Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 233 of 250
Found at i:71956274 original size:15 final size:15
Alignment explanation
Indices: 71956238--71956275 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
71956228 AATAGATTTC
*
71956238 ATGAAGAGTCGGAAA
1 ATGAAGTGTCGGAAA
71956253 ATGAAGTGTCGGAAA
1 ATGAAGTGTCGGAAA
71956268 ATGAAGTG
1 ATGAAGTG
71956276 GAGAGTAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.42, C:0.05, G:0.34, T:0.18
Consensus pattern (15 bp):
ATGAAGTGTCGGAAA
Found at i:71962084 original size:7 final size:7
Alignment explanation
Indices: 71961996--71962084 Score: 55
Period size: 7 Copynumber: 13.3 Consensus size: 7
71961986 TTGATATAAA
71961996 AATATAT
1 AATATAT
*
71962003 ATTATAT
1 AATATAT
*
71962010 ATTATATT
1 AATATA-T
*
71962018 AA-CT-T
1 AATATAT
*
71962023 AATATTT
1 AATATAT
71962030 AAGTAT-T
1 AA-TATAT
71962037 AATATAT
1 AATATAT
71962044 AATATAT
1 AATATAT
*
71962051 TATAT-T
1 AATATAT
*
71962057 ATTATAT
1 AATATAT
*
71962064 TATATAT
1 AATATAT
71962071 -A-ATAT
1 AATATAT
71962076 AATATAT
1 AATATAT
71962083 AA
1 AA
71962085 AACATAAGTA
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
5 7 0.11
6 10 0.15
7 43 0.66
8 5 0.08
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (7 bp):
AATATAT
Found at i:71975793 original size:12 final size:12
Alignment explanation
Indices: 71975773--71975837 Score: 53
Period size: 12 Copynumber: 5.2 Consensus size: 12
71975763 AAATATATAC
*
71975773 AAATCATATAAT
1 AAATAATATAAT
71975785 AAATAATATAA-
1 AAATAATATAAT
71975796 AAAT-ATATAAT
1 AAATAATATAAT
*
71975807 AAAATCTATATAAT
1 -AAAT-AATATAAT
*
71975821 ATATATATATATAT
1 AAATA-ATATA-AT
71975835 AAA
1 AAA
71975838 AGAAAGATAG
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
10 6 0.14
11 4 0.09
12 14 0.33
13 8 0.19
14 11 0.26
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (12 bp):
AAATAATATAAT
Found at i:71975803 original size:22 final size:22
Alignment explanation
Indices: 71975763--71975838 Score: 70
Period size: 22 Copynumber: 3.5 Consensus size: 22
71975753 TTTACAAATA
*
71975763 AAATATATACAAATCATATAAT
1 AAATATATAAAAATCATATAAT
71975785 AAATAATATAAAAAT-ATATAAT
1 AAAT-ATATAAAAATCATATAAT
* *
71975807 AAA-ATCTATATAAT-ATAT-AT
1 AAATATATA-AAAATCATATAAT
*
71975827 ATATATATAAAA
1 AAATATATAAAA
71975839 GAAAGATAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
20 10 0.22
21 12 0.27
22 14 0.31
23 9 0.20
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (22 bp):
AAATATATAAAAATCATATAAT
Found at i:71975819 original size:11 final size:11
Alignment explanation
Indices: 71975760--71975829 Score: 56
Period size: 11 Copynumber: 6.3 Consensus size: 11
71975750 TAATTTACAA
71975760 ATAAAATATAT
1 ATAAAATATAT
*
71975771 A-CAAATCATAT
1 ATAAAAT-ATAT
71975782 A-ATAAATA-AT
1 ATA-AAATATAT
71975792 ATAAAAATATAT
1 AT-AAAATATAT
*
71975804 AATAAAATCTAT
1 -ATAAAATATAT
*
71975816 ATAATATATAT
1 ATAAAATATAT
71975827 ATA
1 ATA
71975830 TATATAAAAG
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
10 7 0.15
11 24 0.50
12 15 0.31
13 2 0.04
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.34
Consensus pattern (11 bp):
ATAAAATATAT
Found at i:71975922 original size:21 final size:22
Alignment explanation
Indices: 71975898--71975948 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
71975888 ATGCATAAAT
* *
71975898 AAAATATAATGAAAT-ATGATA
1 AAAATATAATAAAATAATAATA
71975919 AAAATAT-ATAAAATAATAATA
1 AAAATATAATAAAATAATAATA
*
71975940 ATAATATAA
1 AAAATATAA
71975949 GAAGTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 6 0.24
21 18 0.72
22 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (22 bp):
AAAATATAATAAAATAATAATA
Found at i:71977898 original size:86 final size:85
Alignment explanation
Indices: 71977632--71977900 Score: 219
Period size: 86 Copynumber: 3.1 Consensus size: 85
71977622 CCAAATCATT
*
71977632 TTGGATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTTGCTATGTATCTGCTCTCCGTCGAAA
1 TTGGATCTGCTTCAGTAAAATCATCTGAAGGTTAGATC-TGCTATGTGTCTGCTCTCC-TCGAAA
* *
71977697 TGGAAATACCAGATCTGTTATC
64 TGGAGATGCCAGATCTGTTATC
** * * * * * *
71977719 TTGGATCTGCTTTGGTGTAAAAACATCCGAAAGTCAAATCTGCTATGTCTTCGATTTG-T-TCCT
1 TTGGATCTGC-TT-CAGTAAAATCATCTGAAGGTTAGATCTGCTATG---T-G-TCTGCTCTCCT
* *** *
71977782 TGTAAACACAAGAATG-CAAATC----ATC
59 CG-AAA-TGGAG-ATGCCAGATCTGTTATC
*
71977807 TTGGATCTGCTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAAAT
1 TTGGATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCC-TCGAAAT
71977872 GGAGATGCCAGATCTGTTATC
65 GGAGATGCCAGATCTGTTATC
71977893 TTGGATCT
1 TTGGATCT
71977901 ATTTTGGTGT
Statistics
Matches: 134, Mismatches: 30, Indels: 37
0.67 0.15 0.18
Matches are distributed among these distances:
81 6 0.04
82 9 0.07
83 7 0.05
84 2 0.01
86 36 0.27
87 12 0.09
88 22 0.16
89 19 0.14
90 2 0.01
91 7 0.05
92 7 0.05
93 5 0.04
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (85 bp):
TTGGATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCTCGAAATG
GAGATGCCAGATCTGTTATC
Found at i:71978236 original size:175 final size:174
Alignment explanation
Indices: 71977588--71978297 Score: 1033
Period size: 175 Copynumber: 4.1 Consensus size: 174
71977578 AAATCTGTTG
* ** * *
71977588 TGTCTTTGATTTACTCCTTGTGAACACAATG-ATGCCAAATCATTTTGGATCTGCTTCAGTA-AA
1 TGTCTTCGATTTGTTCCTTGTAAACACAA-GAATG-CAAATCATCTTGGATCTGCTTCAGTATAA
* * *
71977651 ATCATCTGAAGGTTAGATCTTGCTATGTATCTGCTCTCCGTCGAAATGGAAATACCAGATCTGTT
64 A-CATCTGAAGGTTAGATC-TGCTATGTGTCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTT
* * *
71977716 ATCTTGGATCTGCTTTGGTGTAAAAACATCCGAAAGTCAAATCTGCTA
127 ATCTTGGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAGATCTGCTA
*
71977764 TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCAGTATAATC
1 TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCAGTATAAAC
*
71977829 ATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAAATGGAGATGCCAGATCTGTTATCT
66 ATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTTATCT
** *
71977894 TGGATCTATTTTGGTGTGAGAACATCCAAAAGTCAGATCTGCTA
131 TGGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAGATCTGCTA
* * *
71977938 TGTCTTCGATTTGTTCCTTGTAAACATAAGAATGCCAA--A---T--ATCTGCTTCAGTATAATC
1 TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCAGTATAAAC
* * *
71977996 ACCTGAAGGTTAAATCTACTATGTGTCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTTATCT
66 ATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTTATCT
* * *
71978061 TGGATCTGTTTTGGTGTGAGAACATCCAAAAGTCAGATCTGCCA
131 TGGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAGATCTGCTA
*
71978105 TATCTTCGATTTGTTCCTTGTAAACACAAGAATGTCAAATCATCTTGGATCTGCTTCAGTATAAA
1 TGTCTTCGATTTGTTCCTTGTAAACACAAGAATG-CAAATCATCTTGGATCTGCTTCAGTATAAA
* * *
71978170 CATCTGAAGGTTAGATCTGCTATGTGTTTGCTCTCCGTTGAAATGGAGATGCCAGATCTATTATC
65 CATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTTATC
*
71978235 TTGGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAGACCTGCTA
130 TTGGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAGATCTGCTA
*
71978280 TGTCTTCGATTTGCTCCT
1 TGTCTTCGATTTGTTCCT
71978298 CGTCGAAGAT
Statistics
Matches: 484, Mismatches: 40, Indels: 21
0.89 0.07 0.04
Matches are distributed among these distances:
167 153 0.32
168 3 0.01
169 1 0.00
170 1 0.00
172 1 0.00
173 1 0.00
174 119 0.25
175 175 0.36
176 30 0.06
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (174 bp):
TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCAGTATAAAC
ATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTTATCT
TGGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAGATCTGCTA
Found at i:71978245 original size:86 final size:86
Alignment explanation
Indices: 71977978--71978246 Score: 210
Period size: 86 Copynumber: 3.1 Consensus size: 86
71977968 AATGCCAAAT
* * * * * *
71977978 ATCTGCTTCAGTATAATCACCTGAAGGTTAAATCTACTATGTGTCTGCTCTCCGTCGAAATGGAG
1 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTTTGCTCTCCGTTGAAATGGAG
*
71978043 ATGCCAGATCTGTTATCTTGG
66 ATGCCAGATCTATTATCTTGG
* ** * ** * * *
71978064 ATCTGTTTTGGTGTGAGAACATCCAAAAGTCAGATCTGCCATATCTTCGATTTG-T-TCC-TTGT
1 ATCTGCTTCAGTAT-A-AACATCTGAAGGTTAGATCTG-C-TAT-GT-G-TTTGCTCTCCGTTG-
*** * *
71978126 AAACACAAGAATGTCA-A---ATCATCTTGG
58 AAA-TGGAG-ATGCCAGATCTATTATCTTGG
71978153 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTTTGCTCTCCGTTGAAATGGAG
1 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTTTGCTCTCCGTTGAAATGGAG
71978218 ATGCCAGATCTATTATCTTGG
66 ATGCCAGATCTATTATCTTGG
71978239 ATCTGCTT
1 ATCTGCTT
71978247 TGGTGTGAAA
Statistics
Matches: 131, Mismatches: 35, Indels: 34
0.65 0.17 0.17
Matches are distributed among these distances:
82 9 0.07
83 5 0.04
84 7 0.05
85 6 0.05
86 28 0.21
87 18 0.14
88 14 0.11
89 19 0.15
90 5 0.04
91 7 0.05
92 5 0.04
93 8 0.06
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (86 bp):
ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTTTGCTCTCCGTTGAAATGGAG
ATGCCAGATCTATTATCTTGG
Found at i:71978262 original size:342 final size:342
Alignment explanation
Indices: 71977636--71978297 Score: 1092
Period size: 342 Copynumber: 1.9 Consensus size: 342
71977626 ATCATTTTGG
* * *
71977636 ATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTTGCTATGTATCTGCTCTCCGTCGAAATGGA
1 ATCTGCTTCAGTAAAATCACCTGAAGGTTAAATCTTACTATGTATCTGCTCTCCGTCGAAATGGA
* * *
71977701 AATACCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAAAACATCCGAAAGTCAAATCTGCTATG
66 AATACCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAAAACATCCAAAAGTCAAATCTGCCATA
*
71977766 TCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCAGTATAATCAT
131 TCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCAGTATAAACAT
*
71977831 CTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAAATGGAGATGCCAGATCTGTTATCTTG
196 CTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAAATGGAGATGCCAGATCTATTATCTTG
* * * *
71977896 GATCTATTTTGGTGTGAGAACATCCAAAAGTCAGATCTGCTATGTCTTCGATTTGTTCCTTGTAA
261 GATCTACTTTGGTGTGAAAACATCCAAAAGTCAGACCTGCTATGTCTTCGATTTGCTCCTTGTAA
71977961 ACATAAGAATGCCAAAT
326 ACATAAGAATGCCAAAT
* *
71977978 ATCTGCTTCAGTATAATCACCTGAAGGTTAAATC-TACTATGTGTCTGCTCTCCGTCGAAATGGA
1 ATCTGCTTCAGTAAAATCACCTGAAGGTTAAATCTTACTATGTATCTGCTCTCCGTCGAAATGGA
* * * * * *
71978042 GATGCCAGATCTGTTATCTTGGATCTGTTTTGGTGTGAGAACATCCAAAAGTCAGATCTGCCATA
66 AATACCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAAAACATCCAAAAGTCAAATCTGCCATA
71978107 TCTTCGATTTGTTCCTTGTAAACACAAGAATGTCAAATCATCTTGGATCTGCTTCAGTATAAACA
131 TCTTCGATTTGTTCCTTGTAAACACAAGAATG-CAAATCATCTTGGATCTGCTTCAGTATAAACA
* * *
71978172 TCTGAAGGTTAGATCTGCTATGTGTTTGCTCTCCGTTGAAATGGAGATGCCAGATCTATTATCTT
195 TCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAAATGGAGATGCCAGATCTATTATCTT
*
71978237 GGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAGACCTGCTATGTCTTCGATTTGCTCCT
260 GGATCTACTTTGGTGTGAAAACATCCAAAAGTCAGACCTGCTATGTCTTCGATTTGCTCCT
71978298 CGTCGAAGAT
Statistics
Matches: 295, Mismatches: 24, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
341 116 0.39
342 179 0.61
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (342 bp):
ATCTGCTTCAGTAAAATCACCTGAAGGTTAAATCTTACTATGTATCTGCTCTCCGTCGAAATGGA
AATACCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAAAACATCCAAAAGTCAAATCTGCCATA
TCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCAGTATAAACAT
CTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAAATGGAGATGCCAGATCTATTATCTTG
GATCTACTTTGGTGTGAAAACATCCAAAAGTCAGACCTGCTATGTCTTCGATTTGCTCCTTGTAA
ACATAAGAATGCCAAAT
Found at i:71983005 original size:146 final size:146
Alignment explanation
Indices: 71982741--71983043 Score: 561
Period size: 146 Copynumber: 2.1 Consensus size: 146
71982731 CTATAATGTC
*
71982741 CTCCTCCGCATTGATGGTTATTAACCGTCCATCGGTCACTAGTTTCAATTTCTGGTGCAACGACG
1 CTCCTCCGTATTGATGGTTATTAACCGTCCATCGGTCACTAGTTTCAATTTCTGGTGCAACGACG
*
71982806 AGGGCACCGCTCCTGCTGAGTGTATCCATGGCCTGCCTAATAAGCAATTGTAGGAAGGCTTGATA
66 AAGGCACCGCTCCTGCTGAGTGTATCCATGGCCTGCCTAATAAGCAATTGTAGGAAGGCTTGATA
71982871 TTAATCACTAAGAAAT
131 TTAATCACTAAGAAAT
*
71982887 CTCCTCCGTATTGATGGTTATTAACCGTCCATCGGTCACTAGTTTCAATTTTTGGTGCAACGACG
1 CTCCTCCGTATTGATGGTTATTAACCGTCCATCGGTCACTAGTTTCAATTTCTGGTGCAACGACG
