Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 237 of 250
Found at i:73224602 original size:18 final size:18
Alignment explanation
Indices: 73224570--73224620 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
73224560 TTGAGACAAG
73224570 AATAAATTT--TTAATTA
1 AATAAATTTAATTAATTA
73224586 AATAAATTTAATTAATTA
1 AATAAATTTAATTAATTA
73224604 AA-AAATTTAAATTAATT
1 AATAAATTT-AATTAATT
73224621 TGGAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.28
17 6 0.19
18 17 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AATAAATTTAATTAATTA
Found at i:73228224 original size:27 final size:28
Alignment explanation
Indices: 73228188--73228247 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
73228178 TATTTTTATT
*
73228188 TGTTTCAAA-TTATATTTTAATTACTTA
1 TGTTTCAAAGTTATATTTTAATCACTTA
* *
73228215 TGTTTGAAATGTTATATTTTAGTCACTTA
1 TGTTTCAAA-GTTATATTTTAATCACTTA
73228244 TGTT
1 TGTT
73228248 ATCATTTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 8 0.29
29 20 0.71
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.55
Consensus pattern (28 bp):
TGTTTCAAAGTTATATTTTAATCACTTA
Found at i:73234240 original size:88 final size:88
Alignment explanation
Indices: 73234058--73234255 Score: 222
Period size: 88 Copynumber: 2.2 Consensus size: 88
73234048 CTAATATACC
* *
73234058 ATCAATATACCAG-TTCCATAAACATAAGCCATCAAATTAAAGACATTTTTTCCATCATGATCAA
1 ATCAATATACCAGTTTCCATAAACACAAGCCATCAAATTAAAGACA--TTTTCCATCATGACCAA
* * *
73234122 ATATTCAATTTACACCTAATATGCG
64 ATATTCAATATACAACAAATATGCG
* * * *
73234147 ATCAATATACCAGTTTCCCATAAACACAAGCCATTC-AATTCAAGACA-TTTCTATTATGGCCAA
1 ATCAATATACCAGTTT-CCATAAACACAAGCCA-TCAAATTAAAGACATTTTCCATCATGACCAA
*
73234210 ATATTCAATATACAACAAATATGCT
64 ATATTCAATATACAACAAATATGCG
* *
73234235 ATCAATAAACCAATTTTCCAT
1 ATCAATATACC-AGTTTCCAT
73234256 TTTTATCATT
Statistics
Matches: 93, Mismatches: 12, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
88 47 0.51
89 17 0.18
90 2 0.02
91 25 0.27
92 2 0.02
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.31
Consensus pattern (88 bp):
ATCAATATACCAGTTTCCATAAACACAAGCCATCAAATTAAAGACATTTTCCATCATGACCAAAT
ATTCAATATACAACAAATATGCG
Found at i:73237981 original size:69 final size:69
Alignment explanation
Indices: 73237902--73238040 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
73237892 TAATCTGTAC
*
73237902 ATTGTTTTTTCTTTTAAATTAATAGAAAGTAGCTCTTTTATTTACTTTATGCAATTCAATAAATA
1 ATTGTTTTTTCTTTTAAATTAATAGAAAGTAGCTCTTTTATTTACTTTATGCAATTCAATAAACA
73237967 ATAT
66 ATAT
73237971 ATTGTTTTTTCTTTTAAATTAATAGAAAGTAGCTCTTTTATTTACTTTATGCAATTCAATAAACA
1 ATTGTTTTTTCTTTTAAATTAATAGAAAGTAGCTCTTTTATTTACTTTATGCAATTCAATAAACA
73238036 ATAT
66 ATAT
73238040 A
1 A
73238041 CCCTTTTTTT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.48
Consensus pattern (69 bp):
ATTGTTTTTTCTTTTAAATTAATAGAAAGTAGCTCTTTTATTTACTTTATGCAATTCAATAAACA
ATAT
Found at i:73247316 original size:66 final size:66
Alignment explanation
Indices: 73247211--73247588 Score: 616
Period size: 66 Copynumber: 5.7 Consensus size: 66
73247201 CAGGTTGACC
*
73247211 TTGAGGAAT-CAAAAAACAGGAAAGTGCAAGGTTTGAATCTACTTTACAAAAGATGCAACTTGAG
1 TTGAGGAATCCAAAAAACAGGAAAGTGCAAGGTTTGAATCTACTTTGCAAAAGATGCAACTTGAG
73247275 T
66 T
* * *
73247276 TTGAGGAATCCAAGAAAA-AGGAAAGTGCAAGGTTTGAATCTAATTTGCAAAAGAAGGAACTTGA
1 TTGAGGAATCCAA-AAAACAGGAAAGTGCAAGGTTTGAATCTACTTTGCAAAAGATGCAACTTGA
73247340 GT
65 GT
* *
73247342 TTGAGGAATCCAAAAAACAGGAAAGTGAAAGGTTTGAATCTACTTTGCACAAGATGCAACTTGAG
1 TTGAGGAATCCAAAAAACAGGAAAGTGCAAGGTTTGAATCTACTTTGCAAAAGATGCAACTTGAG
73247407 T
66 T
* * * *
73247408 TTGAGGAATCCAAGAAACAGGAAAGTGAAAGGTTTGAATCTACTTTCCACAAGATGCAACTTGAG
1 TTGAGGAATCCAAAAAACAGGAAAGTGCAAGGTTTGAATCTACTTTGCAAAAGATGCAACTTGAG
73247473 T
66 T
**
73247474 TTGAGGAATCCAAAAAACAGGAAAGTGCAAGGTTTGAATCTACTACGCAAAAGATGCAACTTGAG
1 TTGAGGAATCCAAAAAACAGGAAAGTGCAAGGTTTGAATCTACTTTGCAAAAGATGCAACTTGAG
73247539 T
66 T
*
73247540 TTGAGGAATCCAAAAAACAGGAAAGAGCAAGGTTTGAATCTACTTTGCA
1 TTGAGGAATCCAAAAAACAGGAAAGTGCAAGGTTTGAATCTACTTTGCA
73247589 CAGAAAGGAA
Statistics
Matches: 290, Mismatches: 20, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
65 13 0.04
66 273 0.94
67 4 0.01
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.23
Consensus pattern (66 bp):
TTGAGGAATCCAAAAAACAGGAAAGTGCAAGGTTTGAATCTACTTTGCAAAAGATGCAACTTGAG
T
Found at i:73247636 original size:21 final size:21
Alignment explanation
Indices: 73247597--73247648 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
73247587 CACAGAAAGG
* * *
73247597 AACTTCAGTTTCAGCAACTGC
1 AACTTGAGTTGCAGAAACTGC
*
73247618 AATTTGAGTTGCAGAAACTGC
1 AACTTGAGTTGCAGAAACTGC
*
73247639 AGCTTGAGTT
1 AACTTGAGTT
73247649 TGAGGAATCC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (21 bp):
AACTTGAGTTGCAGAAACTGC
Found at i:73247732 original size:66 final size:66
Alignment explanation
Indices: 73247641--73247787 Score: 249
Period size: 66 Copynumber: 2.2 Consensus size: 66
73247631 GAAACTGCAG
*
73247641 CTTGAGTTTGAGGAATCCAAAAAACAGGAAAGAGAAACACTAGAATCTACTTTGCACAAGAAGGA
1 CTTGAGTTTCAGGAATCCAAAAAACAGGAAAGAGAAACACTAGAATCTACTTTGCACAAGAAGGA
73247706 A
66 A
* * * *
73247707 CTTGAGTTTCAGGAATCCAAAAAACAGGAAAGAGCAACATTTGAATCTACTTTGTACAAGAAGGA
1 CTTGAGTTTCAGGAATCCAAAAAACAGGAAAGAGAAACACTAGAATCTACTTTGCACAAGAAGGA
73247772 A
66 A
73247773 CTTGAGTTTCAGGAA
1 CTTGAGTTTCAGGAA
73247788 CTGCAAGTTG
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 76 1.00
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.22
Consensus pattern (66 bp):
CTTGAGTTTCAGGAATCCAAAAAACAGGAAAGAGAAACACTAGAATCTACTTTGCACAAGAAGGA
A
Found at i:73247757 original size:174 final size:174
Alignment explanation
Indices: 73247462--73247801 Score: 493
Period size: 174 Copynumber: 2.0 Consensus size: 174
73247452 TTCCACAAGA
* * *** *
73247462 TGCAACTTGAGTTTGAGGAATCCAAAAAACAGGAAAGTGCAAGGTTTGAATCTACTACGCAAAAG
1 TGCAACTTGAGTTTGAGGAATCCAAAAAACAGGAAAGAGAAACACTAGAATCTACTACGCAAAAG
* * **
73247527 ATGCAACTTGAGTTTGAGGAATCCAAAAAACAGGAAAGAGCAAGGTTTGAATCTACTTTGCAC-A
66 AAGCAACTTGAGTTTCAGGAATCCAAAAAACAGGAAAGAGCAACATTTGAATCTACTTTGCACAA
*
73247591 GAAAGGAACTTCAGTTTCAGCAACTGCAATTTGAGTTGCAGAAAC
131 G-AAGGAACTTCAGTTTCAGCAACTGCAAGTTGAGTTGCAGAAAC
* ** *
73247636 TGCAGCTTGAGTTTGAGGAATCCAAAAAACAGGAAAGAGAAACACTAGAATCTACTTTGCACAAG
1 TGCAACTTGAGTTTGAGGAATCCAAAAAACAGGAAAGAGAAACACTAGAATCTACTACGCAAAAG
* *
73247701 AAGGAACTTGAGTTTCAGGAATCCAAAAAACAGGAAAGAGCAACATTTGAATCTACTTTGTACAA
66 AAGCAACTTGAGTTTCAGGAATCCAAAAAACAGGAAAGAGCAACATTTGAATCTACTTTGCACAA
* *
73247766 GAAGGAACTTGAGTTTCAGGAACTGCAAGTTGAGTT
131 GAAGGAACTTCAGTTTCAGCAACTGCAAGTTGAGTT
73247802 TTGCAACTTG
Statistics
Matches: 146, Mismatches: 19, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
174 144 0.99
175 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (174 bp):
TGCAACTTGAGTTTGAGGAATCCAAAAAACAGGAAAGAGAAACACTAGAATCTACTACGCAAAAG
AAGCAACTTGAGTTTCAGGAATCCAAAAAACAGGAAAGAGCAACATTTGAATCTACTTTGCACAA
GAAGGAACTTCAGTTTCAGCAACTGCAAGTTGAGTTGCAGAAAC
Found at i:73248598 original size:33 final size:33
Alignment explanation
Indices: 73248550--73248678 Score: 222
Period size: 33 Copynumber: 3.9 Consensus size: 33
73248540 CAGGAGATCC
* * *
73248550 CCGTTGTTGACGATGAATCAATGAATAAACCTA
1 CCGTTATTGAAGATGAATCAATGAATAAACATA
73248583 CCGTTATTGAAGATGAATCAATGAATAAACATA
1 CCGTTATTGAAGATGAATCAATGAATAAACATA
73248616 CCGTTATTGAAGATGAATCAATGAATAAACATA
1 CCGTTATTGAAGATGAATCAATGAATAAACATA
*
73248649 CCGTTATTGATGATGAATCAATGAATAAAC
1 CCGTTATTGAAGATGAATCAATGAATAAAC
73248679 TTACTCCTGA
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 92 1.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (33 bp):
CCGTTATTGAAGATGAATCAATGAATAAACATA
Found at i:73249253 original size:347 final size:347
Alignment explanation
Indices: 73248618--73249467 Score: 1477
Period size: 347 Copynumber: 2.4 Consensus size: 347
73248608 TAAACATACC
* *
73248618 GTTATTGAAGATGAATCAATGAATAAACATACCGTTATTGATGATGAATCAATGAATAAACTTAC
1 GTTATTGAA-ATGAATCAATGAATAAACCTACCGTTATTGACGATGAATCAATGAATAAACTTAC
* *
73248683 TCCTGAAAATGAACAGCTGAAGGTATTGTTAGACATTTGTTGCTTCAAATACTATCTCAGGTTTG
65 TGCTGAAAATGAACAGCTGAAGGTATTGTTAGACATTTGTTGCTTCGAATACTATCTCAGGTTTG
*
73248748 ACTAAAGGCTTTCTTGATGTCATTTGGAAAAAAGATTTTGGACATGGGAGCTGAGGACCAGAAAC
130 ACTAAAGGCTTTCTTGATGTCATTTGAAAAAAAGATTTTGGACATGGGAGCTGAGGACCAGAAAC
* * *
73248813 CACAGCAGCAGGCCATGCTGAGTTCACTGAGTACTACCATTTCAGAGGTGACATCTGCAGTAAGA
195 CACAGCAGCAGGCCATGCCGAGTTCACTGAGTACAACCATGTCAGAGGTGACATCTGCAGTAAGA
*
73248878 TATATCTCAACATTCTTTCCTTTTA-TTTTATTGAGTAGAATTATTCTTTCCTTATCTCAACAAG
260 TATATCTCAACATTCTTTCCTTTTATTTTTATTGAGTAGAATAATTCTTTCCTTATCTCAACAAG
73248942 TTCCTGTGGTTCAGGAGATCCCT
325 TTCCTGTGGTTCAGGAGATCCCT
*
73248965 GTTATTGAGAATGAATCAATGAATAAACCTACCGTTAATGACGATGAATCAATGAATAAACTTAC
1 GTTATTGA-AATGAATCAATGAATAAACCTACCGTTATTGACGATGAATCAATGAATAAACTTAC
*
73249030 TGCTGAAAAAGAACAGCTGAAGGTATTGTTAGACATTTGTTGCTTCGAATACTATCTCAGGTTTG
65 TGCTGAAAATGAACAGCTGAAGGTATTGTTAGACATTTGTTGCTTCGAATACTATCTCAGGTTTG
73249095 ACTAAAGGCTTTCTTGATGTCATTTGAAAAAAAGATTTTGGACATGGGAGCTGAGGACCAGAAAC
130 ACTAAAGGCTTTCTTGATGTCATTTGAAAAAAAGATTTTGGACATGGGAGCTGAGGACCAGAAAC
*
73249160 CACAGCAGCTGGCCATGCCGAGTTCACTGAGTACAACCATGTCAGAGGTGACATCTGCAGTAAGA
195 CACAGCAGCAGGCCATGCCGAGTTCACTGAGTACAACCATGTCAGAGGTGACATCTGCAGTAAGA
73249225 TATATCTCAACATTCTTTCCTTTTATTTTTATTGAGTAGAATAATTCTTTCCTTATCTCAACAAG
260 TATATCTCAACATTCTTTCCTTTTATTTTTATTGAGTAGAATAATTCTTTCCTTATCTCAACAAG
73249290 TTCCTGTGGTTCAGGAGATCCCT
325 TTCCTGTGGTTCAGGAGATCCCT
* * * *
73249313 GTTATTGACAATGAATCAATGAATAAACCTACCGTTATTGACGATGGATCAATAAATAGACTTAT
1 GTTATTGA-AATGAATCAATGAATAAACCTACCGTTATTGACGATGAATCAATGAATAAACTTAC
* * * * *
73249378 TGCTGAAAATGAGCAGCTGAAGGTATTGTTAGATATTTTTTGCTTCGAATACTATCTTAGTTTTG
