 Copynumber: 2.0 Consensus size: 337
70781564 AAGCTAAGGA
70781574 TAAAAGTAGAGAAAGCTGGTGAGGCTTAGGTTCGGTATATAACTTGGATAGTAAATCAGTGCTGT
1 TAAAAGTAGAGAAAGCTGGTGAGGCTTAGGTTCGGTATATAACTTGGATAGTAAATCAGTGCTGT
70781639 TCCTTTTATATTTGTTTTCTCTAAAGAGCATGCACATGTTGGAATTTAGGCTGTATGAACCTTGT
66 TCCTTTTATATTTGTTTTCTCTAAAGAGCATGCACATGTTGGAATTTAGGCTGTATGAACCTTGT
* *
70781704 TTTGAAGGTTTCTTTGTATGTGTCTGTGATGAAACAATTCAGTAATTGTTTTGCTTGTGTTAATC
131 TTTGAAGGTTTCTTTGTATCTGTCTGTGATGAAACAATTCAGTAATTGTTTTGCTCGTGTTAATC
* * * *
70781769 TTCACTATCTCAATTTTAGATTCGTTTCCTATAGTCGATCTGCATGAAGCTGAGATTGAGAGATA
196 TTCACTATCTCAATTTTAGATTAGTTTCCTATAATCAATCTGCATGAAGCTGAAATTGAGAGATA
*
70781834 CTCCCTCCATCCAGTAAAATTGGAACTTTTTTATTTTTAGTTGTAAAAAATTTTCAACTTTAACC
261 CTCCCTCCATCCAGTAAAATTGGAACTTTTTTATTTTTAGTGGTAAAAAATTTTCAACTTTAACC
70781899 TCTTATTCTTTAAAATT
326 TCTTA----TT-AAATT
*
70781916 TAAAAGTAGAGAAAGCTGGTGAGGCTTAGGTTTGGTATATAACTTGGATAGTAAATCAGTGCTGT
1 TAAAAGTAGAGAAAGCTGGTGAGGCTTAGGTTCGGTATATAACTTGGATAGTAAATCAGTGCTGT
* *
70781981 TCCTTTTTTATTTGTTTTCTCTAAAGAGCATGCATATGTTGGAATTTAGGCTGTATGAACCTTGT
66 TCCTTTTATATTTGTTTTCTCTAAAGAGCATGCACATGTTGGAATTTAGGCTGTATGAACCTTGT
* *
70782046 TTTGAAGGTTTCTTTGTATCTGTCTGTGATGAAACAATTCGGTAATTTTTTTGCTCGTGTTAATC
131 TTTGAAGGTTTCTTTGTATCTGTCTGTGATGAAACAATTCAGTAATTGTTTTGCTCGTGTTAATC
*
70782111 TTCACTATGTCAATTTTAGATTAGTTTCCTATAATCAATCTGCATGAAGTGAATGCTGAAATTGA
196 TTCACTATCTCAATTTTAGATTAGTTTCCTATAATCAATCTGC----A-TGAA-GCTGAAATTGA
* * *
70782176 GAGATACTCCCTCCATCCCAGTAAATTTGTAACTTTTTTATTTTTTGTGGTAAAAAATTTTCAAC
255 GAGATACTCCCTCCAT-CCAGTAAAATTGGAACTTTTTTATTTTTAGTGGTAAAAAATTTTCAAC
70782241 TTTAACCTCTTAT
319 TTTAACCTCTTAT
70782254 GATTTAAAAT
Statistics
Matches: 315, Mismatches: 16, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
342 227 0.72
345 1 0.00
346 1 0.00
347 4 0.01
348 26 0.08
349 56 0.18
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (337 bp):
TAAAAGTAGAGAAAGCTGGTGAGGCTTAGGTTCGGTATATAACTTGGATAGTAAATCAGTGCTGT
TCCTTTTATATTTGTTTTCTCTAAAGAGCATGCACATGTTGGAATTTAGGCTGTATGAACCTTGT
TTTGAAGGTTTCTTTGTATCTGTCTGTGATGAAACAATTCAGTAATTGTTTTGCTCGTGTTAATC
TTCACTATCTCAATTTTAGATTAGTTTCCTATAATCAATCTGCATGAAGCTGAAATTGAGAGATA
CTCCCTCCATCCAGTAAAATTGGAACTTTTTTATTTTTAGTGGTAAAAAATTTTCAACTTTAACC
TCTTATTAAATT
Found at i:70784278 original size:39 final size:39
Alignment explanation
Indices: 70784235--70784314 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
70784225 AGACCCGTGA
70784235 ACATGTGCAGCTTGCAAAGACTTTGGGTGTGTCAAAGCT
1 ACATGTGCAGCTTGCAAAGACTTTGGGTGTGTCAAAGCT
70784274 ACATGTGCAGCTTGCAAAGACTTTGGGTGTGTCAAAGCT
1 ACATGTGCAGCTTGCAAAGACTTTGGGTGTGTCAAAGCT
70784313 AC
1 AC
70784315 TTGTAGTAGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (39 bp):
ACATGTGCAGCTTGCAAAGACTTTGGGTGTGTCAAAGCT
Found at i:70790525 original size:427 final size:420
Alignment explanation
Indices: 70789843--70791405 Score: 1299
Period size: 442 Copynumber: 3.6 Consensus size: 420
70789833 ACTTAAGTAC
* * ** *
70789843 AGAGGTGTTGAGAGATGTAGTGTCCAGATGTAGCTC-AGATAACAACTTTAGAC-T-GATACTGG
1 AGAGGT-TTGAGAGATGTAGTGCCCAGATGTAGCTCAAG-TAATAAC-AAACACATAG-TACTGG
* * * * *
70789905 GCAACGATGGACTCCATCAAGGGATGGCTAATAGACAGATTGGAAACCCAAACTATCAACTCCTT
62 GCAACGATGGACTCCTTCAAGGGATGACTAATAGATAGATTGGAAACCCAAACCATCAACTACTT
** * *
70789970 CCCTATCTTTTATTTTCCAGACATGTAACAGTCATTACCATCAAATCTTAGGTAGACACCTGACT
127 CCCTATCTTTTATTTTCCAGACATGTAACAGTCCCTACAATCAAATCTAAGGTAGACACCTGACT
** * * ** * *
70790035 ACGTCTGGTTAGGCTCATGGGACGCAAACAACTATT-AATAGT--TTC-CAGATAAACACC-AAA
192 ACGTC-GGTT-GGAACGT-GCAAAC-AACAAATATTAAATAATAGTTCACAGATAAACACCTAAA
70790095 AATGCATCTATATTCAAAAGATACAAAAGCACAGAAAGTATTTCCAAATGCATATGTTAAGTGTT
253 AATGCATCTATATTCAAAAGATA-AAAAGCACAGAAAGTATTTCCAAA-GCATAT-TTAAGTGTT
70790160 ATTATCATTTGCTTCACTACCCCTTCAGAAAACAAACAGATTCGCAACAAATGATCCACTATATC
315 ATTATCATTTGCTTCACTACCCCTT-A-AAAACAAACAGATTCGCAAC-AATGATCCACTATATC
* * * *
70790225 CAGATGGCCTTCATGCTTGGATGTATAGATTAAATATTGATAGAA
377 CAGATGGCCTTCATACTTGAATGTATAGATTGACTA-TGATAGAA
***
70790270 AGAGGTTTCGAGAGATGTAGTGCCCAGATGTAGCTTGTGTAATAACAAA-ACATAGTACTGGGCA
1 AGAGGTTT-GAGAGATGTAGTGCCCAGATGTAGCTCAAGTAATAACAAACACATAGTACTGGGCA
70790334 ACGATGGACTCCTTCAAGGGGATGACTAATAGATAGATTGGAAACCCAAACCATCAACTACTTCC
65 ACGATGGACTCCTTCAA-GGGATGACTAATAGATAGATTGGAAACCCAAACCATCAACTACTTCC
* * *
70790399 CTATCTTTTATTTTCCAGACATGTAACAGTCCCTACAATCATATTCCAAGGTAGACACCTAACTA
129 CTATCTTTTATTTTCCAGACATGTAACAGTCCCTACAATCA-AATCTAAGGTAGACACCTGACTA
* * *
70790464 C-TC-G-TGGAACGTGTAAACAACTAAATATTAAATAATAGTTCATAGACAAACACCTAAAAATG
193 CGTCGGTTGGAACGTGCAAACAAC-AAATATTAAATAATAGTTCACAGATAAACACCTAAAAATG
* * * * * * * *
70790526 CATCAATATTC-AAA-AT---AAGTTA-ATATAAG-AATT-GAGAGC--ATTTAAGTGCTACTAT
257 CATCTATATTCAAAAGATAAAAAG-CACAGA-AAGTATTTCCAAAGCATATTTAAGTGTTATTAT
* * * * * * * *
70790581 CATTTGCTTTACTATCTCTTAACAAACAGATTCAGAGGAGTGGTCAAC-AT-ATCCA--AAAT-A
320 CATTTGCTTCACTACCCCTTAA-AAACA-A---ACA-GATTCG-CAACAATGATCCACTATATCC
* * * *
70790641 AGAATGGCC-TCATACTAGAATGCATA-AGTTGACTACTG-GAG-C
378 AG-ATGGCCTTCATACTTGAATGTATAGA-TTGACTA-TGATAGAA
* * *
70790683 AGAGGAGTTGAGAGATGTAGTGTCCAGATGTAGCTCAAGTAATAACTAAACAAATAGTACTGGGC
1 AGAGG-TTTGAGAGATGTAGTGCCCAGATGTAGCTCAAGTAATAAC-AAACACATAGTACTGGGC
* * * *
70790748 AACGATGGACTCTTTCAAGGGATGGCTAATAGATAGATTGGAAACCCAAACTATCAACTCCTTCC