71982952 AAGGCACCGCTCCTGCTGAGTGTATCCATGGCCTGCCTAATAAGCAATTGTAGGAAGGCTTGATA
66 AAGGCACCGCTCCTGCTGAGTGTATCCATGGCCTGCCTAATAAGCAATTGTAGGAAGGCTTGATA
71983017 TTAATCACTAAGAAAT
131 TTAATCACTAAGAAAT
* *
71983033 CTACTTCGTAT
1 CTCCTCCGTAT
71983044 ATGTTTGGCC
Statistics
Matches: 152, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
146 152 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (146 bp):
CTCCTCCGTATTGATGGTTATTAACCGTCCATCGGTCACTAGTTTCAATTTCTGGTGCAACGACG
AAGGCACCGCTCCTGCTGAGTGTATCCATGGCCTGCCTAATAAGCAATTGTAGGAAGGCTTGATA
TTAATCACTAAGAAAT
Found at i:71987409 original size:31 final size:32
Alignment explanation
Indices: 71987370--71987453 Score: 95
Period size: 31 Copynumber: 2.7 Consensus size: 32
71987360 ATGTTTGGGT
*
71987370 TAGG-ACTAAAATT-TCAAATTTTGAAAAGTA
1 TAGGAACTAAAATTATCAAATTTTAAAAAGTA
*
71987400 TAGGAACTAAAATTGA-CCAA-TTTAAAAAGTA
1 TAGGAACTAAAATT-ATCAAATTTTAAAAAGTA
*
71987431 CAGGAACTAAAATTAATCAAATT
1 TAGGAACTAAAATT-ATCAAATT
71987454 AAACTTTAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
30 4 0.09
31 33 0.75
32 6 0.14
33 1 0.02
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.29
Consensus pattern (32 bp):
TAGGAACTAAAATTATCAAATTTTAAAAAGTA
Found at i:71993876 original size:38 final size:37
Alignment explanation
Indices: 71993818--71993893 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 37
71993808 ATACTTAAAA
* *
71993818 AGAAAATTCAATGAGTCATACCTTCCCATAAATATTCT
1 AGAAAATTCAACGAGCCATACCTTCCC-TAAATATTCT
71993856 AGAAAATTCAACGAGCCATACCTTCCCTAAATATTCT
1 AGAAAATTCAACGAGCCATACCTTCCCTAAATATTCT
71993893 A
1 A
71993894 ACATATGTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 11 0.31
38 25 0.69
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (37 bp):
AGAAAATTCAACGAGCCATACCTTCCCTAAATATTCT
Found at i:71995424 original size:15 final size:16
Alignment explanation
Indices: 71995406--71995445 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
71995396 CCATATTGAA
*
71995406 TATTTTTATAT-TATT
1 TATTTTTATATATAAT
71995421 TATTTTTA-ATATAAT
1 TATTTTTATATATAAT
71995436 TATTTTTATA
1 TATTTTTATA
71995446 ATTTTCTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 2 0.09
15 19 0.86
16 1 0.05
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTTTATATATAAT
Found at i:71995472 original size:15 final size:15
Alignment explanation
Indices: 71995452--71995485 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
71995442 TATAATTTTC
* *
71995452 TTTTAATGTTTAAAA
1 TTTTAATATCTAAAA
71995467 TTTTAATATCTAAAA
1 TTTTAATATCTAAAA
71995482 TTTT
1 TTTT
71995486 CATAAATCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (15 bp):
TTTTAATATCTAAAA
Found at i:71995596 original size:25 final size:25
Alignment explanation
Indices: 71995566--71995616 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
71995556 TACTTAACAT
71995566 TTTAAAAATTTTCATTCAAACATAC
1 TTTAAAAATTTTCATTCAAACATAC
71995591 TTTAAAAATTTTCATTCAAACATAC
1 TTTAAAAATTTTCATTCAAACATAC
71995616 T
1 T
71995617 CTAATTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (25 bp):
TTTAAAAATTTTCATTCAAACATAC
Found at i:71995665 original size:23 final size:23
Alignment explanation
Indices: 71995622--71995665 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
71995612 ATACTCTAAT
**
71995622 TTTTTTTTATATTAGGTTATAGA
1 TTTTTTTTATATTAAATTATAGA
71995645 TTTTTTTTAT-TTAAATATATA
1 TTTTTTTTATATTAAAT-TATA
71995666 TATTAGGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.64
Consensus pattern (23 bp):
TTTTTTTTATATTAAATTATAGA
Found at i:71997110 original size:21 final size:21
Alignment explanation
Indices: 71997084--71997126 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
71997074 CATCTTGGTT
71997084 AATGTCATATGTTAGTCCTAC
1 AATGTCATATGTTAGTCCTAC
71997105 AATGTCATATGTTAGTCCTAC
1 AATGTCATATGTTAGTCCTAC
71997126 A
1 A
71997127 CTGTATACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (21 bp):
AATGTCATATGTTAGTCCTAC
Found at i:71999973 original size:20 final size:20
Alignment explanation
Indices: 71999936--71999992 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
71999926 ATTTATCATT
*
71999936 ATTATTATTCTATCAAATTATA
1 ATTATTA-T-TATTAAATTATA
*
71999958 ATT-TATATTATTAAATTATG
1 ATTAT-TATTATTAAATTATA
71999978 ATTATTATTATTAAA
1 ATTATTATTATTAAA
71999993 AATAAATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
20 23 0.74
21 3 0.10
22 5 0.16
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (20 bp):
ATTATTATTATTAAATTATA
Found at i:72000286 original size:13 final size:14
Alignment explanation
Indices: 72000268--72000314 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
72000258 TTATTAAGTT
72000268 AATAAAATAAAAG-
1 AATAAAATAAAAGA
* *
72000281 AATAAAAGAAATGA
1 AATAAAATAAAAGA
72000295 AATAAAAT-AAAGA
1 AATAAAATAAAAGA
*
72000308 AACAAAA
1 AATAAAA
72000315 CAAAGTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
13 21 0.75
14 7 0.25
ACGTcount: A:0.77, C:0.02, G:0.09, T:0.13
Consensus pattern (14 bp):
AATAAAATAAAAGA
Found at i:72004520 original size:42 final size:42
Alignment explanation
Indices: 72004471--72004585 Score: 178
Period size: 42 Copynumber: 2.7 Consensus size: 42
72004461 CTTCGTTTTC
**
72004471 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCATATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCATAT-A
* *
72004514 T-GATGCCATAGCCCAGCTATGGTCTTACACATTTTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCATATA
72004555 TCGATGCCATAGCCCAACTATGGTCTTACAC
1 TCGATGCCATAGCCCAACTATGGTCTTACAC
72004586 GAATTAAATA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 2 0.03
42 63 0.95
43 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCATATA
Found at i:72004739 original size:31 final size:31
Alignment explanation
Indices: 72004704--72004885 Score: 283
Period size: 31 Copynumber: 5.8 Consensus size: 31
72004694 CTTGTCACTT
*
72004704 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
72004735 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
72004766 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
72004797 GTAGCTGAAGAGCTACCACTTTTCACTGATCAG
1 GTAGCCG-A-AGCTACCACTTTTCACTGATCAG
*
72004830 GTAGCTGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
72004861 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
72004886 TGTCATTTAT
Statistics
Matches: 143, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
31 112 0.78
32 1 0.01
33 30 0.21
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:72004822 original size:64 final size:63
Alignment explanation
Indices: 72004704--72004885 Score: 296
Period size: 64 Copynumber: 2.9 Consensus size: 63
72004694 CTTGTCACTT
* * *
72004704 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCG-GAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAGAGCTACCACTTTTCACTGATCAG
*
72004766 GTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCTGAAGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTG-AGAGCTACCACTTTTCACTGATCAG
*
72004830 GTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCTGA-AGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAGAGCTACCACTTTTCACT
72004886 TGTCATTTAT
Statistics
Matches: 112, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
62 52 0.46
63 1 0.01
64 59 0.53
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (63 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAGAGCTACCACTTTTCACTGATCAG
Found at i:72004823 original size:95 final size:95
Alignment explanation
Indices: 72004712--72004885 Score: 294
Period size: 95 Copynumber: 1.8 Consensus size: 95
72004702 TTGTAGCCGA
* * *
72004712 AGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCATTTTTCACTGATCAGGTAGCCGGAGC
1 AGCTACCACTATTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGC
72004777 TACCACTTTTCACTGATCAGGTAGCTGAAG
66 TACCACTTTTCACTGATCAGGTAGCTGAAG
* * *
72004807 AGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGC
1 AGCTACCACTATTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGC
72004872 TACCACTTTTCACT
66 TACCACTTTTCACT
72004886 TGTCATTTAT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 73 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (95 bp):
AGCTACCACTATTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGC
TACCACTTTTCACTGATCAGGTAGCTGAAG
Found at i:72004969 original size:50 final size:51
Alignment explanation
Indices: 72004861--72004989 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
72004851 CACTGATCAG
* * *
72004861 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTATCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTATCATTGATCAGATAAGT
* *
72004912 GTCGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTATCATTGATCAGATAAGT
72004962 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
72004990 TGTCATGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 44 0.63
51 26 0.37
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTATCATTGATCAGATAAGT
Found at i:72007996 original size:131 final size:132
Alignment explanation
Indices: 72007846--72008174 Score: 322
Period size: 134 Copynumber: 2.5 Consensus size: 132
72007836 AATGAAAAAA
* *** * *
72007846 CACAACCCAGCACGATAGGGCACAATTCTCAAATCG-CGAAATATTGAACATCGTCTTCGTTTTT
1 CACAACCCAGCACGATAGGGCACAATTCTCAAATCGTC-AAACACCAAACATCGCCTTCGTTTTA
** * * * *
72007910 AGGTATATT-TT-ATAAACATGAGTGAGAATATAAAGGAATATTCGATCGTTTTGAGCAAACGAG
65 AAATAT-TTCTTAAAAAACATGAGTGAAAACATAAAGGAATATTCGATCGTTTTGACCAAACGAG
72007973 AAAT
129 AAAT
** * * * * * *
72007977 CACAACCCAGCACGATAGGGCATGATTCTCGAATTGTCAAACGCCAAATATTGCCTTTGTTTTAA
1 CACAACCCAGCACGATAGGGCACAATTCTCAAATCGTCAAACACCAAACATCGCCTTCGTTTTAA
* * *
72008042 AATGTTTCCTTAAAAAAACATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGACCAAACGAG
66 AATATTT-CTT-AAAAAACATGAGTGAAAACATAAAGGAATATTCGATCGTTTTGACCAAACGAG
72008107 AAAT
129 AAAT
** * * * * * *
72008111 CACAACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACACCGAGCATTGCCTTCGTTTTA
1 CACAACCCAGCACGATAGGGCACAATTCTCAAATCGTCAAACACCAAACATCGCCTTCGTTTTA
72008175 GAGGGTTTTT
Statistics
Matches: 164, Mismatches: 29, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
130 2 0.01
131 51 0.31
132 3 0.02
134 108 0.66
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (132 bp):
CACAACCCAGCACGATAGGGCACAATTCTCAAATCGTCAAACACCAAACATCGCCTTCGTTTTAA
AATATTTCTTAAAAAACATGAGTGAAAACATAAAGGAATATTCGATCGTTTTGACCAAACGAGAA
AT
Found at i:72008164 original size:134 final size:134
Alignment explanation
Indices: 72007923--72008174 Score: 405
Period size: 134 Copynumber: 1.9 Consensus size: 134
72007913 TATATTTTAT
* * *
72007923 AAACATGAGTGAGAATATAAAGGAATATTCGATCGTTTTGAGCAAACGAGAAATCACAACCCAGC
1 AAACATGAGTGAAAACATAAAGGAATATTCGATCGTTTTGACCAAACGAGAAATCACAACCCAGC
* * * *
72007988 ACGATAGGGCATGATTCTCGAATTGTCAAACGCCAAATATTGCCTTTGTTTTAAAATGTTTCCTT
66 ACGATAGGGCATGATTCCCGAATTGTCAAACACCAAACATTGCCTTCGTTTTAAAATGTTTCCTT
72008053 AAAA
131 AAAA
* *
72008057 AAACATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGACCAAACGAGAAATCACAACCCAGC
1 AAACATGAGTGAAAACATAAAGGAATATTCGATCGTTTTGACCAAACGAGAAATCACAACCCAGC
* *
72008122 ACGATAGGGCATGATTCCCGAATTGTCAAACACCGAGCATTGCCTTCGTTTTA
66 ACGATAGGGCATGATTCCCGAATTGTCAAACACCAAACATTGCCTTCGTTTTA
72008175 GAGGGTTTTT
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
134 107 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (134 bp):
AAACATGAGTGAAAACATAAAGGAATATTCGATCGTTTTGACCAAACGAGAAATCACAACCCAGC
ACGATAGGGCATGATTCCCGAATTGTCAAACACCAAACATTGCCTTCGTTTTAAAATGTTTCCTT
AAAA
Found at i:72008978 original size:44 final size:44
Alignment explanation
Indices: 72008930--72009520 Score: 921
Period size: 44 Copynumber: 13.4 Consensus size: 44
72008920 TGCTCTTTGT
* *
72008930 CAATACAGAGACGCCAAATCTGCTATCTTTGATCTGCTCCCCGC
1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* * *
72008974 CAATACAGAGACGCCAAATCTGCTATATTCGATTTGCTCTCCAC
1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
*
72009018 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTTCGC
1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* * *
72009062 CAATACAGAGATGCCAAATCTGCGATCTTCGATCTGCTCTCTGC
1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* * * *
72009106 CAATACAGATATGCCAAATCTGCGATCTTCGATCTACTCTCCGC
1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* *