65 TGCTGAAAATGAACAGCTGAAGGTATTGTTAGACATTTGTTGCTTCGAATACTATCTCAGGTTTG
73249443 ACTAAAGGCTTTCTTGATGTCATTT
130 ACTAAAGGCTTTCTTGATGTCATTT
73249468 TTAAACTTGG
Statistics
Matches: 477, Mismatches: 24, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
347 272 0.57
348 205 0.43
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (347 bp):
GTTATTGAAATGAATCAATGAATAAACCTACCGTTATTGACGATGAATCAATGAATAAACTTACT
GCTGAAAATGAACAGCTGAAGGTATTGTTAGACATTTGTTGCTTCGAATACTATCTCAGGTTTGA
CTAAAGGCTTTCTTGATGTCATTTGAAAAAAAGATTTTGGACATGGGAGCTGAGGACCAGAAACC
ACAGCAGCAGGCCATGCCGAGTTCACTGAGTACAACCATGTCAGAGGTGACATCTGCAGTAAGAT
ATATCTCAACATTCTTTCCTTTTATTTTTATTGAGTAGAATAATTCTTTCCTTATCTCAACAAGT
TCCTGTGGTTCAGGAGATCCCT
Found at i:73256843 original size:14 final size:14
Alignment explanation
Indices: 73256826--73256862 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
73256816 ATATTTACAA
*
73256826 TATTATCTATTATG
1 TATTATATATTATG
73256840 TATTATATATTATG
1 TATTATATATTATG
73256854 TATT-TATAT
1 TATTATATAT
73256863 AATTTTCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (14 bp):
TATTATATATTATG
Found at i:73258185 original size:69 final size:69
Alignment explanation
Indices: 73258074--73258209 Score: 272
Period size: 69 Copynumber: 2.0 Consensus size: 69
73258064 ACCTACAGAG
73258074 AAATTAATATACTATTAGAGTTAGTCAGATGATATAAGCTCTATTATCCAGAAAGCATTTCAGTG
1 AAATTAATATACTATTAGAGTTAGTCAGATGATATAAGCTCTATTATCCAGAAAGCATTTCAGTG
73258139 CTGA
66 CTGA
73258143 AAATTAATATACTATTAGAGTTAGTCAGATGATATAAGCTCTATTATCCAGAAAGCATTTCAGTG
1 AAATTAATATACTATTAGAGTTAGTCAGATGATATAAGCTCTATTATCCAGAAAGCATTTCAGTG
73258208 CT
66 CT
73258210 CCATTTTCAG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (69 bp):
AAATTAATATACTATTAGAGTTAGTCAGATGATATAAGCTCTATTATCCAGAAAGCATTTCAGTG
CTGA
Found at i:73261133 original size:2 final size:2
Alignment explanation
Indices: 73261126--73261156 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
73261116 TATAAATATA
73261126 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
73261157 TAAATAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:73262403 original size:21 final size:21
Alignment explanation
Indices: 73262379--73262421 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
73262369 TACACCACAC
*
73262379 AAACGCACCTAGCCTAACCAT
1 AAACGCACCTAGACTAACCAT
73262400 AAACGCACCTAGACTAACCAT
1 AAACGCACCTAGACTAACCAT
73262421 A
1 A
73262422 TGATATGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.35, G:0.09, T:0.14
Consensus pattern (21 bp):
AAACGCACCTAGACTAACCAT
Found at i:73267127 original size:13 final size:13
Alignment explanation
Indices: 73267111--73267145 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
73267101 ACCAAATTTT
73267111 TCAAAAGCACTTC
1 TCAAAAGCACTTC
* *
73267124 TCAAAAGTACTTT
1 TCAAAAGCACTTC
73267137 TCAAAAGCA
1 TCAAAAGCA
73267146 TTGCCAAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.43, C:0.23, G:0.09, T:0.26
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:73269215 original size:13 final size:13
Alignment explanation
Indices: 73269197--73269254 Score: 61
Period size: 13 Copynumber: 4.8 Consensus size: 13
73269187 CAACAACTTC
73269197 ACTAAACCACTCT
1 ACTAAACCACTCT
73269210 ACTAAACCAC-C-
1 ACTAAACCACTCT
* *
73269221 -C-CAACCACCCT
1 ACTAAACCACTCT
*
73269232 ACTAAACCACTCC
1 ACTAAACCACTCT
73269245 ACTAAACCAC
1 ACTAAACCAC
73269255 CCCAACCACT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 6 0.16
10 2 0.05
12 2 0.05
13 27 0.73
ACGTcount: A:0.40, C:0.47, G:0.00, T:0.14
Consensus pattern (13 bp):
ACTAAACCACTCT
Found at i:73269225 original size:35 final size:35
Alignment explanation
Indices: 73269179--73269269 Score: 130
Period size: 35 Copynumber: 2.6 Consensus size: 35
73269169 AAACGACTCC
* * * *
73269179 AACCACTCCAACAACTTCACTAAACCACTCTACTA
1 AACCACCCCAACCACTCCACTAAACCACTCCACTA
73269214 AACCACCCCAACCAC-CCTACTAAACCACTCCACTA
1 AACCACCCCAACCACTCC-ACTAAACCACTCCACTA
73269249 AACCACCCCAACCACTCCACT
1 AACCACCCCAACCACTCCACT
73269270 TGCCTACAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
34 1 0.02
35 47 0.94
36 2 0.04
ACGTcount: A:0.37, C:0.48, G:0.00, T:0.14
Consensus pattern (35 bp):
AACCACCCCAACCACTCCACTAAACCACTCCACTA
Found at i:73269678 original size:3 final size:3
Alignment explanation
Indices: 73269651--73269739 Score: 53
Period size: 3 Copynumber: 29.3 Consensus size: 3
73269641 GTTGAGAGCT
* * * *
73269651 TTA TT- TTA TTA TTT TTT TTA CTA TTA TT- TATA TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
73269695 TT- TCTCA TATA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA TTA
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
73269739 T
1 T
73269740 ATCATTATAT
Statistics
Matches: 70, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
2 7 0.10
3 53 0.76
4 8 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:73269687 original size:12 final size:12
Alignment explanation
Indices: 73269651--73269739 Score: 76
Period size: 12 Copynumber: 7.3 Consensus size: 12
73269641 GTTGAGAGCT
73269651 TTATTT-TATTA
1 TTATTTATATTA
* * *
73269662 TTTTTTTTACTA
1 TTATTTATATTA
73269674 TTATTTATATTA
1 TTATTTATATTA
*
73269686 TTACTATTAT-TTC
1 TTA-T-TTATATTA
*
73269699 TCATATATATATTA
1 T--TATTTATATTA
73269713 TTATTTATATTA
1 TTATTTATATTA
73269725 TTA-TTATATTA
1 TTATTTATATTA
73269736 TTAT
1 TTAT
73269740 ATCATTATAT
Statistics
Matches: 62, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
11 16 0.26
12 29 0.47
13 7 0.11
14 8 0.13
15 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.65
Consensus pattern (12 bp):
TTATTTATATTA
Found at i:73269729 original size:18 final size:18
Alignment explanation
Indices: 73269651--73269731 Score: 80
Period size: 18 Copynumber: 4.6 Consensus size: 18
73269641 GTTGAGAGCT
73269651 TTATT-TTATTATTT-T-
1 TTATTATTATTATTTATA
*
73269666 TT-TTACTATTATTTATA
1 TTATTATTATTATTTATA
* *
73269683 TTATTACTATTATTTCTCA
1 TTATTATTATTATTTAT-A
73269702 TATATATATTATTATTTATA
1 T-TAT-TATTATTATTTATA
73269722 TTATTATTAT
1 TTATTATTAT
73269732 ATTATTATAT
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
14 2 0.04
15 10 0.18
16 1 0.02
17 2 0.04
18 19 0.35
19 5 0.09
20 5 0.09
21 11 0.20
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (18 bp):
TTATTATTATTATTTATA
Found at i:73269736 original size:16 final size:17
Alignment explanation
Indices: 73269672--73269749 Score: 67
Period size: 16 Copynumber: 4.6 Consensus size: 17
73269662 TTTTTTTTAC
73269672 TATTATTTATATTAT-TA
1 TATTA-TTATATTATATA
*
73269689 CTATTATT-TCTCATATATA
1 -TATTATTATAT--TATATA
73269708 TATTATTAT-TTATAT-
1 TATTATTATATTATATA
73269723 TATTATTATATTAT-TA
1 TATTATTATATTATATA
*
73269739 TATCATTATAT
1 TATTATTATAT
73269750 CCAACCCAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
15 10 0.19
16 21 0.40
17 2 0.04
18 16 0.31
19 3 0.06
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (17 bp):
TATTATTATATTATATA
Found at i:73269746 original size:11 final size:10
Alignment explanation
Indices: 73269672--73269747 Score: 56
Period size: 11 Copynumber: 7.6 Consensus size: 10
73269662 TTTTTTTTAC
73269672 TATTATT-TA
1 TATTATTATA
73269681 TATTATTACTA
1 TATTATTA-TA
73269692 TTATT-TCTCATA
1 -TATTAT-T-ATA
73269704 TA-TA-TAT-
1 TATTATTATA
73269711 TATTATT-TA
1 TATTATTATA
73269720 TATTATTATTA
1 TATTATTA-TA
73269731 TATTATTATA
1 TATTATTATA
73269741 TCATTAT
1 T-ATTAT
73269748 ATCCAACCCA
Statistics
Matches: 55, Mismatches: 0, Indels: 22
0.71 0.00 0.29
Matches are distributed among these distances:
7 2 0.04
8 5 0.09
9 16 0.29
10 4 0.07
11 20 0.36
12 7 0.13
13 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (10 bp):
TATTATTATA
Found at i:73270728 original size:8 final size:8
Alignment explanation
Indices: 73270694--73270753 Score: 68
Period size: 8 Copynumber: 7.5 Consensus size: 8
73270684 TAATGATGTG
*
73270694 AATAATAA
1 AATATTAA
73270702 AATATATAA
1 AATAT-TAA
73270711 AATA-TAA
1 AATATTAA
73270718 AATATTAA
1 AATATTAA
*
73270726 AATATCAA
1 AATATTAA
*
73270734 AATATCAA
1 AATATTAA
*
73270742 AATATTAG
1 AATATTAA
73270750 AATA
1 AATA
73270754 ATAATAATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
7 7 0.15
8 32 0.70
9 7 0.15
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (8 bp):
AATATTAA
Found at i:73270971 original size:22 final size:24
Alignment explanation
Indices: 73270908--73270972 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
73270898 CGTGATAATA
*
73270908 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
73270933 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
73270956 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
73270973 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:73271020 original size:23 final size:23
Alignment explanation
Indices: 73270994--73271124 Score: 65
Period size: 25 Copynumber: 5.6 Consensus size: 23
73270984 GAAAAAAAAT
73270994 TATATAAATAATATAATATTAAA
1 TATATAAATAATATAATATTAAA
* * *
73271017 TATATATACATAAAATAGTATAAAA
1 TATATA-A-ATAATATAATATTAAA
*
73271042 TATATATACGTAATATAGA-ATTTAAA
1 TATATA-A-ATAATATA-ATA-TTAAA
** *
73271068 -ATATACCTAATAT-AT-TAAAA
1 TATATAAATAATATAATATTAAA
* *
73271088 GAATATATATAATATAATATTAAGA
1 -TATATAAATAATATAATATTAA-A
*
73271113 AATAT-AATAATA
1 TATATAAATAATA
73271125 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 14, Indels: 20
0.71 0.12 0.17
Matches are distributed among these distances:
20 4 0.05
21 1 0.01
22 11 0.13
23 20 0.24
24 9 0.11
25 35 0.42
26 4 0.05
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.36
Consensus pattern (23 bp):
TATATAAATAATATAATATTAAA
Found at i:73271024 original size:25 final size:25
Alignment explanation
Indices: 73270989--73271107 Score: 90
Period size: 25 Copynumber: 5.0 Consensus size: 25