64 AACGATGGACTCCTTCAAGGGATGACTAATAGATAGATTGGAAACCCAAACCATCAACTACTTCC
* * *
70790813 CTATCATCTATTTTCCAGACATGTAACAGTCCCTACCATCAAATCTAAGGTAGACACCTGACTAC
129 CTATCTTTTATTTTCCAGACATGTAACAGTCCCTACAATCAAATCTAAGGTAGACACCTGACTAC
* * * *
70790878 GTCTGGTTGGACTCATGGGACACAAACAACAAAATATTAAATAATAGTTTACAGATAAACA-AT-
194 GTC-GGTTGGA---ACGTG---CAAACAAC-AAATATTAAATAATAGTTCACAGATAAACACCTA
* * *
70790941 AAAATGCATCTGTATTCAAAAGATAAAGAAGCACGGGAAGTATTTCCAAACGCATATATTAAGTG
251 AAAATGCATCTATATTCAAAAGATAAA-AAGCACAGAAAGTATTTCCAAA-GCATAT-TTAAGTG
* * * * * *
70791006 TTATTATAATTTGTTTCAGTATCCCATTAAAAAACAATCAGATTCACAAC-ATGCGATCCACTAT
313 TTATTATCATTTGCTTCACTA-CCCCTT-AAAAACAAACAGATTCGCAACAAT--GATCCACTAT
* * * * *
70791070 GTCCAAAATAAGGATGACCTTCATACTTGAATATATAGATTGGCTGCAT-ATATAA
374 ATCC------A-GATGGCCTTCATACTTGAATGTATAGATTGACT--ATGATAGAA
* ** *
70791125 AGAGGTGTTGAGAGATGTAATGCCCAGACATAGCTCAAGTAATAACAGAACACATAGTACCGGGC
1 AGAGGT-TTGAGAGATGTAGTGCCCAGATGTAGCTCAAGTAATAACA-AACACATAGTACTGGGC
* * * * *
70791190 AATGATGGACTCCTTCAAGGGATGTA-TAACAGATATAATGGAAACCCAAACCATCAACTACTTT
64 AACGATGGACTCCTTCAAGGGATG-ACTAATAGATAGATTGGAAACCCAAACCATCAACTACTTC
* * * *
70791254 CCTATCTTTTATTTTCCAGACATGTAACAGTCCCTAAAACCATATCAAAGGTAGACACCTGACTA
128 CCTATCTTTTATTTTCCAGACATGTAACAGTCCCTACAATCAAATCTAAGGTAGACACCTGACTA
* * * * * * * * *
70791319 TGTCTGGTTAGAATCATGGAACGCAAATAACTAAATATTAAAAAACAGTTCATAGACAAACATCT
193 CGTC-GGTTGGAA-C---G--TGCAAACAAC-AAATATTAAATAATAGTTCACAGATAAACACCT
* *
70791384 ATAAATGCATCAATATTCAAAA
250 AAAAATGCATCTATATTCAAAA
70791406 TAAGTTGCTT
Statistics
Matches: 906, Mismatches: 149, Indels: 145
0.75 0.12 0.12
Matches are distributed among these distances:
413 59 0.07
414 93 0.10
415 58 0.06
416 40 0.04
417 6 0.01
418 5 0.01
419 6 0.01
420 9 0.01
421 30 0.03
422 17 0.02
423 45 0.05
424 1 0.00
425 8 0.01
426 46 0.05
427 150 0.17
428 26 0.03
429 3 0.00
430 5 0.01
431 2 0.00
432 25 0.03
433 8 0.01
434 2 0.00
439 7 0.01
440 20 0.02
441 4 0.00
442 210 0.23
443 2 0.00
444 18 0.02
445 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (420 bp):
AGAGGTTTGAGAGATGTAGTGCCCAGATGTAGCTCAAGTAATAACAAACACATAGTACTGGGCAA
CGATGGACTCCTTCAAGGGATGACTAATAGATAGATTGGAAACCCAAACCATCAACTACTTCCCT
ATCTTTTATTTTCCAGACATGTAACAGTCCCTACAATCAAATCTAAGGTAGACACCTGACTACGT
CGGTTGGAACGTGCAAACAACAAATATTAAATAATAGTTCACAGATAAACACCTAAAAATGCATC
TATATTCAAAAGATAAAAAGCACAGAAAGTATTTCCAAAGCATATTTAAGTGTTATTATCATTTG
CTTCACTACCCCTTAAAAACAAACAGATTCGCAACAATGATCCACTATATCCAGATGGCCTTCAT
ACTTGAATGTATAGATTGACTATGATAGAA
Found at i:70793208 original size:18 final size:18
Alignment explanation
Indices: 70793185--70793219 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70793175 TACTTTTATT
*
70793185 TATATTAATTATTTATAA
1 TATATTAATAATTTATAA
*
70793203 TATATTTATAATTTATA
1 TATATTAATAATTTATA
70793220 TATTATTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TATATTAATAATTTATAA
Found at i:70793238 original size:13 final size:13
Alignment explanation
Indices: 70793178--70793270 Score: 55
Period size: 13 Copynumber: 6.9 Consensus size: 13
70793168 ATCAAAATAC
70793178 TTTTATTTATATTA
1 TTTTATTT-TATTA
*
70793192 -ATTATTTATAATATA
1 TTTTATTT-T-AT-TA
*
70793207 TTTATAATTTA-TA
1 TTT-TATTTTATTA
*
70793220 TATTATTTTATTA
1 TTTTATTTTATTA
* *
70793233 TTTTATTTAAATA
1 TTTTATTTTATTA
*
70793246 TTTTATTTCATTA
1 TTTTATTTTATTA
* *
70793259 TATTAATTTATT
1 TTTTATTTTATT
70793271 TTATTTAAGA
Statistics
Matches: 61, Mismatches: 13, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
12 6 0.10
13 44 0.72
14 2 0.03
15 3 0.05
16 2 0.03
17 4 0.07
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (13 bp):
TTTTATTTTATTA
Found at i:70793240 original size:31 final size:31
Alignment explanation
Indices: 70793200--70793271 Score: 76
Period size: 31 Copynumber: 2.3 Consensus size: 31
70793190 TAATTATTTA
* *
70793200 TAATATATTTATAAT-TTATATATT-ATTTTAT
1 TAATTTATTTA-AATATTATAT-TTCATTATAT
* *
70793231 TATTTTATTTAAATATTTTATTTCATTATAT
1 TAATTTATTTAAATATTATATTTCATTATAT
70793262 TAATTTATTT
1 TAATTTATTT
70793272 TATTTAAGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
30 5 0.15
31 29 0.85
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (31 bp):
TAATTTATTTAAATATTATATTTCATTATAT
Found at i:70793246 original size:26 final size:27
Alignment explanation
Indices: 70793217--70793268 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
70793207 TTTATAATTT
* *
70793217 ATATATTATTTTATTAT-TTTATTTAA
1 ATATATTATTTCATTATATTAATTTAA
*
70793243 ATATTTTATTTCATTATATTAATTTA
1 ATATATTATTTCATTATATTAATTTA
70793269 TTTTATTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (27 bp):
ATATATTATTTCATTATATTAATTTAA
Found at i:70794863 original size:18 final size:18
Alignment explanation
Indices: 70794840--70794887 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
70794830 TGAATAGTAC
70794840 ACTTTAATAAAAAAATTA
1 ACTTTAATAAAAAAATTA
* *
70794858 ACTTTAGTAATAAAATTA
1 ACTTTAATAAAAAAATTA
* *
70794876 AATTAAATAAAA
1 ACTTTAATAAAA
70794888 GTAAAGTCAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (18 bp):
ACTTTAATAAAAAAATTA
Found at i:70795065 original size:138 final size:138
Alignment explanation
Indices: 70794911--70795193 Score: 548
Period size: 138 Copynumber: 2.1 Consensus size: 138
70794901 ATTCAATAAA
*
70794911 AAAATAAAATATAGTGATAAATTTATTTATAATCCACAAGGATGGTGGCAAATATCAATTAAAGT