72009150 CAATACAGAGATGCCAAATCTGCTATCTTCGATCTACTCTCCGC
1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* *
72009194 CAATACAGAGATGCCAAATCTGCGATCTTCGATCTGCTCTCCGC
1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* *
72009238 CAATAAAGAGACGCCAAATCTGATATCTTCGATCTGCTCTCCGC
1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* * *
72009282 TAATACAGAGACGCCAAATCTGATATCTTCGATCTACTCTCCGC
1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* * * *
72009326 CAATACAGAGATGTCAAATCTACTATCTTCGATCTACTCTCCGC
1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
72009370 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
72009414 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
** *
72009458 CAATACAGAGATACGAAATCTGCTATCTTCGATCTGCTCTCCGC
1 CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
72009502 CAATACAGAGACGCCAAAT
1 CAATACAGAGACGCCAAAT
72009521 TTGTAAGATT
Statistics
Matches: 505, Mismatches: 42, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 505 1.00
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (44 bp):
CAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
Found at i:72021473 original size:135 final size:135
Alignment explanation
Indices: 72021292--72021544 Score: 398
Period size: 135 Copynumber: 1.9 Consensus size: 135
72021282 TATATTTTAT
* * * *
72021292 AAACATGAGTGAAAATATAAATGAATGTTCGATCGTTTTGAGCAAACGAGAAATCACAACCCAGC
1 AAACATGAGTGAAAACATAAAGGAATATTCGATCGTTTTGACCAAACGAGAAATCACAACCCAGC
* * * *
72021357 ACGATAGGGCATGATTCTCGAATTGTCAAACGCCAAATATTGCCTTTGTTTTAAAATGTTTCCTT
66 ACGATAGGACATGATTCCCGAATTGTCAAACACCAAATATTGCCTTCGTTTTAAAATGTTTCCTT
72021422 AAAAA
131 AAAAA
* *
72021427 AAACATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGACCAAACGAGAAATCACAACCCAGC
1 AAACATGAGTGAAAACATAAAGGAATATTCGATCGTTTTGACCAAACGAGAAATCACAACCCAGC
* *
72021492 ACGATAGGACATGATTCCCGAATTGTCAAACACCGAGTATTGCCTTCGTTTTA
66 ACGATAGGACATGATTCCCGAATTGTCAAACACCAAATATTGCCTTCGTTTTA
72021545 GAGGGTTTTT
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
135 106 1.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.26
Consensus pattern (135 bp):
AAACATGAGTGAAAACATAAAGGAATATTCGATCGTTTTGACCAAACGAGAAATCACAACCCAGC
ACGATAGGACATGATTCCCGAATTGTCAAACACCAAATATTGCCTTCGTTTTAAAATGTTTCCTT
AAAAA
Found at i:72022213 original size:19 final size:20
Alignment explanation
Indices: 72022186--72022241 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 20
72022176 TGAATTATGG
*
72022186 AATATTGAATATTGTTTG-A
1 AATACTGAATATTGTTTGTA
* *
72022205 AATACTGAAT-TAGATTGTA
1 AATACTGAATATTGTTTGTA
72022224 AAGTTACTGAATATTGTT
1 AA--TACTGAATATTGTT
72022242 ATGTGTACTG
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 5 0.18
19 12 0.43
21 8 0.29
22 3 0.11
ACGTcount: A:0.38, C:0.04, G:0.16, T:0.43
Consensus pattern (20 bp):
AATACTGAATATTGTTTGTA
Found at i:72022584 original size:45 final size:45
Alignment explanation
Indices: 72022480--72022585 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
72022470 CGACTACTGT
* * *
72022480 TACTGTTACAGTTACTGTTATCGATTCGACACTTTGTGTGTCGAA
1 TACTGATACTGTTACTGTTATCGATTCAACACTTTGTGTGTCGAA
*
72022525 TACT-ATTA-TCGTTACTGTTA-CAGATTCAACACTTTGTGTGTTGAA
1 TACTGA-TACT-GTTACTGTTATC-GATTCAACACTTTGTGTGTCGAA
72022570 TACTGATACTGTTACT
1 TACTGATACTGTTACT
72022586 TCTACCGTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
44 1 0.02
45 49 0.94
46 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.42
Consensus pattern (45 bp):
TACTGATACTGTTACTGTTATCGATTCAACACTTTGTGTGTCGAA
Found at i:72029665 original size:21 final size:22
Alignment explanation
Indices: 72029626--72029667 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
72029616 AACATTAAAA
*
72029626 AAATATATTTTTATAATTTTTT
1 AAATATATTTTAATAATTTTTT
*
72029648 AAATA-ATTTTAATGATTTTT
1 AAATATATTTTAATAATTTTT
72029668 ATTTTTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
AAATATATTTTAATAATTTTTT
Found at i:72035680 original size:3 final size:3
Alignment explanation
Indices: 72035639--72035737 Score: 100
Period size: 3 Copynumber: 32.7 Consensus size: 3
72035629 TGAATAAAGC
*
72035639 AAT ATAT AA- AAT CAAT AA- AACT AAT AAA AAT AA- AAT AAT AAT AA-
1 AAT A-AT AAT AAT -AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT
72035683 AGA- AAT AAAT AAAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 A-AT AAT -AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
72035730 AAT AAT AA
1 AAT AAT AA
72035738 AAGGAAAAGA
Statistics
Matches: 85, Mismatches: 2, Indels: 18
0.81 0.02 0.17
Matches are distributed among these distances:
2 8 0.09
3 62 0.73
4 15 0.18
ACGTcount: A:0.70, C:0.02, G:0.01, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:72036693 original size:18 final size:18
Alignment explanation
Indices: 72036672--72036890 Score: 73
Period size: 18 Copynumber: 11.7 Consensus size: 18
72036662 GAACAATTAT
*
72036672 TTATTCAATAACAGTCAG
1 TTATTCAATAACAATCAG
** * *
72036690 TTATTCGGTAACAATTAA
1 TTATTCAATAACAATCAG
* *
72036708 TTATTCAATAATAACCAG
1 TTATTCAATAACAATCAG
* *
72036726 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCA--AT--AAC-A---ATCAG
* * * *
72036752 TTATCCAGTAACAGTCAA
1 TTATTCAATAACAATCAG
*
72036770 TTATTCAGTAA-AATCAG
1 TTATTCAATAACAATCAG
* * *
72036787 GTATTCAGTAACAATTAAG
1 TTATTCAATAACAA-TCAG
* *
72036806 TTATTCAGTAACAGTCA-
1 TTATTCAATAACAATCAG
* *
72036823 TTCATTCAGTGACAATCAG
1 TT-ATTCAATAACAATCAG
* ** *
72036842 TTATTCAGTAATGATCAA
1 TTATTCAATAACAATCAG
* * *
72036860 TTATTCAGTAATATTCAG
1 TTATTCAATAACAATCAG
*
72036878 TTATTCAGTAACA
1 TTATTCAATAACA
72036891 GTCTAATATC
Statistics
Matches: 150, Mismatches: 39, Indels: 24
0.70 0.18 0.11
Matches are distributed among these distances:
17 16 0.11
18 100 0.67
19 17 0.11
20 2 0.01
21 1 0.01
22 3 0.02
23 1 0.01
24 1 0.01
26 9 0.06
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (18 bp):
TTATTCAATAACAATCAG
Found at i:72036727 original size:36 final size:36
Alignment explanation
Indices: 72036663--72036731 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
72036653 TAACAATCAG
* **
72036663 AACAATTATTTATTCAATAACAGTCAGTTATTCGGT
1 AACAATTAATTATTCAATAACAACCAGTTATTCGGT
*
72036699 AACAATTAATTATTCAATAATAACCAGTTATTC
1 AACAATTAATTATTCAATAACAACCAGTTATTC
72036732 AGTATCGATC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (36 bp):
AACAATTAATTATTCAATAACAACCAGTTATTCGGT
Found at i:72036815 original size:54 final size:54
Alignment explanation
Indices: 72036752--72036948 Score: 193
Period size: 54 Copynumber: 3.6 Consensus size: 54
72036742 AATTGATCGG
* *
72036752 TTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGGTATTCAGTAACAATTAA
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCAGATATTCAGTAACAATCAA
* * * **
72036805 GTTATTCAGTAACAGTC-ATTCATTCAGTGACAATCAGTTATTCAGTAATGATCAA
1 -TTATCCAGTAACAGTCAATT-ATTCAGTAACAATCAGATATTCAGTAACAATCAA
* * * * * * *
72036860 TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTA-ATATCCAGTAACAGTCAA
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATC-AGATATTCAGTAACAATCAA
* * *
72036914 TTATCCAGTAACAGTTAATTATTCAATAATAATCA
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCA
72036949 ATTATTTTAT
Statistics
Matches: 115, Mismatches: 24, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
53 4 0.03
54 88 0.77
55 23 0.20
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.35
Consensus pattern (54 bp):
TTATCCAGTAACAGTCAATTATTCAGTAACAATCAGATATTCAGTAACAATCAA
Found at i:72036934 original size:72 final size:70
Alignment explanation
Indices: 72036753--72036954 Score: 215
Period size: 72 Copynumber: 2.8 Consensus size: 70
72036743 ATTGATCGGT
* ** * *
72036753 TATCCAGTAACAGTCAATTATTCAGTAAAATCAGGTATTCAGTAACAATTAAGTTATTCAGTAAC
1 TATCCAGTAACAGTCAATTATTCAGTAAAGTCAATTATTCAGTAA-TATTCAGTTATTCAGTAAC
*
72036818 AGTCAT
65 AGTCAA
* * * * *
72036824 TCATTCAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAATATTCAGTTATTCAGTAA
1 T-ATCCAGTAACAGTCAATTATTCAGTAAAG-TCAATTATTCAGTAATATTCAGTTATTCAGTAA
72036889 CAGTCTAA
64 CAGTC-AA
* * * * *
72036897 TATCCAGTAACAGTCAATTATCCAGTAACAGTTAATTATTCAATAATAATCAATTATT
1 TATCCAGTAACAGTCAATTATTCAGTAA-AGTCAATTATTCAGTAATATTCAGTTATT
72036955 TTATACCTTT
Statistics
Matches: 106, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
71 1 0.01
72 89 0.84
73 16 0.15
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (70 bp):
TATCCAGTAACAGTCAATTATTCAGTAAAGTCAATTATTCAGTAATATTCAGTTATTCAGTAACA
GTCAA
Found at i:72036951 original size:18 final size:18
Alignment explanation
Indices: 72036752--72036954 Score: 169
Period size: 18 Copynumber: 11.3 Consensus size: 18
72036742 AATTGATCGG
* *
72036752 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAA
*
72036770 TTATTCAGTAA-AATCAG
1 TTATTCAGTAACAATCAA
* *
72036787 GTATTCAGTAACAATTAA
1 TTATTCAGTAACAATCAA
*
72036805 GTTATTCAGTAACAGTC-A
1 -TTATTCAGTAACAATCAA
* *
72036823 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAATCAA
**
72036842 TTATTCAGTAATGATCAA
1 TTATTCAGTAACAATCAA
* * *
72036860 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAATCAA
*
72036878 TTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAATC-AA
* *
72036897 -TATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAA
* * *
72036914 TTATCCAGTAACAGTTAA
1 TTATTCAGTAACAATCAA
* *
72036932 TTATTCAATAATAATCAA
1 TTATTCAGTAACAATCAA
72036950 TTATT
1 TTATT
72036955 TTATACCTTT
Statistics
Matches: 150, Mismatches: 29, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
17 18 0.12
18 116 0.77
19 16 0.11
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:72038981 original size:31 final size:32
Alignment explanation
Indices: 72038925--72038987 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
72038915 CACACTTGTC
*
72038925 ATAATTTAATATATTTATTACATAAAAATCTT
1 ATAATATAATATATTTATTACATAAAAATCTT
*
72038957 ATAATATAAT-TATTTAATTA-ATAAATATCTT
1 ATAATATAATATATTT-ATTACATAAAAATCTT
72038988 TTGTAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 15 0.54
32 13 0.46
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (32 bp):
ATAATATAATATATTTATTACATAAAAATCTT
Found at i:72042299 original size:152 final size:152
Alignment explanation
Indices: 72041991--72042289 Score: 391
Period size: 152 Copynumber: 2.0 Consensus size: 152
72041981 GAGCGTTACA
* * * *
72041991 TTATTCCATTTTTTTATTTTATTTCCAAAACGAGTATTAAAATTAAATAAAATCTATTTCGAGAT
1 TTATTCAATTTTTTTATTTTATTACCAAAACGAATATTAAAATCAAATAAAATCTATTTCGAGAT
** * * *
72042056 TTATTCCCGCCGTTCAGCAGATTTTATTCCATAATGATTTTGTTCCCAAAACGAGTATTAAAATT
66 TTATTCCCGCCGTTCAAAAGATTTTATTACATAATGATTTTATTCCCAAAACGAGTATAAAAATT
*
72042121 AAATAAAATTTGTTTCAGAATT
131 AAATAAAATATGTTTCAGAATT
* * * * *
72042143 TTATTCAATTTTTTTATTTTGTTACCAAAATGAATATTAAAATCAAATAAAATTTGTTTCGGGAT
1 TTATTCAATTTTTTTATTTTATTACCAAAACGAATATTAAAATCAAATAAAATCTATTTCGAGAT
* * * ** * *
72042208 TTATTTCTGCCGTTTAAAAGATTTTATTACATTCTTTATTTTATTTCCAAAACGAGTATAAAAAT
66 TTATTCCCGCCGTTCAAAAGATTTTATTACA-TAATGATTTTATTCCCAAAACGAGTATAAAAAT
72042273 TAAATAAAATATGTTTC
130 TAAATAAAATATGTTTC
72042290 GAGATTTATT
Statistics
Matches: 124, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
152 81 0.65
153 43 0.35
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.44
Consensus pattern (152 bp):
TTATTCAATTTTTTTATTTTATTACCAAAACGAATATTAAAATCAAATAAAATCTATTTCGAGAT
TTATTCCCGCCGTTCAAAAGATTTTATTACATAATGATTTTATTCCCAAAACGAGTATAAAAATT
AAATAAAATATGTTTCAGAATT
Found at i:72042301 original size:87 final size:87
Alignment explanation
Indices: 72042155--72042409 Score: 316
Period size: 87 Copynumber: 2.9 Consensus size: 87
72042145 ATTCAATTTT
* * * * *
72042155 TTTATTTTGTTACCAAAATGAATATTAAAATCAAATAAAATTTGTTTCGGGATTTATTTCTGCCG
1 TTTATTTTGTTACCAAAACGAGTATTAAAATTAAATAAAATATGTTTCGAGATTTATTTCTGCCG
72042220 TTTAAAAGATTTTATTACATTC
66 TTTAAAAGATTTTATTACATTC
* * * * *
72042242 TTTATTTTATTTCCAAAACGAGTATAAAAATTAAATAAAATATGTTTCGAGATTTATTTCCGCTG
1 TTTATTTTGTTACCAAAACGAGTATTAAAATTAAATAAAATATGTTTCGAGATTTATTTCTGCCG
* * * *
72042307 TTCAACAGAATTTATTTCATTC
66 TTTAAAAGATTTTATTACATTC
* * *
72042329 TTGATTTTGTTACC-AAACGAGAAATTAAAATTAAATAAAATCTGTTTCGAGATTTATTTCAT-C
1 TTTATTTTGTTACCAAAACGAG-TATTAAAATTAAATAAAATATGTTTCGAGATTTATTTC-TGC
*
72042392 CATTTAAAAGATTTTATT
64 CGTTTAAAAGATTTTATT
72042410 CAATTTTAAT