73270979 ATGTAGAAAA
*
73270989 AAAAT-TATATAAATAATATAATAT
1 AAAATATATATACATAATATAATAT
* * *
73271013 TAAATATATATACATAAAATAGTAT
1 AAAATATATATACATAATATAATAT
*
73271038 AAAATATATATACGTAATATAGA-AT
1 AAAATATATATACATAATATA-ATAT
** *
73271063 TTAA-A-ATATACCTAATAT-AT-T
1 AAAATATATATACATAATATAATAT
* *
73271084 AAAAGA-ATATATATAATATAATAT
1 AAAATATATATACATAATATAATAT
73271108 TAAGAAATAT
Statistics
Matches: 74, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
21 4 0.05
22 12 0.16
23 14 0.19
24 6 0.08
25 38 0.51
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.36
Consensus pattern (25 bp):
AAAATATATATACATAATATAATAT
Found at i:73271692 original size:30 final size:30
Alignment explanation
Indices: 73271658--73271746 Score: 160
Period size: 30 Copynumber: 3.0 Consensus size: 30
73271648 TGGAGCAAGT
*
73271658 GTGGCTAGTGGATTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
*
73271688 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGT
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
73271718 GTGGCTAGTGGAGTTGGTGGTGGAAAAGG
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGG
73271747 CTAAGATTTA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.21, C:0.03, G:0.49, T:0.26
Consensus pattern (30 bp):
GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
Found at i:73272640 original size:15 final size:15
Alignment explanation
Indices: 73272607--73272654 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
73272597 TTGATTTTTT
* *
73272607 AAAAAGCAGAATTTG
1 AAAAAGCAAAAATTG
*
73272622 -AAAAGCATAAATTG
1 AAAAAGCAAAAATTG
*
73272636 AAAAAACAAAAATTG
1 AAAAAGCAAAAATTG
73272651 AAAA
1 AAAA
73272655 TACCTCAGCG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.17
Consensus pattern (15 bp):
AAAAAGCAAAAATTG
Found at i:73272708 original size:103 final size:105
Alignment explanation
Indices: 73272543--73272743 Score: 284
Period size: 103 Copynumber: 1.9 Consensus size: 105
73272533 AAAACAGATT
73272543 TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTTT
1 TTGAAAATACCTCGACA-GTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTT
* * *
73272607 AAAAAGCAGAATTTGAAAAGCATAAATTGAAAAAACAAAAA
65 AAAAAGCAGAAATTGAAAAGCAGAAATCGAAAAAACAAAAA
*
73272648 TTGAAAATACCTC-AGC-GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TTGAAAATACCTCGA-CAGTGACCC-GAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTT
* * *
73272710 TGAAGAGCAGAAATTGGAAAGCAGAAATCGAAAA
64 TAAAAAGCAGAAATTGAAAAGCAGAAATCGAAAA
73272744 TACCTCAGCG
Statistics
Matches: 86, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
102 3 0.03
103 35 0.41
104 34 0.40
105 14 0.16
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (105 bp):
TTGAAAATACCTCGACAGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTA
AAAAGCAGAAATTGAAAAGCAGAAATCGAAAAAACAAAAA
Found at i:73272770 original size:89 final size:89
Alignment explanation
Indices: 73272618--73273709 Score: 1824
Period size: 89 Copynumber: 12.2 Consensus size: 89
73272608 AAAAGCAGAA
* * *
73272618 TTTGAAAAGCATAAATTGAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTC
1 TTTGAAGAGCAGAAATTG-AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTC
73272683 ACCTCTCGCAATATGAGTTGATTTT
65 ACCTCTCGCAATATGAGTTGATTTT
* * * *
73272708 TTTGAAGAGCAGAAATTGGAAAGCAGAAATCGAAAATACCTCAGCGTGCCCTGTGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
*
73272773 TCTCTCGCAATATGAGTTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
* *
73272797 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACATCAGCGTGCCCTGAGGCTCAACTCG
1 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
73272862 CCTCTCGCAATATGAGTTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
* * * *
73272886 TTTGAAGAGCAGAAATTGAAAAACATAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
*
73272951 CCTCTCGCAATATGAGCTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
* * * *
73272975 TTTGAAGAGCAGAAATTGGAAAGCAGAAATCGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
73273040 CCTCTCGCAATATGAGTTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
*
73273064 TTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
73273129 CCTCTCGCAATATGAGTTGATTTTT
66 CCTCTCGCAATATGAGTTGA-TTTT
* * *
73273154 TTTGAAGAGCAGAAATTGGAAAGCAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
73273219 CCTCTCGCAATATGAGTTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
*
73273243 TTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
73273308 CCTCTCGCAATATGAGTTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
* * * * *
73273332 TTTGAAGAGCAGAAATTGAAAAACATAAATTGAAATTACCTCAGCGTGTCTTAAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
*
73273397 CCTCTCGCAATATGAGCTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
* *
73273421 TTTGAAGAGCAGAAATTGGAAAACAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
*
73273486 CCTCTGGCAATATGAGTTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
*
73273510 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
73273575 CCTCTCGCAATATGAGTTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
* * *
73273599 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
*
73273664 CCTCTCGCAATATGAGCTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
73273688 TTTGAAGAGCAGAAATTGAAAA
1 TTTGAAGAGCAGAAATTGAAAA
73273710 TACCTCAGCG
Statistics
Matches: 935, Mismatches: 66, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
89 834 0.89
90 101 0.11
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.27
Consensus pattern (89 bp):
TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
CCTCTCGCAATATGAGTTGATTTT
Found at i:73272823 original size:14 final size:14
Alignment explanation
Indices: 73272806--73272832 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73272796 TTTTGAAGAG
73272806 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
73272820 CAGAAATTGAAAA
1 CAGAAATTGAAAA
73272833 TACATCAGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:73273536 original size:14 final size:14
Alignment explanation
Indices: 73273519--73273545 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73273509 TTTTGAAGAG
73273519 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
73273533 CAGAAATTGAAAA
1 CAGAAATTGAAAA
73273546 TACCTCAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:73285719 original size:16 final size:16
Alignment explanation
Indices: 73285698--73285752 Score: 71
Period size: 15 Copynumber: 3.6 Consensus size: 16
73285688 GATGTGAATA
73285698 ATAAAATATATAAAAT
1 ATAAAATATATAAAAT
73285714 AT-AAA-ATATAAAAT
1 ATAAAATATATAAAAT
*
73285728 ATAAAATAT-CAAAAT
1 ATAAAATATATAAAAT
73285743 ATCAAAATAT
1 AT-AAAATAT
73285753 TAGAATAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
14 11 0.31
15 13 0.37
16 11 0.31
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (16 bp):
ATAAAATATATAAAAT
Found at i:73285721 original size:21 final size:22
Alignment explanation
Indices: 73285697--73285752 Score: 80
Period size: 21 Copynumber: 2.5 Consensus size: 22
73285687 TGATGTGAAT
73285697 AATA-AAATATATAAAATAT-AA
1 AATATAAA-ATATAAAATATCAA
73285718 AATATAAAATATAAAATATCAA
1 AATATAAAATATAAAATATCAA
73285740 AATATCAAAATAT
1 AATAT-AAAATAT
73285753 TAGAATAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
21 15 0.47
22 10 0.31
23 7 0.22
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.29
Consensus pattern (22 bp):
AATATAAAATATAAAATATCAA
Found at i:73285743 original size:8 final size:7
Alignment explanation
Indices: 73285705--73285752 Score: 78
Period size: 7 Copynumber: 6.6 Consensus size: 7
73285695 ATAATAAAAT
73285705 ATATAAA
1 ATATAAA
73285712 ATATAAA
1 ATATAAA
73285719 ATATAAA
1 ATATAAA
73285726 ATATAAA
1 ATATAAA
73285733 ATATCAAA
1 ATAT-AAA
73285741 ATATCAAA
1 ATAT-AAA
73285749 ATAT
1 ATAT
73285753 TAGAATAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
7 25 0.62
8 15 0.38
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (7 bp):
ATATAAA
Found at i:73285759 original size:16 final size:15
Alignment explanation
Indices: 73285698--73285759 Score: 81
Period size: 16 Copynumber: 4.1 Consensus size: 15
73285688 GATGTGAATA
73285698 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
73285714 ATAAAATA-TAAAAT
1 ATAAAATATTAAAAT
*
73285728 ATAAAATATCAAAAT
1 ATAAAATATTAAAAT
*
73285743 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
73285759 A
1 A
73285760 ATAATAATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
14 14 0.34
15 7 0.17
16 20 0.49
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:73285954 original size:22 final size:23
Alignment explanation
Indices: 73285898--73285958 Score: 70
Period size: 24 Copynumber: 2.7 Consensus size: 23
73285888 GATAATATTA
*
73285898 AAAATATGTACATAATATAGTGTT
1 AAAATATATACATAATATAG-GTT
* *
73285922 AAAAAACATACATAATATA-GTT
1 AAAATATATACATAATATAGGTT
*
73285944 AAGATATATACATAA
1 AAAATATATACATAA
73285959 GATAACATGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
22 15 0.48
24 16 0.52
ACGTcount: A:0.54, C:0.07, G:0.08, T:0.31
Consensus pattern (23 bp):
AAAATATATACATAATATAGGTT
Found at i:73286008 original size:25 final size:25
Alignment explanation
Indices: 73285980--73286113 Score: 77
Period size: 25 Copynumber: 5.6 Consensus size: 25
73285970 GAAAAAATAT
73285980 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * * *
73286005 ATATATACATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* *
73286030 ATATATATACGTAATATAGA-ATTTAA-
1 ATATATA-A-ATAATATA-ATATTAAAG
** *
73286056 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
73286078 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
73286101 AAATAT-AATAATA
1 ATATATAAATAATA
73286114 ACAAAAAAAA
Statistics
