Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 239 of 250
Found at i:73885918 original size:20 final size:22
Alignment explanation
Indices: 73885889--73885932 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
73885879 TGACTTTAAT
*
73885889 ATAATTATATTTAAAAACAATTA
1 ATAA-TATATTAAAAAACAATTA
73885912 ATAATATCATTAAAAAACAAT
1 ATAATAT-ATTAAAAAACAAT
73885933 ATTTATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (22 bp):
ATAATATATTAAAAAACAATTA
Found at i:73887395 original size:24 final size:27
Alignment explanation
Indices: 73887357--73887409 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
73887347 GCTATGTAAA
*
73887357 AAAATTTAAT-AA-ATAAAAATTATAT
1 AAAATTTAATAAATATAAAAATAATAT
*
73887382 AAAA-TTACTAAATATAAAAATAATAT
1 AAAATTTAATAAATATAAAAATAATAT
73887408 AA
1 AA
73887410 TATAAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 4 0.17
25 6 0.25
26 14 0.58
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (27 bp):
AAAATTTAATAAATATAAAAATAATAT
Found at i:73887401 original size:16 final size:16
Alignment explanation
Indices: 73887378--73887415 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
73887368 AATAAAAATT
* *
73887378 ATATAAAATTACTA-A
1 ATATAAAAATAATATA
73887393 ATATAAAAATAATATA
1 ATATAAAAATAATATA
73887409 ATATAAA
1 ATATAAA
73887416 TATTTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
ATATAAAAATAATATA
Found at i:73892520 original size:27 final size:27
Alignment explanation
Indices: 73892490--73892544 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
73892480 TACACTTTAA
*
73892490 TTCCTTCAATTAAAAAAATTATAAATT
1 TTCCTCCAATTAAAAAAATTATAAATT
*
73892517 TTCCTCCAATTCAAAAAATTATAAATT
1 TTCCTCCAATTAAAAAAATTATAAATT
73892544 T
1 T
73892545 CTAACAAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (27 bp):
TTCCTCCAATTAAAAAAATTATAAATT
Found at i:73892612 original size:31 final size:31
Alignment explanation
Indices: 73892576--73892653 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
73892566 GATGAGTAAA
*
73892576 TTTATAATTT-AGTCATTTAATTATTAATAAT
1 TTTATAATTTGA-TCACTTAATTATTAATAAT
*
73892607 TTTATAATTTGATCACTTAATTATTAATAAA
1 TTTATAATTTGATCACTTAATTATTAATAAT
* *
73892638 ATTGTAATTTGATCAC
1 TTTATAATTTGATCAC
73892654 GCTTAGCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
31 41 0.98
32 1 0.02
ACGTcount: A:0.38, C:0.06, G:0.05, T:0.50
Consensus pattern (31 bp):
TTTATAATTTGATCACTTAATTATTAATAAT
Found at i:73895420 original size:14 final size:14
Alignment explanation
Indices: 73895401--73895432 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
73895391 AGGTCATTTA
*
73895401 GCCCAACCAAATTG
1 GCCCAACCAAACTG
73895415 GCCCAACCAAACTG
1 GCCCAACCAAACTG
73895429 GCCC
1 GCCC
73895433 GGTGATTGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.44, G:0.16, T:0.09
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:73900538 original size:14 final size:14
Alignment explanation
Indices: 73900519--73900550 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
73900509 AGGTCATTTA
73900519 GCCCAACCAAACTG
1 GCCCAACCAAACTG
73900533 GCCCAACCAAACTG
1 GCCCAACCAAACTG
73900547 GCCC
1 GCCC
73900551 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:73901120 original size:5 final size:6
Alignment explanation
Indices: 73901107--73901153 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
73901097 ATAATTTAAT
*
73901107 AAATAA AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
73901154 ACATATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:73901155 original size:20 final size:19
Alignment explanation
Indices: 73901107--73901153 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
73901097 ATAATTTAAT
73901107 AAATAAAAA-TAAAAATAA
1 AAATAAAAACTAAAAATAA
*
73901125 AAATCTAAAACTAAAAATAA
1 AAAT-AAAAACTAAAAATAA
73901145 AAATAAAAA
1 AAATAAAAA
73901154 ACATATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.16
19 8 0.32
20 13 0.52
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (19 bp):
AAATAAAAACTAAAAATAA
Found at i:73901187 original size:9 final size:9
Alignment explanation