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
86 7 0.05
87 133 0.95
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.43
Consensus pattern (87 bp):
TTTATTTTGTTACCAAAACGAGTATTAAAATTAAATAAAATATGTTTCGAGATTTATTTCTGCCG
TTTAAAAGATTTTATTACATTC
Found at i:72042548 original size:83 final size:82
Alignment explanation
Indices: 72042350--72042710 Score: 282
Period size: 83 Copynumber: 4.5 Consensus size: 82
72042340 ACCAAACGAG
* * * *
72042350 AAATTAAAATTAAA-T-AA-AATCTGTTTCGAGATTTATTTCATCCATTTAA-AAGATTTTATTC
1 AAATTAAAATTAAATTAAATAATCTATTTCGAGATTTATTCCCTCCGTTTAACAA-ATTTTATTC
* *
72042411 AATTTTAATTTGGTTTCC
65 AATTTTGATTTTGTTTCC
* ***
72042429 AAATTAGAATTAAATTTTCTAATCTATTTCGAGATTTATTCCCTCCGTTTAACAAATTTTATTCA
1 AAATTAAAATTAAATTAAATAATCTATTTCGAGATTTATTCCCTCCGTTTAACAAATTTTATTCA
* *
72042494 ATTTTGTTTTTTGTTCCC
66 ATTTTG-ATTTTGTTTCC
* *
72042512 AAATTAAAATTAAATTAAATAATCTGTTTCGAGATTTA-TCCCTGCC-TGTTAACAGATTTTATT
1 AAATTAAAATTAAATTAAATAATCTATTTCGAGATTTATTCCCT-CCGT-TTAACAAATTTTA-T
* * **
72042575 TCGATCTTGATTTTGTTTAT
63 TCAATTTTGATTTTGTTTCC
* * * * * * *
72042595 AAATGAACACTT-AATCAAATAATTCTATTTCGATATTTATTCCCGCCGCTTAACAGA--TT-TT
1 AAATTAA-AATTAAATTAAATAA-TCTATTTCGAGATTTATTCCCTCCGTTTAACAAATTTTATT
72042656 --ATTTTGATTTTGTTTCC
64 CAATTTTGATTTTGTTTCC
* * **
72042673 AAA-CAAGATTTTATTAAATAATTCTATTTC-AGGATTTA
1 AAATTAAAATTAAATTAAATAA-TCTATTTCGA-GATTTA
72042711 ATATTGCCGT
Statistics
Matches: 229, Mismatches: 39, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
76 3 0.01
77 24 0.10
78 17 0.07
79 13 0.06
80 3 0.01
82 51 0.22
83 79 0.34
84 35 0.15
85 4 0.02
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.46
Consensus pattern (82 bp):
AAATTAAAATTAAATTAAATAATCTATTTCGAGATTTATTCCCTCCGTTTAACAAATTTTATTCA
ATTTTGATTTTGTTTCC
Found at i:72045556 original size:87 final size:87
Alignment explanation
Indices: 72045454--72046276 Score: 682
Period size: 87 Copynumber: 9.6 Consensus size: 87
72045444 ATTTGAAATA
* * * * * * **
72045454 TAAATAAAATTCGTTTCAGGATTTATTCCCACCATCCAACGAATTTTATTCTATTTTGGATTTTA
1 TAAATAAAATCCGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCTATTTTTTATTTTA
72045519 TTTCCAAACGAGAAATTAAAGT
66 TTTCCAAACGAGAAATTAAAGT
* **
72045541 TAAATAAAATCCGTTTCGGGATTTATTCCTGCCGTTCAACAAATTTTATT-TCATTTTTTATTTT
1 TAAATAAAATCCGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCT-ATTTTTTATTTT
72045605 ATTTCCAAAC-ATGAAATTAAAGT
65 ATTTCCAAACGA-GAAATTAAAGT
* ** **
72045628 TAAATAGAATATGTTTCGGGATTTATTCCCGTTGTTCAACGGATTTTATTAC-ATTTTTTATTTT
1 TAAATAAAATCCGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATT-CTATTTTTTATTTT
72045692 ATTTCCAAAC-AGGAAATTAAAGT
65 ATTTCCAAACGA-GAAATTAAAGT
* * * * * *
72045715 TAAATAGAATCTGTTTCAGGAGTTATTACCGTCGTTCAACGGATTTTATTACT-TTTTTTATTTT
1 TAAATAAAATCCGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATT-CTATTTTTTATTTT
*
72045779 ATTTCCAAACGAAAAATTAAAGT
65 ATTTCCAAACGAGAAATTAAAGT
* * *
72045802 TAAATAAAATCCGTTTCGGGATTTATTCCTGCTGTTTAACGGATTTTATTCTATTTTTTATTTTA
1 TAAATAAAATCCGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCTATTTTTTATTTTA
* * *
72045867 TTTCAAAACGAGTAA-TAAAAT
66 TTTCCAAACGAGAAATTAAAGT
* * ** *
72045888 TAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTGT-AATAGATTTTATTCCATTTTTTTATTT
1 TAAATAAAATCCGTTTCGGGATTTATTCCCGCCGT-TCAACGGATTTTATTCTA-TTTTTTATTT
* * * *
72045952 TGTTTCCAAAACAAG-TATTAAAAT
64 TATTTCC-AAACGAGAAATTAAAGT
* ** * * * *
72045976 AAAATAAAATTTGTTTCGGGATTTATTTCCGCCGCTCAATGGATATTATTCTATTTTTTTATTTT
1 TAAATAAAATCCGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCTA-TTTTTTATTTT
* * *
72046041 ATTTCCGAAACAAG-TATTAAAAT
65 ATTTCC-AAACGAGAAATTAAAGT
** *
72046064 TAAATAAAATATGTTTCGGGATTTATT--C-TCG--C--C-G-TTTTATTCTA-TTTTTATTTTG
1 TAAATAAAATCCGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCTATTTTTTATTTT-
* * ** *
72046119 TTTTCAAAACGA-TTATTAAAAT
65 ATTTCCAAACGAGAAATTAAAGT
*** ** * ** * ** **
72046141 TAAATAAAATATATTTTAGAATTTATTTTCGCCGTTTAATAGATTTTATTC-CGTTTTTATTTTA
1 TAAATAAAATCCGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCTATTTTTTATTTTA
* * *
72046205 TTCCCAAAACGAG-TATTAAAAT
66 TTTCC-AAACGAGAAATTAAAGT
* * * ** *
72046227 TATATTAAATCTGTTTCGGGATTTATTCCCGTTGTTCAACAGATTTTATT
1 TAAATAAAATCCGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATT
72046277 TCATTCTTAA
Statistics
Matches: 622, Mismatches: 88, Indels: 53
0.82 0.12 0.07
Matches are distributed among these distances:
77 47 0.08
78 4 0.01
79 10 0.02
80 3 0.00
83 1 0.00
85 6 0.01
86 126 0.20
87 311 0.50
88 114 0.18
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.45
Consensus pattern (87 bp):
TAAATAAAATCCGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCTATTTTTTATTTTA
TTTCCAAACGAGAAATTAAAGT
Found at i:72045763 original size:174 final size:173
Alignment explanation
Indices: 72045454--72046322 Score: 756
Period size: 174 Copynumber: 5.1 Consensus size: 173
72045444 ATTTGAAATA
* * ** * * **
72045454 TAAATAAAAT-TCGTTTCAGGATTTATTCCCACCATCCAACGAATTTTATTCTATTTTGGATTTT
1 TAAATAAAATAT-GTTTCGGGATTTATTCCCGCTGTTCAACGGATTTTATTCTATTTTTTATTTT
* * *
72045518 ATTTCCAAACGAGAAATTAAAGTTAAATAAAATCCGTTTCGGGATTTATTCCTGCCGTTCAACAA
65 ATTTCCAAACGAGAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTTCAACAG
*
72045583 ATTTTATTTCATTTTTTATTTTATTTCCAAACATGAAATTAAAGT
130 ATTTTATTACATTTTTTATTTTATTTCCAAACA-GAAATTAAAGT
* *
72045628 TAAATAGAATATGTTTCGGGATTTATTCCCGTTGTTCAACGGATTTTATTAC-ATTTTTTATTTT
1 TAAATAAAATATGTTTCGGGATTTATTCCCGCTGTTCAACGGATTTTATT-CTATTTTTTATTTT
* * * * *
72045692 ATTTCCAAAC-AGGAAATTAAAGTTAAATAGAATCTGTTTCAGGAGTTATTACC-GTCGTTCAAC
65 ATTTCCAAACGA-GAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATT-CCTGCCGTTCAAC
* * *
72045755 GGATTTTATTACTTTTTTTATTTTATTTCCAAACGAAAAATTAAAGT
128 AGATTTTATTACATTTTTTATTTTATTTCCAAAC-AGAAATTAAAGT
** * *
72045802 TAAATAAAATCCGTTTCGGGATTTATTCCTGCTGTTTAACGGATTTTATTCTATTTTTTATTTTA
1 TAAATAAAATATGTTTCGGGATTTATTCCCGCTGTTCAACGGATTTTATTCTATTTTTTATTTTA
* * *
72045867 TTTCAAAACGAGTAA-TAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTGT-AATAG
66 TTTCCAAACGAGAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGT-TCAACAG
* * * *
72045930 ATTTTATTCCATTTTTTTATTTTGTTTCCAAAACA-AGTATTAAAAT
130 ATTTTATTACA-TTTTTTATTTTATTTCC-AAACAGA-AATTAAAGT
* * * * * * *
72045976 AAAATAAAATTTGTTTCGGGATTTATTTCCGCCGCTCAATGGATATTATTCTATTTTTTTATTTT
1 TAAATAAAATATGTTTCGGGATTTATTCCCGCTGTTCAACGGATTTTATTCTA-TTTTTTATTTT
* * *
72046041 ATTTCCGAAACAAG-TATTAAAATTAAATAAAATATGTTTCGGGATTTATT-CT--CG--C--C-
65 ATTTCC-AAACGAGAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTTCAACA
* * * *
72046097 G-TTTTATT-C-TATTTTTATTTTGTTTTCAAA-ACGATTATTAAAAT
129 GATTTTATTACAT-TTTTTATTTTATTTCCAAACA-GA-AATTAAAGT
* ** * ** * * ** **
72046141 TAAATAAAATATATTTTAGAATTTATTTTCGCCGTTTAATAGATTTTATTC-CGTTTTTATTTTA
1 TAAATAAAATATGTTTCGGGATTTATTCCCGCTGTTCAACGGATTTTATTCTATTTTTTATTTTA
* * * * * **
72046205 TTCCCAAAACGAG-TATTAAAATTATATTAAATCTGTTTCGGGATTTATTCCCGTTGTTCAACAG
66 TTTCC-AAACGAGAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTTCAACAG
* * * * * * * *
72046269 ATTTTATTTCATTCTTAATCTTGTTGCAAAACTAGAAATTAAAAT
130 ATTTTATTACATTTTTTATTTTATTTCCAAAC-AGAAATTAAAGT
*
72046314 TGAATAAAA
1 TAAATAAAA
72046323 CCTGTAACAA
Statistics
Matches: 577, Mismatches: 86, Indels: 65
0.79 0.12 0.09
Matches are distributed among these distances:
163 55 0.10
164 5 0.01
165 65 0.11
166 2 0.00
167 7 0.01
168 2 0.00
170 1 0.00
171 1 0.00
172 9 0.02
173 80 0.14
174 282 0.49
175 30 0.05
176 38 0.07
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (173 bp):
TAAATAAAATATGTTTCGGGATTTATTCCCGCTGTTCAACGGATTTTATTCTATTTTTTATTTTA
TTTCCAAACGAGAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTTCAACAGA
TTTTATTACATTTTTTATTTTATTTCCAAACAGAAATTAAAGT
Found at i:72045798 original size:261 final size:260
Alignment explanation
Indices: 72045449--72046276 Score: 760
Period size: 261 Copynumber: 3.2 Consensus size: 260
72045439 ATTTTATTTG
* * * * * *
72045449 AAATATAAATAAAAT-TCGTTTCAGGATTTATTCCCACC-ATCCAACGAATTTTATTCTATTTTG
1 AAATA-AAATAAAATCT-GTTTCAGGAGTTATTACCGCCGCT-CAACGGATTTTATTCT-TTTTT
* *
72045512 GATTTTATTTCCAAACGAGAAATTAAAGTTAAATAAAATCCGTTTCGGGATTTATTCCTGCCGTT
62 TATTTTATTTCCAAACGAAAAATTAAAGTTAAATAAAATCCGTTTCGGGATTTATTCCTGCCGTT
* * *
72045577 CAACAAATTTTATT-TCATTTTTTATTTTATTTCCAAAC-ATGAAATTAAAGTTAAATAGAATAT
127 CAACAAATTTTATTCT-ATTTTTTATTTTATTTCAAAACGA-GAAA-TAAAATTAAATAAAATAT
** *
72045640 GTTTCGGGATTTATTCCCGTTGT-TCAACGGATTTTATTACA-TTTTTTATTTTATTTCC-AAAC
189 GTTTCGGGATTTATTCCCGCCGTGT-AACAGATTTTATTACATTTTTTTATTTTATTTCCAAAAC
*
72045702 AGGAAATTA
253 AAG-AATTA
* * * * *
72045711 AAGTTAAATAGAATCTGTTTCAGGAGTTATTACCGTCGTTCAACGGATTTTATTACTTTTTTTAT
1 AAATAAAATAAAATCTGTTTCAGGAGTTATTACCGCCGCTCAACGGATTTTATT-CTTTTTTTAT
* *
72045776 TTTATTTCCAAACGAAAAATTAAAGTTAAATAAAATCCGTTTCGGGATTTATTCCTGCTGTTTAA
65 TTTATTTCCAAACGAAAAATTAAAGTTAAATAAAATCCGTTTCGGGATTTATTCCTGCCGTTCAA
** * *
72045841 CGGATTTTATTCTATTTTTTATTTTATTTCAAAACGAGTAATAAAATTAAATAAAATCTGTTTCG
130 CAAATTTTATTCTATTTTTTATTTTATTTCAAAACGAGAAATAAAATTAAATAAAATATGTTTCG
* * * * *
72045906 GGATTTATTCCTGCCGTGTAATAGATTTTATTCCATTTTTTTATTTTGTTTCCAAAACAAGTATT
195 GGATTTATTCCCGCCGTGTAACAGATTTTATTACATTTTTTTATTTTATTTCCAAAACAAGAATT
72045971 A
260 A
* * * * * *
72045972 AAATAAAATAAAATTTGTTTCGGGATTTATTTCCGCCGCTCAATGGATATTATTCTATTTTTTTA
1 AAATAAAATAAAATCTGTTTCAGGAGTTATTACCGCCGCTCAACGGATTTTATTC--TTTTTTTA
** * **
72046037 TTTTATTTCCGAAAC-AAGTATTAAAATTAAATAAAATATGTTTCGGGATTTATT-CT--CG--C
64 TTTTATTTCC-AAACGAAAAATTAAAGTTAAATAAAATCCGTTTCGGGATTTATTCCTGCCGTTC
* * ** * *
72046096 --C--GTTTTATTCTA-TTTTTATTTTGTTTTCAAAACGATTATTAAAATTAAATAAAATATATT
128 AACAAATTTTATTCTATTTTTTATTTT-ATTTCAAAACGAGAAATAAAATTAAATAAAATATGTT
** * ** * * ** * * *
72046156 TTAGAATTTATTTTCGCCGTTTAATAGATTTTATT-C-CGTTTTTATTTTATTCCCAAAACGAGT
192 TCGGGATTTATTCCCGCCGTGTAACAGATTTTATTACATTTTTTTATTTTATTTCCAAAACAAGA
72046219 ATTA
257 ATTA
* * * * * * ** * *
72046223 AAATTATATTAAATCTGTTTCGGGATTTATTCCCGTTGTTCAACAGATTTTATT
1 AAATAAAATAAAATCTGTTTCAGGAGTTATTACCGCCGCTCAACGGATTTTATT
72046277 TCATTCTTAA
Statistics
Matches: 477, Mismatches: 77, Indels: 35
0.81 0.13 0.06
Matches are distributed among these distances:
251 69 0.14
252 11 0.02
253 70 0.15
255 1 0.00
259 1 0.00
260 49 0.10
261 205 0.43
262 67 0.14
263 4 0.01
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (260 bp):
AAATAAAATAAAATCTGTTTCAGGAGTTATTACCGCCGCTCAACGGATTTTATTCTTTTTTTATT
TTATTTCCAAACGAAAAATTAAAGTTAAATAAAATCCGTTTCGGGATTTATTCCTGCCGTTCAAC
AAATTTTATTCTATTTTTTATTTTATTTCAAAACGAGAAATAAAATTAAATAAAATATGTTTCGG
GATTTATTCCCGCCGTGTAACAGATTTTATTACATTTTTTTATTTTATTTCCAAAACAAGAATTA
Found at i:72046136 original size:77 final size:78
Alignment explanation
Indices: 72046021--72046254 Score: 245
Period size: 77 Copynumber: 2.9 Consensus size: 78
72046011 TCAATGGATA
* *
72046021 TTATTCTATTTTTTTATTTTATTTCCGAAACAAGTATTAAAATTAAATAAAATATGTTTCGGGAT
1 TTATTCTA-TTTTTTATTTTATTTCCAAAACGAGTATTAAAATTAAATAAAATATGTTTCGGGAT
72046086 TTATTCTCGCCGTT
65 TTATTCTCGCCGTT
* * * * ** *
72046100 TTATTCTA-TTTTTATTTTGTTTTCAAAACGATTATTAAAATTAAATAAAATATATTTTAGAATT
1 TTATTCTATTTTTTATTTTATTTCCAAAACGAGTATTAAAATTAAATAAAATATGTTTCGGGATT
*
72046164 TATTTTCGCCGTT
66 TATTCTCGCCGTT
* * * * *
72046177 TAATAGATTTTATTCCGTTTTTATTTTATTCCCAAAACGAGTATTAAAATTATATTAAATCTGTT
1 T--T--ATTCTA-T---TTTTTATTTTATTTCCAAAACGAGTATTAAAATTAAATAAAATATGTT
72046242 TCGGGATTTATTC
58 TCGGGATTTATTC
72046255 CCGTTGTTCA
Statistics
Matches: 123, Mismatches: 23, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
77 60 0.49
79 9 0.07
81 5 0.04
86 49 0.40
ACGTcount: A:0.32, C:0.10, G:0.09, T:0.49
Consensus pattern (78 bp):
TTATTCTATTTTTTATTTTATTTCCAAAACGAGTATTAAAATTAAATAAAATATGTTTCGGGATT
TATTCTCGCCGTT
Found at i:72046502 original size:83 final size:79
Alignment explanation
Indices: 72046415--72046883 Score: 230
Period size: 83 Copynumber: 5.8 Consensus size: 79
72046405 CGTTTAATAG
* * *
72046415 ATTTTATTTGATTTTGTTTTTTGTTCCAAAATTAAAATTAAATTGAATAATTTGTTTCGAAATTT
1 ATTTTATTTGATTTTG-TTTTTGTTCC-AAATTAAAATTAAATTAAATAATCTGTTTCGAGATTT
72046480 ATTCCAACCAGCTAACAT
64 ATTCC-ACC-GCTAACAT
* * * * * ** ** * *
72046498 ATTTTACTCGATCTTGATTTTGTTTCTAAACGAACCCTT-AATCAAATAATTCTGTTTCGGGATT