Matches: 82, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
21 4 0.05
22 12 0.15
23 18 0.22
24 5 0.06
25 32 0.39
26 1 0.01
27 10 0.12
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:73286035 original size:27 final size:27
Alignment explanation
Indices: 73285929--73286048 Score: 86
Period size: 27 Copynumber: 4.5 Consensus size: 27
73285919 GTTAAAAAAC
* *
73285929 ATACATAATATAGT-TAAGATATATAC
1 ATACATAATATAGTATAAAATATATAT
* * *
73285955 ATAAGATAACAT-GTAGAAAAAATATATAT
1 AT-ACATAATATAGT--ATAAAATATATAT
* * * *
73285984 ATAAATAATATAATAT-TAA-AGATAT
1 ATACATAATATAGTATAAAATATATAT
*
73286009 ATACATAAAATAGTATAAAATATATAT
1 ATACATAATATAGTATAAAATATATAT
*
73286036 ATACGTAATATAG
1 ATACATAATATAG
73286049 AATTTAAAAT
Statistics
Matches: 69, Mismatches: 18, Indels: 13
0.69 0.18 0.13
Matches are distributed among these distances:
25 18 0.26
26 8 0.12
27 24 0.35
28 7 0.10
29 12 0.17
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (27 bp):
ATACATAATATAGTATAAAATATATAT
Found at i:73286681 original size:30 final size:30
Alignment explanation
Indices: 73286647--73286737 Score: 164
Period size: 30 Copynumber: 3.0 Consensus size: 30
73286637 AATGGAGCAA
*
73286647 GTGTGGCTAGTGGATTTGGTCGTGGAAAAG
1 GTGTGGCTAGTGGATTTGGTGGTGGAAAAG
73286677 GTGTGGCTAGTGGATTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGATTTGGTGGTGGAAAAG
*
73286707 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGATTTGGTGGTGGAAAAG
73286737 G
1 G
73286738 CTAAGATTGT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 59 1.00
ACGTcount: A:0.20, C:0.04, G:0.47, T:0.29
Consensus pattern (30 bp):
GTGTGGCTAGTGGATTTGGTGGTGGAAAAG
Found at i:73287674 original size:16 final size:17
Alignment explanation
Indices: 73287653--73287687 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
73287643 TAATGTCTAG
73287653 GAAAATTA-TTAATTGA
1 GAAAATTAGTTAATTGA
73287669 GAAAATTAGTTTAATTGA
1 GAAAATTAG-TTAATTGA
73287687 G
1 G
73287688 GGGTTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.37
Consensus pattern (17 bp):
GAAAATTAGTTAATTGA
Found at i:73291220 original size:19 final size:19
Alignment explanation
Indices: 73291198--73291244 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
73291188 CTTCCTTTCT
*
73291198 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTACA-ACA
73291217 TTTGCATTACATTACAACA
1 TTTGCATTACATTACAACA
*
73291236 TCTGCATTA
1 TTTGCATTA
73291245 AACTTTCACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.40
Consensus pattern (19 bp):
TTTGCATTACATTACAACA
Found at i:73292244 original size:32 final size:32
Alignment explanation
Indices: 73292208--73292272 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
73292198 TGTATGCATT
73292208 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
73292240 TTAGCATTTTAATAGTTAATGGATTATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
73292272 T
1 T
73292273 GGTAAGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:73297464 original size:15 final size:15
Alignment explanation
Indices: 73297444--73297478 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
73297434 AGAGAGCCCT
*
73297444 AAAAAAACACACACAA
1 AAAAAAACA-AAACAA
73297460 AAAAAAACAAAACAA
1 AAAAAAACAAAACAA
73297475 AAAA
1 AAAA
73297479 CAAAAAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAACAAAACAA
Found at i:73297920 original size:53 final size:52
Alignment explanation
Indices: 73297817--73297920 Score: 136
Period size: 53 Copynumber: 2.0 Consensus size: 52
73297807 GTCCAAATAA
* * * * *
73297817 ATTTTCTTCTTATTGCATTGCTATCTTTGATTAAATCATTCGTTTTGAGTTG
1 ATTTCCTTCTTATTGCATTGCAATCTTTGATTAAATCATCCATTTCGAGTTG
* *
73297869 ATTTCCTTCTTATTGCATTTGCAATCTTTGATTAATTTATCCATTTCGAGTT
1 ATTTCCTTCTTATTGCA-TTGCAATCTTTGATTAAATCATCCATTTCGAGTT
73297921 ATGCTCCTAA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
52 16 0.36
53 28 0.64
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (52 bp):
ATTTCCTTCTTATTGCATTGCAATCTTTGATTAAATCATCCATTTCGAGTTG
Found at i:73299322 original size:205 final size:205
Alignment explanation
Indices: 73298818--73299296 Score: 751
Period size: 205 Copynumber: 2.3 Consensus size: 205
73298808 ATCAGGCGGA
*
73298818 GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
*
73298883 TTGGCATTTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCAACGGAAGGCAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCAACGGAAGGCAGA
* * *
73298948 CACATAGCAGATCCAACATTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
131 CACATAGCAGATCCAACATTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCTTG
73299013 TGCTTACAAG
196 TGCTTACAAG
* * *
73299023 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTAAAGCAAATCTAATATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
* * * * * *
73299088 TTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTCTGGCATCTCCACTTCGATGGAGGGTAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCAACGGAAGGCAGA
* *
73299153 CACATAGCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATTCTTG
131 CACATAGCAGATCCAACATTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCTTG
*
73299218 TGCTTACAAT
196 TGCTTACAAG
** * * * *
73299228 GAGCAAATCGAAGACATAATTGATTTCGCTTTCACGTGTTTATGTTGAAGCAAATCCAAGATAAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
73299293 TTGG
66 TTGG
73299297 GGTCTCTATA
Statistics
Matches: 248, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
205 248 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (205 bp):
GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCAACGGAAGGCAGA
CACATAGCAGATCCAACATTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCTTG
TGCTTACAAG
Found at i:73299468 original size:132 final size:132
Alignment explanation
Indices: 73299315--73300296 Score: 1635
Period size: 132 Copynumber: 7.4 Consensus size: 132
73299305 TAGCGGCGGA
* *
73299315 GAACAAATCAAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
* *
73299380 TATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCTTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
73299445 GG
131 GG
* * *
73299447 GAACAGATCGAAGATAACAGATCTGACATTCTTGTGCTTACGGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
* * **
73299512 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGCACTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
73299577 GG
131 GG
*
73299579 GAACAGATTGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
*
73299644 CATGGCATCCCTGTGCTTATAGGGAACAAGTTAAAAACAGCAGATTTGGCATCCCTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
73299709 GG
131 GG
*
73299711 GAACAGATCAAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
* *
73299776 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
73299841 GG
131 GG
*
73299843 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACTGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
73299908 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
73299973 GG
131 GG
73299975 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
*
73300040 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAAATTTGGCATCCCTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
73300105 GG
131 GG
* **
73300107 GAACAGATCGAATATAGCAGATCTGACATTCCTGTGCTTATGGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
* * * *
73300172 CATGGAATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
73300237 GG
131 GG
* * * * * * ** *
73300239 GAACA-AGTTGAAGACAGCAGATTTGGCATCCCTGTGTTTATGGGGAA-CAGATCGAAGA
1 GAACAGA-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGA
73300297 AGCAGATCAA
Statistics
Matches: 802, Mismatches: 47, Indels: 3
0.94 0.06 0.00
Matches are distributed among these distances:
131 12 0.01
132 790 0.99
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (132 bp):
GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
GG
Found at i:73300599 original size:13 final size:13
Alignment explanation
Indices: 73300581--73300679 Score: 127
Period size: 13 Copynumber: 7.9 Consensus size: 13
73300571 CAACCGCTCC
*
73300581 AACCACTTCACTA
1 AACCACTCCACTA
73300594 AACCACTCCACTA
1 AACCACTCCACTA
73300607 AACCACTCCACTA
1 AACCACTCCACTA
*
73300620 AACCACTACACTA
1 AACCACTCCACTA
*
73300633 AACCACTCGACTA
1 AACCACTCCACTA
73300646 AACCAC-CC-C--
1 AACCACTCCACTA
73300655 AACCAC-CCTACTA
1 AACCACTCC-ACTA
73300668 AACCACTCCACT
1 AACCACTCCACT
73300680 TGCCTTCAAA
Statistics
Matches: 76, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
9 8 0.11
11 2 0.03
12 1 0.01
13 63 0.83
14 2 0.03
ACGTcount: A:0.38, C:0.45, G:0.01, T:0.15
Consensus pattern (13 bp):
AACCACTCCACTA
Found at i:73301087 original size:3 final size:3
Alignment explanation
Indices: 73301076--73301155 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
73301066 TTTATTTTTT
* *
73301076 TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TT- TCTCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-T-A
73301121 TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
73301156 ATATGCCCTC
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 7 0.11
3 46 0.74
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:73301092 original size:9 final size:9
Alignment explanation
Indices: 73301067--73301155 Score: 56
Period size: 9 Copynumber: 9.4 Consensus size: 9
73301057 GAGCTTTGTT
*
73301067 TTATTTTTT
1 TTATTTTTA
73301076 TTA-TTTTA
1 TTATTTTTA
73301084 TTATTTTTA
1 TTATTTTTA
*
73301093 CTATTATTTA
1 TTATT-TTTA
*
73301103 -TATTATTA
1 TTATTTTTA
*
73301111 TTATTTCTCA
1 TTATTT-TTA
*
73301121 TGTATATATTA
1 T-TAT-TTTTA
*
73301132 TTATTTATA
1 TTATTTTTA
73301141 TTATTATTATA
1 TTATT-TT-TA
73301152 TTAT
1 TTAT
73301156 ATATGCCCTC
Statistics
Matches: 62, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
8 10 0.16
9 28 0.45
10 11 0.18
11 12 0.19
12 1 0.02