1 AAAATAAAATATAGTGATAAATTTATTTATAATCCACAAGGATGATGGCAAATATCAATTAAAGT
*
70794976 GAAGAATAGTGATAATTTTTAATTTCCACTTGAAGTATAGTGACAGATTTGTATATTAACTCATA
66 GAAGAATAGTGATAATTTTTAATTTCCACTTGAAGTATAGTGACAAATTTGTATATTAACTCATA
70795041 AAAATGTT
131 AAAATGTT
70795049 AAAATAAAATATAGTGATAAATTTATTTATAATCCACAAGGATGATGGCAAATATCAATTAAAGT
1 AAAATAAAATATAGTGATAAATTTATTTATAATCCACAAGGATGATGGCAAATATCAATTAAAGT
70795114 GAAGAATAGTGATAATTTTTAATTTCCACTTGAAGTATAGTGACAAATTTGTATATTAACTCATA
66 GAAGAATAGTGATAATTTTTAATTTCCACTTGAAGTATAGTGACAAATTTGTATATTAACTCATA
70795179 AAAATGTT
131 AAAATGTT
70795187 AAAATAA
1 AAAATAA
70795194 TGTTAGCTTG
Statistics
Matches: 143, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 143 1.00
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (138 bp):
AAAATAAAATATAGTGATAAATTTATTTATAATCCACAAGGATGATGGCAAATATCAATTAAAGT
GAAGAATAGTGATAATTTTTAATTTCCACTTGAAGTATAGTGACAAATTTGTATATTAACTCATA
AAAATGTT
Found at i:70798631 original size:17 final size:17
Alignment explanation
Indices: 70798609--70798642 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
70798599 TTCTCATAAA
*
70798609 TTTATTTAAGTATATTG
1 TTTATTTAAATATATTG
70798626 TTTATTTAAATATATTG
1 TTTATTTAAATATATTG
70798643 AGGAGGGTCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (17 bp):
TTTATTTAAATATATTG
Found at i:70800667 original size:61 final size:61
Alignment explanation
Indices: 70800564--70800684 Score: 190
Period size: 61 Copynumber: 2.0 Consensus size: 61
70800554 GTAAATTATA
* *
70800564 AGGATCAAATAATTTAGTTCATTTGCTGTCAACTTTGTGTTACTAAAAATTTTGTCACTTG
1 AGGATCAAATAATTTAGTTCATGTGCTATCAACTTTGTGTTACTAAAAATTTTGTCACTTG
* *
70800625 AGGATCAAATAATTTAGTTCCTGTGCTATCAGCTTT-TGGTTACTAAAAATTTTGTCACTT
1 AGGATCAAATAATTTAGTTCATGTGCTATCAACTTTGT-GTTACTAAAAATTTTGTCACTT
70800685 AACTGAGTGA
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
60 1 0.02
61 54 0.98
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (61 bp):
AGGATCAAATAATTTAGTTCATGTGCTATCAACTTTGTGTTACTAAAAATTTTGTCACTTG
Found at i:70805176 original size:2 final size:2
Alignment explanation
Indices: 70805169--70805193 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
70805159 CCAAGTAGAT
70805169 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
70805194 GTGTGTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:70805198 original size:2 final size:2
Alignment explanation
Indices: 70805193--70805222 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
70805183 TCTCTCTCTC
70805193 TG TG TG TG TG TG TG TG TG -G TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
70805223 AGATAGAGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:70815426 original size:18 final size:18
Alignment explanation
Indices: 70815403--70815439 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
70815393 AATATAAAAA
70815403 TTTTAAAAA-TATATTAGT
1 TTTTAAAAATTA-ATTAGT
70815421 TTTTAAAAATTAATTAGT
1 TTTTAAAAATTAATTAGT
70815439 T
1 T
70815440 ACTTACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (18 bp):
TTTTAAAAATTAATTAGT
Found at i:70822830 original size:50 final size:50
Alignment explanation
Indices: 70822711--70822886 Score: 182
Period size: 50 Copynumber: 3.5 Consensus size: 50
70822701 TGAGGTCGCA
* * * * *
70822711 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGAAAACT-GT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGGTGGGTCACG
**
70822762 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGGTG-GGTCACG
* * *
70822812 TGTGTATTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTTGCA--
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGGTGGGT-CACG
70822861 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
70822887 TACGTACCAG
Statistics
Matches: 107, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 25 0.23
50 42 0.39
51 35 0.33
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGGTGGGTCACG
Found at i:70823415 original size:26 final size:26
Alignment explanation
Indices: 70823386--70823467 Score: 164
Period size: 26 Copynumber: 3.2 Consensus size: 26
70823376 TGATAAAAAT
70823386 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70823412 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70823438 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70823464 TGAT
1 TGAT
70823468 GGGCATTTCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:70824984 original size:26 final size:26
Alignment explanation
Indices: 70824955--70825007 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
70824945 TTTACAGTTT
70824955 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
70824981 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
70825007 T
1 T
70825008 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:70827531 original size:14 final size:17
Alignment explanation
Indices: 70827500--70827536 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
70827490 ATTATAAAGG
70827500 ATATTATTAAATTAATT
1 ATATTATTAAATTAATT
70827517 ATATTA-TAAA-T-ATT
1 ATATTATTAAATTAATT
70827531 ATATTA
1 ATATTA
70827537 AGAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 9 0.45
15 1 0.05
16 4 0.20
17 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTATTAAATTAATT
Found at i:70827713 original size:14 final size:14
Alignment explanation
Indices: 70827687--70827737 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
70827677 GAAAACAAAA
