Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 230 of 250
Found at i:70926227 original size:17 final size:19
Alignment explanation
Indices: 70926200--70926239 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
70926190 TTTATTGAAC
70926200 TTTTAATTGTTATA-ATTT
1 TTTTAATTGTTATAGATTT
*
70926218 TTTTAA-TGTTTTAGATTT
1 TTTTAATTGTTATAGATTT
70926236 TTTT
1 TTTT
70926240 TATGATTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (19 bp):
TTTTAATTGTTATAGATTT
Found at i:70935545 original size:19 final size:19
Alignment explanation
Indices: 70935514--70935568 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 19
70935504 TAAAAGTATT
*
70935514 CAAAAA-TAAAAAAAAACC
1 CAAAAATTATAAAAAAACC
**
70935532 CAAAAATTAT-AAAAAGTC
1 CAAAAATTATAAAAAAACC
70935550 CATAAAATTCATAAAAAAA
1 CA-AAAATT-ATAAAAAAA
70935569 TAGCATGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
18 14 0.48
19 8 0.28
20 2 0.07
21 5 0.17
ACGTcount: A:0.69, C:0.13, G:0.02, T:0.16
Consensus pattern (19 bp):
CAAAAATTATAAAAAAACC
Found at i:70938714 original size:22 final size:23
Alignment explanation
Indices: 70938668--70938716 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
70938658 AATATTTTTG
** *
70938668 TAAATATAAATTAAATTCAATGA
1 TAAATATAAATTAAAGACAAGGA
70938691 TAAAT-TAAATTAAAGACAAGGA
1 TAAATATAAATTAAAGACAAGGA
70938713 TAAA
1 TAAA
70938717 ATTTTAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.29
Consensus pattern (23 bp):
TAAATATAAATTAAAGACAAGGA
Found at i:70945854 original size:12 final size:11
Alignment explanation
Indices: 70945837--70945863 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
70945827 GTGAAATTTG
70945837 AAAAAAAAAAC
1 AAAAAAAAAAC
70945848 AAAAAAAAAAC
1 AAAAAAAAAAC
70945859 AAAAA
1 AAAAA
70945864 TCAATGTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:70950149 original size:24 final size:24
Alignment explanation
Indices: 70950119--70950164 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
70950109 ACATTTGGTC
*
70950119 TAAAGTTGGGCCG-TCGGTTTTGAT
1 TAAAGTTGGACCGCT-GGTTTTGAT
70950143 TAAAGTTGGACCGCTGGTTTTG
1 TAAAGTTGGACCGCTGGTTTTG
70950165 GTCCATCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.17, C:0.13, G:0.33, T:0.37
Consensus pattern (24 bp):
TAAAGTTGGACCGCTGGTTTTGAT
Found at i:70950736 original size:20 final size:19
Alignment explanation
Indices: 70950678--70950744 Score: 61
Period size: 20 Copynumber: 3.6 Consensus size: 19
70950668 GGTAAAAGAA
70950678 TTATAAAAAATA--AAAAT
1 TTATAAAAAATATTAAAAT
* * *
70950695 TCT-TAAAAATTATTCAATT
1 T-TATAAAAAATATTAAAAT
70950714 TTAGTAAAAAATATTAAAAT
1 TTA-TAAAAAATATTAAAAT
70950734 TTA-AAAAAATA
1 TTATAAAAAATA
70950745 GAAAAAATCG
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
17 9 0.23
18 10 0.26
19 4 0.10
20 16 0.41
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (19 bp):
TTATAAAAAATATTAAAAT
Found at i:70952335 original size:47 final size:47
Alignment explanation
Indices: 70952178--70952310 Score: 230
Period size: 47 Copynumber: 2.8 Consensus size: 47
70952168 CCGGGATAAG
* * *
70952178 CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACATTATAGTA
1 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
*
70952225 CACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACATTATAGTA
1 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
70952272 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACA
1 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACA
70952311 GTAGTTGACA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 81 1.00
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.25
Consensus pattern (47 bp):
CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
Found at i:70953186 original size:42 final size:43
Alignment explanation
Indices: 70953090--70953186 Score: 137
Period size: 42 Copynumber: 2.3 Consensus size: 43
70953080 CTTTTTTATT
* * * *
70953090 TCTTTCT-TTCCTTCTTTCTTTCTCACGTTTGCTCTCTGTTAG
1 TCTTTCTATTCTTTCTTTATTTCTCACGTTTGCTCTCTGTAAC
70953132 TCTTTCTA-TCTTTCTTTATTTCTCACGTTTGCTCTCTGTAAC
1 TCTTTCTATTCTTTCTTTATTTCTCACGTTTGCTCTCTGTAAC
70953174 T-TTTCTATTCTTT
1 TCTTTCTATTCTTT
70953187 ACTTATTATT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
41 6 0.12
42 43 0.88
ACGTcount: A:0.08, C:0.26, G:0.07, T:0.59
Consensus pattern (43 bp):
TCTTTCTATTCTTTCTTTATTTCTCACGTTTGCTCTCTGTAAC
Found at i:70955092 original size:17 final size:18
Alignment explanation
Indices: 70955072--70955108 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
70955062 TATACTAGAT
70955072 TTTTTTTTAATAAT-TAA
1 TTTTTTTTAATAATATAA
*
70955089 TTTTTTTTACTAATATAA
1 TTTTTTTTAATAATATAA
70955107 TT
1 TT
70955109 GGTTGACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTTTTTAATAATATAA
Found at i:70956184 original size:65 final size:65
Alignment explanation
Indices: 70956080--70956210 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
70956070 TGTAAAGACC
70956080 TCTATGGTATTTTTACCTACAACTTTTAACATTTTGAAGCAGTTAGACTTAAACGATGCAACGCT
1 TCTATGGTATTTTTACCTACAACTTTTAACATTTTGAAGCAGTTAGACTTAAACGATGCAACGCT
70956145 TCTATGGTATTTTTACCTACAACTTTTAACATTTTGAAGCAGTTAGACTTAAACGATGCAACGCT
1 TCTATGGTATTTTTACCTACAACTTTTAACATTTTGAAGCAGTTAGACTTAAACGATGCAACGCT
70956210 T
1 T
70956211 ACTTGATTAG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (65 bp):
TCTATGGTATTTTTACCTACAACTTTTAACATTTTGAAGCAGTTAGACTTAAACGATGCAACGCT
Found at i:70968083 original size:14 final size:14
Alignment explanation
Indices: 70968064--70968093 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70968054 TGTTCTAGTA
*
70968064 TTTTTATTTTTATT
1 TTTTTATATTTATT
70968078 TTTTTATATTTATT
1 TTTTTATATTTATT
70968092 TT
1 TT
70968094 ACAATTAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTATATTTATT
Found at i:70969538 original size:3 final size:3
Alignment explanation
Indices: 70969530--70969594 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
70969520 TATGTTCTCT
70969530 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
70969578 GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GA
70969595 TTATTGTGTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:70971227 original size:2 final size:2
Alignment explanation
Indices: 70971220--70971249 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
70971210 CATGTCATCA
70971220 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
70971250 CATATAAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:70975428 original size:34 final size:33
Alignment explanation
Indices: 70975311--70975431 Score: 89
Period size: 34 Copynumber: 3.5 Consensus size: 33
70975301 AAGTTCTAAA
* * *
70975311 TAATTTTAGATATAATATATATCTAATAATTTTT
1 TAATTTCAGAAATAATTTATATCTAAT-ATTTTT
* * ** *
70975345 TAAATTACAGAAATAAATTTTTAATTCTTTTTATTTGT
1 T-AATTTCAGAAAT-AATTTAT-A-TC-TAATATTTTT
* *
70975383 AAATTTTAGAAATAATTTATATCTAATACTTTTT
1 TAATTTCAGAAATAATTTATATCTAATA-TTTTT
70975417 TAATTTCAGAAATAA
1 TAATTTCAGAAATAA
70975432 ATTCTTTAAT
Statistics
Matches: 64, Mismatches: 17, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
33 3 0.05
34 20 0.31
35 10 0.16
36 11 0.17
37 11 0.17
38 7 0.11
39 2 0.03
ACGTcount: A:0.41, C:0.05, G:0.04, T:0.50
Consensus pattern (33 bp):
TAATTTCAGAAATAATTTATATCTAATATTTTT
Found at i:70975452 original size:34 final size:32
Alignment explanation
Indices: 70975334--70975454 Score: 82
Period size: 34 Copynumber: 3.5 Consensus size: 32
70975324 AATATATATC
* *
70975334 TAATAATTTTTTAAATTACAGAAATAAATTTT
1 TAATAATTTTTTTAATTTCAGAAATAAATTTT
** * *
70975366 TAATTCTTTTTATTTGTAAATTTTAGAAATAATTTATAT
1 TAA-T-AATTT-TTT-T-AATTTCAGAAATAAATT-T-T
*
70975405 CTAAT-ACTTTTTTAATTTCAGAAATAAATTCTT
1 -TAATAATTTTTTTAATTTCAGAAATAAATT-TT
70975438 TAATAATTTATTTTAAT
1 TAATAATTT-TTTTAAT
70975455 ACTTAAATAA
Statistics
Matches: 67, Mismatches: 12, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
32 7 0.10
33 5 0.07
34 26 0.39
35 4 0.06
36 3 0.04
37 16 0.24
38 1 0.01
39 2 0.03
40 3 0.04
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (32 bp):
TAATAATTTTTTTAATTTCAGAAATAAATTTT
Found at i:70976478 original size:23 final size:22
Alignment explanation
Indices: 70976439--70976484 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
70976429 TATTCAACTT
* *
70976439 TATTAGATAACTTTTATCTAAC
1 TATTAGATAAATATTATCTAAC