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.67
Consensus pattern (9 bp):
TTATTTTTA
Found at i:73301097 original size:17 final size:14
Alignment explanation
Indices: 73301065--73301116 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
73301055 GAGAGCTTTG
73301065 TTTTATTTTTTTTA
1 TTTTATTTTTTTTA
*
73301079 TTTTATTATTTTTA
1 TTTTATTTTTTTTA
* * *
73301093 CTATTATTTATATTA
1 -TTTTATTTTTTTTA
73301108 TTATTATTT
1 TT-TTATTT
73301117 CTCATGTATA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
14 14 0.47
15 16 0.53
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTTATTTTTTTTA
Found at i:73301115 original size:18 final size:18
Alignment explanation
Indices: 73301080--73301159 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
73301070 TTTTTTTTAT
* *
73301080 TTTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTA
73301099 TTTATATTATTATTATT-
1 TTTATATTATTATTATTA
* *
73301116 TCTCAT-GTATATATTATTA
1 T-TTATATTAT-TATTATTA
73301135 TTTATATTATTATTA-TA
1 TTTATATTATTATTATTA
73301152 TTATATAT
1 TT-TATAT
73301160 GCCCTCTCCA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
17 8 0.16
18 34 0.68
19 8 0.16
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTATATTATTATTATTA
Found at i:73301142 original size:12 final size:12
Alignment explanation
Indices: 73301075--73301155 Score: 78
Period size: 12 Copynumber: 6.8 Consensus size: 12
73301065 TTTTATTTTT
*
73301075 TTTATTTTATTA
1 TTTATATTATTA
* *
73301087 TTTTTACTATTA
1 TTTATATTATTA
73301099 TTTATATTATTA
1 TTTATATTATTA
* *
73301111 -TTAT-TTCTCA
1 TTTATATTATTA
73301121 TGTATATATTATTA
1 T-T-TATATTATTA
73301135 TTTATATTATTA
1 TTTATATTATTA
73301147 -TTATATTAT
1 TTTATATTAT
73301156 ATATGCCCTC
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
10 4 0.07
11 13 0.23
12 30 0.54
13 4 0.07
14 5 0.09
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:73301236 original size:3 final size:3
Alignment explanation
Indices: 73301230--73301276 Score: 51
Period size: 3 Copynumber: 15.0 Consensus size: 3
73301220 TTCTGACTAC
*
73301230 TAT TAT TAT ATAT GTAT TAT TGT T-T GTAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
73301277 CACCCCTATT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 1 0.03
3 31 0.79
4 7 0.18
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:73301271 original size:12 final size:13
Alignment explanation
Indices: 73301230--73301276 Score: 62
Period size: 12 Copynumber: 3.7 Consensus size: 13
73301220 TTCTGACTAC
73301230 TATTATTATATATG
1 TATTATTAT-TATG
*
73301244 TATTATTGTT-TG
1 TATTATTATTATG
73301256 TATTATTATTAT-
1 TATTATTATTATG
73301268 TATTATTAT
1 TATTATTAT
73301277 CACCCCTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 20 0.67
13 2 0.07
14 8 0.27
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (13 bp):
TATTATTATTATG
Found at i:73301516 original size:2 final size:2
Alignment explanation
Indices: 73301511--73301548 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
73301501 GTATTTCTAT
* *
73301511 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
73301549 GTATTATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:73301555 original size:12 final size:11
Alignment explanation
Indices: 73301508--73301555 Score: 57
Period size: 10 Copynumber: 4.5 Consensus size: 11
73301498 TGTGTATTTC
*
73301508 TATTATATACA
1 TATTATATATA
73301519 TA-TATATATA
1 TATTATATATA
73301529 TA-TATATATA
1 TATTATATATA
73301539 T-TTATATATA
1 TATTATATATA
73301549 GTATTAT
1 -TATTAT
73301556 TATTTACTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
10 26 0.79
11 3 0.09
12 4 0.12
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (11 bp):
TATTATATATA
Found at i:73303793 original size:15 final size:14
Alignment explanation
Indices: 73303773--73303822 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
73303763 TATTTAGGCA
73303773 ATTTTTGAAGTTTTG
1 ATTTTTGAA-TTTTG
* * *
73303788 ATTTTTTATTTTTT
1 ATTTTTGAATTTTG
73303802 ATTTTTGAATTTTG
1 ATTTTTGAATTTTG
73303816 ACTTTTT
1 A-TTTTT
73303823 TGTTTTTGGG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.18, C:0.02, G:0.10, T:0.70
Consensus pattern (14 bp):
ATTTTTGAATTTTG
Found at i:73303806 original size:29 final size:29
Alignment explanation
Indices: 73303773--73303829 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
73303763 TATTTAGGCA
73303773 ATTTTTGAAGTTTTGA-TTTTTTATTTTTT
1 ATTTTTGAA-TTTTGACTTTTTTATTTTTT
*
73303802 ATTTTTGAATTTTGACTTTTTTGTTTTT
1 ATTTTTGAATTTTGACTTTTTTATTTTT
73303830 GGGTTCGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 6 0.23
29 20 0.77
ACGTcount: A:0.16, C:0.02, G:0.11, T:0.72
Consensus pattern (29 bp):
ATTTTTGAATTTTGACTTTTTTATTTTTT
Found at i:73303821 original size:22 final size:21
Alignment explanation
Indices: 73303783--73303830 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
73303773 ATTTTTGAAG
* *
73303783 TTTTGATTTTTTATTTTTTAT
1 TTTTGAATTTTGATTTTTTAT
*
73303804 TTTTGAATTTTGACTTTTTTGT
1 TTTTGAATTTTGA-TTTTTTAT
73303826 TTTTG
1 TTTTG
73303831 GGTTCGTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.12, C:0.02, G:0.10, T:0.75
Consensus pattern (21 bp):
TTTTGAATTTTGATTTTTTAT
Found at i:73313624 original size:12 final size:12
Alignment explanation
Indices: 73313607--73313674 Score: 54
Period size: 12 Copynumber: 5.8 Consensus size: 12
73313597 CTTTCTCCCT
73313607 TTTTTCACCTCA
1 TTTTTCACCTCA
*
73313619 TTTTTCACCTGAA
1 TTTTTCACCT-CA
* *
73313632 TTTTTCGATCGC-
1 TTTTTC-ACCTCA
*
73313644 TTTCTC-CCT--
1 TTTTTCACCTCA
73313653 TTTTTCACCTCA
1 TTTTTCACCTCA
73313665 TTTTTCACCT
1 TTTTTCACCT
73313675 GAATTTTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
9 5 0.12
10 4 0.09
12 25 0.58
13 7 0.16
14 2 0.05
ACGTcount: A:0.13, C:0.31, G:0.04, T:0.51
Consensus pattern (12 bp):
TTTTTCACCTCA
Found at i:73313636 original size:46 final size:46
Alignment explanation
Indices: 73313585--73313683 Score: 189
Period size: 46 Copynumber: 2.2 Consensus size: 46
73313575 CTTTCTTCTC
73313585 ATTTTTTGATCGCTTTCTCCCTTTTTTCACCTCATTTTTCACCTGA
1 ATTTTTTGATCGCTTTCTCCCTTTTTTCACCTCATTTTTCACCTGA
*
73313631 ATTTTTCGATCGCTTTCTCCCTTTTTTCACCTCATTTTTCACCTGA
1 ATTTTTTGATCGCTTTCTCCCTTTTTTCACCTCATTTTTCACCTGA
73313677 ATTTTTT
1 ATTTTTT
73313684 TCCTGAAATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.13, C:0.27, G:0.06, T:0.54
Consensus pattern (46 bp):
ATTTTTTGATCGCTTTCTCCCTTTTTTCACCTCATTTTTCACCTGA
Found at i:73315261 original size:47 final size:47
Alignment explanation
Indices: 73315207--73315300 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
73315197 TGTTTAAACC
73315207 CTAAAACTAATATTGAAATACATATTTATTTAAGCTATTACATTGGA
1 CTAAAACTAATATTGAAATACATATTTATTTAAGCTATTACATTGGA
73315254 CTAAAACTAATATTGAAATACATATTTATTTAAGCTATTACATTGGA
1 CTAAAACTAATATTGAAATACATATTTATTTAAGCTATTACATTGGA
73315301 TTAGAATCAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.38
Consensus pattern (47 bp):
CTAAAACTAATATTGAAATACATATTTATTTAAGCTATTACATTGGA
Found at i:73316658 original size:22 final size:22
Alignment explanation
Indices: 73316624--73316667 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
73316614 TATAATCTAT
*
73316624 TTTTATAAAAAAATATTTAAAA
1 TTTTATAAAAAAATATATAAAA
73316646 TTTTA-AAAGAAAATATATAAAA
1 TTTTATAAA-AAAATATATAAAA
73316668 ATCATATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
TTTTATAAAAAAATATATAAAA
Found at i:73330329 original size:45 final size:45
Alignment explanation
Indices: 73330280--73330365 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
73330270 TTTGTTTGCA
* * *
73330280 ATATATTCACCCAGAAAATAAGTTCCTAAAATGAATGAGATATCT
1 ATATATTCACACAGAAAACAAGTGCCTAAAATGAATGAGATATCT
** * *
73330325 ATATATTTGCATAGAAAACAAGTGCCTAAAATGAATTAGAT
1 ATATATTCACACAGAAAACAAGTGCCTAAAATGAATGAGAT
73330366 GTGTGCTTTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (45 bp):
ATATATTCACACAGAAAACAAGTGCCTAAAATGAATGAGATATCT
Found at i:73332033 original size:14 final size:14
Alignment explanation
Indices: 73332010--73332047 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
73332000 ATTAACACTG
73332010 CATATATATATGTA
1 CATATATATATGTA
* *
73332024 TATGTATATATGTA
1 CATATATATATGTA
73332038 CATATATATA
1 CATATATATA
73332048 GTTATTGTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (14 bp):
CATATATATATGTA
Found at i:73332853 original size:4 final size:4
Alignment explanation
Indices: 73332844--73332881 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
73332834 CCAAAGGTAG
*
73332844 ACAT ACAT ACAT ATAT ACAGT -CAT ACAT ACAT ACAT AC
1 ACAT ACAT ACAT ACAT ACA-T ACAT ACAT ACAT ACAT AC
73332882 TTTCTGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 1 0.03
4 28 0.93
5 1 0.03
ACGTcount: A:0.47, C:0.24, G:0.03, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:73334979 original size:22 final size:23
Alignment explanation
Indices: 73334954--73335014 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
73334944 GGGTCAAAAT
*
73334954 TAAATTATAAATTTTATAA-TAG
1 TAAATTATAAATTTTATAAGAAG
* * *
73334976 TAAAAATATAATTTTTA-AAGAAT
1 T-AAATTATAAATTTTATAAGAAG
73334999 TAAATTA-AAATTTTAT
1 TAAATTATAAATTTTAT
73335015 CATTTTTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
21 7 0.23
22 8 0.27
23 15 0.50
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.44
Consensus pattern (23 bp):
TAAATTATAAATTTTATAAGAAG
Found at i:73338517 original size:15 final size:15
Alignment explanation
Indices: 73338473--73338535 Score: 58
Period size: 15 Copynumber: 4.2 Consensus size: 15
73338463 AAGTTGAATC
73338473 AAATTAAAATATTAT-
1 AAATTAAAAT-TTATA
*
73338488 ATA-TAAAATTTTATA
1 AAATTAAAA-TTTATA
73338503 AAATTAAAATTTATA
1 AAATTAAAATTTATA
** *
73338518 ATTTTGAAATTTATA
1 AAATTAAAATTTATA
73338533 AAA
1 AAA