Indices: 73901173--73901231 Score: 64
Period size: 9 Copynumber: 6.6 Consensus size: 9
73901163 TTTATAAAAA
73901173 TAATTCGGT
1 TAATTCGGT
*
73901182 TAATTCGGG
1 TAATTCGGT
**
73901191 TAATTTTGT
1 TAATTCGGT
**
73901200 TAATTCTAT
1 TAATTCGGT
*
73901209 TAATTCGAT
1 TAATTCGGT
73901218 TAATTCGGT
1 TAATTCGGT
73901227 TAATT
1 TAATT
73901232 TTATACTTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.27, C:0.08, G:0.15, T:0.49
Consensus pattern (9 bp):
TAATTCGGT
Found at i:73904781 original size:23 final size:22
Alignment explanation
Indices: 73904731--73904782 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
73904721 TTTTTTAATA
73904731 ATAAT-AATTTTATATTATATC
1 ATAATAAATTTTATATTATATC
** *
73904752 AGCATAAATTTTATTATTTTATC
1 ATAATAAATTTTA-TATTATATC
73904775 ATAATAAA
1 ATAATAAA
73904783 AACTAAATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 3 0.12
22 7 0.29
23 14 0.58
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (22 bp):
ATAATAAATTTTATATTATATC
Found at i:73904844 original size:21 final size:19
Alignment explanation
Indices: 73904805--73904844 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
73904795 ATTAAAATTT
*
73904805 TAAAATTATTAATATAATA
1 TAAAATTATTAAAATAATA
73904824 TAAAATTATTCAAAAATAATA
1 TAAAATTATT--AAAATAATA
73904845 ATATCTCTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
TAAAATTATTAAAATAATA
Found at i:73911903 original size:19 final size:19
Alignment explanation
Indices: 73911868--73911923 Score: 71
Period size: 18 Copynumber: 3.0 Consensus size: 19
73911858 TTTAAAAATA
*
73911868 TATAAAT-TTTAGAATTTT
1 TATAAATATTTTGAATTTT
73911886 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAATTTT
*
73911904 TAAAAATTATTTTGAATTTT
1 TATAAA-TATTTTGAATTTT
73911924 CTAAGTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 15 0.45
19 15 0.45
20 3 0.09
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:73911939 original size:20 final size:19
Alignment explanation
Indices: 73911873--73911923 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
73911863 AAATATATAA
*
73911873 ATTTTAGAATTTTTATAAA-T
1 ATTTT-GAA-TTTTAAAAATT
73911893 ATTTTGAATTTTAAAAATT
1 ATTTTGAATTTTAAAAATT
73911912 ATTTTGAATTTT
1 ATTTTGAATTTT
73911924 CTAAGTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 8 0.28
19 16 0.55
20 5 0.17
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (19 bp):
ATTTTGAATTTTAAAAATT
Found at i:73915804 original size:48 final size:48
Alignment explanation
Indices: 73915725--73915818 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
73915715 AGGGAATTCT
* * *
73915725 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCATTTTTACG
73915773 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCATTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCATTTTTA
73915819 AGCCAAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 2 0.05
48 39 0.95
ACGTcount: A:0.20, C:0.13, G:0.27, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCATTTTTACG
Found at i:73920867 original size:6 final size:6
Alignment explanation
Indices: 73920858--73920883 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
73920848 AAAGAAAAAA
73920858 GGGTAT GGGTAT GGGTAT GGGTAT GG
1 GGGTAT GGGTAT GGGTAT GGGTAT GG
73920884 AGGAAACTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.54, T:0.31
Consensus pattern (6 bp):
GGGTAT
Found at i:73928476 original size:2 final size:2
Alignment explanation
Indices: 73928471--73928507 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
73928461 ATATATACAC
73928471 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
73928508 TGTACCTTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:73934737 original size:18 final size:18
Alignment explanation
Indices: 73934714--73934788 Score: 114
Period size: 18 Copynumber: 4.2 Consensus size: 18
73934704 TACGACCGTT
*
73934714 TACGGTACTATTTACGTA
1 TACGGTACTATTCACGTA
73934732 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
73934750 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
73934768 TACGATACTGTTCACGTA
1 TACGGTACTATTCACGTA