70827687 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
70827701 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* * *
70827715 TAAGTTAAAATAAAA
1 GAA-ATAAAATAAAG
70827730 G-AATAAAA
1 GAAATAAAA
70827738 GAAACAAAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 5 0.17
14 16 0.55
15 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:70827748 original size:17 final size:16
Alignment explanation
Indices: 70827726--70827759 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
70827716 AAGTTAAAAT
70827726 AAAAGAATAAAAGAAAC
1 AAAAGAA-AAAAGAAAC
*
70827743 AAAAGAAGAAAGAAAC
1 AAAAGAAAAAAGAAAC
70827759 A
1 A
70827760 GAATAGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAC
Found at i:70828912 original size:37 final size:39
Alignment explanation
Indices: 70828853--70828948 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
70828843 CGGATAGATT
* * * *
70828853 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
70828890 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
70828929 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
70828949 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:70834998 original size:14 final size:17
Alignment explanation
Indices: 70834967--70835003 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
70834957 ATTATAAAGG
70834967 ATATTATTAAATTAATT
1 ATATTATTAAATTAATT
70834984 ATATTA-TAAA-T-ATT
1 ATATTATTAAATTAATT
70834998 ATATTA
1 ATATTA
70835004 AGAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 9 0.45
15 1 0.05
16 4 0.20
17 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTATTAAATTAATT
Found at i:70835170 original size:13 final size:13
Alignment explanation
Indices: 70835152--70835204 Score: 54
Period size: 13 Copynumber: 3.9 Consensus size: 13
70835142 AAGGAAAACA
70835152 AAAGAAATAAAAT
1 AAAGAAATAAAAT
*
70835165 AAAGAAATAAAGT
1 AAAGAAATAAAAT
*
70835178 AAAGTAAGTTAAAAT
1 AAAG-AA-ATAAAAT
70835193 AAA-AGAATAAAA
1 AAAGA-AATAAAA
70835205 GAAACAAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 22 0.67
14 3 0.09
15 8 0.24
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (13 bp):
AAAGAAATAAAAT
Found at i:70835215 original size:17 final size:16
Alignment explanation
Indices: 70835193--70835226 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
70835183 AAGTTAAAAT
70835193 AAAAGAATAAAAGAAAC
1 AAAAGAA-AAAAGAAAC
*
70835210 AAAAGAAGAAAGAAAC
1 AAAAGAAAAAAGAAAC
70835226 A
1 A
70835227 GAATAGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAC
Found at i:70836144 original size:23 final size:25
Alignment explanation
Indices: 70836100--70836177 Score: 70
Period size: 24 Copynumber: 3.1 Consensus size: 25
70836090 TGAAAATGTG
* * *
70836100 TGAAGTTGTGAAATAATTATTG-AT
1 TGAAGGTGTGAAAAAATGATTGAAT
70836124 TGAAGGTG-GAAAAAATGATTGAAT
1 TGAAGGTGTGAAAAAATGATTGAAT
* **
70836148 TGAAAGTGTGAGAAATTGTGATTGAAT
1 TGAAGGTGTGA-AAA-AATGATTGAAT
70836175 TGA
1 TGA
70836178 GAATATATGT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
23 11 0.25
24 16 0.36
25 2 0.05
26 3 0.07
27 12 0.27
ACGTcount: A:0.40, C:0.00, G:0.27, T:0.33
Consensus pattern (25 bp):
TGAAGGTGTGAAAAAATGATTGAAT
Found at i:70836380 original size:37 final size:39
Alignment explanation
Indices: 70836321--70836416 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
70836311 CGGATAGATT
* * * *
70836321 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
70836358 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
70836397 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
70836417 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:70837946 original size:18 final size:18
Alignment explanation
Indices: 70837925--70837962 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
70837915 TATTATTGTT
*
70837925 ATTGTTATTATTATT-TAA
1 ATTGATATTA-TATTATAA
70837943 ATTGATATTATATTATAA
1 ATTGATATTATATTATAA
70837961 AT
1 AT
70837963 GAATAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (18 bp):
ATTGATATTATATTATAA
Found at i:70838129 original size:15 final size:15
Alignment explanation
Indices: 70838109--70838137 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
70838099 GAAATAAAGG
70838109 AAAGAAACAGAATGA
1 AAAGAAACAGAATGA
70838124 AAAGAAACAGAATG
1 AAAGAAACAGAATG
70838138 TGGAAACGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.07, G:0.21, T:0.07
Consensus pattern (15 bp):
AAAGAAACAGAATGA
Found at i:70838148 original size:18 final size:15
Alignment explanation
Indices: 70838107--70838152 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
70838097 AGGAAATAAA
70838107 GGAAAGAAACAGAAT
1 GGAAAGAAACAGAAT
*
70838122 GAAAAGAAACAGAATGT
1 GGAAAGAAACAGAA--T
70838139 GGAAACGAAACAGA
1 GGAAA-GAAACAGA
70838153 GAATAAATAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 13 0.50
17 5 0.19
18 8 0.31
ACGTcount: A:0.59, C:0.09, G:0.26, T:0.07
Consensus pattern (15 bp):
GGAAAGAAACAGAAT
Found at i:70838565 original size:23 final size:21
Alignment explanation
Indices: 70838518--70838558 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
70838508 TTTGGTTAAA
70838518 AATTGAATAGAAATGAAGTATG
1 AATTGAATAGAAA-GAAGTATG
70838540 AATTGAGATAGAAA-AAGTA
1 AATTGA-ATAGAAAGAAGTA
70838559 AGTGAATCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 6 0.33
23 7 0.39
ACGTcount: A:0.54, C:0.00, G:0.22, T:0.24
Consensus pattern (21 bp):