73338536 AAATAGTACA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
14 9 0.24
15 24 0.63
16 5 0.13
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (15 bp):
AAATTAAAATTTATA
Found at i:73339754 original size:29 final size:32
Alignment explanation
Indices: 73339721--73339782 Score: 76
Period size: 31 Copynumber: 2.0 Consensus size: 32
73339711 TTATTAAAAG
73339721 TAAT-ATAAAATTT-TATAAATTTT-ACATAT
1 TAATAATAAAATTTATATAAATTTTGACATAT
** *
73339750 TAATAATTTATTTTATATAAATTTTGACATAT
1 TAATAATAAAATTTATATAAATTTTGACATAT
73339782 T
1 T
73339783 TGTATATTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 4 0.15
30 6 0.22
31 10 0.37
32 7 0.26
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.52
Consensus pattern (32 bp):
TAATAATAAAATTTATATAAATTTTGACATAT
Found at i:73344065 original size:133 final size:133
Alignment explanation
Indices: 73343817--73344077 Score: 352
Period size: 133 Copynumber: 2.0 Consensus size: 133
73343807 AAACTCACGT
* *
73343817 ATGTTCATGATTATAATATAATTTTTATAACTTGTATAAAAGTAATTTTTAAAAATGAATTTTGG
1 ATGTTCATGATTATAATATAATTTTTATAACTTGTATAAAAATAATTTTTAAAAATGAATTATGG
** ** * *
73343882 TATAATTATTTGTGTAATTACTCCAATTCTCACTCTTCCTCTAAGAATTGAAAAGTGTAATTGGA
66 TATAATTACCTGCATAATTACTCAAATTCTCACCCTTCCTCTAAGAATTGAAAAGTGTAATTGGA
73343947 TAC
131 TAC
* *
73343950 ATGTTCATGGTTATAATATAATTTTTATAACTTGTATAAAAATAATTTTTAAAATTTG-ATCTGA
1 ATGTTCATGATTATAATATAATTTTTATAACTTGTATAAAAATAATTTTTAAAA-ATGAAT-T--
73344014 AT-GTA-AATTACCTGCATAATTACTCAAATTCTCACCCTTTCCT-TAAG-ATTGAAAAGTGTAA
62 ATGGTATAATTACCTGCATAATTACTCAAATTCTCACCC-TTCCTCTAAGAATTGAAAAGTGTAA
73344075 TTG
126 TTG
73344078 AGTTGCTCCA
Statistics
Matches: 113, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
133 71 0.63
134 33 0.29
135 8 0.07
136 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (133 bp):
ATGTTCATGATTATAATATAATTTTTATAACTTGTATAAAAATAATTTTTAAAAATGAATTATGG
TATAATTACCTGCATAATTACTCAAATTCTCACCCTTCCTCTAAGAATTGAAAAGTGTAATTGGA
TAC
Found at i:73354729 original size:26 final size:26
Alignment explanation
Indices: 73354700--73354749 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
73354690 AAACCGATTA
73354700 AGATTAATTACAATAAATTAAATCTG
1 AGATTAATTACAATAAATTAAATCTG
* *
73354726 AGATTGATTACAGTAAATTAAATC
1 AGATTAATTACAATAAATTAAATC
73354750 AGTTGATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.48, C:0.08, G:0.10, T:0.34
Consensus pattern (26 bp):
AGATTAATTACAATAAATTAAATCTG
Found at i:73355768 original size:27 final size:28
Alignment explanation
Indices: 73355716--73355768 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
73355706 TTTATAAGTG
*
73355716 AAAGAAAATACATGCACTATGATGGTGA
1 AAAGAAAATACATGCACAATGATGGTGA
73355744 AAAGAAAATACATGCACAATG-TGGT
1 AAAGAAAATACATGCACAATGATGGT
73355769 CAATGACTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (28 bp):
AAAGAAAATACATGCACAATGATGGTGA
Found at i:73359610 original size:54 final size:54
Alignment explanation
Indices: 73359528--73359631 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
73359518 GATATCTAAA
* * * *
73359528 TTATTAACTTAATTTAATTTGATCCAAAGAATACGACAATTAGGAAAAAAAAAC
1 TTATTAACTTAATTTAATATAACCCAAAGAATACAACAATTAGGAAAAAAAAAC
* * *
73359582 TTATTAATTTAATTTAATATAACCCAAAGAATATAATAATTAGGAAAAAA
1 TTATTAACTTAATTTAATATAACCCAAAGAATACAACAATTAGGAAAAAA
73359632 CTATACACAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.52, C:0.09, G:0.08, T:0.32
Consensus pattern (54 bp):
TTATTAACTTAATTTAATATAACCCAAAGAATACAACAATTAGGAAAAAAAAAC
Found at i:73370129 original size:13 final size:13
Alignment explanation
Indices: 73370111--73370136 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73370101 TAAACTCAAG
73370111 TTTAATAATATAA
1 TTTAATAATATAA
73370124 TTTAATAATATAA
1 TTTAATAATATAA
73370137 AAAAGTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TTTAATAATATAA
Found at i:73370620 original size:5 final size:5
Alignment explanation
Indices: 73370610--73370641 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
73370600 CGAAATGTGA
73370610 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
73370642 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:73375059 original size:5 final size:5
Alignment explanation
Indices: 73375049--73375080 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
73375039 CAATTTGTGA
73375049 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
73375081 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:73375074 original size:9 final size:9
Alignment explanation
Indices: 73375050--73375080 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
73375040 AATTTGTGAA
73375050 AAATAAAAT
1 AAATAAAAT
73375059 AAAATAAAAT
1 -AAATAAAAT
73375069 AAATAAAAT
1 AAATAAAAT
73375078 AAA
1 AAA
73375081 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:73377874 original size:17 final size:18
Alignment explanation
Indices: 73377838--73377875 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
73377828 TAAAAAAATC
73377838 ATTTTAGTCATTCATTTAA
1 ATTTTAGTCA-TCATTTAA
*
73377857 ATTTTAGTC-TCTTTTAA
1 ATTTTAGTCATCATTTAA
73377874 AT
1 AT
73377876 CTTAAACTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
19 9 0.50
ACGTcount: A:0.29, C:0.11, G:0.05, T:0.55
Consensus pattern (18 bp):
ATTTTAGTCATCATTTAA
Found at i:73380290 original size:28 final size:28
Alignment explanation
Indices: 73380236--73380292 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
73380226 AAAATCCGTC
*
73380236 ATTTTATAAAATGAGAAATTATCTTTTA
1 ATTTTATAAAATGAGAAATAATCTTTTA
* *
73380264 ATTTTAT-AAATGATGATATAATTTTTTA
1 ATTTTATAAAATGA-GAAATAATCTTTTA
73380292 A
1 A
73380293 AAAATTATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (28 bp):
ATTTTATAAAATGAGAAATAATCTTTTA
Found at i:73386356 original size:26 final size:26
Alignment explanation
Indices: 73386327--73386381 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
73386317 TTAAAAATGG
*
73386327 TTAAAATAAAACATAAAGAATCAGTT
1 TTAAAATAAAACATAAAGAATCAGAT
73386353 TTAAAATAAAACATAAAGAATCAGAT
1 TTAAAATAAAACATAAAGAATCAGAT
73386379 TTA
1 TTA
73386382 CTTGAAACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.27
Consensus pattern (26 bp):
TTAAAATAAAACATAAAGAATCAGAT
Found at i:73392540 original size:19 final size:20
Alignment explanation
Indices: 73392516--73392559 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
73392506 CGTGAAAGTC
* *
73392516 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
73392535 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
73392555 -AATGC
1 TAATGC
73392560 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:73402505 original size:29 final size:30
Alignment explanation
Indices: 73402447--73402516 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 30
73402437 GTTTTAAAAT
*
73402447 TATATATGAATTTTGATTTAATGTAGAATTA
1 TATATATGAATTTTAATTTAATGTA-AATTA
**
73402478 TATATATGAATTTTAATTTGGTGT-AATTA
1 TATATATGAATTTTAATTTAATGTAAATTA
73402507 TATATATGAA
1 TATATATGAA
73402517 ACTCTAATTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 15 0.42
31 21 0.58
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.49
Consensus pattern (30 bp):
TATATATGAATTTTAATTTAATGTAAATTA
Found at i:73404250 original size:18 final size:18
Alignment explanation
Indices: 73404213--73404250 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
73404203 TTGGCCGTGG
*
73404213 ACCAAATTAAATATTGAA
1 ACCAAATTAAATATTCAA
73404231 ACCAAATTCAAATA-TCAA
1 ACCAAATT-AAATATTCAA
73404249 AC
1 AC
73404251 GAGGACAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.55, C:0.18, G:0.03, T:0.24
Consensus pattern (18 bp):
ACCAAATTAAATATTCAA
Found at i:73406981 original size:18 final size:19
Alignment explanation
Indices: 73406960--73407002 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
73406950 TTGTATTTTC
* *
73406960 AAAAAAAAATCAA-AGATA
1 AAAAAAAAACCAACAAATA
*
73406978 AAAAATAAACCAACAAATA
1 AAAAAAAAACCAACAAATA
73406997 AAAAAA
1 AAAAAA
73407003 TCCAAAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.79, C:0.09, G:0.02, T:0.09
Consensus pattern (19 bp):
AAAAAAAAACCAACAAATA
Found at i:73408092 original size:43 final size:42
Alignment explanation
Indices: 73408018--73408103 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 42
73408008 GGTGATCCTT
* *
73408018 CATGAATTTTGTTTGAGTATTCTAGACACCACTTGTTACAAA
1 CATGAATTTTATTTAAGTATTCTAGACACCACTTGTTACAAA
*
73408060 CATGAATTTTATTTAAGTTATTCTAGAGACCACTTGTTACAAA
1 CATGAATTTTATTTAAG-TATTCTAGACACCACTTGTTACAAA
73408103 C
1 C
73408104 CCTCTTTTAG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 15 0.38
43 25 0.62
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (42 bp):
CATGAATTTTATTTAAGTATTCTAGACACCACTTGTTACAAA
Found at i:73409283 original size:105 final size:106
Alignment explanation
Indices: 73409101--73409311 Score: 415
Period size: 105 Copynumber: 2.0 Consensus size: 106
73409091 GCAAACATAG
73409101 GGTGAGGTGTTACGGCTAGCTAAACGGGATGTCCATGACAATAGCCTTCTTTGCCCAATCTTTAG
1 GGTGAGGTGTTACGGCTAGCTAAACGGGATGTCCATGACAATAGCCTTCTTTGCCCAATCTTTAG
73409166 CCTCTTTTTACACTTATCGATTCACTAGTTCTGAT-TCACC
66 CCTCTTTTTACACTTATCGATTCACTAGTTCTGATCTCACC
73409206 GGTGAGGTGTTACGGCTAGCTAAACGGGATGTCCATGACAATAGCCTTCTTTGCCCAATCTTTAG
1 GGTGAGGTGTTACGGCTAGCTAAACGGGATGTCCATGACAATAGCCTTCTTTGCCCAATCTTTAG
73409271 CCTCTTTTTACACTTATCGATTCACTAGTTCTGATCTCACC
66 CCTCTTTTTACACTTATCGATTCACTAGTTCTGATCTCACC
73409312 ACTTCCATAC
Statistics
Matches: 105, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
105 100 0.95
106 5 0.05
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (106 bp):
GGTGAGGTGTTACGGCTAGCTAAACGGGATGTCCATGACAATAGCCTTCTTTGCCCAATCTTTAG
CCTCTTTTTACACTTATCGATTCACTAGTTCTGATCTCACC
Found at i:73410573 original size:32 final size:32
Alignment explanation