73934786 TAC
1 TAC
73934789 AGTAGTTGGG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:73945818 original size:31 final size:32
Alignment explanation
Indices: 73945760--73945821 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
73945750 TTACTTCGAC
* *
73945760 TATTTGTTAAAAAGTTAATGGATAAATTTAAT
1 TATTTGTTAAAAAATTAATGGAGAAATTTAAT
73945792 TATTT-TTAAAAAATTAAT-GACGAAATTTAA
1 TATTTGTTAAAAAATTAATGGA-GAAATTTAA
73945822 CTCGAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 2 0.07
31 20 0.74
32 5 0.19
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.42
Consensus pattern (32 bp):
TATTTGTTAAAAAATTAATGGAGAAATTTAAT
Found at i:73946481 original size:42 final size:45
Alignment explanation
Indices: 73946434--73946526 Score: 108
Period size: 42 Copynumber: 2.2 Consensus size: 45
73946424 TTTATCATTA
* * *
73946434 TAAATAAAATAATTATTAATT-AAAAA-TATAAATTAAA-AATTT
1 TAAATAAAATAATTATTAATTAAAAAATTAGAAATAAAATAATAT
*
73946476 TAAAT---ATATTTATTAATTAAAAAATTAGAAATAAAATAATAT
1 TAAATAAAATAATTATTAATTAAAAAATTAGAAATAAAATAATAT
73946518 TAAATAAAA
1 TAAATAAAA
73946527 AATACAAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
39 12 0.29
40 5 0.12
41 9 0.22
42 14 0.34
45 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (45 bp):
TAAATAAAATAATTATTAATTAAAAAATTAGAAATAAAATAATAT
Found at i:73959763 original size:14 final size:16
Alignment explanation
Indices: 73959746--73959786 Score: 50
Period size: 14 Copynumber: 2.6 Consensus size: 16
73959736 ATTTTATTTT
73959746 ATATAAAATA-T-AAA
1 ATATAAAATATTAAAA
*
73959760 ATATAATATATTAAAA
1 ATATAAAATATTAAAA
73959776 ATATTAAAATA
1 ATA-TAAAATA
73959787 AATATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 9 0.41
15 1 0.05
16 6 0.27
17 6 0.27
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATAAAATATTAAAA
Found at i:73960657 original size:17 final size:16
Alignment explanation
Indices: 73960630--73960662 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
73960620 TATAATTACC
73960630 ATATAATTTAAATATT
1 ATATAATTTAAATATT
73960646 ATATATATTTAAATATT
1 ATATA-ATTTAAATATT
73960663 TTTACATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATAATTTAAATATT
Found at i:73964229 original size:17 final size:17
Alignment explanation
Indices: 73964209--73964241 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
73964199 TCATACTCAT
*
73964209 ATTTGACACTTAACTCG
1 ATTTGAAACTTAACTCG
73964226 ATTTGAAACTTAACTC
1 ATTTGAAACTTAACTC
73964242 AAAACCGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.36
Consensus pattern (17 bp):
ATTTGAAACTTAACTCG
Found at i:73964613 original size:16 final size:17
Alignment explanation
Indices: 73964578--73964616 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
73964568 AGAAATAAAG
73964578 AAAATAAGTAATTTATA
1 AAAATAAGTAATTTATA
73964595 AAAATAATGT-ATTTA-A
1 AAAATAA-GTAATTTATA
73964611 AAAATA
1 AAAATA
73964617 TTTAGAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 12 0.57
18 2 0.10
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (17 bp):
AAAATAAGTAATTTATA
Found at i:73965632 original size:48 final size:47
Alignment explanation
Indices: 73965568--73965679 Score: 136
Period size: 48 Copynumber: 2.3 Consensus size: 47
73965558 AGTGATAATT
* *
73965568 TTAAATTTTCAATACTATTCGATATTTTTTTAATTTATACAAATT-TAA
1 TTAAA-TTTCAATACTATTCGATATTTTATTAATTAATAC-AATTATAA
* * *
73965616 TTAAATTTGCAATACTATTTGATATTTTATTCATTAATGCAATTATAA
1 TTAAATTT-CAATACTATTCGATATTTTATTAATTAATACAATTATAA
73965664 TTAAAATTTCAATACT
1 TT-AAATTTCAATACT
73965680 GCTTGATTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
47 7 0.12
48 43 0.77
49 6 0.11
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.49
Consensus pattern (47 bp):
TTAAATTTCAATACTATTCGATATTTTATTAATTAATACAATTATAA
Found at i:73965686 original size:48 final size:46
Alignment explanation
Indices: 73965568--73965696 Score: 129
Period size: 48 Copynumber: 2.7 Consensus size: 46
73965558 AGTGATAATT
* * *
73965568 TTAAATTTTCAATACTATTCGATATTTTTTTAATTTATACAAATTTAA
1 TTAAAATTTCAATACTATT-GATA-TTTTTTCATTAATACAAATTTAA
*