1 ATTTTATTTGATTTTGTTTTTG-TTCCAAATTAA-AATTAAATTAAATAA-TCTGTTTCGAGATT
72046562 TATTCC-CGCTGCTTAACAT
63 TATTCCAC-C-GC-TAACAT
* * * *** *
72046581 ATTTTATTTTAATTTTG----T-TTCCAAATTAGAACTAAATTTTGTAATCTGTTTCTAGATTTA
1 ATTTTA-TTTGATTTTGTTTTTGTTCCAAATTAAAATTAAATTAAATAATCTGTTTCGAGATTTA
*
72046641 TTCC-CGTCGTTTAACAT
65 TTCCAC--CG-CTAACAT
72046658 ATTTTATTTGATTTTGTTTTTTGTTCCCAAATTAAAATTAAATTAAATAATCTGTTTC-AGGATT
1 ATTTTATTTGATTTTG-TTTTTGTT-CCAAATTAAAATTAAATTAAATAATCTGTTTCGA-GATT
* *
72046722 TATTCCAGCCGGTTAACAG
63 TATTCCA-CC-GCTAACAT
* * * * * ** * *
72046741 ATTTCATTCGATCTTGATTTTGTTTCTAAACGAACACTT-AATCAAATAATTCTGTTTCGAGATT
1 ATTTTATTTGATTTTGTTTTTG-TTCCAAATTAA-AATTAAATTAAATAA-TCTGTTTCGAGATT
* * *
72046805 TATTCCCGCCGTTTAACAG
63 TATT-CCACCG-CTAACAT
** * * * *
72046824 ATTTTATTT--TAAT-TTTTT-TTACAAA-TAAGATTTAATTAAATAATTCTGTTTCGGGATTTA
1 ATTTTATTTGATTTTGTTTTTGTTCCAAATTAAAATTAAATTAAATAA-TCTGTTTCGAGATTTA
72046884 ATCTTGCCGT
Statistics
Matches: 296, Mismatches: 63, Indels: 60
0.71 0.15 0.14
Matches are distributed among these distances:
76 11 0.04
77 60 0.20
78 19 0.06
80 5 0.02
81 4 0.01
82 45 0.15
83 141 0.48
84 10 0.03
85 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.46
Consensus pattern (79 bp):
ATTTTATTTGATTTTGTTTTTGTTCCAAATTAAAATTAAATTAAATAATCTGTTTCGAGATTTAT
TCCACCGCTAACAT
Found at i:72046783 original size:243 final size:243
Alignment explanation
Indices: 72046343--72046849 Score: 773
Period size: 243 Copynumber: 2.1 Consensus size: 243
72046333 ATTTTATTCA
* * **
72046343 ATTTTTATTTGGTTTCCAAATTAGAACTAAATTTTGTAATATGTTTCGAGATTTATTCTTGTCGT
1 ATTTTAATTTTGTTTCCAAATTAGAACTAAATTTTGTAATATGTTTCGAGATTTATTCCCGTCGT
* * *
72046408 TTAATAGATTTTATTTGATTTTGTTTTTTGTTCCAAAATTAAAATTAAATTGAATAATTTGTTTC
66 TTAACAGATTTTATTTGATTTTGTTTTTTGTTCCAAAATTAAAATTAAATTAAATAATCTGTTTC
* * *
72046473 GAAATTTATTCCAACCAGCTAACATATTTTACTCGATCTTGATTTTGTTTCTAAACGAACCCTTA
131 GAAATTTATTCCAACCAGCTAACAGATTTCACTCGATCTTGATTTTGTTTCTAAACGAACACTTA
* * *
72046538 ATCAAATAATTCTGTTTCGGGATTTATTCCCGCTGCTTAACATATTTT
196 ATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGCTTAACAGATTTT
* *
72046586 ATTTTAATTTTGTTTCCAAATTAGAACTAAATTTTGTAATCTGTTTCTAGATTTATTCCCGTCGT
1 ATTTTAATTTTGTTTCCAAATTAGAACTAAATTTTGTAATATGTTTCGAGATTTATTCCCGTCGT
* *
72046651 TTAACATATTTTATTTGATTTTGTTTTTTGTTCCCAAATTAAAATTAAATTAAATAATCTGTTTC
66 TTAACAGATTTTATTTGATTTTGTTTTTTGTTCCAAAATTAAAATTAAATTAAATAATCTGTTTC
* * * * *
72046716 -AGGATTTATTCCAGCCGGTTAACAGATTTCATTCGATCTTGATTTTGTTTCTAAACGAACACTT
131 GA-AATTTATTCCAACCAGCTAACAGATTTCACTCGATCTTGATTTTGTTTCTAAACGAACACTT
*
72046780 AATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTT
195 AATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGCTTAACAGATTTT
* *
72046829 ATTTTAATTTTTTTTACAAAT
1 ATTTTAATTTTGTTTCCAAAT
72046850 AAGATTTAAT
Statistics
Matches: 238, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
242 1 0.00
243 237 1.00
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.47
Consensus pattern (243 bp):
ATTTTAATTTTGTTTCCAAATTAGAACTAAATTTTGTAATATGTTTCGAGATTTATTCCCGTCGT
TTAACAGATTTTATTTGATTTTGTTTTTTGTTCCAAAATTAAAATTAAATTAAATAATCTGTTTC
GAAATTTATTCCAACCAGCTAACAGATTTCACTCGATCTTGATTTTGTTTCTAAACGAACACTTA
ATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGCTTAACAGATTTT
Found at i:72046870 original size:77 final size:77
Alignment explanation
Indices: 72046534--72046903 Score: 255
Period size: 77 Copynumber: 4.6 Consensus size: 77
72046524 TAAACGAACC
* * * * * *
72046534 CTTAATCAAATAATTCTGTTTCGGGATTTATTCCCGCTGCTTAACATATTTTATTTTAATTTTGT
1 CTTAATTAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTTATTTTAATTTTTT
* *
72046599 TTCCAAATTAGAA
66 TTACAAATAAG-A
* *** * * * **
72046612 CTAAATTTTGTAA-TCTGTTTCTAGATTTATTCCCGTCGTTTAACATATTTTATTTGATTTTGTT
1 CTTAATTAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTTA--T--TTTAATT
*
72046676 TTTTGTTCCCAAATTAA-A
62 TTTT-TT-ACAAA-TAAGA
* * * * *
72046694 ATTAAATTAAATAA-TCTGTTTC-AGGATTTATTCCAGCCGGTTAACAGATTTCATTCGATCTTG
1 CTT-AATTAAATAATTCTGTTTCGA-GATTTATTCCCGCCGTTTAACAGA-TT--TT--ATTTTA
** *
72046757 ATTTTGTTTCTA-AACGAACA
59 ATTTT-TTT-TACAAATAAGA
*
72046777 CTTAATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTTATTTTAATTTTTT
1 CTTAATTAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTTATTTTAATTTTTT
72046842 TTACAAATAAGA
66 TTACAAATAAGA
* * * ** *
72046854 TTTAATTAAATAATTCTGTTTCGGGATTTAATCTTGCCGTTCAACAGATT
1 CTTAATTAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATT
72046904 GATTTTGATT
Statistics
Matches: 227, Mismatches: 45, Indels: 41
0.73 0.14 0.13
Matches are distributed among these distances:
76 2 0.01
77 85 0.37
78 17 0.07
79 1 0.00
80 2 0.01
81 8 0.04
82 18 0.08
83 75 0.33
84 12 0.05
85 3 0.01
86 3 0.01
88 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.11, T:0.46
Consensus pattern (77 bp):
CTTAATTAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTTATTTTAATTTTTT
TTACAAATAAGA
Found at i:72046913 original size:6 final size:6
Alignment explanation
Indices: 72046902--72046934 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
72046892 GTTCAACAGA
72046902 TTGATT TTGATT TTGATT TTGATT TTGATT TTG
1 TTGATT TTGATT TTGATT TTGATT TTGATT TTG
72046935 CTCCAGAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.15, C:0.00, G:0.18, T:0.67
Consensus pattern (6 bp):
TTGATT
Found at i:72046913 original size:243 final size:243
Alignment explanation
Indices: 72046343--72046921 Score: 732
Period size: 243 Copynumber: 2.4 Consensus size: 243
72046333 ATTTTATTCA
* * * * *** *
72046343 ATTTTTATTTGGTTTCCAAATTAGAACTAAATTTTGTAATATGTTTCGAGATTTATTCTTGTCGT
1 ATTTTAATTTTGTTTACAAATAAGAACTAAATTAAATAATCTGTTTCGAGATTTATTCTTGTCGT
* * *
72046408 TTAATAGATTTTATTTGATTTTGTTTTTTGTTCCAAAATTAAAATTAAATTGAATAATTTGTTTC
66 TTAACAGATTTTATTTGATTTTGTTTTTTGTTCCAAAATTAAAATTAAATTAAATAATCTGTTTC
* * *
72046473 GAAATTTATTCCAACCAGCTAACATATTTTACTCGATCTTGATTTTGTTTCTAAACGAACCCTTA
131 GAAATTTATTCCAACCAGCTAACAGATTTCACTCGATCTTGATTTTGTTTCTAAACGAACACTTA
* * *
72046538 ATCAAATAATTCTGTTTCGGGATTTATTCCCGCTGCTTAACATATTTT
196 ATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGCTTAACAGATTTT
* * *** * **
72046586 ATTTTAATTTTGTTTCCAAATTAGAACTAAATTTTGTAATCTGTTTCTAGATTTATTCCCGTCGT
1 ATTTTAATTTTGTTTACAAATAAGAACTAAATTAAATAATCTGTTTCGAGATTTATTCTTGTCGT
* *
72046651 TTAACATATTTTATTTGATTTTGTTTTTTGTTCCCAAATTAAAATTAAATTAAATAATCTGTTTC
66 TTAACAGATTTTATTTGATTTTGTTTTTTGTTCCAAAATTAAAATTAAATTAAATAATCTGTTTC
* * * * *
72046716 -AGGATTTATTCCAGCCGGTTAACAGATTTCATTCGATCTTGATTTTGTTTCTAAACGAACACTT
131 GA-AATTTATTCCAACCAGCTAACAGATTTCACTCGATCTTGATTTTGTTTCTAAACGAACACTT
*
72046780 AATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTT
195 AATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGCTTAACAGATTTT
* * * * * *
72046829 ATTTTAATTTTTTTTACAAATAAG-ATTTAATTAAATAATTCTGTTTCGGGATTTAATCTTGCCG
1 ATTTTAATTTTGTTTACAAATAAGAACTAAATTAAATAA-TCTGTTTCGAGATTTATTCTTGTCG
* * *
72046893 TTCAACAGA-TTGATTTTGATTTTGATTTT
65 TTTAACAGATTTTA-TTTGATTTTGTTTTT
72046922 GATTTTGATT
Statistics
Matches: 292, Mismatches: 41, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
242 13 0.04
243 279 0.96
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.47
Consensus pattern (243 bp):
ATTTTAATTTTGTTTACAAATAAGAACTAAATTAAATAATCTGTTTCGAGATTTATTCTTGTCGT
TTAACAGATTTTATTTGATTTTGTTTTTTGTTCCAAAATTAAAATTAAATTAAATAATCTGTTTC
GAAATTTATTCCAACCAGCTAACAGATTTCACTCGATCTTGATTTTGTTTCTAAACGAACACTTA
ATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGCTTAACAGATTTT
Found at i:72047023 original size:12 final size:13
Alignment explanation
Indices: 72047006--72047035 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
72046996 TTTTCTATTT
72047006 ATTGTGGCATT-A
1 ATTGTGGCATTAA
72047018 ATTGTGGCATTAA
1 ATTGTGGCATTAA
72047031 ATTGT
1 ATTGT
72047036 AACTTCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.27, C:0.07, G:0.23, T:0.43
Consensus pattern (13 bp):
ATTGTGGCATTAA
Found at i:72049114 original size:20 final size:19
Alignment explanation
Indices: 72049089--72049138 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
72049079 ACATATATCC
*
72049089 TAATTTTATTTGATTCTAAT
1 TAATTTGATTTGATT-TAAT
*
72049109 TAATTTGGTTTGATTTAAT
1 TAATTTGATTTGATTTAAT
* *
72049128 CAAATTGATTT
1 TAATTTGATTT
72049139 AATTGTCCCC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.30, C:0.04, G:0.10, T:0.56
Consensus pattern (19 bp):
TAATTTGATTTGATTTAAT
Found at i:72049872 original size:87 final size:85
Alignment explanation
Indices: 72049716--72049965 Score: 268
Period size: 87 Copynumber: 2.9 Consensus size: 85
72049706 ATTTTATTTG
* * * * * **
72049716 AAAATATAAATAAAAT-CGTTTTGGGATTTATTCCCACCGTTTAACAAATTTTATTATATTTTGG
1 AAAAT-TAAATAAAATCCGTTTCGGGATTTATTCCCGCTGTTTAAC-GATTTTATTCTATTTTTT
*
72049780 ATTTTATTTCCAAACGAGAAATT
64 ATTTTATTTCAAAACGAG-AATT
* ** * *
72049803 AAAGTTAAATAAAATCCGTTTCGAAATTTTTTCCCGCTGTTTAACGTATTTTATTCTATTTTTTC
1 AAAATTAAATAAAATCCGTTTCGGGATTTATTCCCGCTGTTTAACG-ATTTTATTCTATTTTTTA
*
72049868 TTTTATTTCAAAACGAGTATT
65 TTTTATTTCAAAACGAGAATT
** * *
72049889 AAAATTAAATAAAATCTATTTCGGGATTTATTCCCGCTGTTTAACAGATTCTATTCCATTTTTTT
1 AAAATTAAATAAAATCCGTTTCGGGATTTATTCCCGCTGTTTAAC-GATTTTATTCTA-TTTTTT
*
72049954 ATTTTGTTTCAA
64 ATTTTATTTCAA
72049966 GATTTATTCC
Statistics
Matches: 135, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
86 61 0.45
87 74 0.55
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (85 bp):
AAAATTAAATAAAATCCGTTTCGGGATTTATTCCCGCTGTTTAACGATTTTATTCTATTTTTTAT
TTTATTTCAAAACGAGAATT
Found at i:72050285 original size:82 final size:80
Alignment explanation
Indices: 72050015--72050304 Score: 196
Period size: 82 Copynumber: 3.5 Consensus size: 80
72050005 GATTTTTTTG
* * * ** * ** *
72050015 TCAAACGAGAAATTAAAATTAAATAAAATATGTTTCTAGATTTATTCTTACCATTTAATAGATTT
1 TCAAATGA-AAATT-AAATCAAAT-AATTATGTTTCGGGATTTATTATTACCGGTTAACAGATTT
72050080 TATTCAATTTTAATTTGGT-T
63 TATTCAATTTT--TTT-GTAT
* * **** * * * *
72050100 TCCAAATTAGAATTAAATTTTTTAATT-TGTTTCGAGATTTATTTTTTCCGTTTAACAGATTTTA
1 T-CAAATGAAAATTAAATCAAATAATTATGTTTCGGGATTTATTATTACCGGTTAACAGATTTTA
**
72050164 TTTGATTTTTTTGTAT
65 TTCAATTTTTTTGTAT
**
72050180 TCAAATGAAAATTAAATTGAATAATCTAT-TTT-GGGATTTATTATTACCGGTTAACAGATTTTA
1 TCAAATGAAAATTAAATCAAATAAT-TATGTTTCGGGATTTATTATTACCGGTTAACAGATTTTA
72050243 TTCAATCTTGATTTTGT-T
65 TTCAAT-TT--TTTTGTAT
* *
72050261 TCTAAATGAAGACTT-AATCAAATAATTTTGTTTCGGGATTTATT
1 TC-AAATGAA-AATTAAATCAAATAATTATGTTTCGGGATTTATT
72050305 CCCGCCACTT
Statistics
Matches: 165, Mismatches: 29, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
79 52 0.32
80 11 0.07
81 6 0.04
82 64 0.39
83 16 0.10
84 6 0.04
85 5 0.03
86 5 0.03
ACGTcount: A:0.33, C:0.08, G:0.11, T:0.48
Consensus pattern (80 bp):
TCAAATGAAAATTAAATCAAATAATTATGTTTCGGGATTTATTATTACCGGTTAACAGATTTTAT
TCAATTTTTTTGTAT
Found at i:72062213 original size:30 final size:30
Alignment explanation
Indices: 72062172--72062228 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
72062162 TGGCCAGTTT
*
72062172 GTGTGGCTCACACGGGCATGTGCTCAGCCC
1 GTGTAGCTCACACGGGCATGTGCTCAGCCC
* *
72062202 GTGTAGCTCACATGGTCATGTGCTCAG
1 GTGTAGCTCACACGGGCATGTGCTCAG
72062229 TCCATGTGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.25
Consensus pattern (30 bp):
GTGTAGCTCACACGGGCATGTGCTCAGCCC
Found at i:72079385 original size:6 final size:6
Alignment explanation
Indices: 72079374--72079398 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
72079364 TTTTATTATG
72079374 TATGTA TATGTA TATGTA TATGTA T
1 TATGTA TATGTA TATGTA TATGTA T
72079399 TTAATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TATGTA
Found at i:72079417 original size:12 final size:12
Alignment explanation
Indices: 72079378--72079426 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
72079368 ATTATGTATG
*
72079378 TATATGTATATG
1 TATATGTATATA
*
72079390 TATATGTATTTAA
1 TATATGTATAT-A
*
72079403 TATATTTATATA
1 TATATGTATATA
*
72079415 TATATTTATATA
1 TATATGTATATA
72079427 GCATCATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
12 23 0.72
13 9 0.28
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (12 bp):
TATATGTATATA
Found at i:72092496 original size:14 final size:14
Alignment explanation