Indices: 73410532--73410596 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
73410522 TAACTATGAG
73410532 TACGGGAAGGATTGTTTCCATGTAACAGAACT
1 TACGGGAAGGATTGTTTCCATGTAACAGAACT
73410564 TACGGGAAGGATTGTTTCCATGTAACAGAACT
1 TACGGGAAGGATTGTTTCCATGTAACAGAACT
73410596 T
1 T
73410597 CAAATTCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (32 bp):
TACGGGAAGGATTGTTTCCATGTAACAGAACT
Found at i:73411219 original size:30 final size:30
Alignment explanation
Indices: 73411183--73411297 Score: 176
Period size: 30 Copynumber: 3.8 Consensus size: 30
73411173 ACTTTTCTCA
* *
73411183 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
73411213 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* * *
73411243 ACTAGCCACTCTTTTTCCATCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
73411273 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
73411298 TTTGTACCTA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 76 1.00
ACGTcount: A:0.25, C:0.48, G:0.03, T:0.23
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:73411248 original size:60 final size:60
Alignment explanation
Indices: 73411183--73411297 Score: 212
Period size: 60 Copynumber: 1.9 Consensus size: 60
73411173 ACTTTTCTCA
*
73411183 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
*
73411243 ACTAGCCACTCTTTTTCCATCACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
73411298 TTTGTACCTA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.25, C:0.48, G:0.03, T:0.23
Consensus pattern (60 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:73411837 original size:23 final size:23
Alignment explanation
Indices: 73411800--73411931 Score: 72
Period size: 25 Copynumber: 5.5 Consensus size: 23
73411790 CTTTTTTTGT
73411800 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
73411823 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
** *
73411845 TATTAGGTATATT-TTAAATTTTA
1 TATTATATATATTCTT-AATATTA
* * *
73411868 TATTACGTATATATATATTTTATACTA
1 TATTA--TATATAT-T-CTTAATATTA
* *
73411895 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
*
73411920 TATTATTTATAT
1 TATTATATATAT
73411932 ATATATTTTT
Statistics
Matches: 81, Mismatches: 19, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
21 2 0.02
22 15 0.19
23 19 0.23
24 4 0.05
25 30 0.37
26 1 0.01
27 8 0.10
28 2 0.02
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.58
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:73411905 original size:25 final size:25
Alignment explanation
Indices: 73411877--73412015 Score: 97
Period size: 25 Copynumber: 5.5 Consensus size: 25
73411867 ATATTACGTA
*
73411877 TATATATATTTTATACTATTTTATG
1 TATATATATTTTATACTATATTATG
* * * *
73411902 TATATATCTTTAATATTATATTATT
1 TATATATATTTTATACTATATTATG
* * *
73411927 TATATATATATTTTTAC-ATGTTATCT
1 TATATATAT-TTTATACTATATTAT-G
*
73411953 TATGTATATATCTTA-ACTATATTATG
1 TA--TATATATTTTATACTATATTATG
* *
73411979 TATGTAT-TTTTAACACTATATTATG
1 TATATATATTTT-ATACTATATTATG
*
73412004 TACATAT-TTTTA
1 TATATATATTTTA
73412016 ATATTATCAC
Statistics
Matches: 89, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
23 3 0.03
24 6 0.07
25 54 0.61
26 11 0.12
27 8 0.09
28 7 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATATATTTTATACTATATTATG
Found at i:73411927 original size:30 final size:28
Alignment explanation
Indices: 73411865--73411966 Score: 77
Period size: 27 Copynumber: 3.7 Consensus size: 28
73411855 ATTTTAAATT
* * * *
73411865 TTATATTACGTATATATATATT-TTATA
1 TTATTTTATGTATATATCTTTTATTATA
*
73411892 CTATTTTATGTATATATCTTTAATATTATA
1 TTATTTTATGTATATATCTTT--TATTATA
* * *
73411922 TTA-TTTATATATATAT-TTTTA-CATG
1 TTATTTTATGTATATATCTTTTATTATA
*
73411947 TTATCTTATGTATATATCTT
1 TTATTTTATGTATATATCTT
73411967 AACTATATTA
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
25 5 0.08
26 13 0.22
27 18 0.31
28 3 0.05
29 13 0.22
30 7 0.12
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (28 bp):
TTATTTTATGTATATATCTTTTATTATA
Found at i:73412021 original size:20 final size:20
Alignment explanation
Indices: 73411996--73412051 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
73411986 TTTTAACACT
73411996 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* * *
73412016 ATATTAT-CACGTATTTTTT
1 ATATTATGTACATATTTTTA
*
73412035 TTATATATGTACATATT
1 ATAT-TATGTACATATT
73412052 GATGTAGTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:73412191 original size:16 final size:14
Alignment explanation
Indices: 73412172--73412205 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 14
73412162 TATTATTCTA
73412172 ATATTTTGATATTTT
1 ATATTTT-ATATTTT
73412187 GATATTTTATATTTT
1 -ATATTTTATATTTT
73412202 ATAT
1 ATAT
73412206 ATTTTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 7 0.39
16 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (14 bp):
ATATTTTATATTTT
Found at i:73412200 original size:7 final size:8
Alignment explanation
Indices: 73412172--73412205 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
73412162 TATTATTCTA
73412172 ATATTTTG
1 ATATTTTG
73412180 ATATTTTG
1 ATATTTTG
73412188 ATATTTT-
1 ATATTTTG
73412195 ATATTTT-
1 ATATTTTG
73412202 ATAT
1 ATAT
73412206 ATTTTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (8 bp):
ATATTTTG
Found at i:73412207 original size:16 final size:15
Alignment explanation
Indices: 73412172--73412212 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
73412162 TATTATTCTA
73412172 ATATTTTGATATTTTG
1 ATATTTT-ATATTTTG
*
73412188 ATATTTTATATTTTAT
1 ATATTTTATATTTT-G
73412204 ATATTTTAT
1 ATATTTTAT
73412213 TATTCACATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.30
16 16 0.70
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (15 bp):
ATATTTTATATTTTG
Found at i:73442075 original size:29 final size:30
Alignment explanation
Indices: 73442016--73442073 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
73442006 TCCGAGCCTT
*
73442016 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
73442046 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
73442074 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:73442303 original size:13 final size:13
Alignment explanation
Indices: 73442285--73442316 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
73442275 TTTCCAGCAA
73442285 TTATGAATTTATT
1 TTATGAATTTATT
73442298 TTATGAATTTATT
1 TTATGAATTTATT
*
73442311 TGATGA
1 TTATGA
73442317 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:73442506 original size:55 final size:51
Alignment explanation
Indices: 73442411--73442608 Score: 231
Period size: 50 Copynumber: 3.8 Consensus size: 51
73442401 ATTTGGGTAA
73442411 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC----GATCATG
* * *
73442467 AGAGGTCCC-TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA-GATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATCATG
* * * * *
73442516 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATCATG
* *
73442566 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
73442609 TGTTATTATC
Statistics
Matches: 125, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
49 13 0.10
50 37 0.30
51 34 0.27
54 2 0.02
55 31 0.25
56 8 0.06
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (51 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATCATG
Found at i:73442607 original size:101 final size:101
Alignment explanation
Indices: 73442423--73442608 Score: 259
Period size: 101 Copynumber: 1.8 Consensus size: 101
73442413 AGATCCCATG
* * **
73442423 TAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCCTGTAAGACCATG
1 TAAGACCATGTCTGGGACATGGCATGGGCATCC---A-ATCACGAGACATCCCTGTAAGACCATG
73442488 TCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCTA
62 TCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCTA
73442528 TAAGACCATGTCTGGGACATGGCATGGGCA-CC-ATCACGAGAACATCCCATGTAAGACCATGTC
1 TAAGACCATGTCTGGGACATGGCATGGGCATCCAATCACGAG-ACATCCC-TGTAAGACCATGTC
*
73442591 TGGGACATGGCTTTGGCA
64 TGGGACATGGCGTTGGCA
73442609 TGTTATTATC
Statistics
Matches: 74, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
99 7 0.09
100 5 0.07
101 31 0.42
104 2 0.03
105 29 0.39
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (101 bp):
TAAGACCATGTCTGGGACATGGCATGGGCATCCAATCACGAGACATCCCTGTAAGACCATGTCTG
GGACATGGCGTTGGCACCGAGATGAGAGGTCCCCTA
Found at i:73449587 original size:29 final size:30
Alignment explanation
Indices: 73449528--73449585 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
73449518 TCCGAGCCTT
*
73449528 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
73449558 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
73449586 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:73449815 original size:13 final size:13
Alignment explanation
Indices: 73449797--73449828 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
73449787 TTTCCAGCAA
73449797 TTATGAATTTATT
1 TTATGAATTTATT
73449810 TTATGAATTTATT
1 TTATGAATTTATT
*
73449823 TGATGA
1 TTATGA
73449829 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:73450051 original size:50 final size:51
Alignment explanation
Indices: 73449923--73450121 Score: 231
Period size: 50 Copynumber: 3.8 Consensus size: 51
73449913 ATTTGGGTAA
* *
73449923 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATTGGCA-CC----GATCATG
* *
73449979 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA-GATG
1 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATTGGCACCGATCATG
* * *
73450029 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATTGGCACCGATCATG
** * *
73450079 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCCTGTAAGACCATGTCTGGGACATGGCATTGGCA
73450122 TGTTATTATC
Statistics
Matches: 126, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
49 1 0.01
50 48 0.38