73965616 TT-AAATTTGCAATACTATTTGATATTTTATTCATTAATGC-AATTATAA
1 TTAAAATTT-CAATACTA-TTGATATTTT-TTCATTAATACAAATT-TAA
*
73965664 TTAAAATTTCAATACTGCTTGAT-TTTTTTCATT
1 TTAAAATTTCAATACT-ATTGATATTTTTTCATT
73965697 TATGATGTTT
Statistics
Matches: 70, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
46 6 0.09
47 17 0.24
48 39 0.56
49 8 0.11
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (46 bp):
TTAAAATTTCAATACTATTGATATTTTTTCATTAATACAAATTTAA
Found at i:73966678 original size:7 final size:7
Alignment explanation
Indices: 73966666--73966698 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
73966656 TAGTCTTTTC
73966666 GTATTTA
1 GTATTTA
73966673 GTATTTA
1 GTATTTA
73966680 GTATTTA
1 GTATTTA
73966687 GTATTTA
1 GTATTTA
73966694 GTATT
1 GTATT
73966699 ATGTATTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:73967312 original size:18 final size:18
Alignment explanation
Indices: 73967289--73967327 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
73967279 ATGCTAGGTG
*
73967289 TGTATCCTATCCCTTATA
1 TGTATCCTAACCCTTATA
73967307 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
73967325 TGT
1 TGT
73967328 TTCTTTTTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.26, G:0.08, T:0.44
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:73971342 original size:126 final size:126
Alignment explanation
Indices: 73971167--73971421 Score: 359
Period size: 126 Copynumber: 2.0 Consensus size: 126
73971157 TTATAGCCTC
* * * * *
73971167 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCAACGTGGGAGTTTTTTTCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGCCAACGTGGGAGCTTTTTTCAAAAATTTTACAG
* * * * * *
73971232 ACAGTGCATTC-TGTTTGAAGCGTTTTCAACACTATTTGTTCATAATCGTCTACTCAGAATT
66 ACAGTACA-TCATGCTTGAAGCGTTTTCAACACTATTTGTTCAAAAACGTCAACTCAAAATT
* *
73971293 ATTTTTCTATGAACTACTGTAGCAAAAGAGCGCCCACGTGGGAGCTTTTTTCAAAAATTTTACAG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGCCAACGTGGGAGCTTTTTTCAAAAATTTTACAG
* *
73971358 ACAGTACATCATGCTTGAAGCGTTTTCGACACTATTTGTTTAAAAACGTCAACTCAAAATT
66 ACAGTACATCATGCTTGAAGCGTTTTCAACACTATTTGTTCAAAAACGTCAACTCAAAATT
73971419 ATT
1 ATT
73971422 CTTGCAGAAA
Statistics
Matches: 113, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
125 2 0.02
126 111 0.98
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGCCAACGTGGGAGCTTTTTTCAAAAATTTTACAG
ACAGTACATCATGCTTGAAGCGTTTTCAACACTATTTGTTCAAAAACGTCAACTCAAAATT
Found at i:73971525 original size:20 final size:21
Alignment explanation
Indices: 73971493--73971531 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
73971483 CTAATACCCT
73971493 AAACATAAATTT-ATTTAAAA
1 AAACATAAATTTAATTTAAAA
73971513 AAAC-TAAACTTTAATTTAA
1 AAACATAAA-TTTAATTTAA
73971532 TTAATTAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 7 0.41
21 6 0.35
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (21 bp):
AAACATAAATTTAATTTAAAA
Found at i:73983594 original size:30 final size:30
Alignment explanation
Indices: 73983553--73983615 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
73983543 GTTACGTTTA
73983553 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
* * *
73983583 TTGTTATTTTTGTTATTATTTTAGAGGTAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
73983613 TTG
1 TTG
73983616 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.22, C:0.02, G:0.16, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:73983769 original size:12 final size:12
Alignment explanation
Indices: 73983739--73983770 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
73983729 TATATATTTT
73983739 AAAATT-ATATA
1 AAAATTAATATA
73983750 AAAA-TAATATA
1 AAAATTAATATA
73983761 AAAATTAATA
1 AAAATTAATA
73983771 CAGACAGGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 13 0.68
12 5 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:73984686 original size:15 final size:16
Alignment explanation
Indices: 73984666--73984703 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
73984656 TTTATTTGCA
*
73984666 AATA-ATTTTTCTAAG
1 AATATATTTTTATAAG
73984681 AATAATATTTTTATAAG
1 AAT-ATATTTTTATAAG