Indices: 72092477--72092503 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
72092467 CCAAGGTATT
72092477 TTCAAATTCTGTTG
1 TTCAAATTCTGTTG
72092491 TTCAAATTCTGTT
1 TTCAAATTCTGTT
72092504 TTTAATTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.52
Consensus pattern (14 bp):
TTCAAATTCTGTTG
Found at i:72092636 original size:87 final size:87
Alignment explanation
Indices: 72092500--72092914 Score: 471
Period size: 87 Copynumber: 4.7 Consensus size: 87
72092490 GTTCAAATTC
* * *
72092500 TGTTTTTAATTTCTACTTTTCCAAAATCAACTCATATTGCGA-AGGGTGAGTTGAGTCTCAGGAC
1 TGTTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGA-GGTGAGTTGAGCCTCAGGAC
*
72092564 ACGCTGAGGTAATTTCAATTCT-
65 ACGCTGAGGTATTTTCAATTCTA
* * * * *
72092586 TGTCTGTAATTTCTACTTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTAGGAT
1 TGTTTTTAATTTCTA-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* *
72092651 ATGCTGAGGTATTTTCAATT-TC
65 ACGCTGAGGTATTTTCAATTCTA
*
72092673 TGTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCT
1 TGTTTTT-AATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--
* * *
72092737 CACATGCTGAGGTACTTTCAGTTTCTA
63 -ACACGCTGAGGTATTTTCA-ATTCTA
* * * * *
72092764 T-TTTTCAAATTCCTGTTTGTCAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TGTTTT-TAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
72092828 ACGCTGAGGTATTTTCAATTTCTA
65 ACGCTGAGGTATTTTCAA-TTCTA
* * *
72092852 TTTTTTTTTTAAATTTATATTTTTCAAAAATCAACTCCTATTGCGAGAGGTGAGTTGAGCCTC
1 ---TGTTTTT-AATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
72092915 GGGTCACATG
Statistics
Matches: 277, Mismatches: 35, Indels: 28
0.81 0.10 0.08
Matches are distributed among these distances:
86 16 0.06
87 106 0.38
88 30 0.11
89 17 0.06
90 53 0.19
91 5 0.02
92 50 0.18
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.39
Consensus pattern (87 bp):
TGTTTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTATTTTCAATTCTA
Found at i:72092681 original size:14 final size:14
Alignment explanation
Indices: 72092662--72092696 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
72092652 TGCTGAGGTA
* *
72092662 TTTTCAATTTCTGT
1 TTTTCAATTTATAT
72092676 TTTTCAATTTATAT
1 TTTTCAATTTATAT
72092690 TTTTCAA
1 TTTTCAA
72092697 AAATCAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.23, C:0.11, G:0.03, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTATAT
Found at i:72092815 original size:177 final size:174
Alignment explanation
Indices: 72092491--72092932 Score: 525
Period size: 182 Copynumber: 2.5 Consensus size: 174
72092481 AATTCTGTTG
* * * *
72092491 TTCAAATTCTGTTTTTAATTTCTACTTTTCCAAAATCAACTCATATTGCGA-AGGGTGAGTTGAG
1 TTCAATTTCTGTTTTTAATTTATATTTTTCAAAAATCAACTCATATTGCGAGA-GGTGAGTTGAG
* * ** * *
72092555 TCTCAGG--ACACGCTGAGGTAATTTCAATTCTTGTCTGTAATTTCTACTTTTTCAAAAATCAAC
65 CCTC-GGTCACATGCTGAGGTAATTTCAATTCTTGTCTCAAATTCCTACTTTGTCAAAAATCAAC
* * * * *
72092618 TCATATTGTGAGAGGTGAGTTGAGCCTTAGGATATGCTGAGGTATT
129 CCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
72092664 TTCAATTTCTGTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTCAATTTCTGTTTTT-AATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * * * *
72092729 CCTCGGCTCACATGCTGAGGTACTTTCAGTTTCTATTTTTCAAATTCCT-GTTTGTCAAAAATCA
65 CCTCGG-TCACATGCTGAGGTAATTTCA-ATTCT-TGTCTCAAATTCCTACTTTGTCAAAAATCA
72092793 ACCCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
127 ACCCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
* *
72092841 TTCAATTTCTATTTTTTTTTTAAATTTATATTTTTCAAAAATCAACTCCTATTGCGAGAGGTGAG
1 TTCAATTTC-----TGTTTTT-AATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG
72092906 TTGAGCCTCGGGTCACATG-TCGAGGTA
60 TTGAGCCTC-GGTCACATGCT-GAGGTA
72092933 TTTTTAAAAT
Statistics
Matches: 232, Mismatches: 23, Indels: 19
0.85 0.08 0.07
Matches are distributed among these distances:
173 17 0.07
174 46 0.20
175 1 0.00
176 17 0.07
177 69 0.30
178 9 0.04
181 1 0.00
182 70 0.30
183 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (174 bp):
TTCAATTTCTGTTTTTAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCGGTCACATGCTGAGGTAATTTCAATTCTTGTCTCAAATTCCTACTTTGTCAAAAATCAACCC
ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
Found at i:72092866 original size:19 final size:19
Alignment explanation
Indices: 72092839--72092875 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
72092829 CGCTGAGGTA
* *
72092839 TTTTCAATTTCTATTTTTT
1 TTTTAAATTTATATTTTTT
72092858 TTTTAAATTTATATTTTT
1 TTTTAAATTTATATTTTT
72092876 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTAAATTTATATTTTTT
Found at i:72092924 original size:182 final size:174
Alignment explanation
Indices: 72092502--72092914 Score: 473
Period size: 177 Copynumber: 2.3 Consensus size: 174
72092492 TCAAATTCTG
* * * *
72092502 TTTTT-AATTTCTACTTTTCCAAAATCAACTCATATTGCGA-AGGGTGAGTTGAGTCTCAGGACA
1 TTTTTAAATTTATATTTTTCAAAAATCAACTCATATTGCGAGA-GGTGAGTTGAGCCTCAGGACA
* * * *
72092565 CGCTGAGGTAATTTCAATTCTTGTCTGTAATTTCTACT-TTTTCAAAAATCAACTCATATTGTGA
65 CG-TGAGGTAATTTCATTTCTTTTCT-CAA-TTC--CTGTTTTCAAAAATCAACTCATATTGCGA
* * *
72092629 GAGGTGAGTTGAGCCTTAGGATATGCTGAGGTATTTTCAATTTC----TG
125 GAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAATTTCTTTTTT
*
72092675 TTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCA
1 TTTTTAAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---A
* * * *
72092739 CATGCTGAGGTACTTTCAGTTTCTATTTTTCAAATTCCTGTTTGTCAAAAATCAACCCATATTGC
63 CACG-TGAGGTAATTTCA-TTTCT-TTTCTC-AATTCCTGTTT-TCAAAAATCAACTCATATTGC
*
72092804 GAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTATTTTT
123 GAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAATTTCT-TTTTT
*
72092857 TTTTTAAATTTATATTTTTCAAAAATCAACTCCTATTGCGAGAGGTGAGTTGAGCCTC
1 TTTTTAAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
72092915 GGGTCACATG
Statistics
Matches: 207, Mismatches: 18, Indels: 21
0.84 0.07 0.09
Matches are distributed among these distances:
173 7 0.03
174 46 0.22
175 3 0.01
176 20 0.10
177 69 0.33
178 5 0.02
182 57 0.28
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (174 bp):
TTTTTAAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GTGAGGTAATTTCATTTCTTTTCTCAATTCCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTG
AGTTGAGCCTCAGGACATGCTGAGGTATTTTCAATTTCTTTTTT
Found at i:72095035 original size:6 final size:6
Alignment explanation
Indices: 72094990--72095019 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
72094980 TTTTATTATG
72094990 TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA
72095020 ATTAATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
TATGTA
Found at i:72095041 original size:12 final size:12
Alignment explanation
Indices: 72094990--72095048 Score: 57
Period size: 12 Copynumber: 4.8 Consensus size: 12
72094980 TTTTATTATG
*
72094990 TATGTATATGTA
1 TATGTATATATA
*
72095002 TATGTATATGTA
1 TATGTATATATA
72095014 TATGTA-ATTAATA
1 TATGTATA-T-ATA
*
72095027 TATTTATATATA
1 TATGTATATATA
*
72095039 TATTTATATA
1 TATGTATATA
72095049 GCATCATTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
11 1 0.02
12 32 0.76
13 8 0.19
14 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (12 bp):
TATGTATATATA
Found at i:72100618 original size:77 final size:77
Alignment explanation
Indices: 72100491--72100644 Score: 308
Period size: 77 Copynumber: 2.0 Consensus size: 77
72100481 ACGACCACCA
72100491 TGGCTCCTTTGTCATGTGCTAGCTTGCTTAGCTCCGGAATGTTGGCCACTGTGAGTGTGGGGTTA
1 TGGCTCCTTTGTCATGTGCTAGCTTGCTTAGCTCCGGAATGTTGGCCACTGTGAGTGTGGGGTTA
72100556 GACATGGACTCG
66 GACATGGACTCG
72100568 TGGCTCCTTTGTCATGTGCTAGCTTGCTTAGCTCCGGAATGTTGGCCACTGTGAGTGTGGGGTTA
1 TGGCTCCTTTGTCATGTGCTAGCTTGCTTAGCTCCGGAATGTTGGCCACTGTGAGTGTGGGGTTA
72100633 GACATGGACTCG
66 GACATGGACTCG
72100645 AAGAACAACA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.14, C:0.21, G:0.32, T:0.32
Consensus pattern (77 bp):
TGGCTCCTTTGTCATGTGCTAGCTTGCTTAGCTCCGGAATGTTGGCCACTGTGAGTGTGGGGTTA
GACATGGACTCG
Found at i:72102023 original size:21 final size:20
Alignment explanation
Indices: 72101957--72102022 Score: 98
Period size: 21 Copynumber: 3.2 Consensus size: 20
72101947 TTATATGATC
72101957 AAAATTAATT-AATATGTAAAA
1 AAAATTAATTGAAT-T-TAAAA
72101978 AAAATTAATTGAATTTTAAAA
1 AAAATTAATTGAA-TTTAAAA
72101999 AAAATTAATTGAATTTAAAA
1 AAAATTAATTGAATTTAAAA
72102019 AAAA
1 AAAA
72102023 AATCAACCCT
Statistics
Matches: 43, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.26
21 28 0.65
22 3 0.07
23 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
AAAATTAATTGAATTTAAAA
Found at i:72102577 original size:16 final size:16
Alignment explanation
Indices: 72102558--72102590 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
72102548 TTTGATTTTA
72102558 TTTT-ATTTTATAAATC
1 TTTTAATTTTA-AAATC
72102574 TTTTAATTTTAAAATC
1 TTTTAATTTTAAAATC
72102590 T
1 T
72102591 ATTTCAGAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTAATTTTAAAATC
Found at i:72103009 original size:16 final size:16
Alignment explanation
Indices: 72102988--72103018 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72102978 ATTCTTAAAT
72102988 TTAAATTAAATTATTA
1 TTAAATTAAATTATTA
*
72103004 TTAAATTTAATTATT
1 TTAAATTAAATTATT
72103019 TTATTGCTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTAAATTAAATTATTA
Found at i:72106351 original size:31 final size:31
Alignment explanation
Indices: 72106313--72106461 Score: 217
Period size: 31 Copynumber: 4.8 Consensus size: 31
72106303 GCAAATGACA
72106313 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
* *
72106344 AGTGAAAAGTGGTAGCTTCTACTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
* *
72106375 AGTGAAAAATGGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
* * *
72106406 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
* *
72106437 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGACTAC
72106462 AAGTGACAAG
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 108 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGACTACCTGATC
Found at i:72106549 original size:47 final size:46
Alignment explanation
Indices: 72106479--72106602 Score: 149
Period size: 47 Copynumber: 2.7 Consensus size: 46
72106469 AAGTGATTTC
* *
72106479 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * * *
72106525 CTGTATAAGACCATATCTGGGATATGGAATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * * *
72106572 CGTGTAAGACCATAGCTGGGCTATGACATCG
1 CGTATAAGACCATATCTGGGATATGGCATCG
72106603 ATATGTGATA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
46 25 0.38
47 40 0.62
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:72106632 original size:49 final size:48
Alignment explanation
Indices: 72106561--72106655 Score: 163
Period size: 49 Copynumber: 2.0 Consensus size: 48
72106551 GAATCAGTGA
72106561 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGACATCGATATGT
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGACATCGATATGT
* *
72106609 GATATGTGATTACGTGTTAGACCATAGCTGGGCTATGACATTGATAT
1 GATATGTGATT-CGTGTAAGACCATAGCTGGGCTATGACATCGATAT
72106656 ATGAAAATGT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
48 11 0.25
49 33 0.75
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGACATCGATATGT
Found at i:72108364 original size:13 final size:13
Alignment explanation
Indices: 72108346--72108375 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
72108336 TTTCAATGTA
72108346 ATTTGAATTTTTT
1 ATTTGAATTTTTT
72108359 ATTTGAATTTTTT
1 ATTTGAATTTTTT
72108372 ATTT
1 ATTT
72108376 TTTTATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (13 bp):
ATTTGAATTTTTT
Found at i:72109978 original size:23 final size:23
Alignment explanation
Indices: 72109936--72109980 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
72109926 ATTGAAATAA
**
72109936 ATAAATAATAAAAGGGTTAAAAT
1 ATAAATAATAAAAGAATTAAAAT
*
72109959 ATAAATAATAAAATAATTAAAA
1 ATAAATAATAAAAGAATTAAAA
72109981 CATGCTTAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (23 bp):
ATAAATAATAAAAGAATTAAAAT
Found at i:72119132 original size:7 final size:7
Alignment explanation
Indices: 72119120--72119146 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
72119110 ATTGTCGGAA
72119120 AAATATG
1 AAATATG
72119127 AAATATG
1 AAATATG
72119134 AAATATG