70976461 TATTAAGATAAATATTATCTAAC
1 TATT-AGATAAATATTATCTAAC
70976484 T
1 T
70976485 TTGTTTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.41, C:0.11, G:0.04, T:0.43
Consensus pattern (22 bp):
TATTAGATAAATATTATCTAAC
Found at i:70977624 original size:15 final size:16
Alignment explanation
Indices: 70977606--70977643 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
70977596 CCTTATTCGG
70977606 TTTTTTT-TTCTT-TT
1 TTTTTTTCTTCTTCTT
70977620 TTTTTTTCTTCTTCTT
1 TTTTTTTCTTCTTCTT
*
70977636 TTCTTTTC
1 TTTTTTTC
70977644 CCAACAAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 7 0.33
15 5 0.24
16 9 0.43
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTTTCTTCTTCTT
Found at i:70979329 original size:18 final size:18
Alignment explanation
Indices: 70979308--70979345 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
70979298 TTTTTATTCG
*
70979308 AATTAATTCAAATAACTT
1 AATTAACTCAAATAACTT
70979326 AATTAACTCAAATAACTT
1 AATTAACTCAAATAACTT
70979344 AA
1 AA
70979346 ACTATTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (18 bp):
AATTAACTCAAATAACTT
Found at i:70979830 original size:21 final size:22
Alignment explanation
Indices: 70979804--70979848 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
70979794 TAGAAAGATA
70979804 AAAAAT-AATTTTAAATT-AAAT
1 AAAAATAAATTTT-AATTCAAAT
70979825 AAAAATAAATTTTAATTCAAAT
1 AAAAATAAATTTTAATTCAAAT
70979847 AA
1 AA
70979849 TCGTAATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAAATAAATTTTAATTCAAAT
Found at i:70980345 original size:16 final size:17
Alignment explanation
Indices: 70980326--70980366 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
70980316 ATATAAATCC
*
70980326 ATTCAAATTC-AAATTA
1 ATTCAAATTCGAAATAA
70980342 ATTCAAATTCGAAATAA
1 ATTCAAATTCGAAATAA
70980359 ATT-AAATT
1 ATTCAAATT
70980367 GTGGTACATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.65
17 8 0.35
ACGTcount: A:0.51, C:0.10, G:0.02, T:0.37
Consensus pattern (17 bp):
ATTCAAATTCGAAATAA
Found at i:70984274 original size:2 final size:2
Alignment explanation
Indices: 70984267--70984315 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
70984257 CCAGATTTGT
70984267 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
70984309 TC TC TC T
1 TC TC TC T
70984316 TTCCAATCAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:70987164 original size:17 final size:18
Alignment explanation
Indices: 70987130--70987165 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
70987120 AACAAAACTT
70987130 TTTAAATTTCACTTATTA
1 TTTAAATTTCACTTATTA
*
70987148 TTTAAATTTTA-TTATTA
1 TTTAAATTTCACTTATTA
70987165 T
1 T
70987166 ACAAAATCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTAAATTTCACTTATTA
Found at i:70989922 original size:29 final size:30
Alignment explanation
Indices: 70989863--70989920 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
70989853 TCCGAGCCTT
*
70989863 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
70989893 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
70989921 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:70990150 original size:13 final size:13
Alignment explanation
Indices: 70990132--70990163 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
70990122 TTTCCAGCAA
70990132 TTATGAATTTATT
1 TTATGAATTTATT
70990145 TTATGAATTTATT
1 TTATGAATTTATT
*
70990158 TGATGA
1 TTATGA
70990164 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:70990371 original size:50 final size:50
Alignment explanation
Indices: 70990258--70990499 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
70990248 ATTTGGGTAA
* * *
70990258 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
70990314 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
70990364 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
70990414 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
70990464 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
70990500 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:70990447 original size:100 final size:103
Alignment explanation
Indices: 70990258--70990507 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
70990248 ATTTGGGTAA
70990258 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
70990323 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
70990364 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
70990426 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
70990464 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
70990508 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:70997514 original size:29 final size:30
Alignment explanation
Indices: 70997455--70997512 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
70997445 TCCGAGCCTT
*
70997455 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
70997485 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
70997513 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:70997742 original size:13 final size:13
Alignment explanation
Indices: 70997724--70997755 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
70997714 TTTCCAGCAA
70997724 TTATGAATTTATT
1 TTATGAATTTATT
70997737 TTATGAATTTATT
1 TTATGAATTTATT
*
70997750 TGATGA
1 TTATGA
70997756 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:70997963 original size:50 final size:50
Alignment explanation
Indices: 70997850--70998091 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
70997840 ATTTGGGTAA
* * *
70997850 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
70997906 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
70997956 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
70998006 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
70998056 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
70998092 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:70998039 original size:100 final size:103
Alignment explanation
Indices: 70997850--70998099 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
70997840 ATTTGGGTAA
70997850 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
70997915 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
70997956 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
70998018 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
70998056 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
70998100 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:71001607 original size:13 final size:13
Alignment explanation
Indices: 71001589--71001613 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71001579 AAGGGCAAAG
71001589 CTAGAATATTTTT
1 CTAGAATATTTTT
71001602 CTAGAATATTTT
1 CTAGAATATTTT
71001614 AGGGGAGCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (13 bp):
CTAGAATATTTTT
Found at i:71004259 original size:31 final size:29
Alignment explanation
Indices: 71004224--71004286 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 29
71004214 TTTAATTAAT
71004224 TTTTTAAAATTTAAAAAATATATAAAAATTA
1 TTTTTAAAATTT-AAAAAT-TATAAAAATTA
*
71004255 TTTTTAAAATTTAAAAATTATTAAAATTA
1 TTTTTAAAATTTAAAAATTATAAAAATTA
71004284 TTT
1 TTT
71004287 AAAACTTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 13 0.42
30 6 0.19
31 12 0.39
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TTTTTAAAATTTAAAAATTATAAAAATTA
Found at i:71004286 original size:20 final size:19
Alignment explanation
Indices: 71004263--71004300 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
71004253 TATTTTTAAA
71004263 ATTTAAAAATTATTAAAATT
1 ATTTAAAAATTA-TAAAATT
*
71004283 ATTTAAAACTTATAAAAT
1 ATTTAAAAATTATAAAAT
71004301 AATATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTTAAAAATTATAAAATT
Found at i:71004290 original size:51 final size:53
Alignment explanation
Indices: 71004232--71004332 Score: 129
Period size: 50 Copynumber: 1.9 Consensus size: 53
71004222 ATTTTTTAAA
*
71004232 ATTTAAAAAATATATAAAA-ATTATTTTTAA-A-ATTTAAAAATT-ATTAAAATT
1 ATTT-AAAAAT-TATAAAATAATATTTTTAATATATTTAAAAATTAATTAAAATT
* *
71004283 ATTTAAAACTTATAAAATAATATTTTTAATATTTTTAAAAATTAATTAAA
1 ATTTAAAAATTATAAAATAATATTTTTAATATATTTAAAAATTAATTAAA
71004333 TGTTATCGTG
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
49 7 0.16
50 15 0.35
51 5 0.12
52 10 0.23
53 6 0.14
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (53 bp):