73984698 AATATA
1 AATATA
73984704 CAATAAGGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 3 0.15
16 4 0.20
17 13 0.65
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (16 bp):
AATATATTTTTATAAG
Found at i:73985838 original size:15 final size:15
Alignment explanation
Indices: 73985818--73985846 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73985808 GATATAAATA
73985818 AAATTTATTATTTTT
1 AAATTTATTATTTTT
73985833 AAATTTATTATTTT
1 AAATTTATTATTTT
73985847 GAATAGTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
AAATTTATTATTTTT
Found at i:73987481 original size:16 final size:16
Alignment explanation
Indices: 73987447--73987480 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
73987437 TTATCGTAAT
*
73987447 AATATAATTTATTTAA
1 AATATAATTTAATTAA
73987463 AATATATATTTAATTAA
1 AATATA-ATTTAATTAA
73987480 A
1 A
73987481 TTGATATCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AATATAATTTAATTAA
Found at i:73997836 original size:3 final size:3
Alignment explanation
Indices: 73997828--73997856 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
73997818 ATGAAAACAG
73997828 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
73997857 GGAGATTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:74006685 original size:11 final size:11
Alignment explanation
Indices: 74006655--74006686 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
74006645 TTTATGTTAT
74006655 AATTTGATGAA
1 AATTTGATGAA
74006666 AATTT-ATGAA
1 AATTTGATGAA
74006676 AATTTGATGAA
1 AATTTGATGAA
74006687 TGCACGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.38
Consensus pattern (11 bp):
AATTTGATGAA
Found at i:74006973 original size:38 final size:38
Alignment explanation
Indices: 74006930--74007006 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
74006920 TTCAGTTTCA
*
74006930 TATTTATGATCCATGGGTGGACATGTACATTTACATGC
1 TATTTATGATCCATAGGTGGACATGTACATTTACATGC
74006968 TATTTATGATCCATAGGTGGACATGTACATTTACATGC
1 TATTTATGATCCATAGGTGGACATGTACATTTACATGC
74007006 T
1 T
74007007 TGCGTCGGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (38 bp):
TATTTATGATCCATAGGTGGACATGTACATTTACATGC
Found at i:74014064 original size:24 final size:24
Alignment explanation
Indices: 74014032--74014077 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
74014022 CCCCGGACGT
74014032 ATAGAAATTATTTTAAAATGCTCG
1 ATAGAAATTATTTTAAAATGCTCG
74014056 ATAGAAATTATTTTAAAATGCT
1 ATAGAAATTATTTTAAAATGCT
74014078 GGCGACTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (24 bp):
ATAGAAATTATTTTAAAATGCTCG
Found at i:74018690 original size:47 final size:47
Alignment explanation
Indices: 74018581--74018691 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 47
74018571 CCGGGATAAG
* * *
74018581 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * *
74018628 CACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
74018675 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
74018692 ACTCAATGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 1 0.02
47 51 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:74019461 original size:15 final size:14
Alignment explanation
Indices: 74019437--74019469 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
74019427 TCAAATTTCC
74019437 CTTTTTTATTCTTT
1 CTTTTTTATTCTTT
74019451 CTTTATTTATTCTTT
1 CTTT-TTTATTCTTT
74019466 CTTT
1 CTTT
74019470 CACGTTTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (14 bp):
CTTTTTTATTCTTT
Found at i:74020093 original size:31 final size:31
Alignment explanation
Indices: 74020058--74020121 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
74020048 ATGTATAAAA
74020058 TTACACATTAGGTCAAAGTTCATGCATGATT
1 TTACACATTAGGTCAAAGTTCATGCATGATT
74020089 TTACACATTAGGTCAAAGTTCATGCATGATT
1 TTACACATTAGGTCAAAGTTCATGCATGATT
74020120 TT
1 TT
74020122 GAGATTTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.38
Consensus pattern (31 bp):
TTACACATTAGGTCAAAGTTCATGCATGATT
Found at i:74021813 original size:22 final size:22
Alignment explanation
Indices: 74021788--74021829 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