1 AAATATG
72119141 AAATAT
1 AAATAT
72119147 AGTAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (7 bp):
AAATATG
Found at i:72119216 original size:21 final size:19
Alignment explanation
Indices: 72119187--72119226 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
72119177 AAAAGTAATT
*
72119187 TTAATTTTATTTAATTTATAA
1 TTAAATTTATTT--TTTATAA
72119208 TTAAATTTATTTTTTATAA
1 TTAAATTTATTTTTTATAA
72119227 AGTAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
21 11 0.61
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTAAATTTATTTTTTATAA
Found at i:72129128 original size:3 final size:3
Alignment explanation
Indices: 72129097--72129169 Score: 69
Period size: 3 Copynumber: 24.3 Consensus size: 3
72129087 ATACGCGTAC
* * *
72129097 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
72129144 CTA ATA ATA CTA ATA AT- ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
72129170 CAAGGATATT
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
2 4 0.07
3 46 0.82
4 6 0.11
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:72129655 original size:11 final size:12
Alignment explanation
Indices: 72129635--72129672 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
72129625 GAAAAAAAAA
72129635 GAAGAGAGAGAGG
1 GAAGAGAGA-AGG
72129648 GAAGAGAGAAGG
1 GAAGAGAGAAGG
72129660 G-AGAGAGAAGG
1 GAAGAGAGAAGG
72129671 GA
1 GA
72129673 GGGGGAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.46
12 4 0.17
13 9 0.38
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:72129738 original size:6 final size:6
Alignment explanation
Indices: 72129727--72129757 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
72129717 ACCGGAGGCT
72129727 CGCCGG CGCCGG CGCCGG CGCCGG CGCCGG C
1 CGCCGG CGCCGG CGCCGG CGCCGG CGCCGG C
72129758 CACCGCACGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.48, T:0.00
Consensus pattern (6 bp):
CGCCGG
Found at i:72130187 original size:8 final size:8
Alignment explanation
Indices: 72130174--72130198 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
72130164 GGTGTTCGGC
72130174 GCAAGTGG
1 GCAAGTGG
72130182 GCAAGTGG
1 GCAAGTGG
72130190 GCAAGTGG
1 GCAAGTGG
72130198 G
1 G
72130199 GGGTAGGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.52, T:0.12
Consensus pattern (8 bp):
GCAAGTGG
Found at i:72137105 original size:26 final size:25
Alignment explanation
Indices: 72137076--72137126 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
72137066 TTATTTTTAT
*
72137076 TTTTATTAAAATATATTTAACAATAA
1 TTTTATTAAAATATA-ATAACAATAA
*
72137102 TTTTATTAAAATTTAATAACAATAA
1 TTTTATTAAAATATAATAACAATAA
72137127 CAATAATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (25 bp):
TTTTATTAAAATATAATAACAATAA
Found at i:72138954 original size:135 final size:135
Alignment explanation
Indices: 72138712--72138983 Score: 535
Period size: 135 Copynumber: 2.0 Consensus size: 135
72138702 GAAACTTCAA
72138712 ACTTGCCAGTAACTGGAAAATTATTAGTTTATTGTATCCATGGATTACCTCAAATTATTAGTGTT
1 ACTTGCCAGTAACTGGAAAATTATTAGTTTATTGTATCCATGGATTACCTCAAATTATTAGTGTT
72138777 AGTATATATATACAGTCTTACATGCATATATGATAACTGCTTCAAATAATTACAAATTCAAAAGA
66 AGTATATATATACAGTCTTACATGCATATATGATAACTGCTTCAAATAATTACAAATTCAAAAGA
72138842 TATAT
131 TATAT
*
72138847 ACTTGCCAGTAACTTGAAAATTATTAGTTTATTGTATCCATGGATTACCTCAAATTATTAGTGTT
1 ACTTGCCAGTAACTGGAAAATTATTAGTTTATTGTATCCATGGATTACCTCAAATTATTAGTGTT
72138912 AGTATATATATACAGTCTTACATGCATATATGATAACTGCTTCAAATAATTACAAATTCAAAAGA
66 AGTATATATATACAGTCTTACATGCATATATGATAACTGCTTCAAATAATTACAAATTCAAAAGA
72138977 TATAT
131 TATAT
72138982 AC
1 AC
72138984 CTAACATTTA
Statistics
Matches: 136, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 136 1.00
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (135 bp):
ACTTGCCAGTAACTGGAAAATTATTAGTTTATTGTATCCATGGATTACCTCAAATTATTAGTGTT
AGTATATATATACAGTCTTACATGCATATATGATAACTGCTTCAAATAATTACAAATTCAAAAGA
TATAT
Found at i:72142630 original size:12 final size:11
Alignment explanation
Indices: 72142594--72142632 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
72142584 AACTCTAAAC
72142594 ATAAATAATAAA
1 ATAAATAAT-AA
*
72142606 ATAAATATTAA
1 ATAAATAATAA
72142617 ATAAATCAATAA
1 ATAAAT-AATAA
72142629 ATAA
1 ATAA
72142633 TTGTGTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (11 bp):
ATAAATAATAA
Found at i:72146262 original size:5 final size:5
Alignment explanation
Indices: 72146252--72146291 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
72146242 AAACTCTCAA
72146252 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72146292 ATTATCCATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:72148411 original size:17 final size:17
Alignment explanation
Indices: 72148389--72148428 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
72148379 TTATATTTAA
*
72148389 TTTATATAGATTAAAAT
1 TTTATATAAATTAAAAT
72148406 TTTATATAAATTAAAAT
1 TTTATATAAATTAAAAT
72148423 TTTATA
1 TTTATA
72148429 ATTATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TTTATATAAATTAAAAT
Found at i:72151991 original size:41 final size:41
Alignment explanation
Indices: 72151929--72152007 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
72151919 TAACAAAGAC
* *
72151929 AACATATTCATATTCATGGAGACAATGAATTCTATATTGAG
1 AACATATTCATATTCACGGAGACAATAAATTCTATATTGAG
72151970 AACATATTCATATTCACGGAGACAATAAATTCTATATT
1 AACATATTCATATTCACGGAGACAATAAATTCTATATT
72152008 CAAACTTAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (41 bp):
AACATATTCATATTCACGGAGACAATAAATTCTATATTGAG
Found at i:72152006 original size:24 final size:22
Alignment explanation
Indices: 72151925--72152009 Score: 63
Period size: 23 Copynumber: 3.9 Consensus size: 22
72151915 TCATTAACAA
* *
72151925 AGACAACATATTCATATTCATGG
1 AGACAATAAATTCATATTCA-GG
* *
72151948 AGACAATGAATTCTATATTGA-G
1 AGACAATAAATTC-ATATTCAGG
72151970 A-AC-AT--ATTCATATTCACGG
1 AGACAATAAATTCATATTCA-GG
72151989 AGACAATAAATTCTATATTCA
1 AGACAATAAATTC-ATATTCA
72152010 AACTTAACGT
Statistics
Matches: 49, Mismatches: 5, Indels: 15
0.71 0.07 0.22
Matches are distributed among these distances:
17 6 0.12
18 4 0.08
19 2 0.04
20 4 0.08
21 4 0.08
22 2 0.04
23 14 0.29
24 13 0.27
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (22 bp):
AGACAATAAATTCATATTCAGG
Found at i:72153791 original size:22 final size:23
Alignment explanation
Indices: 72153742--72153793 Score: 63
Period size: 25 Copynumber: 2.3 Consensus size: 23
72153732 AAACAGATAT
*
72153742 TTTAT-AAAAAAATAAATCAGTTAT
1 TTTATAAAAAAAATAAAT-A-TTAC
72153766 TTTATAAAAAAAATAAAT-TTAC
1 TTTATAAAAAAAATAAATATTAC
72153788 TTTATA
1 TTTATA
72153794 TATATTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 9 0.35
24 5 0.19
25 12 0.46
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (23 bp):
TTTATAAAAAAAATAAATATTAC
Found at i:72156133 original size:52 final size:49
Alignment explanation
Indices: 72156048--72156414 Score: 431
Period size: 46 Copynumber: 7.6 Consensus size: 49
72156038 TTTGAGTACT
* **
72156048 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
72156094 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
72156146 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
72156192 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
72156238 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
72156290 TCTGATCAAGTGACAAGTGAAAAGTGAAAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
72156342 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
72156388 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
72156415 GCTACACTTA
Statistics
Matches: 290, Mismatches: 17, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
46 154 0.53
48 1 0.00
49 2 0.01
50 1 0.00
52 132 0.46
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:72156168 original size:98 final size:97
Alignment explanation
Indices: 72156048--72156414 Score: 492
Period size: 98 Copynumber: 3.7 Consensus size: 97
72156038 TTTGAGTACT
* *
72156048 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
72156113 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
72156146 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
72156206 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
72156238 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
*
72156303 CAAGTGAAAAGTGAAAAGTGATAGCTTCGGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * * *
72156342 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
72156407 GATAAGTG
65 GA-AAGTG
72156415 GCTACACTTA
Statistics
Matches: 239, Mismatches: 16, Indels: 27
0.85 0.06 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
96 1 0.00
98 145 0.61
99 10 0.04
101 1 0.00
104 40 0.17
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:72156396 original size:196 final size:196
Alignment explanation
Indices: 72156062--72156414 Score: 598
Period size: 196 Copynumber: 1.8 Consensus size: 196
72156052 ATCAAGTGAT
* * * *
72156062 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGAAAAGTA
* * * *
72156127 ATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
72156192 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
72156257 G
196 G
* *
72156258 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGAAAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGAAAAGTA
*
72156323 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
72156388 TCTGATCAAGAGACAAAGTGATAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTG
72156415 GCTACACTTA
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
196 145 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (196 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGAAAAGTA
ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
G
Found at i:72156422 original size:37 final size:37
Alignment explanation
Indices: 72156378--72156486 Score: 186
Period size: 37 Copynumber: 3.0 Consensus size: 37
72156368 GATAGCTTTA
72156378 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
72156415 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
72156452 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
72156487 ATCATACGTA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
35 12 0.17
36 4 0.06
37 53 0.77
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:72158181 original size:13 final size:13
Alignment explanation
Indices: 72158163--72158188 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72158153 AATATTGCAT
72158163 GAAAATTTTTATC
1 GAAAATTTTTATC
72158176 GAAAATTTTTATC
1 GAAAATTTTTATC
72158189 AATTATGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
GAAAATTTTTATC
Found at i:72158669 original size:20 final size:22
Alignment explanation
Indices: 72158639--72158686 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
72158629 GAATATGCAG
*
72158639 TAAATTGAAAG-TTTTTGATAGA
1 TAAA-TGAAAGATTATTGATAGA
72158661 -AAATGAAAGATTATTGATAGA
1 TAAATGAAAGATTATTGATAGA
72158682 TAAAT
1 TAAAT
72158687 CACTTTTACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 6 0.26
21 13 0.57
22 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.35
Consensus pattern (22 bp):
TAAATGAAAGATTATTGATAGA
Found at i:72159414 original size:32 final size:32
Alignment explanation
Indices: 72159368--72159552 Score: 131
Period size: 33 Copynumber: 5.7 Consensus size: 32
72159358 TACCCAAATG
*
72159368 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTAC-ACTTGAAAAGGATATGTACACTTTGTGT
* * *
72159401 GTACACTTGAAAAGGAAAGGTATACTTTGTGT
1 GTACACTTGAAAAGGATATGTACACTTTGTGT
* * * * * *
72159433 ATAC-CATATGAAAAGGAAAGGTATACTATATGT
1 GTACAC-T-TGAAAAGGATATGTACACTTTGTGT
* * * * *
72159466 GTACACTTGAAAACGTTATGTGCATTTTGAGT
1 GTACACTTGAAAAGGATATGTACACTTTGTGT
* * *
72159498 GTACAAATTGAAAAGGGTATGTACACTTCGTGT
1 GTAC-ACTTGAAAAGGATATGTACACTTTGTGT
*
72159531 GTACCACTGGAAAATGGA-ATGT
1 GTA-CACTTGAAAA-GGATATGT
72159553 GCACCTCGAG
Statistics
Matches: 118, Mismatches: 28, Indels: 12
0.75 0.18 0.08
Matches are distributed among these distances:
31 1 0.01
32 47 0.40
33 66 0.56
34 4 0.03
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (32 bp):
GTACACTTGAAAAGGATATGTACACTTTGTGT
Found at i:72165758 original size:30 final size:30
Alignment explanation
Indices: 72165717--72165783 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