ATTTAAAAATTATAAAATAATATTTTTAATATATTTAAAAATTAATTAAAATT
Found at i:71004298 original size:29 final size:29
Alignment explanation
Indices: 71004221--71004299 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 29
71004211 GCATTTAATT
*
71004221 AATTTTTTAAAATT-TAAAAAATATATAAA
1 AATTATTTAAAATTAT-AAAAATATATAAA
*
71004250 AATTATTTTTAAAATT-TAAAAAT-TATTAA
1 AATTA--TTTAAAATTATAAAAATATATAAA
71004279 AATTATTTAAAACTTATAAAA
1 AATTATTTAAAA-TTATAAAA
71004300 TAATATTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
27 7 0.16
28 2 0.05
29 19 0.43
30 6 0.14
31 10 0.23
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (29 bp):
AATTATTTAAAATTATAAAAATATATAAA
Found at i:71005256 original size:25 final size:25
Alignment explanation
Indices: 71005227--71005276 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
71005217 TTAAATTTGA
71005227 TTAATTCGGTTAA-TCGACCGATTTC
1 TTAATTCGGTTAACT-GACCGATTTC
71005252 TTAATTCGGTTAACTGACCGATTTC
1 TTAATTCGGTTAACTGACCGATTTC
71005277 GAATCGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (25 bp):
TTAATTCGGTTAACTGACCGATTTC
Found at i:71006308 original size:20 final size:18
Alignment explanation
Indices: 71006255--71006310 Score: 51
Period size: 20 Copynumber: 3.0 Consensus size: 18
71006245 AAACCTGTAA
*
71006255 ATTTTTTTGTTGTTTTTT
1 ATTTTCTTGTTGTTTTTT
* *
71006273 ACTTTCTT-TCTTTTTTTGCT
1 ATTTTCTTGT-TGTTTTT--T
71006293 ATTTTCTTGTTGTTTTTT
1 ATTTTCTTGTTGTTTTTT
71006311 CATGATTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 8
0.69 0.12 0.19
Matches are distributed among these distances:
17 1 0.03
18 13 0.45
20 14 0.48
21 1 0.03
ACGTcount: A:0.05, C:0.09, G:0.09, T:0.77
Consensus pattern (18 bp):
ATTTTCTTGTTGTTTTTT
Found at i:71007476 original size:19 final size:20
Alignment explanation
Indices: 71007435--71007481 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
71007425 TTAAACTAAC
* *
71007435 AAATAATTTAAAAAATATTA
1 AAATAATTTAAAAAAAATCA
71007455 AAAT-ATTTAAAAAAAATCA
1 AAATAATTTAAAAAAAATCA
*
71007474 AAAAAATT
1 AAATAATT
71007482 AAATAAAGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (20 bp):
AAATAATTTAAAAAAAATCA
Found at i:71014432 original size:18 final size:19
Alignment explanation
Indices: 71014409--71014444 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
71014399 ATTATTTATT
*
71014409 ATATAT-TATTTTAAATAC
1 ATATATGTATTCTAAATAC
71014427 ATATATGTATTCTAAATA
1 ATATATGTATTCTAAATA
71014445 AATTATTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (19 bp):
ATATATGTATTCTAAATAC
Found at i:71015808 original size:21 final size:21
Alignment explanation
Indices: 71015759--71015817 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
71015749 ATAATAAATC
*
71015759 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
71015779 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
71015801 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
71015818 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:71021738 original size:2 final size:2
Alignment explanation
Indices: 71021733--71021757 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
71021723 ATATATATAT
71021733 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
71021758 TAGCGTGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:71022890 original size:38 final size:38
Alignment explanation
Indices: 71022820--71022970 Score: 194
Period size: 38 Copynumber: 4.0 Consensus size: 38
71022810 TATCATGTAA
* ** * *
71022820 AATAGTAGACATGTTTAACATGTATTCAGTTCAATAGT
1 AATAGTAGACATGCTTAACATGTATTTGGTTCAACAGC
** *
71022858 AGCATTAGACATGCTTAACATGTATTTGGTTCAACAGC
1 AATAGTAGACATGCTTAACATGTATTTGGTTCAACAGC
* *
71022896 AATAGTAGACATGCTTAACATTTATTTGGTTCAACAAC
1 AATAGTAGACATGCTTAACATGTATTTGGTTCAACAGC
* *
71022934 AATAGTAGACATGCTTAACATGTATTTAGTTTAACAG
1 AATAGTAGACATGCTTAACATGTATTTGGTTCAACAG
71022971 TATCAGTAGG
Statistics
Matches: 96, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 96 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (38 bp):
AATAGTAGACATGCTTAACATGTATTTGGTTCAACAGC
Found at i:71024333 original size:123 final size:123
Alignment explanation
Indices: 71024114--71024361 Score: 496
Period size: 123 Copynumber: 2.0 Consensus size: 123
71024104 GGAAAAAAAG
71024114 TGGCTCAAACCTAAGGTCACTTAGGGGAAAAGTTAACTCTTAACCATTAGGCCTAAAACATATTT
1 TGGCTCAAACCTAAGGTCACTTAGGGGAAAAGTTAACTCTTAACCATTAGGCCTAAAACATATTT
71024179 ATTGTCTAGTTTATATTTCTAATCGCATATATTTGGTGTAGCTTTTATCCTAGATTGT
66 ATTGTCTAGTTTATATTTCTAATCGCATATATTTGGTGTAGCTTTTATCCTAGATTGT
71024237 TGGCTCAAACCTAAGGTCACTTAGGGGAAAAGTTAACTCTTAACCATTAGGCCTAAAACATATTT
1 TGGCTCAAACCTAAGGTCACTTAGGGGAAAAGTTAACTCTTAACCATTAGGCCTAAAACATATTT
71024302 ATTGTCTAGTTTATATTTCTAATCGCATATATTTGGTGTAGCTTTTATCCTAGATTGT
66 ATTGTCTAGTTTATATTTCTAATCGCATATATTTGGTGTAGCTTTTATCCTAGATTGT
71024360 TG
1 TG
71024362 AAAATTAAAA
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
123 125 1.00
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (123 bp):
TGGCTCAAACCTAAGGTCACTTAGGGGAAAAGTTAACTCTTAACCATTAGGCCTAAAACATATTT
ATTGTCTAGTTTATATTTCTAATCGCATATATTTGGTGTAGCTTTTATCCTAGATTGT
Found at i:71033753 original size:16 final size:16
Alignment explanation
Indices: 71033732--71033763 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
71033722 ACAATGTCAT
71033732 ATGCTTTACTATTTTA
1 ATGCTTTACTATTTTA
*
71033748 ATGCTTTATTATTTTA
1 ATGCTTTACTATTTTA
71033764 GTGGTTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.09, G:0.06, T:0.59
Consensus pattern (16 bp):
ATGCTTTACTATTTTA
Found at i:71047860 original size:25 final size:25
Alignment explanation
Indices: 71047826--71047876 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
71047816 AACACAGAAG
71047826 GATCTAGATTTGAGTACGTTGAAAT
1 GATCTAGATTTGAGTACGTTGAAAT
71047851 GATCTAGATTTGAGTACGTTGAAAT
1 GATCTAGATTTGAGTACGTTGAAAT
71047876 G
1 G
71047877 TATTATCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.35
Consensus pattern (25 bp):
GATCTAGATTTGAGTACGTTGAAAT
Found at i:71051046 original size:70 final size:70
Alignment explanation
Indices: 71050969--71051105 Score: 222
Period size: 70 Copynumber: 2.0 Consensus size: 70
71050959 TGGACTCAGA
*
71050969 TTCATGGTTCAAATAAGTCACTTACCTTTTAAGTACTAAATTGGAC-AAAAATCTAAATTCAGGT
1 TTCATGGTTCAAATAAGTCACTTACC-TTTAAGTACTAAATTGGACAAAAAATCTAAATTCAAGT
71051033 GTTAGG
65 GTTAGG
* * *
71051039 TTCATGGTTTAAATAAGTCATTTACCTTTAAGTACTAATTTGGACAAAAAATCTAAATTCAAGTG
1 TTCATGGTTCAAATAAGTCACTTACCTTTAAGTACTAAATTGGACAAAAAATCTAAATTCAAGTG
71051104 TT
66 TT
71051106 GATTTAAAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
69 18 0.29
70 44 0.71
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.36
Consensus pattern (70 bp):
TTCATGGTTCAAATAAGTCACTTACCTTTAAGTACTAAATTGGACAAAAAATCTAAATTCAAGTG
TTAGG
Found at i:71054413 original size:17 final size:17
Alignment explanation
Indices: 71054391--71054432 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
71054381 CATGGATAAT
71054391 GCCAGTGCTCTTCCCCC
1 GCCAGTGCTCTTCCCCC
71054408 GCCAGTGCTCTTCCCCC
1 GCCAGTGCTCTTCCCCC
71054425 GCCAGTGC
1 GCCAGTGC
71054433 CAGTGCTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.07, C:0.50, G:0.21, T:0.21
Consensus pattern (17 bp):
GCCAGTGCTCTTCCCCC
Found at i:71056192 original size:15 final size:17
Alignment explanation
Indices: 71056165--71056199 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
71056155 AATTTCAGTA
71056165 ATTATTGTTATTTC-TC
1 ATTATTGTTATTTCTTC
71056181 ATTATT-TTATTTCTTC
1 ATTATTGTTATTTCTTC
71056197 ATT
1 ATT
71056200 TATCTTATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.20, C:0.11, G:0.03, T:0.66
Consensus pattern (17 bp):
ATTATTGTTATTTCTTC
Found at i:71070877 original size:26 final size:24
Alignment explanation
Indices: 71070843--71070904 Score: 79
Period size: 26 Copynumber: 2.5 Consensus size: 24
71070833 AATTTTTGAA
71070843 ATTTTAAAATTGAAAAATTAAGAATT
1 ATTTTAAAATT-AAAAATT-AGAATT
*
71070869 ATTTTAAAAATTAAAAATTATAATT
1 ATTTT-AAAATTAAAAATTAGAATT
*
71070894 TTTTTAAAATT
1 ATTTTAAAATT
71070905 TAAGTAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 6 0.18
25 9 0.27
26 12 0.36
27 6 0.18
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (24 bp):
ATTTTAAAATTAAAAATTAGAATT
Found at i:71070884 original size:25 final size:25
Alignment explanation