51 36 0.29
55 2 0.02
56 39 0.31
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (51 bp):
AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATTGGCACCGATCATG
Found at i:73450120 original size:101 final size:102
Alignment explanation
Indices: 73449935--73450121 Score: 261
Period size: 101 Copynumber: 1.8 Consensus size: 102
73449925 AGATCCCATG
* * ** *
73449935 TAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCCCTGTAAGACCAT
1 TAAGACCATGTCTGGGACATGGCATGGGCATCC---A-ATCACGAGACATCCCATGTAAGACCAT
73450000 GTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCTA
62 GTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCTA
73450041 TAAGACCATGTCTGGGACATGGCATGGGCA-CC-ATCACGAGAACATCCCATGTAAGACCATGTC
1 TAAGACCATGTCTGGGACATGGCATGGGCATCCAATCACGAG-ACATCCCATGTAAGACCATGTC
*
73450104 TGGGACATGGCTTTGGCA
65 TGGGACATGGCGTTGGCA
73450122 TGTTATTATC
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
100 7 0.09
101 36 0.49
105 2 0.03
106 29 0.39
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (102 bp):
TAAGACCATGTCTGGGACATGGCATGGGCATCCAATCACGAGACATCCCATGTAAGACCATGTCT
GGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCTA
Found at i:73457660 original size:25 final size:25
Alignment explanation
Indices: 73457626--73457677 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
73457616 TGTTGTGTGA
73457626 AAGACATGTTAATTAGTTTAATATT
1 AAGACATGTTAATTAGTTTAATATT
73457651 AAGACATGTTAATTAGTTTAATATT
1 AAGACATGTTAATTAGTTTAATATT
73457676 AA
1 AA
73457678 TTTTCTTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.42, C:0.04, G:0.12, T:0.42
Consensus pattern (25 bp):
AAGACATGTTAATTAGTTTAATATT
Found at i:73466979 original size:99 final size:101
Alignment explanation
Indices: 73466857--73467053 Score: 285
Period size: 99 Copynumber: 2.0 Consensus size: 101
73466847 TACTTATGAA
* *
73466857 TTATGAATAGTTATTTACCTTTTTTAAGAT-ATATTTTATGATTAATTATTTACTTTT-TTGATA
1 TTATGAATAATTATTTACCTTTTTTAAG-TCATATTTTATGATTAATTAATTACTTTTATTGATA
*
73466920 CTCTTTAATT-TCGATCAAAAT-ATTTTTTATTTTATT
65 CTCCTTAATTAT-GATCAAAATAATTTTTTATTTTATT
* * *
73466956 TTATGACTAATTATTTACCTTTTTTGAGTCATATTTTATGATTAATTAATTATTTTTATTGATAC
1 TTATGAATAATTATTTACCTTTTTTAAGTCATATTTTATGATTAATTAATTACTTTTATTGATAC
73467021 TCCTTAATTATGATCAAAATAAATTTTTTATTT
66 TCCTTAATTATGATCAAAAT-AATTTTTTATTT
73467054 GTCGTTAAAA
Statistics
Matches: 87, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
98 1 0.01
99 50 0.57
100 24 0.28
101 1 0.01
102 11 0.13
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (101 bp):
TTATGAATAATTATTTACCTTTTTTAAGTCATATTTTATGATTAATTAATTACTTTTATTGATAC
TCCTTAATTATGATCAAAATAATTTTTTATTTTATT
Found at i:73478652 original size:21 final size:22
Alignment explanation
Indices: 73478623--73478669 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
73478613 CAGAAGGAGT
*
73478623 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
73478645 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
73478666 GAGT
1 GAGT
73478670 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:73482556 original size:31 final size:31
Alignment explanation
Indices: 73482496--73482556 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
73482486 TATTATTTTT
** *
73482496 AGTTAAATTTAATTTTTAATATTTTAAAAAG
1 AGTTAAATTTAATCATTAATATTTCAAAAAG
73482527 AGTTAAATTTAATCATTAAT-TATTCAAAAA
1 AGTTAAATTTAATCATTAATAT-TTCAAAAA
73482557 ATTGAATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 1 0.04
31 25 0.96
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (31 bp):
AGTTAAATTTAATCATTAATATTTCAAAAAG
Found at i:73482698 original size:23 final size:22
Alignment explanation
Indices: 73482671--73482723 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
73482661 ATTTATAAAC
73482671 TTTTTAAATTTTTTCAAAT-TT
1 TTTTTAAATTTTTTCAAATATT
* *
73482692 TTATTT-TAGTTTTTCAAATATT
1 TT-TTTAAATTTTTTCAAATATT
*
73482714 TTTATAAATT
1 TTTTTAAATT
73482724 GTAAAACATT
Statistics
Matches: 24, Mismatches: 5, Indels: 5
0.71 0.15 0.15
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTTTAAATTTTTTCAAATATT
Found at i:73488230 original size:10 final size:10
Alignment explanation
Indices: 73488196--73488230 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 10
73488186 ATTTTCTTAT
73488196 AAAAATATTTA
1 AAAAATA-TTA
73488207 AAAAATATTA
1 AAAAATATTA
73488217 AAAAATCATTA
1 AAAAAT-ATTA
73488228 AAA
1 AAA
73488231 GTAATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAAATATTA
Found at i:73492412 original size:13 final size:14
Alignment explanation
Indices: 73492395--73492432 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
73492385 TTATTCTTAA
73492395 AAAATATTTAA-AT
1 AAAATATTTAATAT
*
73492408 TAAATATTTAATAT
1 AAAATATTTAATAT
73492422 AAAAT-TTTAAT
1 AAAATATTTAAT
73492433 TGATATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AAAATATTTAATAT
Found at i:73495293 original size:22 final size:21
Alignment explanation
Indices: 73495265--73495308 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
73495255 TTCTACTTTT
73495265 ATTTGGGAATTAAAATTTTAAA
1 ATTTGGG-ATTAAAATTTTAAA
* *
73495287 ATTTGGGTTTCAAATTTTAAA
1 ATTTGGGATTAAAATTTTAAA
73495308 A
1 A
73495309 CAGTATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.43
Consensus pattern (21 bp):
ATTTGGGATTAAAATTTTAAA
Found at i:73496621 original size:46 final size:46
Alignment explanation
Indices: 73496556--73496799 Score: 238
Period size: 46 Copynumber: 5.0 Consensus size: 46
73496546 CTATCTTTAA
* * * ** * *
73496556 CATGATGCCATAGTGTCTTTCAATTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATAT
* *
73496602 CATGTTGCCATGGTATCTTTCAATCATGGTCTTGTTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
73496648 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
* * *
73496694 CACGTTGCCATGATATCTTTCAACCATGGTCTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGG--T----C-T--TATT---CATTTCATAT
* *
73496752 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
73496798 CA
1 CA
73496800 AAGAGCACAC
Statistics
Matches: 169, Mismatches: 16, Indels: 26
0.80 0.08 0.12
Matches are distributed among these distances:
45 4 0.02
46 117 0.69
48 1 0.01
49 2 0.01
51 1 0.01
52 2 0.01
53 1 0.01
55 3 0.02
56 1 0.01
58 37 0.22
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
Found at i:73496722 original size:92 final size:96
Alignment explanation
Indices: 73496556--73496799 Score: 264
Period size: 92 Copynumber: 2.5 Consensus size: 96
73496546 CTATCTTTAA
* * * ** * * * *
73496556 CATGATGCCATAGTGTCTTTCAATTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATATCACGTTGCCATGATATCT
*
73496620 TTCAATCATGGTCT-T-G-TT-CATTTCATAT
65 TTCAACCATGGTCTATGGCTTACATTTCATAT
73496648 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGATATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGATATCTT
73496713 TCAACCATGGTCTCAACCATGGTCTTACACATTTCATAT
66 TCAACCATGGTCT-----ATGG-CTT--ACATTTCATAT
* *
73496752 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
73496800 AAGAGCACAC
Statistics
Matches: 127, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
91 4 0.03
92 63 0.50
98 1 0.01
99 1 0.01
101 2 0.02
104 56 0.44
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.41
Consensus pattern (96 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGATATCTT
TCAACCATGGTCTATGGCTTACATTTCATAT
Found at i:73496730 original size:12 final size:12
Alignment explanation
Indices: 73496713--73496737 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73496703 ATGATATCTT
73496713 TCAACCATGGTC
1 TCAACCATGGTC
73496725 TCAACCATGGTC
1 TCAACCATGGTC
73496737 T
1 T
73496738 TACACATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (12 bp):
TCAACCATGGTC
Found at i:73496739 original size:58 final size:58
Alignment explanation
Indices: 73496667--73496783 Score: 198
Period size: 58 Copynumber: 2.0 Consensus size: 58
73496657 ATGGTATCTT
**
73496667 TCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGATATCTTTCAACCATGGTC
1 TCAACCATGGTCTTACACATTTCATATCACGTTGCCATGATATCTTTCAACCATGGTC
* *
73496725 TCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
1 TCAACCATGGTCTTACACATTTCATATCACGTTGCCATGATATCTTTCAACCATGGTC
73496783 T
1 T
73496784 TATACATTTC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.37
Consensus pattern (58 bp):
TCAACCATGGTCTTACACATTTCATATCACGTTGCCATGATATCTTTCAACCATGGTC
Found at i:73500264 original size:3 final size:3
Alignment explanation
Indices: 73500256--73500286 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
73500246 GGCATAGTTA
73500256 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
73500287 CTTTTGTTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:73503836 original size:13 final size:13
Alignment explanation
Indices: 73503815--73503875 Score: 61
Period size: 13 Copynumber: 4.7 Consensus size: 13
73503805 TCTTCATTGT
*
73503815 TTTTAAAAAGTGC
1 TTTTGAAAAGTGC
73503828 TTTTGAAAAGTG-
1 TTTTGAAAAGTGC
* *
73503840 TTGTGGAAAAGTGT
1 TT-TTGAAAAGTGC
*
73503854 TTTTGAGAAGTGC
1 TTTTGAAAAGTGC
*
73503867 TTTGGAAAA
1 TTTTGAAAA
73503876 ATTTAAGTGT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
12 2 0.05
13 35 0.90
14 2 0.05
ACGTcount: A:0.33, C:0.03, G:0.26, T:0.38
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:73503872 original size:26 final size:26
Alignment explanation
Indices: 73503820--73503875 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
73503810 ATTGTTTTTA
73503820 AAAAGTGCTTTTGAAAAGTGTTGTGG
1 AAAAGTGCTTTTGAAAAGTGTTGTGG
* *
73503846 AAAAGTGTTTTTGAGAAGTGCTT-TGG
1 AAAAGTGCTTTTGAAAAGTG-TTGTGG
73503872 AAAA
1 AAAA
73503876 ATTTAAGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.34, C:0.04, G:0.29, T:0.34
Consensus pattern (26 bp):
AAAAGTGCTTTTGAAAAGTGTTGTGG
Done.