72165707 AGAATATATA
* *
72165717 TTTTTAGCACTTACATTTTCAATACTTAAT
1 TTTTTAACACTTACATTTTCAACACTTAAT
** *
72165747 TTTTTAACACTTATTTTTTCAACCCTTAAT
1 TTTTTAACACTTACATTTTCAACACTTAAT
72165777 TTTTTAA
1 TTTTTAA
72165784 TTTATCAAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.28, C:0.16, G:0.01, T:0.54
Consensus pattern (30 bp):
TTTTTAACACTTACATTTTCAACACTTAAT
Found at i:72165762 original size:14 final size:15
Alignment explanation
Indices: 72165717--72165783 Score: 66
Period size: 15 Copynumber: 4.5 Consensus size: 15
72165707 AGAATATATA
*
72165717 TTTTTAGCACTTACA-
1 TTTTTAACACTTA-AT
* *
72165732 TTTTCAATACTTAAT
1 TTTTTAACACTTAAT
72165747 TTTTTAACACTT-AT
1 TTTTTAACACTTAAT
*
72165761 TTTTTCAACCCTTAAT
1 TTTTT-AACACTTAAT
72165777 TTTTTAA
1 TTTTTAA
72165784 TTTATCAAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
14 8 0.19
15 28 0.65
16 7 0.16
ACGTcount: A:0.28, C:0.16, G:0.01, T:0.54
Consensus pattern (15 bp):
TTTTTAACACTTAAT
Found at i:72166118 original size:17 final size:17
Alignment explanation
Indices: 72166096--72166130 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
72166086 ACAAGTTCTT
72166096 CTTTCTTTAATCCCGTC
1 CTTTCTTTAATCCCGTC
72166113 CTTTCTTTAATCCCGTC
1 CTTTCTTTAATCCCGTC
72166130 C
1 C
72166131 ATTATCCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.37, G:0.06, T:0.46
Consensus pattern (17 bp):
CTTTCTTTAATCCCGTC
Found at i:72169427 original size:16 final size:16
Alignment explanation
Indices: 72169408--72169438 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72169398 AGAATGTTCG
72169408 TTTGAGTGAATAAATC
1 TTTGAGTGAATAAATC
*
72169424 TTTGGGTGAATAAAT
1 TTTGAGTGAATAAAT
72169439 TTGATTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.39
Consensus pattern (16 bp):
TTTGAGTGAATAAATC
Found at i:72170562 original size:13 final size:14
Alignment explanation
Indices: 72170544--72170573 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
72170534 TGATTTTTAA
72170544 AAAAATT-ATAAAT
1 AAAAATTAATAAAT
72170557 AAAAATTAATAAAT
1 AAAAATTAATAAAT
72170571 AAA
1 AAA
72170574 CTAAAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAAATTAATAAAT
Found at i:72179677 original size:24 final size:25
Alignment explanation
Indices: 72179627--72179677 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
72179617 ATTTTACTAT
* *
72179627 TTTAAAATATAAAAAATATTTTGTA
1 TTTAAAATATAAAAAAAATTATGTA
72179652 TTTAAAAGTA-AAAAAAAATTAT-TA
1 TTTAAAA-TATAAAAAAAATTATGTA
72179676 TT
1 TT
72179678 AAGTAGCGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 4 0.17
25 17 0.74
26 2 0.09
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (25 bp):
TTTAAAATATAAAAAAAATTATGTA
Found at i:72187274 original size:99 final size:99
Alignment explanation
Indices: 72187103--72187302 Score: 400
Period size: 99 Copynumber: 2.0 Consensus size: 99
72187093 ATAACAGTGC
72187103 CATCGTAAACTACTAAAAAGGAATCAAAACTAGGGTCAAGTTGTTTGCTTCGTATTACATAAAAG
1 CATCGTAAACTACTAAAAAGGAATCAAAACTAGGGTCAAGTTGTTTGCTTCGTATTACATAAAAG
72187168 AGAGAACGATGAACAAATTAATGTCTTAAAGATA
66 AGAGAACGATGAACAAATTAATGTCTTAAAGATA
72187202 CATCGTAAACTACTAAAAAGGAATCAAAACTAGGGTCAAGTTGTTTGCTTCGTATTACATAAAAG
1 CATCGTAAACTACTAAAAAGGAATCAAAACTAGGGTCAAGTTGTTTGCTTCGTATTACATAAAAG
72187267 AGAGAACGATGAACAAATTAATGTCTTAAAGATA
66 AGAGAACGATGAACAAATTAATGTCTTAAAGATA
72187301 CA
1 CA
72187303 CCAGAAGGGT
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
99 101 1.00
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (99 bp):
CATCGTAAACTACTAAAAAGGAATCAAAACTAGGGTCAAGTTGTTTGCTTCGTATTACATAAAAG
AGAGAACGATGAACAAATTAATGTCTTAAAGATA
Found at i:72189826 original size:16 final size:16
Alignment explanation
Indices: 72189793--72189826 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
72189783 ACATAGTGTT
* *
72189793 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
72189809 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
72189825 AA
1 AA
72189827 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:72192653 original size:21 final size:21
Alignment explanation
Indices: 72192627--72192667 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
72192617 AGACGAGCAA
* *
72192627 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
72192648 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
72192668 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:72194606 original size:16 final size:16
Alignment explanation
Indices: 72194573--72194606 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
72194563 GGAGATTGTT
* *
72194573 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
72194589 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
72194605 AA
1 AA
72194607 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:72196130 original size:21 final size:21
Alignment explanation
Indices: 72196104--72196148 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
72196094 CCTTCATCAT
*
72196104 TGATTATCACGTTACTACGGA
1 TGATTATCACGATACTACGGA
72196125 TGATTATCACGATACTACGGA
1 TGATTATCACGATACTACGGA
72196146 TGA
1 TGA
72196149 CTTTTGAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (21 bp):
TGATTATCACGATACTACGGA
Found at i:72205363 original size:28 final size:26
Alignment explanation
Indices: 72205330--72205381 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
72205320 TCATTTTAAT
72205330 TTTTTTAAAATTTTTATGAACTTTTTTA
1 TTTTTTAAAATTTTTAT-AA-TTTTTTA
**
72205358 TTTTTTATTATTTTTATAATTTTT
1 TTTTTTAAAATTTTTATAATTTTT
72205382 AAATTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 2 0.09
28 15 0.68
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (26 bp):
TTTTTTAAAATTTTTATAATTTTTTA
Found at i:72205386 original size:8 final size:9
Alignment explanation
Indices: 72205331--72205392 Score: 56
Period size: 9 Copynumber: 6.8 Consensus size: 9
72205321 CATTTTAATT
*
72205331 TTTTTAAAA
1 TTTTTATAA
72205340 TTTTTATGAA
1 TTTTTAT-AA
*
72205350 CTTTTT-TAT
1 -TTTTTATAA
*
72205359 TTTTTATTA
1 TTTTTATAA
72205368 TTTTTATAA
1 TTTTTATAA
72205377 TTTTTA-AA
1 TTTTTATAA
72205385 TTATTTAT
1 TT-TTTAT
72205393 TGATGTAACA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
8 9 0.21
9 26 0.60
10 3 0.07
11 5 0.12
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (9 bp):
TTTTTATAA
Found at i:72205391 original size:27 final size:28
Alignment explanation
Indices: 72205339--72205393 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
72205329 TTTTTTTAAA
* *
72205339 ATTTTTATGAACTTTTTTATTTTTTATT
1 ATTTTTATGAACTTTTTAATTATTTATT
72205367 ATTTTTAT-AA-TTTTTAAATTATTTATT
1 ATTTTTATGAACTTTTT-AATTATTTATT
72205394 GATGTAACAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 5 0.21
27 11 0.46
28 8 0.33
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (28 bp):
ATTTTTATGAACTTTTTAATTATTTATT
Found at i:72208787 original size:16 final size:17
Alignment explanation
Indices: 72208766--72208797 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
72208756 TAATATTTAC
72208766 ATATTTATTA-ATAAAT
1 ATATTTATTATATAAAT
72208782 ATATTTATTATATAAA
1 ATATTTATTATATAAA
72208798 ATTTTCATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTTATTATATAAAT
Found at i:72210197 original size:29 final size:30
Alignment explanation
Indices: 72210165--72210221 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
72210155 TGGTTTAATA
*
72210165 TGTAATTGTATATATG-AACTTTGATTTTG
1 TGTAATTGTATACATGAAACTTTGATTTTG
* *
72210194 TGTAATTTTATACATGAAATTTTGATTT
1 TGTAATTGTATACATGAAACTTTGATTT
72210222 GATCCAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.30, C:0.04, G:0.14, T:0.53
Consensus pattern (30 bp):
TGTAATTGTATACATGAAACTTTGATTTTG
Found at i:72210222 original size:29 final size:29
Alignment explanation
Indices: 72210142--72210221 Score: 79
Period size: 31 Copynumber: 2.7 Consensus size: 29
72210132 ATACTAAAAT
* * *
72210142 TATACATGAACTATGGTTTAATATGTAATTG
1 TATACATGAACTTTGATTT--TGTGTAATTG
* *
72210173 TATATATGAACTTTGATTTTGTGTAATTT
1 TATACATGAACTTTGATTTTGTGTAATTG
*
72210202 TATACATGAAATTTTGATTT
1 TATACATG-AACTTTGATTT
72210222 GATCCAATTC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 15 0.37
30 10 0.24
31 16 0.39
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.49
Consensus pattern (29 bp):
TATACATGAACTTTGATTTTGTGTAATTG
Found at i:72210447 original size:29 final size:31
Alignment explanation
Indices: 72210379--72210457 Score: 74
Period size: 29 Copynumber: 2.6 Consensus size: 31
72210369 AAATTAATGT
* * *
72210379 TTCAAGTATACATTTGA-ACCACAATTAGAAT
1 TTCACGTATACAATT-ACACCACAATTAGAAA
**
72210410 TTCACGTATATTATTACACCA-AATTA-AAA
1 TTCACGTATACAATTACACCACAATTAGAAA
*
72210439 TTCATGTATACAATTACAC
1 TTCACGTATACAATTACAC
72210458 ATTAAATCAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
29 18 0.46
30 6 0.15
31 15 0.38
ACGTcount: A:0.42, C:0.18, G:0.06, T:0.34
Consensus pattern (31 bp):
TTCACGTATACAATTACACCACAATTAGAAA
Found at i:72211263 original size:22 final size:22
Alignment explanation
Indices: 72211210--72211263 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 22
72211200 GAATTAGTTG
* * **
72211210 TTTTCTTGTTGTTTTGCTTTCA
1 TTTTATTGTTGTTTTACTACCA
* *
72211232 TTTCACTGTTGTTTTACTACCA
1 TTTTATTGTTGTTTTACTACCA
72211254 TTTTATTGTT
1 TTTTATTGTT
72211264 ATTATTTGGA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.11, C:0.15, G:0.11, T:0.63
Consensus pattern (22 bp):
TTTTATTGTTGTTTTACTACCA
Found at i:72213262 original size:50 final size:51
Alignment explanation
Indices: 72213138--72213386 Score: 279
Period size: 50 Copynumber: 4.8 Consensus size: 51
72213128 GATAATAACA
* * ** * * *
72213138 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGT-TCTTGTGATGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCT-ACGG
* *
72213189 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCT-CGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTACGG
* * *
72213239 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCT-CGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTACGG
* *
72213289 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-TACGG
* *
72213344 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
72213387 TTACCCAAAT
Statistics
Matches: 169, Mismatches: 22, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
50 87 0.51
51 34 0.20
52 4 0.02
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTACGG
Found at i:72213324 original size:100 final size:104
Alignment explanation
Indices: 72213137--72213386 Score: 348
Period size: 100 Copynumber: 2.4 Consensus size: 104
72213127 TGATAATAAC
** *
72213137 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTTGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
72213202 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
72213239 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
72213302 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
72213344 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
72213387 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 49 0.37
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:72213502 original size:13 final size:13
Alignment explanation
Indices: 72213481--72213512 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
72213471 GCTTGGATCA
*
72213481 TCATCAAATAAAT
1 TCATAAAATAAAT
72213494 TCATAAAATAAAT
1 TCATAAAATAAAT
72213507 TCATAA
1 TCATAA
72213513 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:72213759 original size:30 final size:30
Alignment explanation
Indices: 72213724--72213781 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
72213714 CCTCGACTCT
*
72213724 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
72213754 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
72213782 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:72214781 original size:25 final size:25
Alignment explanation
Indices: 72214753--72214802 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
72214743 TAGGTAAGGC
*
72214753 TCCTTCTCCTTCTTTCGTTCTTCAT
1 TCCTTCTCCTTCTTCCGTTCTTCAT
* *
72214778 TCCTTTTTCTTCTTCCGTTCTTCAT
1 TCCTTCTCCTTCTTCCGTTCTTCAT
72214803 CTTCTCTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.04, C:0.34, G:0.04, T:0.58
Consensus pattern (25 bp):
TCCTTCTCCTTCTTCCGTTCTTCAT
Done.