Indices: 71070843--71070907 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
71070833 AATTTTTGAA
71070843 ATTTT-AAAATTGAAAAATTAAGAATT
1 ATTTTAAAAATT-AAAAATT-AGAATT
*
71070869 ATTTTAAAAATTAAAAATTATAATT
1 ATTTTAAAAATTAAAAATTAGAATT
* *
71070894 TTTTTAAAATTTAA
1 ATTTTAAAAATTAA
71070908 GTAATTATTG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
25 17 0.49
26 12 0.34
27 6 0.17
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (25 bp):
ATTTTAAAAATTAAAAATTAGAATT
Found at i:71072674 original size:32 final size:32
Alignment explanation
Indices: 71072637--71072713 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
71072627 ATGCATGTGT
* * **
71072637 GTAACTTTTCATCTTCAAGTCTCTTTGCATTA
1 GTAACTTTTCATATTCAAGCCTCTTCACATTA
* * *
71072669 TTAACTCTTCATATTCAAGCCTCTTCACATTC
1 GTAACTTTTCATATTCAAGCCTCTTCACATTA
71072701 GTAACTTTTCATA
1 GTAACTTTTCATA
71072714 ATTTATTTTG
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (32 bp):
GTAACTTTTCATATTCAAGCCTCTTCACATTA
Found at i:71084124 original size:13 final size:13
Alignment explanation
Indices: 71084106--71084132 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
71084096 CTAAATAGGG
71084106 TGAATTACACTCA
1 TGAATTACACTCA
71084119 TGAATTACACTCA
1 TGAATTACACTCA
71084132 T
1 T
71084133 CTTAATCATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (13 bp):
TGAATTACACTCA
Found at i:71098032 original size:46 final size:45
Alignment explanation
Indices: 71097982--71098157 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
71097972 TGGTTGAGCA
71097982 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
71098028 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
71098075 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
71098121 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71098158 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 69 0.63
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:71098138 original size:93 final size:93
Alignment explanation
Indices: 71097979--71098149 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
71097969 GGATGGTTGA
* * *
71097979 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
71098044 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
71098072 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
71098137 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
71098150 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:71108487 original size:5 final size:6
Alignment explanation
Indices: 71108472--71108496 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
71108462 TACTTTTTCA
71108472 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
71108497 TGTAGATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:71115018 original size:18 final size:19
Alignment explanation
Indices: 71114995--71115042 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
71114985 ATTTTAAAAA
71114995 TATAAATTTTGGA-ATTTT
1 TATAAATTTTGGATATTTT
* *
71115013 TATAAATATTTTGATTTTTT
1 TATAAAT-TTTGGATATTTT
*
71115033 TTTAAATTTT
1 TATAAATTTT
71115043 TGTTGAGAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 7 0.28
19 8 0.32
20 10 0.40
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (19 bp):
TATAAATTTTGGATATTTT
Found at i:71121195 original size:16 final size:17
Alignment explanation
Indices: 71121165--71121197 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
71121155 ATATAATTAA
*
71121165 AATATATTAATTTATTT
1 AATATATTAAATTATTT
71121182 AATA-ATTAAATTATTT
1 AATATATTAAATTATTT
71121198 GTACAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
AATATATTAAATTATTT
Found at i:71121562 original size:22 final size:22
Alignment explanation
Indices: 71121535--71121578 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
71121525 TTAACTTAAA
*
71121535 TTTAATACTTAATTACTTAATT
1 TTTAATACCTAATTACTTAATT
71121557 TTTAATACCTAATTACTTAATT
1 TTTAATACCTAATTACTTAATT
71121579 ATTGTGTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTAATACCTAATTACTTAATT
Found at i:71129779 original size:4 final size:4
Alignment explanation
Indices: 71129765--71129793 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
71129755 TTCAAGCAAT
71129765 ATTA A-TA ATTA ATTA ATTA ATTA ATTA AT
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA AT
71129794 AATAGATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:71130773 original size:16 final size:16
Alignment explanation
Indices: 71130752--71130782 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
71130742 TAGAAACACG
71130752 AATAGCTGTCCACCAA
1 AATAGCTGTCCACCAA
71130768 AATAGCTGTCCACCA
1 AATAGCTGTCCACCA
71130783 GAGCAGAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.32, G:0.13, T:0.19
Consensus pattern (16 bp):
AATAGCTGTCCACCAA
Found at i:71140601 original size:22 final size:22
Alignment explanation
Indices: 71140576--71140618 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
71140566 TGTCCCTATT
71140576 TTGCTACCATTTTATTATTATA
1 TTGCTACCATTTTATTATTATA
** *
71140598 TTGCTATTATTTTATTGTTAT
1 TTGCTACCATTTTATTATTAT
71140619 TGTTTAGATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.60
Consensus pattern (22 bp):
TTGCTACCATTTTATTATTATA
Found at i:71146368 original size:12 final size:12
Alignment explanation
Indices: 71146344--71146388 Score: 72
Period size: 12 Copynumber: 3.7 Consensus size: 12
71146334 ATAATAAGAG
71146344 AAGAAGAAAAAAA
1 AAGAAG-AAAAAA
71146357 AAGAAGAAAAAA
1 AAGAAGAAAAAA
71146369 AAGAAGAAAAAA
1 AAGAAGAAAAAA
*
71146381 AAGGAGAA
1 AAGAAGAA
71146389 GAGAAAAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 25 0.81
13 6 0.19
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (12 bp):
AAGAAGAAAAAA
Found at i:71146402 original size:16 final size:15
Alignment explanation
Indices: 71146345--71146403 Score: 65
Period size: 12 Copynumber: 4.2 Consensus size: 15
71146335 TAATAAGAGA
71146345 AGAAGAAAAAAAA--
1 AGAAGAAAAAAAAGG
71146358 AGAAG-AAAAAAA--
1 AGAAGAAAAAAAAGG
71146370 AGAAGAAAAAAAAGG
1 AGAAGAAAAAAAAGG
*
71146385 AGAAGAGAAAAAACGG
1 AGAAGA-AAAAAAAGG
71146401 AGA
1 AGA
71146404 TGGTAACAGC
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
12 12 0.29
13 12 0.29
15 6 0.15
16 11 0.27
ACGTcount: A:0.75, C:0.02, G:0.24, T:0.00
Consensus pattern (15 bp):
AGAAGAAAAAAAAGG
Found at i:71148561 original size:39 final size:39
Alignment explanation
Indices: 71148515--71148732 Score: 310
Period size: 39 Copynumber: 5.6 Consensus size: 39
71148505 GCTCTGGTGA
*
71148515 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
71148554 GCTTCAGTCAGCCTTTGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
71148593 GTTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
71148632 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* ** *
71148671 GCTTCAGCTAAACTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* **
71148710 GCTTCAGCTAAACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
71148733 AGATCACGAA
Statistics
Matches: 168, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 168 1.00
ACGTcount: A:0.13, C:0.26, G:0.24, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:71148733 original size:18 final size:18
Alignment explanation
Indices: 71148671--71148734 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
71148661 GCACTTATGT
71148671 GCTTCAGCTAAACTTCGG
1 GCTTCAGCTAAACTTCGG
* * * * *
71148689 GCTTCCGTTTAGCACTTATGT
1 GCTTCAG-CTA-AACTT-CGG
71148710 GCTTCAGCTAAACTTCGG
1 GCTTCAGCTAAACTTCGG
71148728 GCTTCAG
1 GCTTCAG
71148735 ATCACGAATG
Statistics
Matches: 33, Mismatches: 10, Indels: 6
0.67 0.20 0.12
Matches are distributed among these distances:
18 14 0.42
19 6 0.18
20 6 0.18
21 7 0.21
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.33
Consensus pattern (18 bp):
GCTTCAGCTAAACTTCGG
Found at i:71149354 original size:63 final size:63
Alignment explanation
Indices: 71149255--71149380 Score: 252
Period size: 63 Copynumber: 2.0 Consensus size: 63
71149245 TGATGTGTTG
71149255 AAAGGGTAAGCGCTCAAATGAAAATGTACTTATGCTCATGAGAGAGTGGCAAGTTTTAAGTTA
1 AAAGGGTAAGCGCTCAAATGAAAATGTACTTATGCTCATGAGAGAGTGGCAAGTTTTAAGTTA
71149318 AAAGGGTAAGCGCTCAAATGAAAATGTACTTATGCTCATGAGAGAGTGGCAAGTTTTAAGTTA
1 AAAGGGTAAGCGCTCAAATGAAAATGTACTTATGCTCATGAGAGAGTGGCAAGTTTTAAGTTA
71149381 TGCAATATCT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.27