AATTGAATAGAAAGAAGTATG
Found at i:70838927 original size:15 final size:15
Alignment explanation
Indices: 70838879--70838928 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
70838869 TTTATCAAAT
70838879 TTATATTGATTGAAA
1 TTATATTGATTGAAA
* * *
70838894 TCATTTTGATTGAAT
1 TTATATTGATTGAAA
70838909 TTATATTGATTGAAA
1 TTATATTGATTGAAA
70838924 TTATA
1 TTATA
70838929 ATATATATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.36, C:0.02, G:0.12, T:0.50
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:70839585 original size:18 final size:19
Alignment explanation
Indices: 70839564--70839604 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
70839554 AATGAAATGA
70839564 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
70839582 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
70839601 GAAA
1 GAAA
70839605 ATATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:70840711 original size:31 final size:31
Alignment explanation
Indices: 70840673--70840736 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
70840663 CCTTTTCATA
70840673 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
70840704 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
70840735 TT
1 TT
70840737 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:70840981 original size:24 final size:24
Alignment explanation
Indices: 70840930--70841047 Score: 170
Period size: 23 Copynumber: 5.0 Consensus size: 24
70840920 GCTTTATCAT
*
70840930 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
70840955 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
70840979 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
70841002 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
70841025 ATAACTGGGGCGTAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
70841048 TCACTTCCTT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
23 45 0.52
24 30 0.34
25 12 0.14
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:70841122 original size:20 final size:20
Alignment explanation
Indices: 70841097--70841163 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
70841087 TTATGATTAC
70841097 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
70841117 ATCATGTACATATCATACAT
1 ATCATGTGCATATCATACAT
* *
70841137 TTCATGTGCATACCATACAT
1 ATCATGTGCATATCATACAT
*
70841157 ACCATGT
1 ATCATGT
70841164 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:70848826 original size:32 final size:32
Alignment explanation
Indices: 70848785--70848849 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
70848775 CCTTTTCATA
70848785 TTTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTTCATATTTCATAACACTGGGCCGAAGCCTT
**
70848817 TTTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTTCATATTTCATAACACTGGGCCGAAGCCTT
70848849 T
1 T
70848850 ACTGTAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (32 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:70849093 original size:24 final size:24
Alignment explanation
Indices: 70849057--70849160 Score: 167
Period size: 23 Copynumber: 4.4 Consensus size: 24
70849047 TTGGAGGACT
*
70849057 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
70849082 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
70849106 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
70849129 AGCCC-TTTAATAACTGGGGCGTA
1 AGCCCTTTTAATAACTGGGGCATA
70849152 AGCCCTTTT
1 AGCCCTTTT
70849161 TCACTTCCTC
Statistics
Matches: 76, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
23 45 0.59
24 27 0.36
25 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:70849305 original size:25 final size:25
Alignment explanation
Indices: 70849273--70849320 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70849263 ATACATAAAC
* *
70849273 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
*
70849298 CCTAGGGGCAAAATGGTTATTTT
1 CCTAGGGGCAAAATGGTCATTTT
70849321 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:70854011 original size:52 final size:51
Alignment explanation
Indices: 70853940--70854148 Score: 293
Period size: 52 Copynumber: 4.1 Consensus size: 51
70853930 ATCAAGTGAC
*
70853940 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGT-G
* *
70853992 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* *
70854043 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-----
1 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
*
70854090 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-AAGTG
70854142 ATAAGTG
1 A-AAGTG
70854149 GCTACACTTA
Statistics
Matches: 143, Mismatches: 6, Indels: 15
0.87 0.04 0.09
Matches are distributed among these distances:
46 43 0.30
51 1 0.01
52 94 0.66
53 5 0.03
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.27
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
Found at i:70854116 original size:98 final size:99
Alignment explanation
Indices: 70853932--70854148 Score: 301
Period size: 98 Copynumber: 2.1 Consensus size: 99
70853922 TACTTCTGAT
*
70853932 CAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGT
1 CAAGTGA-AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-----GAAAGT
* *
70853997 GATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
60 GATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGA
* *
70854037 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-AAAGTGATAAG