74021778 AATAATAGAC
74021788 ATTTATGTCAAGACTGAAATAT
1 ATTTATGTCAAGACTGAAATAT
* *
74021810 ATTTATGTCAGGATTGAAAT
1 ATTTATGTCAAGACTGAAAT
74021830 TTTAAAATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (22 bp):
ATTTATGTCAAGACTGAAATAT
Found at i:74032966 original size:23 final size:23
Alignment explanation
Indices: 74032933--74032978 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
74032923 AATTTGAAGA
*
74032933 AGAATTGAAACAAAACAACCCTT
1 AGAATTCAAACAAAACAACCCTT
74032956 AGAATTCAAACAAAACAACCCTT
1 AGAATTCAAACAAAACAACCCTT
74032979 TTTATATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.52, C:0.24, G:0.07, T:0.17
Consensus pattern (23 bp):
AGAATTCAAACAAAACAACCCTT
Found at i:74037310 original size:30 final size:31
Alignment explanation
Indices: 74037266--74037329 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
74037256 ATAATTTATA
*
74037266 TTTTTGTAAGTTTTAAAAGATAAAAT-TAAT
1 TTTTTATAAGTTTTAAAAGATAAAATGTAAT
* ** *
74037296 TTTTTATAATTTTTAAGGGTTAAAATGTAAT
1 TTTTTATAAGTTTTAAAAGATAAAATGTAAT
74037327 TTT
1 TTT
74037330 ATATTTATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 21 0.75
31 7 0.25
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.52
Consensus pattern (31 bp):
TTTTTATAAGTTTTAAAAGATAAAATGTAAT
Found at i:74037375 original size:15 final size:15
Alignment explanation
Indices: 74037325--74037377 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
74037315 TTAAAATGTA
* * *
74037325 ATTTTATATTTATTA
1 ATTTTAAATTTTTTT
**
74037340 ATTTTAAATTTTAAAT
1 ATTTTAAATTTT-TTT
74037356 ATTTTAAATTTTTTT
1 ATTTTAAATTTTTTT
74037371 ATTTTAA
1 ATTTTAA
74037378 GAGGTTGAGA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
15 18 0.60
16 12 0.40
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTTTAAATTTTTTT
Found at i:74038401 original size:14 final size:14
Alignment explanation
Indices: 74038382--74038415 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
74038372 TTTTATAAAG
74038382 AAATAAAAAATTTA
1 AAATAAAAAATTTA
74038396 AAATAAAAAATTTA
1 AAATAAAAAATTTA
74038410 AAATAA
1 AAATAA
74038416 TATAATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATAAAAAATTTA
Found at i:74047198 original size:22 final size:22
Alignment explanation
Indices: 74047184--74047229 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
74047174 TTTATTCTTC
74047184 TTTTTTTCCCTTTTTCATAACT
1 TTTTTTTCCCTTTTTCATAACT
74047206 TTTTTTTCCCTTTTTCATAACT
1 TTTTTTTCCCTTTTTCATAACT
74047228 TT
1 TT
74047230 AAGTGTTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.13, C:0.22, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTTTTTCCCTTTTTCATAACT
Found at i:74048164 original size:69 final size:69
Alignment explanation
Indices: 74048091--74048230 Score: 183
Period size: 69 Copynumber: 2.0 Consensus size: 69
74048081 GGGAGGGGGT
* * *
74048091 GAAGGGGATGGAGGAGGTGGGGACTTGTAATAGTAGGGTGGTGGTGGAGAGTGGA-CTGGTGGTG
1 GAAGGGGATGGAGGAGGTGGAGACTTGTAATAGTAGGGTGGTGGTGGAGA-TGGAGATGGAGGTG
74048155 GTGGA
65 GTGGA
* * * * * *
74048160 GAAGGTGATGGGGGAGGTGGAGATTTGTAGTAGTATGGTGGTGGTGGTGATGGAGATGGAGGTGG
1 GAAGGGGATGGAGGAGGTGGAGACTTGTAATAGTAGGGTGGTGGTGGAGATGGAGATGGAGGTGG
74048225 TGGA
66 TGGA
74048229 GA
1 GA
74048231 TTTGTAGTAG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
68 4 0.07
69 57 0.93
ACGTcount: A:0.21, C:0.01, G:0.54, T:0.24
Consensus pattern (69 bp):
GAAGGGGATGGAGGAGGTGGAGACTTGTAATAGTAGGGTGGTGGTGGAGATGGAGATGGAGGTGG
TGGA
Found at i:74048199 original size:48 final size:48
Alignment explanation
Indices: 74048147--74049076 Score: 594
Period size: 48 Copynumber: 19.2 Consensus size: 48
74048137 GAGAGTGGAC
* * *
74048147 TGGTGGTGGTGGAGAAGGTGATGGGGGAGGTGGAGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * *
74048195 TGGTGGTGGTGGTGATGGAGATGGAGGTGGTGGAGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * * * *
74048243 GGGAGGAGGAGGAGATGGTGATGGGGGAGGAGGAGATTTATAGTAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* *** * * *
74048291 TGGTGGTGGTGGCGATGGACTTGGAGGAGGTGGGGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * * *
74048339 TGGTGGCGGTGGTGATGGTGATGGTGGAGGAGGGGAGTTGTAGTGGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * *** * * * *
74048387 AGCTGGTGCTGGA-ACCTTCACTGGAGGTGGTGGTGATTTGTAATAGTA
1 TGGTGGTGGTGGAGATGGTGA-TGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * *
74048435 TGGTGGTGGAGGGGAAT--AGACTGGTGGTGGTGGGGACTTGTAATAGTA
1 TGGTGGTGGTGGAG-ATGGTGA-TGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * *
74048483 TGGTGGTGGAGGAGATGGAGAAGGAGGAGGTGGTGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * *
74048531 TGGTGGTGGAGGAGAAT-G-AATTGGTGGTGGTGGAGATTTGTAATAGTA
1 TGGTGGTGGTGGAG-ATGGTGA-TGGTGGTGGTGGAGATTTGTAGTAGTA
74048579 TGGTGGTGGTGGAGA--GTGGACTGGTGGTGGTGGAGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGT-GA-TGGTGGTGGTGGAGATTTGTAGTAGTA
* *
74048627 TGGTGGTGGTGGAGA--GTGGACTGGTGGTGGTGGGGACTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGT-GA-TGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * * * *
74048675 AGGTGGAGGTGGAGATGGCGACGGTGGAGGAGGGGATTTGTAATAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * *
74048723 TGGAGGTGGTGGTGATGGAGATGGAGATGGAGGTGGTGGGGATTTGTAGTAGTA
1 T---GGTGGT-G-G-TGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * * * * * * *
74048777 AGGAGGAGGAGGAGATGATGATGGTGGAGGAGGGGAGTTGTAATGGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * *
74048825 -GGT--TGGTGCAG-GGGCCTTCACTGGAGGTGGTGGTGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGG---TGA-TGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * *
74048873 TGGCGGTGGAGGAGATGGTGAAGGAGGTGGAGGTGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * * * *
74048921 TGGTGGAGGTGGTGAAGGAGAAGGTGGTGGTGGAGACTTGTAATAATA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * * * * *
74048969 TGGTGGAGGTGGTGAAGGAGAAGGTAGTGGTGGAGACTTGTAATAATA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* *
74049017 TGGTGGGGGTGGAGA--GTGGACTGGTGGAGGTGGAGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGT-GA-TGGTGGTGGTGGAGATTTGTAGTAGTA
*
74049065 TGGTGGAGGTGG
1 TGGTGGTGGTGG
74049077 TGGTGACTTG
Statistics
Matches: 701, Mismatches: 154, Indels: 54
0.77 0.17 0.06
Matches are distributed among these distances:
44 1 0.00
45 5 0.01
46 2 0.00
47 13 0.02
48 613 0.87
49 12 0.02
50 3 0.00
51 15 0.02
52 3 0.00
53 1 0.00
54 33 0.05
ACGTcount: A:0.21, C:0.03, G:0.49, T:0.27
Consensus pattern (48 bp):
TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
Found at i:74048603 original size:21 final size:21
Alignment explanation
Indices: 74048579--74048659 Score: 92
Period size: 21 Copynumber: 3.6 Consensus size: 21
74048569 TGTAATAGTA
74048579 TGGTGGTGGTGGAGAGTGGAC
1 TGGTGGTGGTGGAGAGTGGAC
74048600 TGGTGGTGGTGGAGATTTGTAGTAGTA-
1 TGGTGGTGGTGGAGA---GT-G--G-AC
74048627 TGGTGGTGGTGGAGAGTGGAC
1 TGGTGGTGGTGGAGAGTGGAC
74048648 TGGTGGTGGTGG
1 TGGTGGTGGTGG
74048660 GGACTTGTAG
Statistics
Matches: 52, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
20 1 0.02
21 28 0.54
23 1 0.02
24 4 0.08
25 1 0.02
27 16 0.31
28 1 0.02
ACGTcount: A:0.14, C:0.02, G:0.54, T:0.30
Consensus pattern (21 bp):
TGGTGGTGGTGGAGAGTGGAC
Found at i:74048809 original size:54 final size:53
Alignment explanation
Indices: 74048652--74048809 Score: 141
Period size: 54 Copynumber: 3.0 Consensus size: 53
74048642 GTGGACTGGT
* * * *
74048652 GGTGGTGGGGACTTGTAGTAGTAAGGTGGAGGTGGAGATGGCGACGGTGGAGGA
1 GGTGGTGGGGATTTGTAGTAGTAAGGAGGAGGTGGAGAT-GAGATGGTGGAGGA
* * * * *
74048706 ------GGGGATTTGTAATAGTATGGAGGTGGTGGTGATGGAGATGG-AGATGGA
1 GGTGGTGGGGATTTGTAGTAGTAAGGAGGAGGTGGAGAT-GAGATGGTGGA-GGA
*
74048754 GGTGGTGGGGATTTGTAGTAGTAAGGAGGAGGAGGAGATGATGATGGTGGAGGA
1 GGTGGTGGGGATTTGTAGTAGTAAGGAGGAGGTGGAGATGA-GATGGTGGAGGA
74048808 GG
1 GG
74048810 GGAGTTGTAA
Statistics
Matches: 80, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
47 2 0.03
48 36 0.45
53 2 0.03
54 38 0.47
55 2 0.03
ACGTcount: A:0.23, C:0.02, G:0.52, T:0.23
Consensus pattern (53 bp):
GGTGGTGGGGATTTGTAGTAGTAAGGAGGAGGTGGAGATGAGATGGTGGAGGA
Found at i:74048856 original size:246 final size:245