Consensus pattern (63 bp):
AAAGGGTAAGCGCTCAAATGAAAATGTACTTATGCTCATGAGAGAGTGGCAAGTTTTAAGTTA
Found at i:71150051 original size:49 final size:49
Alignment explanation
Indices: 71149979--71150074 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
71149969 GTTAGACTTT
* *
71149979 AATTTTCCCTTTCATAAATCTTTGGGTTTTTATGGAGGAAATCAATTTC
1 AATTTCCCCTTTCATAAATCTTTGGGTTTTCATGGAGGAAATCAATTTC
71150028 AATTTCCCCTTTCATAAATCTTTGGGTTTTCATGGAGGAAATCAATT
1 AATTTCCCCTTTCATAAATCTTTGGGTTTTCATGGAGGAAATCAATT
71150075 GGGATACCCT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.43
Consensus pattern (49 bp):
AATTTCCCCTTTCATAAATCTTTGGGTTTTCATGGAGGAAATCAATTTC
Found at i:71151612 original size:14 final size:13
Alignment explanation
Indices: 71151579--71151620 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
71151569 ATAAGATATA
71151579 AAAGAAATGAAAG-
1 AAAGAAA-GAAAGC
71151592 AAAGAAAGAAAGC
1 AAAGAAAGAAAGC
71151605 ACAAGAAAGAATAGC
1 A-AAGAAAGAA-AGC
71151620 A
1 A
71151621 GAAGCCATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.19
13 8 0.31
14 9 0.35
15 4 0.15
ACGTcount: A:0.67, C:0.07, G:0.21, T:0.05
Consensus pattern (13 bp):
AAAGAAAGAAAGC
Found at i:71152155 original size:15 final size:14
Alignment explanation
Indices: 71152119--71152158 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
71152109 ATTTGATTGG
71152119 AAAATGAATT-AAA
1 AAAATGAATTAAAA
*
71152132 AATATGAATTAAATA
1 AAAATGAATTAAA-A
71152147 AAAATGAATTAA
1 AAAATGAATTAA
71152159 TTTATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 9 0.39
14 2 0.09
15 12 0.52
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (14 bp):
AAAATGAATTAAAA
Found at i:71152530 original size:23 final size:23
Alignment explanation
Indices: 71152500--71152610 Score: 124
Period size: 23 Copynumber: 5.0 Consensus size: 23
71152490 GGCTTTGCCG
*
71152500 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTTATGTGTCGTAT
*
71152523 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTTATGTGTCGTAT
* **
71152546 TTCAGGCACCTCGTGTGTCG--T
1 ATCAGGCACCTTATGTGTCGTAT
**
71152567 ATCAGGCACCTCGTGTGTCGT-T
1 ATCAGGCACCTTATGTGTCGTAT
71152589 -TCAGGCA-CTTATGTGTCGTAT
1 ATCAGGCACCTTATGTGTCGTAT
71152610 A
1 A
71152611 CTGATCAGGT
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
20 10 0.13
21 28 0.36
22 1 0.01
23 39 0.50
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (23 bp):
ATCAGGCACCTTATGTGTCGTAT
Found at i:71152585 original size:44 final size:41
Alignment explanation
Indices: 71152501--71152609 Score: 110
Period size: 44 Copynumber: 2.5 Consensus size: 41
71152491 GCTTTGCCGA
* * *
71152501 TCAGGCACTTTATGTGTCGTATATCAGGCACTTTATGTGTCGTATT
1 TCAGGCAC-TCATGTGTCG--TATCAGGCACCTCATGTGTCG--TT
* *
71152547 TCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGTT
1 TCAGGCA-CTCATGTGTCGTATCAGGCACCTCATGTGTCGTT
*
71152589 TCAGGCACTTATGTGTCGTAT
1 TCAGGCACTCATGTGTCGTAT
71152610 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
41 12 0.22
42 9 0.16
44 18 0.33
46 15 0.27
47 1 0.02
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.37
Consensus pattern (41 bp):
TCAGGCACTCATGTGTCGTATCAGGCACCTCATGTGTCGTT
Found at i:71153847 original size:21 final size:21
Alignment explanation
Indices: 71153823--71153863 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
71153813 CAACGTGGCA
71153823 AGTTAA-TTGGCCACATCAGCT
1 AGTTAACTT-GCCACATCAGCT
*
71153844 AGTTAACTTGCCATATCAGC
1 AGTTAACTTGCCACATCAGC
71153864 AGTCCTGCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (21 bp):
AGTTAACTTGCCACATCAGCT
Found at i:71154360 original size:21 final size:21
Alignment explanation
Indices: 71154336--71154376 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
71154326 CAACGTGGCA
71154336 AGTTAA-TTGGCCACATCAGCT
1 AGTTAACTT-GCCACATCAGCT
71154357 AGTTAACTTGCCACATCAGC
1 AGTTAACTTGCCACATCAGC
71154377 AGTCCTGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (21 bp):
AGTTAACTTGCCACATCAGCT
Found at i:71154390 original size:513 final size:513
Alignment explanation
Indices: 71153423--71154445 Score: 1992
Period size: 513 Copynumber: 2.0 Consensus size: 513
71153413 CTCAGCGTAC
71153423 GGTTTGTTTCCGTGCGCAGATTAGGTACAAAAATTTTGAAGAGTTGTATTTGAGATTACGAGTCT
1 GGTTTGTTTCCGTGCGCAGATTAGGTACAAAAATTTTGAAGAGTTGTATTTGAGATTACGAGTCT
*
71153488 TTATCTCATCACATCTTCAAGCAACAAGGGGGTATGTTTTAAAATTTTGAATAGAATGACATGTA
66 TCATCTCATCACATCTTCAAGCAACAAGGGGGTATGTTTTAAAATTTTGAATAGAATGACATGTA
71153553 CTTAAGGAAAAATTAAGTATGTCCCAAGTAGTAGTAATGGATTTAAATATAAATTATTTAAATTT
131 CTTAAGGAAAAATTAAGTATGTCCCAAGTAGTAGTAATGGATTTAAATATAAATTATTTAAATTT
71153618 ATGATTTGTCTGTTTTTATGTTCAAATATAATAGTAATTAGCCAAGAATTACTTGGGCACCAAAT
196 ATGATTTGTCTGTTTTTATGTTCAAATATAATAGTAATTAGCCAAGAATTACTTGGGCACCAAAT
* *
71153683 GTACTATTCCTATATCAGGTTCCTCGAGTCGAACATGGTATAGGGGTGTTATAGTTTTGCCTTAA
261 GTACTATTCCTATATCAGGTTCCTCGAGTCGAACATGGTATAGGGGTGTTACAGTTTTGCCCTAA
*
71153748 ACCAACGTAACCCTTCAGATTTTTTCCCTAAACCTACCCCAAACCTTGACCGATCAGCTGCTTCA
326 ACCAACGTAACCCTTCAGATTTTTTCCCTAAACCCACCCCAAACCTTGACCGATCAGCTGCTTCA
*
71153813 CAACGTGGCAAGTTAATTGGCCACATCAGCTAGTTAACTTGCCATATCAGCAGTCCTGCTAGTGT
391 CAACGTGGCAAGTTAATTGGCCACATCAGCTAGTTAACTTGCCACATCAGCAGTCCTGCTAGTGT
71153878 CTTAATGGAAATTGTTAATCAGTGACTGTTTTGTCACTTTTTTATAACGCTAGTGTCT
456 CTTAATGGAAATTGTTAATCAGTGACTGTTTTGTCACTTTTTTATAACGCTAGTGTCT
71153936 GGTTTGTTTCCGTGCGCAGATTAGGTACAAAAATTTTGAAGAGTTGTATTTGAGATTACGAGTCT
1 GGTTTGTTTCCGTGCGCAGATTAGGTACAAAAATTTTGAAGAGTTGTATTTGAGATTACGAGTCT
71154001 TCATCTCATCACATCTTCAAGCAACAAGGGGGTATGTTTTAAAATTTTGAATAGAATGACATGTA
66 TCATCTCATCACATCTTCAAGCAACAAGGGGGTATGTTTTAAAATTTTGAATAGAATGACATGTA
71154066 CTTAAGGAAAAATTAAGTATGTCCCAAGTAGTAGTAATGGATTTAAATATAAATTATTTAAATTT
131 CTTAAGGAAAAATTAAGTATGTCCCAAGTAGTAGTAATGGATTTAAATATAAATTATTTAAATTT
71154131 ATGATTTGTCTGTTTTTATGTTCAAATATAATAGTAATTAGCCAAGAATTACTTGGGCACCAAAT
196 ATGATTTGTCTGTTTTTATGTTCAAATATAATAGTAATTAGCCAAGAATTACTTGGGCACCAAAT
71154196 GTACTATTCCTATATCAGGTTCCTCGAGTCGAACATGGTATAGGGGTGTTACAGTTTTGCCCTAA
261 GTACTATTCCTATATCAGGTTCCTCGAGTCGAACATGGTATAGGGGTGTTACAGTTTTGCCCTAA
*
71154261 ACCAACGTAACCTTTCAGATTTTTTCCCTAAACCCACCCCAAACCTTGACCGATCAGCTGCTTCA
326 ACCAACGTAACCCTTCAGATTTTTTCCCTAAACCCACCCCAAACCTTGACCGATCAGCTGCTTCA
71154326 CAACGTGGCAAGTTAATTGGCCACATCAGCTAGTTAACTTGCCACATCAGCAGTCCTGCTAGTGT
391 CAACGTGGCAAGTTAATTGGCCACATCAGCTAGTTAACTTGCCACATCAGCAGTCCTGCTAGTGT
71154391 CTTAATGGAAATTGTTAATCAGTGACTGTTTTGTCACTTTTTTATAACGCTAGTG
456 CTTAATGGAAATTGTTAATCAGTGACTGTTTTGTCACTTTTTTATAACGCTAGTG
71154446 ACTATTTTGT
Statistics
Matches: 504, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
513 504 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (513 bp):
GGTTTGTTTCCGTGCGCAGATTAGGTACAAAAATTTTGAAGAGTTGTATTTGAGATTACGAGTCT
TCATCTCATCACATCTTCAAGCAACAAGGGGGTATGTTTTAAAATTTTGAATAGAATGACATGTA
CTTAAGGAAAAATTAAGTATGTCCCAAGTAGTAGTAATGGATTTAAATATAAATTATTTAAATTT
ATGATTTGTCTGTTTTTATGTTCAAATATAATAGTAATTAGCCAAGAATTACTTGGGCACCAAAT
GTACTATTCCTATATCAGGTTCCTCGAGTCGAACATGGTATAGGGGTGTTACAGTTTTGCCCTAA
ACCAACGTAACCCTTCAGATTTTTTCCCTAAACCCACCCCAAACCTTGACCGATCAGCTGCTTCA
CAACGTGGCAAGTTAATTGGCCACATCAGCTAGTTAACTTGCCACATCAGCAGTCCTGCTAGTGT
CTTAATGGAAATTGTTAATCAGTGACTGTTTTGTCACTTTTTTATAACGCTAGTGTCT
Found at i:71158278 original size:40 final size:40
Alignment explanation
Indices: 71158223--71158304 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
71158213 TATTACAATT
71158223 GTGGATTGCTTGGCCAAGTTGGGTTTTAAATGGAATTCAA
1 GTGGATTGCTTGGCCAAGTTGGGTTTTAAATGGAATTCAA
* *
71158263 GTGGATTGCTTGGCCAAGTTGGGTTTTACATGGAATTTAA
1 GTGGATTGCTTGGCCAAGTTGGGTTTTAAATGGAATTCAA
71158303 GT
1 GT
71158305 CTTCAAATGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.23, C:0.10, G:0.30, T:0.37
Consensus pattern (40 bp):
GTGGATTGCTTGGCCAAGTTGGGTTTTAAATGGAATTCAA
Found at i:71161150 original size:43 final size:43
Alignment explanation
Indices: 71161094--71161177 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
71161084 ACAATGGTTA
* * *
71161094 TTAAATAAGGTTATTTGTATTTTGAGTATATAGTTTCATATTG
1 TTAAACAAAGTTATTTGTATTTTGAGTATATAGCTTCATATTG
*
71161137 TTAAACAAAGTTATTTGTATTTTGAGTATATTGCTTCATAT
1 TTAAACAAAGTTATTTGTATTTTGAGTATATAGCTTCATAT
71161178 GTTTTTTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.50
Consensus pattern (43 bp):