1 CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAGTGATAAG
*
70854101 TGATAGCTTTAGCTACACTTATCTGATCAAGAGA
66 TGATAGCTTCAGCTACACTTATCTGATCAAGAGA
*
70854135 CAAAGTGATAAGTG
1 C-AAGTGAAAAGTG
70854149 GCTACACTTA
Statistics
Matches: 104, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
98 43 0.41
99 11 0.11
104 43 0.41
105 7 0.07
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.27
Consensus pattern (99 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAGTGATAAG
TGATAGCTTCAGCTACACTTATCTGATCAAGAGA
Found at i:70854121 original size:46 final size:46
Alignment explanation
Indices: 70854044--70854148 Score: 183
Period size: 46 Copynumber: 2.3 Consensus size: 46
70854034 TGACAAGTGA
* *
70854044 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC
*
70854090 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC
70854136 AAAGTGATAAGTG
1 AAAGTGATAAGTG
70854149 GCTACACTTA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 56 1.00
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC
Found at i:70854156 original size:37 final size:37
Alignment explanation
Indices: 70854112--70854220 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
70854102 GATAGCTTTA
70854112 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
70854149 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
70854186 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
70854221 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:70858704 original size:15 final size:15
Alignment explanation
Indices: 70858684--70858712 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
70858674 GAAATAAAGG
70858684 AAAGAAACAGAATGA
1 AAAGAAACAGAATGA
70858699 AAAGAAACAGAATG
1 AAAGAAACAGAATG
70858713 TGGAAACGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.07, G:0.21, T:0.07
Consensus pattern (15 bp):
AAAGAAACAGAATGA
Found at i:70858723 original size:18 final size:15
Alignment explanation
Indices: 70858682--70858727 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
70858672 AGGAAATAAA
70858682 GGAAAGAAACAGAAT
1 GGAAAGAAACAGAAT
*
70858697 GAAAAGAAACAGAATGT
1 GGAAAGAAACAGAA--T
70858714 GGAAACGAAACAGA
1 GGAAA-GAAACAGA
70858728 GAAGAAACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 13 0.50
17 5 0.19
18 8 0.31
ACGTcount: A:0.59, C:0.09, G:0.26, T:0.07
Consensus pattern (15 bp):
GGAAAGAAACAGAAT
Found at i:70859145 original size:23 final size:21
Alignment explanation
Indices: 70859098--70859138 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
70859088 TTTGGTTAAA
70859098 AATTGAATAGAAATGAAGTATG
1 AATTGAATAGAAA-GAAGTATG
70859120 AATTGAGATAGAAA-AAGTA
1 AATTGA-ATAGAAAGAAGTA
70859139 AGTGAATCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 6 0.33
23 7 0.39
ACGTcount: A:0.54, C:0.00, G:0.22, T:0.24
Consensus pattern (21 bp):
AATTGAATAGAAAGAAGTATG
Found at i:70859516 original size:15 final size:15
Alignment explanation
Indices: 70859468--70859517 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
70859458 TTTATCAAAT
70859468 TTATATTGATTGAAA
1 TTATATTGATTGAAA
* *
70859483 TCATTTTGATT-AAA
1 TTATATTGATTGAAA
70859497 TTTATATTGATTGAAA
1 -TTATATTGATTGAAA
70859513 TTATA
1 TTATA
70859518 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 3 0.10
15 23 0.79
16 3 0.10
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:70859746 original size:18 final size:18
Alignment explanation
Indices: 70859723--70859761 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
70859713 GTTGAATTGA
*
70859723 ATGAAAATGTATGAAATT
1 ATGAAAATGTATGAAAAT
*
70859741 ATGAAAATGTGTGAAAAT
1 ATGAAAATGTATGAAAAT
70859759 ATG
1 ATG
70859762 TGATTATTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.21, T:0.31
Consensus pattern (18 bp):
ATGAAAATGTATGAAAAT
Found at i:70860000 original size:27 final size:27
Alignment explanation
Indices: 70859962--70860037 Score: 93
Period size: 27 Copynumber: 2.7 Consensus size: 27
70859952 TTTAATGCCT
70859962 TATTGGTGTGTTTGGGAGGATATGAT-A
1 TATTGGTGTGTTTGGGAGGAT-TGATAA
*
70859989 TATTGGTGTGTTT-GGAGGATTTATAA
1 TATTGGTGTGTTTGGGAGGATTGATAA
70860015 TATTCCGGGTGTGTTTGGGAGGA
1 TATT---GGTGTGTTTGGGAGGA
70860038 ATCCACGTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
25 3 0.07
26 12 0.28
27 13 0.30
29 9 0.21
30 6 0.14
ACGTcount: A:0.20, C:0.03, G:0.37, T:0.41
Consensus pattern (27 bp):
TATTGGTGTGTTTGGGAGGATTGATAA
Found at i:70862108 original size:18 final size:18
Alignment explanation
Indices: 70862081--70862122 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
70862071 GCTCTTAAAC
*
70862081 TTGGCAAGTAAGTTCACA
1 TTGGCCAGTAAGTTCACA
70862099 TTGGCCAGTAAGTTCACA
1 TTGGCCAGTAAGTTCACA
70862117 TTGGCC
1 TTGGCC
70862123 TATGAACTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (18 bp):
TTGGCCAGTAAGTTCACA
Found at i:70862278 original size:109 final size:109
Alignment explanation
Indices: 70862139--70862335 Score: 268
Period size: 109 Copynumber: 1.8 Consensus size: 109
70862129 CTTATTTTTA
* * * * *
70862139 TCCATTTTGACTCCTTAACTTGAAAATTGTTATTCTTTTAAGCCCAATCTGTTAATGACCCAAAA
1 TCCACTTTGACTCATTAACTTGAAAATTGTTATTCATTTAAACCCAATCTATTAATGACCCAAAA
70862204 AAAAATAGGGATAATGTAACTTTTTCCCCTCGAACTTTTTTGGG
66 AAAAATAGGGATAATGTAACTTTTTCCCCTCGAACTTTTTTGGG
* * * * *****
70862248 TCCACTTTGACTTATTAACTTGAAATTTGTTATTCATTTAAACCCATTCTATTAGTGATTGTGAA
1 TCCACTTTGACTCATTAACTTGAAAATTGTTATTCATTTAAACCCAATCTATTAATGACCCAAAA