TTAAACAAAGTTATTTGTATTTTGAGTATATAGCTTCATATTG
Found at i:71162747 original size:11 final size:11
Alignment explanation
Indices: 71162720--71162753 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
71162710 TGTATTAAGC
*
71162720 TAAATAATAAT
1 TAAAAAATAAT
71162731 TAAAAAAATAAT
1 T-AAAAAATAAT
71162743 TAAAAAATAAT
1 TAAAAAATAAT
71162754 CTGGTATGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
TAAAAAATAAT
Found at i:71163046 original size:15 final size:16
Alignment explanation
Indices: 71163016--71163049 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
71163006 TTTTATATGA
*
71163016 AATTTTAATTTAATTT
1 AATTTTAATATAATTT
71163032 AATTTT-ATATAATTT
1 AATTTTAATATAATTT
71163047 AAT
1 AAT
71163050 ATATTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
AATTTTAATATAATTT
Found at i:71167903 original size:24 final size:24
Alignment explanation
Indices: 71167876--71167956 Score: 90
Period size: 24 Copynumber: 3.2 Consensus size: 24
71167866 TAATCTACAT
71167876 TATTTAAATTACTTGTGATCTTTA
1 TATTTAAATTACTTGTGATCTTTA
* * *
71167900 TATTTAAGTTAGGTCTCTCTACATCTTTA
1 TATTTAAATTA---CT-TGT-GATCTTTA
71167929 TATTTAAATTACTTGTGATCTTTA
1 TATTTAAATTACTTGTGATCTTTA
71167953 TATT
1 TATT
71167957 ATTCCACCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
24 21 0.46
25 2 0.04
26 2 0.04
27 2 0.04
28 2 0.04
29 17 0.37
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.53
Consensus pattern (24 bp):
TATTTAAATTACTTGTGATCTTTA
Found at i:71171116 original size:18 final size:18
Alignment explanation
Indices: 71171093--71171128 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
71171083 CTTTTAAATG
*
71171093 ATATTTTATTAAGTAATA
1 ATATTTTAATAAGTAATA
*
71171111 ATATTTTAATAATTAATA
1 ATATTTTAATAAGTAATA
71171129 TTATAATACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
ATATTTTAATAAGTAATA
Found at i:71173150 original size:18 final size:18
Alignment explanation
Indices: 71173127--71173168 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
71173117 TATTAATAAT
71173127 ATTTATATTCATGC-TTTA
1 ATTTATATTCAT-CATTTA
* *
71173145 ATTTATTTTTATCATTTA
1 ATTTATATTCATCATTTA
71173163 ATTTAT
1 ATTTAT
71173169 GATCAATACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (18 bp):
ATTTATATTCATCATTTA
Found at i:71176303 original size:18 final size:18
Alignment explanation
Indices: 71176280--71176317 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
71176270 GAAGAAATAT
*
71176280 GATAAT-AATTAAAGGTAA
1 GATAATGAACTAAA-GTAA
71176298 GATAATGAACTAAAGTAA
1 GATAATGAACTAAAGTAA
71176316 GA
1 GA
71176318 ATGATTCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.55, C:0.03, G:0.18, T:0.24
Consensus pattern (18 bp):
GATAATGAACTAAAGTAA
Found at i:71191448 original size:3 final size:3
Alignment explanation
Indices: 71191440--71191472 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
71191430 ATTTATATAC
71191440 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
71191473 AAGATGTATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:71191595 original size:22 final size:21
Alignment explanation
Indices: 71191556--71191596 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
71191546 TACGAAAATA
71191556 ATACTATATAAAAGTATATAT
1 ATACTATATAAAAGTATATAT
71191577 ATACGTATAATAAAA-TATAT
1 ATAC-TAT-ATAAAAGTATAT
71191597 GTACTAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 8 0.44
23 6 0.33
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.37
Consensus pattern (21 bp):
ATACTATATAAAAGTATATAT
Found at i:71192404 original size:14 final size:15
Alignment explanation
Indices: 71192373--71192407 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
71192363 TGATGACATT
*
71192373 AATAATAGATATTAA
1 AATAATAGATACTAA
71192388 AATAATA-ATACTAA
1 AATAATAGATACTAA
71192402 AATAAT
1 AATAAT
71192408 TAACTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATAATAGATACTAA
Found at i:71195036 original size:23 final size:23
Alignment explanation
Indices: 71195010--71195053 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
71195000 GTTCTATTAT
*
71195010 GAAAT-GTTGGATTTTTTGTCATG
1 GAAATAGTT-GATTTATTGTCATG
71195033 GAAATAGTTGATTTATTGTCA
1 GAAATAGTTGATTTATTGTCA
71195054 CAAAATATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.27, C:0.05, G:0.23, T:0.45
Consensus pattern (23 bp):
GAAATAGTTGATTTATTGTCATG
Found at i:71196847 original size:24 final size:24
Alignment explanation
Indices: 71196815--71196862 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
71196805 GTTTTGTTCA
71196815 TGACATCCCTTGCTGGTGAGAGTG
1 TGACATCCCTTGCTGGTGAGAGTG
71196839 TGACATCCCTTGCTGGTGAGAGTG
1 TGACATCCCTTGCTGGTGAGAGTG
71196863 GAACACCCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.21, G:0.33, T:0.29
Consensus pattern (24 bp):
TGACATCCCTTGCTGGTGAGAGTG
Found at i:71201621 original size:3 final size:3
Alignment explanation
Indices: 71201575--71201609 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
71201565 AACATAAACA
71201575 AAT AAGT AAT AAT AAT AAT AAT AAT AAT AA- AAT AA
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
71201610 ACAAAATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 25 0.83
4 3 0.10
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:71203325 original size:44 final size:44
Alignment explanation
Indices: 71203128--71203763 Score: 258
Period size: 44 Copynumber: 14.7 Consensus size: 44
71203118 ATCGGCTTCA
* * ** *
71203128 ATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTAAAAT-TCTTC
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TACTATCT-TTG
** * * *
71203173 AGTCTATTCCACTGTAATCTCAGGGAAATAAGA--CCTGA--TGTG
1 A-TCTGCTCCACTGTAATCTCAGGGAGATAAGATTACT-ATCTTTG
* * * *
71203215 ATCTTCTCTACTGTAA-CTTCAGAGAGATAAGA-T-C---CTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTATCTTTG
* * ** *
71203254 ATCCGCTCCATTGTAATCTCAATGAGATAGGATTACTATCTTTG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTG
* ** *
71203298 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAAT-TCTTC
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TACTATCT-TTG
** * *
71203343 AGTCTATTCCACTGTAATCTCAGGGAAATAAGACCTAC-A-C---G
1 A-TCTGCTCCACTGTAATCTCAGGGAGATAAGA-TTACTATCTTTG
* ** * * *
71203384 ATCTACTCTGCTGTAA-CTTCAGAGAGATAAGA-TCCT-TCATTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTATC--TTTG
* * ** **
71203428 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTG
* *
71203472 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGA-AATTCTTTG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-T-ACTA-TCTTTG
* * * * *
71203518 GTCTGTTCCACTGTAATCTCAGGGAAATAAGA--CCTGA--TGTG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACT-ATCTTTG
* * * *
71203559 ATCTTCTCTACTGTAA-CTTCAGAGAGATAAGA-T-C---CTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTATCTTTG
* * * *
71203598 ATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTG
* * ** **
71203642 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TACTATCTTTG
* * *
71203686 ATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGA-AATTCTTTG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-T-ACTA-TCTTTG
* * *
71203732 GTCTGTTCCCCTGTAATCTCAGGGAGATAAGA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA
71203764 CCTGTATAAT
Statistics
Matches: 437, Mismatches: 109, Indels: 89
0.69 0.17 0.14
Matches are distributed among these distances:
38 2 0.00
39 52 0.12
40 30 0.07
41 56 0.13
42 2 0.00
43 1 0.00
44 160 0.37
45 15 0.03
46 119 0.27
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTATCTTTG
Found at i:71203675 original size:170 final size:170
Alignment explanation
Indices: 71203128--71203676 Score: 866
Period size: 170 Copynumber: 3.2 Consensus size: 170
71203118 ATCGGCTTCA
*
71203128 ATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTAAAATTCTTCAGTCTATTCCACTGTAATCT
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCAGTCTATTCCACTGTAATCT
71203193 CAGGGAAATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
66 CAGGGAAATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
*
71203258 GCTCCATTGTAATCTCAATGAGATAGGATTACTATCTTTG
131 GCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTG
71203298 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCAGTCTATTCCACTGTAATCT
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCAGTCTATTCCACTGTAATCT
*** * *
71203363 CAGGGAAATAAGACCT-ACACGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCATTTT
66 CAGGGAAATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGAT-C--C--TTT
* * ** **
71203427 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
126 AATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTG
* * * ** *
71203472 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCT
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCAGTCTATTCCACTGTAATCT
71203537 CAGGGAAATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
66 CAGGGAAATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
71203602 GCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTG
131 GCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTG
*
71203642 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCT
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
71203677 CTGGCTTCAA
Statistics
Matches: 340, Mismatches: 33, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
169 33 0.10
170 155 0.46
172 2 0.01
174 117 0.34
175 33 0.10
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (170 bp):
ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCAGTCTATTCCACTGTAATCT
CAGGGAAATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
GCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTG
Found at i:71216601 original size:3 final size:3
Alignment explanation
Indices: 71216549--71216589 Score: 66
Period size: 3 Copynumber: 13.7 Consensus size: 3
71216539 AACATAAACA
71216549 AAT AAGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AA
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
71216590 ACAAAATAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.06
3 31 0.86
4 3 0.08
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:71218068 original size:75 final size:75
Alignment explanation
Indices: 71217940--71218091 Score: 268
Period size: 75 Copynumber: 2.0 Consensus size: 75
71217930 TATGAGATTA
* *
71217940 AAGAAACCCCATCAGTTCATCAACGGAGAGAACTGAAAGGTCTTTGGATTCTTCTATAGCAGCCA
1 AAGAAACCCCATCAGTTCATCAACGGAGAGAACTGAAAGGTCTTTGGATTCTTCTATAACAACCA
71218005 CAACATGATC
66 CAACATGATC
* *
71218015 AAGAGACCCCATCATTTCATCAACGGAGAGAACTGAAAGGTCTTTGGATTCTTCTATAACAACCA
1 AAGAAACCCCATCAGTTCATCAACGGAGAGAACTGAAAGGTCTTTGGATTCTTCTATAACAACCA
71218080 CAACATGATC
66 CAACATGATC
71218090 AA
1 AA
71218092 ATTTTATCGT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (75 bp):
AAGAAACCCCATCAGTTCATCAACGGAGAGAACTGAAAGGTCTTTGGATTCTTCTATAACAACCA
CAACATGATC
Found at i:71229128 original size:3 final size:3
Alignment explanation
Indices: 71229120--71229148 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
71229110 TTAAATATTT
71229120 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
71229149 TTTATCGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:71230580 original size:101 final size:101
Alignment explanation
Indices: 71230405--71230609 Score: 392
Period size: 101 Copynumber: 2.0 Consensus size: 101
71230395 ATAATTCAAT
71230405 AAATTTAACCCTTCACATTTACAAATTCTATCAATTTGATTATCAAACTTCCTAATCAAAGCTTT
1 AAATTTAACCCTTCACATTTACAAATTCTATCAATTTGATTATCAAACTTCCTAATCAAAGCTTT
71230470 CAACTTTTAAAACGGAAGTATTTGTAAGCAATACTC
66 CAACTTTTAAAACGGAAGTATTTGTAAGCAATACTC
*
71230506 AAATTTAACCCTTCACATTTACAAATTCTATCAATTTGATTATCAAACTTCCTAATCAAATCTTT
1 AAATTTAACCCTTCACATTTACAAATTCTATCAATTTGATTATCAAACTTCCTAATCAAAGCTTT
*
71230571 CAACTTTTAAAATGGAAGTATTTGTAAGCAATACTC
66 CAACTTTTAAAACGGAAGTATTTGTAAGCAATACTC
71230607 AAA
1 AAA
71230610 CTTCTATTTG
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
101 102 1.00
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.36
Consensus pattern (101 bp):
AAATTTAACCCTTCACATTTACAAATTCTATCAATTTGATTATCAAACTTCCTAATCAAAGCTTT
CAACTTTTAAAACGGAAGTATTTGTAAGCAATACTC
Found at i:71233683 original size:16 final size:16
Alignment explanation
Indices: 71233634--71233683 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
71233624 ATTACTTTTC
71233634 CCTCAAAACTTTTACT
1 CCTCAAAACTTTTACT
**
71233650 CCTTC-CCA-TTTT-CT
1 CC-TCAAAACTTTTACT
71233664 CCTCAAAACTTTTACT
1 CCTCAAAACTTTTACT
71233680 CCTC
1 CCTC
71233684 TTCCATCCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
13 2 0.08
14 5 0.19
15 8 0.31
16 9 0.35
17 2 0.08
ACGTcount: A:0.22, C:0.38, G:0.00, T:0.40
Consensus pattern (16 bp):
CCTCAAAACTTTTACT
Found at i:71234519 original size:5 final size:5
Alignment explanation
Indices: 71234509--71234540 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
71234499 AAATATATTT
*
71234509 GATTC GATTC GATTC GATTC GATTC AATTC GA
1 GATTC GATTC GATTC GATTC GATTC GATTC GA
71234541 ATTTCATCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
GATTC
Found at i:71237437 original size:30 final size:30
Alignment explanation
Indices: 71237396--71237521 Score: 198
Period size: 30 Copynumber: 4.2 Consensus size: 30
71237386 CTAGCCTTTA
71237396 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
71237426 CCACCAACAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
71237456 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
71237486 CCACCACCTACTCCATTAACCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
71237516 CCACCA
1 CCACCA
71237522 TCACTTGCCT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 89 1.00
ACGTcount: A:0.27, C:0.48, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:71244962 original size:61 final size:61
Alignment explanation
Indices: 71244892--71245015 Score: 178
Period size: 61 Copynumber: 2.0 Consensus size: 61
71244882 TTGTCCTACT
* * * * *
71244892 AATTAATTTTCTATATTATTTCAACGGATT-TTTTACAAGTATTTTATATTCATCATTTTTA
1 AATTAATTTTCTATATTATTTCAACAGATTCTTCT-CAAGTATTATATATACATAATTTTTA
*
71244953 AATTAATTTTCTGTATTATTTCAACAGATTCTTCTCAAGTATTATATATACATAATTTTTA
1 AATTAATTTTCTATATTATTTCAACAGATTCTTCTCAAGTATTATATATACATAATTTTTA
71245014 AA
1 AA
71245016 ATTTATTCAA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
61 53 0.95
62 3 0.05
ACGTcount: A:0.34, C:0.10, G:0.05, T:0.51
Consensus pattern (61 bp):
AATTAATTTTCTATATTATTTCAACAGATTCTTCTCAAGTATTATATATACATAATTTTTA
Found at i:71245054 original size:16 final size:16
Alignment explanation
Indices: 71245033--71245066 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
71245023 CAAAAACAAG
71245033 TTTTATATATACATTA
1 TTTTATATATACATTA
* *
71245049 TTTTATATGTGCATTA
1 TTTTATATATACATTA
71245065 TT
1 TT
71245067 ATATTTACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (16 bp):
TTTTATATATACATTA
Found at i:71264557 original size:24 final size:24
Alignment explanation
Indices: 71264530--71264575 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
71264520 TATATATATA
*
71264530 TATTA-GTAATAAAATCTTTGATTC
1 TATTATGTAACAAAAT-TTTGATTC
*
71264554 TATTATTTAACAAAATTTTGAT
1 TATTATGTAACAAAATTTTGAT
71264576 CCAAAAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.48
Consensus pattern (24 bp):
TATTATGTAACAAAATTTTGATTC
Found at i:71265487 original size:5 final size:5
Alignment explanation
Indices: 71265477--71265502 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
71265467 CATCTTGTTC
71265477 TTGAA TTGAA TTGAA TTGAA TTGAA T
1 TTGAA TTGAA TTGAA TTGAA TTGAA T
71265503 GAAGAAGGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.42
Consensus pattern (5 bp):
TTGAA
Found at i:71266817 original size:33 final size:33
Alignment explanation
Indices: 71266775--71266840 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
71266765 CATATGCAAC
71266775 TTTATGAATTAAGTATACCTGAGTTGGATTACA
1 TTTATGAATTAAGTATACCTGAGTTGGATTACA
71266808 TTTATGAATTAAGTATACCTGAGTTGGATTACA
1 TTTATGAATTAAGTATACCTGAGTTGGATTACA
71266841 AAATGTTATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.39
Consensus pattern (33 bp):
TTTATGAATTAAGTATACCTGAGTTGGATTACA
Found at i:71268926 original size:10 final size:10
Alignment explanation
Indices: 71268907--71268938 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
71268897 AACAGAGAAA
71268907 AAAAAAAAAG
1 AAAAAAAAAG
*
71268917 AAAAAGAAAG
1 AAAAAAAAAG
71268927 AAAAAAAAAG
1 AAAAAAAAAG
71268937 AA
1 AA
71268939 GCTTTCTTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:71273087 original size:16 final size:16
Alignment explanation
Indices: 71273066--71273097 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