70862313 AAAAATAGGGATAATGTAACTTT
66 AAAAATAGGGATAATGTAACTTT
70862336 CGCCCCTTGA
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
109 74 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (109 bp):
TCCACTTTGACTCATTAACTTGAAAATTGTTATTCATTTAAACCCAATCTATTAATGACCCAAAA
AAAAATAGGGATAATGTAACTTTTTCCCCTCGAACTTTTTTGGG
Found at i:70862486 original size:32 final size:31
Alignment explanation
Indices: 70862339--70862475 Score: 168
Period size: 31 Copynumber: 4.4 Consensus size: 31
70862329 TAACTTTCGC
** *
70862339 CCCTTGAACTCGGCAAATAGGTCCACATTGG
1 CCCTTGAACTTAGCAAGTAGGTCCACATTGG
*
70862370 CCCCTGAACTTAGCAAGTAGGTCTCACATTGG
1 CCCTTGAACTTAGCAAGTAGGTC-CACATTGG
70862402 CCCTTGAACTTAGCAAGTAGGTCCACATTGG
1 CCCTTGAACTTAGCAAGTAGGTCCACATTGG
* ** *
70862433 -CCTCTAAACTTAATAAGTAGGTCCACATTAG
1 CCCT-TGAACTTAGCAAGTAGGTCCACATTGG
70862464 CCCATTGAACTT
1 CCC-TTGAACTT
70862476 GATAAGTAGG
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
30 3 0.03
31 50 0.54
32 38 0.41
33 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (31 bp):
CCCTTGAACTTAGCAAGTAGGTCCACATTGG
Found at i:70862486 original size:63 final size:63
Alignment explanation
Indices: 70862339--70862475 Score: 186
Period size: 63 Copynumber: 2.2 Consensus size: 63
70862329 TAACTTTCGC
** * * * *
70862339 CCCTTGAACTCGGCAAATAGGTCCACATTGGCCCCTGAACTTAGCAAGTAGGTCTCACATTGG
1 CCCTTGAACTTAGCAAGTAGGTCCACATTGGCCCCTAAACTTAACAAGTAGGTCTCACATTAG
* *
70862402 CCCTTGAACTTAGCAAGTAGGTCCACATTGGCCTCTAAACTTAATAAGTAGGTC-CACATTAG
1 CCCTTGAACTTAGCAAGTAGGTCCACATTGGCCCCTAAACTTAACAAGTAGGTCTCACATTAG
70862464 CCCATTGAACTT
1 CCC-TTGAACTT
70862476 GATAAGTAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
62 10 0.15
63 55 0.85
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (63 bp):
CCCTTGAACTTAGCAAGTAGGTCCACATTGGCCCCTAAACTTAACAAGTAGGTCTCACATTAG
Found at i:70872379 original size:12 final size:12
Alignment explanation
Indices: 70872362--70872387 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
70872352 TAAGATCGCT
70872362 TTACTTTTTTAA
1 TTACTTTTTTAA
70872374 TTACTTTTTTAA
1 TTACTTTTTTAA
70872386 TT
1 TT
70872388 TATATAGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (12 bp):
TTACTTTTTTAA
Found at i:70872721 original size:12 final size:12
Alignment explanation
Indices: 70872704--70872729 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
70872694 TAAGATCGCT
70872704 TTACTTTTTTAA
1 TTACTTTTTTAA
70872716 TTACTTTTTTAA
1 TTACTTTTTTAA
70872728 TT
1 TT
70872730 TATATAGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (12 bp):
TTACTTTTTTAA
Found at i:70872846 original size:342 final size:342
Alignment explanation
Indices: 70872221--70872905 Score: 1325
Period size: 342 Copynumber: 2.0 Consensus size: 342
70872211 AGTGGTATAA
70872221 TTTCAGTTTTAGTCCTTAGAAGAACGGTTTGGACTATGTATAAACTAAATATGAAACGAAGACCT
1 TTTCAGTTTTAGTCCTTAGAAGAACGGTTTGGACTATGTATAAACTAAATATGAAACGAAGACCT
70872286 TAAGGCATTCCAAAACAGTACACGTGTCCTGCTTTTTACATTATAAAATAATGGTTTAATTGCAA
66 TAAGGCATTCCAAAACAGTACACGTGTCCTGCTTTTTACATTATAAAATAATGGTTTAATTGCAA
70872351 CTAAGATCGCTTTACTTTTTTAATTACTTTTTTAATTTATATAGGGTTAAATTTTAGTTTTAATC
131 CTAAGATCGCTTTACTTTTTTAATTACTTTTTTAATTTATATAGGGTTAAATTTTAGTTTTAATC
* *
70872416 TCTTTATAACGTTTAATTTTGAGATTTAATCTTTATATTTAATTTTTGACATGATTTGGTACCTT
196 TCTTTATAACGCTCAATTTTGAGATTTAATCTTTATATTTAATTTTTGACATGATTTGGTACCTT
70872481 GGGGGACAAGTGTTTTGTTATTTCTCTCTCCATTATAAGATGAGGGTGCAATTTCAATTTTGATC
261 GGGGGACAAGTGTTTTGTTATTTCTCTCTCCATTATAAGATGAGGGTGCAATTTCAATTTTGATC
70872546 TCTTTCCCATTTTTAGT
326 TCTTTCCCATTTTTAGT
*
70872563 TTTCAGTTTTAGTCGTTAGAAGAACGGTTTGGACTATGTATAAACTAAATATGAAACGAAGACCT
1 TTTCAGTTTTAGTCCTTAGAAGAACGGTTTGGACTATGTATAAACTAAATATGAAACGAAGACCT
*
70872628 TAAGGCATTCCAACACAGTACACGTGTCCTGCTTTTTACATTATAAAATAATGGTTTAATTGCAA
66 TAAGGCATTCCAAAACAGTACACGTGTCCTGCTTTTTACATTATAAAATAATGGTTTAATTGCAA
70872693 CTAAGATCGCTTTACTTTTTTAATTACTTTTTTAATTTATATAGGGTTAAATTTTAGTTTTAATC
131 CTAAGATCGCTTTACTTTTTTAATTACTTTTTTAATTTATATAGGGTTAAATTTTAGTTTTAATC
*
70872758 TCTTTATAACGCTCAATTTTGAGATTTAATCTTTATATTTAATTTTTGACATGATTTGGTATCTT
196 TCTTTATAACGCTCAATTTTGAGATTTAATCTTTATATTTAATTTTTGACATGATTTGGTACCTT
70872823 GGGGGACAAGTGTTTTGTTATTTCTCTCTCCATTATAAGATGAGGGTGCAATTTCAATTTTGATC
261 GGGGGACAAGTGTTTTGTTATTTCTCTCTCCATTATAAGATGAGGGTGCAATTTCAATTTTGATC
70872888 TCTTTCCCATTTTTAGT
326 TCTTTCCCATTTTTAGT
70872905 T
1 T
70872906 ATAAAATAAT
Statistics
Matches: 338, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
342 338 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (342 bp):
TTTCAGTTTTAGTCCTTAGAAGAACGGTTTGGACTATGTATAAACTAAATATGAAACGAAGACCT
TAAGGCATTCCAAAACAGTACACGTGTCCTGCTTTTTACATTATAAAATAATGGTTTAATTGCAA
CTAAGATCGCTTTACTTTTTTAATTACTTTTTTAATTTATATAGGGTTAAATTTTAGTTTTAATC
TCTTTATAACGCTCAATTTTGAGATTTAATCTTTATATTTAATTTTTGACATGATTTGGTACCTT
GGGGGACAAGTGTTTTGTTATTTCTCTCTCCATTATAAGATGAGGGTGCAATTTCAATTTTGATC
TCTTTCCCATTTTTAGT
Found at i:70881692 original size:20 final size:20
Alignment explanation
Indices: 70881655--70881695 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
70881645 ATATTTTTAG
*
70881655 AAAGATTAATTATTATAAAA
1 AAAGATTAATTATGATAAAA
70881675 AAAGTATTAA-TATGATAAAA
1 AAAG-ATTAATTATGATAAAA
70881695 A
1 A
70881696 TAATTTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (20 bp):
AAAGATTAATTATGATAAAA