71273056 AAATTATGAG
71273066 TTTTAATAATATAATT
1 TTTTAATAATATAATT
71273082 TTTTAATAATATAATT
1 TTTTAATAATATAATT
71273098 CGGTTGATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTTAATAATATAATT
Found at i:71276666 original size:16 final size:16
Alignment explanation
Indices: 71276645--71276680 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
71276635 TATTTATTAT
71276645 AAATATTTACGAAGTA
1 AAATATTTACGAAGTA
71276661 AAATATTTACGAAGTA
1 AAATATTTACGAAGTA
71276677 AAAT
1 AAAT
71276681 GAGTGGTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.53, C:0.06, G:0.11, T:0.31
Consensus pattern (16 bp):
AAATATTTACGAAGTA
Found at i:71276887 original size:8 final size:8
Alignment explanation
Indices: 71276874--71276902 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
71276864 TTATGTTTAG
71276874 TATATTAT
1 TATATTAT
71276882 TATATTAT
1 TATATTAT
71276890 TATATTAT
1 TATATTAT
71276898 TATAT
1 TATAT
71276903 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:71276935 original size:5 final size:5
Alignment explanation
Indices: 71276925--71276960 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
71276915 TTATGTTTTA
*
71276925 ATTAT ATTAT ATTAT ATTAT ACTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
71276961 AAACTAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (5 bp):
ATTAT
Found at i:71278250 original size:15 final size:15
Alignment explanation
Indices: 71278230--71278286 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
71278220 CGATGAATTT
71278230 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
71278245 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
*
71278260 ATTGAATTTGTATTG
1 ATTGAATTTATATTG
71278275 ATTGAA-TTATAT
1 ATTGAATTTATAT
71278287 AATATATATG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
14 5 0.14
15 31 0.86
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:71278705 original size:21 final size:21
Alignment explanation
Indices: 71278681--71278765 Score: 125
Period size: 21 Copynumber: 4.0 Consensus size: 21
71278671 GTGTCATATT
71278681 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
71278702 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
*
71278723 TCAGGCACCTCGTGTGTCGTT
1 TCAGGCACCTCGTGTGTCGTA
* * **
71278744 TTAGGCACTTTATGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
71278765 T
1 T
71278766 ACTGATCAGG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 58 1.00
ACGTcount: A:0.14, C:0.25, G:0.27, T:0.34
Consensus pattern (21 bp):
TCAGGCACCTCGTGTGTCGTA
Found at i:71278737 original size:42 final size:42
Alignment explanation
Indices: 71278657--71278765 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
71278647 GGCTTTATCG
* * *
71278657 ATCAGGCACTTTATGTGTCATATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTA--TCAGGCACCTCGTGTGTCGT
*
71278701 ATCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
* * * *
71278743 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGTAT
71278766 ACTGATCAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 38 0.68
44 18 0.32
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.36
Consensus pattern (42 bp):
ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:71283053 original size:6 final size:6
Alignment explanation
Indices: 71283042--71283067 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
71283032 ACACCGTAGG
71283042 GTAACA GTAACA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GT
71283068 CATAGTCAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:71284245 original size:31 final size:31
Alignment explanation
Indices: 71284210--71284269 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
71284200 GTCTAATGAG
71284210 AAAGGATTTAAAAGAAAATTAGACCCAAATA
1 AAAGGATTTAAAAGAAAATTAGACCCAAATA
71284241 AAAGGATTTAAAAGAAAATTAGACCCAAA
1 AAAGGATTTAAAAGAAAATTAGACCCAAA
71284270 ATTTATTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.58, C:0.10, G:0.13, T:0.18
Consensus pattern (31 bp):
AAAGGATTTAAAAGAAAATTAGACCCAAATA
Found at i:71286660 original size:14 final size:14
Alignment explanation
Indices: 71286641--71286670 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
71286631 TATCTTATAA
71286641 ATATGCGTGAATCT
1 ATATGCGTGAATCT
*
71286655 ATATGCGTTAATCT
1 ATATGCGTGAATCT
71286669 AT
1 AT
71286671 CTTGAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (14 bp):
ATATGCGTGAATCT
Found at i:71287029 original size:22 final size:22
Alignment explanation
Indices: 71286985--71287029 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
71286975 TTCCCTGTTC
* *
71286985 TTTCTTTTTTTTTTCTATTTTA
1 TTTCTTTATTCTTTCTATTTTA
71287007 TTTCTTTATTCTTT-TATTATTA
1 TTTCTTTATTCTTTCTATT-TTA
71287029 T
1 T
71287030 ATTATATCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTCTTTATTCTTTCTATTTTA
Found at i:71288969 original size:22 final size:23
Alignment explanation
Indices: 71288941--71288989 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 23
71288931 AGTATTTTCG
71288941 TTATTTTATT-TCACTTT-AAATA
1 TTATTTTATTATCA-TTTAAAATA
71288963 TTATTTTATTATCATTTACAAATA
1 TTATTTTATTATCATTTA-AAATA
71288987 TTA
1 TTA
71288990 GTGTATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 13 0.54
23 3 0.12
24 8 0.33
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (23 bp):
TTATTTTATTATCATTTAAAATA
Found at i:71289146 original size:3 final size:3
Alignment explanation
Indices: 71289133--71289202 Score: 61
Period size: 3 Copynumber: 22.7 Consensus size: 3
71289123 TTTTCTTTTG
* ** *
71289133 TAT TTT TAT TAT TAT TGC TAT TAT TGT TAT TAT TAT TAT TATT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
*
71289179 TAT TA- TATT TAT ATAA TAT TAT TA
1 TAT TAT TA-T TAT -TAT TAT TAT TA
71289203 ATAGGTACTT
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
2 2 0.04
3 44 0.83
4 7 0.13
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:71289468 original size:24 final size:22
Alignment explanation
Indices: 71289441--71289498 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
71289431 TAGTGTGTTT
71289441 TATTATATGTATATATACTCTCAA
1 TATTATAT-TAT-TATACTCTCAA
* *
71289465 TATTATATTCTTATACTCTTAA
1 TATTATATTATTATACTCTCAA
**
71289487 TACCATATTATT
1 TATTATATTATT
71289499 CTTATTATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 19 0.66
23 2 0.07
24 8 0.28
ACGTcount: A:0.34, C:0.14, G:0.02, T:0.50
Consensus pattern (22 bp):
TATTATATTATTATACTCTCAA
Found at i:71293766 original size:17 final size:18
Alignment explanation
Indices: 71293736--71293773 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
71293726 CCTCCCTCTC
*
71293736 TTTTCCTCTCGTTTTTCT
1 TTTTCCTCTCGTTTTCCT
*
71293754 TTTTCTTCT-GTTTTCCT
1 TTTTCCTCTCGTTTTCCT
71293771 TTT
1 TTT
71293774 ATGTTTGCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.00, C:0.24, G:0.05, T:0.71
Consensus pattern (18 bp):
TTTTCCTCTCGTTTTCCT
Found at i:71294060 original size:109 final size:109
Alignment explanation
Indices: 71293869--71294090 Score: 444
Period size: 109 Copynumber: 2.0 Consensus size: 109
71293859 ATCCTCCAGC
71293869 AGTTGACCATTGCTCTTTTGTTGGTGGGCCTCTCCTTGCCCCCAATGGTCTCATGGGTATCTCCT
1 AGTTGACCATTGCTCTTTTGTTGGTGGGCCTCTCCTTGCCCCCAATGGTCTCATGGGTATCTCCT
71293934 TTGGTTGCTTTGGAGCTTTCCTCCTTTTTTGCTCTTGGGTCTCG
66 TTGGTTGCTTTGGAGCTTTCCTCCTTTTTTGCTCTTGGGTCTCG
71293978 AGTTGACCATTGCTCTTTTGTTGGTGGGCCTCTCCTTGCCCCCAATGGTCTCATGGGTATCTCCT
1 AGTTGACCATTGCTCTTTTGTTGGTGGGCCTCTCCTTGCCCCCAATGGTCTCATGGGTATCTCCT
71294043 TTGGTTGCTTTGGAGCTTTCCTCCTTTTTTGCTCTTGGGTCTCG
66 TTGGTTGCTTTGGAGCTTTCCTCCTTTTTTGCTCTTGGGTCTCG
71294087 AGTT
1 AGTT
71294091 TTCTTCCAAC
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
109 113 1.00
ACGTcount: A:0.08, C:0.26, G:0.24, T:0.42
Consensus pattern (109 bp):
AGTTGACCATTGCTCTTTTGTTGGTGGGCCTCTCCTTGCCCCCAATGGTCTCATGGGTATCTCCT
TTGGTTGCTTTGGAGCTTTCCTCCTTTTTTGCTCTTGGGTCTCG
Found at i:71298613 original size:17 final size:18
Alignment explanation
Indices: 71298593--71298633 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
71298583 TACCTAATAT
71298593 TTATATTTATTA-TAAAA
1 TTATATTTATTATTAAAA
*
71298610 TTAT-TTTCTTATTAAAA
1 TTATATTTATTATTAAAA
71298627 TT-TATTT
1 TTATATTT
71298634 CAAATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
TTATATTTATTATTAAAA
Done.