Found at i:70881926 original size:32 final size:32
Alignment explanation
Indices: 70881885--70881948 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
70881875 TTTATCATTA
70881885 TTTGTTAGTCTTTGATCAAGTTAATTTGAAAT
1 TTTGTTAGTCTTTGATCAAGTTAATTTGAAAT
70881917 TTTGTTAGTCTTTGATCAAGTTAATTTGAAAT
1 TTTGTTAGTCTTTGATCAAGTTAATTTGAAAT
70881949 GAATTTACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.06, G:0.16, T:0.50
Consensus pattern (32 bp):
TTTGTTAGTCTTTGATCAAGTTAATTTGAAAT
Found at i:70883938 original size:22 final size:21
Alignment explanation
Indices: 70883906--70883952 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
70883896 CATGGTGTCT
*
70883906 TTAAAATAATAAAATTTTAAA
1 TTAAAATAATAAAATTATAAA
*
70883927 TTAATAATAATAAAATTATAAT
1 TTAA-AATAATAAAATTATAAA
70883949 TTAA
1 TTAA
70883953 GCGATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TTAAAATAATAAAATTATAAA
Found at i:70884066 original size:5 final size:5
Alignment explanation
Indices: 70884056--70884080 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
70884046 AATTTTTAAA
70884056 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
70884081 TTATAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:70890952 original size:18 final size:18
Alignment explanation
Indices: 70890912--70890954 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
70890902 GTTAAAGGCA
70890912 TAATTAATTTAAAATTTT
1 TAATTAATTTAAAATTTT
* *
70890930 CAATTAA-TTAAATTTATT
1 TAATTAATTTAAAATT-TT
70890948 TAATTAA
1 TAATTAA
70890955 AAACCTATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATTAATTTAAAATTTT
Found at i:70894712 original size:25 final size:25
Alignment explanation
Indices: 70894661--70894712 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
70894651 AAAATGTTAG
* **
70894661 GTCAAATTCTACTATTAATTCTGTA
1 GTCAAAGTCTACTATTAATTCCATA
70894686 GTCAAAGTCTACTATTAATTCCATA
1 GTCAAAGTCTACTATTAATTCCATA
70894711 GT
1 GT
70894713 ATATGTAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (25 bp):
GTCAAAGTCTACTATTAATTCCATA
Found at i:70903912 original size:9 final size:9
Alignment explanation
Indices: 70903898--70903922 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
70903888 TTTATTTCAA
70903898 TTAATTAAG
1 TTAATTAAG
70903907 TTAATTAAG
1 TTAATTAAG
70903916 TTAATTA
1 TTAATTA
70903923 TTTAATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (9 bp):
TTAATTAAG
Found at i:70904663 original size:36 final size:36
Alignment explanation
Indices: 70904609--70904686 Score: 129
Period size: 36 Copynumber: 2.2 Consensus size: 36
70904599 GAAAAGCTCC
70904609 GATAAGAAATAGGAGAGAGAGACTGGAGAAGTAAGA
1 GATAAGAAATAGGAGAGAGAGACTGGAGAAGTAAGA
* * *
70904645 GATAAGAACTAGGGGAGAGAGATTGGAGAAGTAAGA
1 GATAAGAAATAGGAGAGAGAGACTGGAGAAGTAAGA
70904681 GATAAG
1 GATAAG
70904687 GCAGTGACTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.47, C:0.03, G:0.37, T:0.13
Consensus pattern (36 bp):
GATAAGAAATAGGAGAGAGAGACTGGAGAAGTAAGA
Found at i:70916480 original size:21 final size:23
Alignment explanation
Indices: 70916452--70916507 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
70916442 AAAAAATAGT
* *
70916452 TACT-TATTTAAA-TTTTATATT
1 TACTATATTAAAATTTTTATATA
70916473 TA-TATATTAAAATTTTTATATA
1 TACTATATTAAAATTTTTATATA
70916495 TACTATATTAAAA
1 TACTATATTAAAA
70916508 AACTTCGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 1 0.03
21 9 0.30
22 10 0.33
23 10 0.33
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (23 bp):
TACTATATTAAAATTTTTATATA
Found at i:70918435 original size:47 final size:47
Alignment explanation
Indices: 70918384--70918545 Score: 191
Period size: 47 Copynumber: 3.4 Consensus size: 47
70918374 TGGTTGGACC
* * * * *
70918384 ATGGCAACA-TGTGATCTGTGATTTCAGAATAAGACCATAGCTGGGTT
1 ATGGCATCAGTGTGATATGTG-CTTCAGAATAAGACCATATCTGGGAT
* * * *
70918431 ATGGCATCGGTGTGATATGAGCTTCCGTATAAGACCATATCTGGGAT
1 ATGGCATCAGTGTGATATGTGCTTCAGAATAAGACCATATCTGGGAT
* * * *
70918478 ATGGCGTCAGTATGATATGTGCTTCTGAATAAAACCATATCTGGGAT
1 ATGGCATCAGTGTGATATGTGCTTCAGAATAAGACCATATCTGGGAT
70918525 ATGGCATCAGTGTGATATGTG
1 ATGGCATCAGTGTGATATGTG
70918546 ATCCGTGTAA
Statistics
Matches: 96, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
47 87 0.91
48 9 0.09
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.31
Consensus pattern (47 bp):
ATGGCATCAGTGTGATATGTGCTTCAGAATAAGACCATATCTGGGAT
Found at i:70923650 original size:18 final size:18
Alignment explanation
Indices: 70923610--70923652 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
70923600 TTTTTTTTCT
70923610 TTTAATAAATAACTACCCA
1 TTTAA-AAATAACTACCCA
* *
70923629 -TTAAAAATAATTACTCA
1 TTTAAAAATAACTACCCA
70923646 TTTAAAA
1 TTTAAAA
70923653 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (18 bp):
TTTAAAAATAACTACCCA
Found at i:70925804 original size:29 final size:29
Alignment explanation
Indices: 70925742--70925811 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 29
70925732 ATTGAGTTAT
*
70925742 AAAATTTAATTAAAAATCAAAGTTAGTGGT-
1 AAAATTTAA-TAAAAATCAAAGTTAAT-GTA
*
70925772 AAAATTTAATAAAATTCAAAGTTTAAT-TAA
1 AAAATTTAATAAAAATCAAAG-TTAATGT-A
70925802 AAAATTTAAT
1 AAAATTTAAT
70925812 CACATAAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 1 0.03
29 11 0.31
30 23 0.66
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (29 bp):
AAAATTTAATAAAAATCAAAGTTAATGTA
Done.