Alignment explanation
Indices: 74048483--74048989 Score: 556
Period size: 246 Copynumber: 2.1 Consensus size: 245
74048473 TGTAATAGTA
* * * *
74048483 TGGTGGTGGAGGAGATGGAGAAGGAGGAGGTGGTGATTTGTAGTAGTATGGTGGTGGAGGAGAAT
1 TGGTGGT-GAGGAGATGGAGAAGGAGGAGGTGGGGATTTGTAGTAGTAAGGAGGAGGAGGAGAAT
* * * ** * * *
74048548 GAATTGGTGGTGGTGGAGATTTGTAATAGTATGGTGGTGGTGGAGAGTGGACTGGTGGTGGTGGA
65 GAATTGGTGGAGGAGGAGAGTTGTAATAGTATGGTGGTGCAGGAGACTGCACTGGAGGTGGTGGA
* * * * *
74048613 GATTTGTAGTAGTATGGTGGTGGTGGAGA--GTGGACTGGTGGTGGTGGGGACTTGTAGTAGTAA
130 GATTTGTAGTAGTATGGCGGTGGAGGAGATGGT-GA-AGGAGGTGGAGGGGACTTGTAGTAGTAA
* * * * * *
74048676 GGTGGAGGTGGAGATGGCGACGGTGGAGGAGGGGATTTGTAATAGTATGGAGG
193 GGTGGAGGTGGAGAAGGAGAAGGTGGAGGAGGAGACTTGTAATAATATGGAGG
* *
74048729 TGGTGGTGATGGAGATGGAGATGGAGGTGGTGGGGATTTGTAGTAGTAAGGAGGAGGAGGAG-AT
1 TGGTGGTGA-GGAGATGGAGAAGGAGGAGGTGGGGATTTGTAGTAGTAAGGAGGAGGAGGAGAAT
* * * * *
74048793 G-ATGATGGTGGAGGAGGGGAGTTGTAATGGTA-GGTTGGTGCAGGGGCCTTCACTGGAGGTGGT
65 GAAT--TGGTGGAGGAGGAGAGTTGTAATAGTATGG-TGGTGCAGGAGACTGCACTGGAGGTGGT
* * *
74048856 GGTGATTTGTAGTAGTATGGCGGTGGAGGAGATGGTGAAGGAGGTGGAGGTGATTTGTAGTAGTA
127 GGAGATTTGTAGTAGTATGGCGGTGGAGGAGATGGTGAAGGAGGTGGAGGGGACTTGTAGTAGTA
* * * * *
74048921 TGGTGGAGGTGGTGAAGGAGAAGGTGGTGGTGGAGACTTGTAATAATATGGTGG
192 AGGTGGAGGTGGAGAAGGAGAAGGTGGAGGAGGAGACTTGTAATAATATGGAGG
*
74048975 AGGTGGTGAAGGAGA
1 TGGTGGTG-AGGAGA
74048990 AGGTAGTGGT
Statistics
Matches: 215, Mismatches: 39, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
244 2 0.01
245 7 0.03
246 201 0.93
247 3 0.01
248 2 0.01
ACGTcount: A:0.22, C:0.02, G:0.49, T:0.26
Consensus pattern (245 bp):
TGGTGGTGAGGAGATGGAGAAGGAGGAGGTGGGGATTTGTAGTAGTAAGGAGGAGGAGGAGAATG
AATTGGTGGAGGAGGAGAGTTGTAATAGTATGGTGGTGCAGGAGACTGCACTGGAGGTGGTGGAG
ATTTGTAGTAGTATGGCGGTGGAGGAGATGGTGAAGGAGGTGGAGGGGACTTGTAGTAGTAAGGT
GGAGGTGGAGAAGGAGAAGGTGGAGGAGGAGACTTGTAATAATATGGAGG
Found at i:74048973 original size:27 final size:27
Alignment explanation
Indices: 74048943--74049031 Score: 73
Period size: 27 Copynumber: 3.5 Consensus size: 27
74048933 TGAAGGAGAA
74048943 GGTGGTGGTGGAGACTTGTAATAATAT
1 GGTGGTGGTGGAGACTTGTAATAATAT
* ** * *
74048970 GGTGGAGGT-G-G---TG-AAGGAGAA
1 GGTGGTGGTGGAGACTTGTAATAATAT
*
74048991 GGTAGTGGTGGAGACTTGTAATAATAT
1 GGTGGTGGTGGAGACTTGTAATAATAT
*
74049018 GGTGGGGGTGGAGA
1 GGTGGTGGTGGAGA
74049032 GTGGACTGGT
Statistics
Matches: 43, Mismatches: 13, Indels: 12
0.63 0.19 0.18
Matches are distributed among these distances:
21 11 0.26
22 3 0.07
23 1 0.02
25 1 0.02
26 3 0.07
27 24 0.56
ACGTcount: A:0.26, C:0.02, G:0.46, T:0.26
Consensus pattern (27 bp):
GGTGGTGGTGGAGACTTGTAATAATAT
Found at i:74049112 original size:36 final size:36
Alignment explanation
Indices: 74049072--74049217 Score: 135
Period size: 36 Copynumber: 4.2 Consensus size: 36
74049062 GTATGGTGGA
* *
74049072 GGTGGTGGTGACTTGTAAACATAGGTAGGGCTTGGT
1 GGTGGTGGTGACTTATAAACATAAGTAGGGCTTGGT
*
74049108 GGTGGTGGTGACTTATAAACATAAGTGGGGCTTGGT
1 GGTGGTGGTGACTTATAAACATAAGTAGGGCTTGGT
* * * *
74049144 GGTGGCGGGGACTTAT--A-AT-AGTATGG--TGGA
1 GGTGGTGGTGACTTATAAACATAAGTAGGGCTTGGT
** * *
74049174 GGAAGTGGTGACTTGTAAACATAAGTA-GGCGATGGT
1 GGTGGTGGTGACTTATAAACATAAGTAGGGC-TTGGT
74049210 GGTGGTGG
1 GGTGGTGG
74049218 AGAGGTATAA
Statistics
Matches: 87, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
30 14 0.16
32 6 0.07
33 6 0.07
34 5 0.06
36 56 0.64
ACGTcount: A:0.23, C:0.08, G:0.42, T:0.28
Consensus pattern (36 bp):
GGTGGTGGTGACTTATAAACATAAGTAGGGCTTGGT
Found at i:74049933 original size:18 final size:18
Alignment explanation
Indices: 74049910--74049945 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
74049900 TAACCTTAGT
74049910 TTTTTTTCTTTTAATTTA
1 TTTTTTTCTTTTAATTTA
74049928 TTTTTTTCTTTTAATTTA
1 TTTTTTTCTTTTAATTTA
74049946 ATTTATTTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTTTCTTTTAATTTA
Found at i:74049939 original size:23 final size:22
Alignment explanation
Indices: 74049909--74049953 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
74049899 TTAACCTTAG
**
74049909 TTTTTTTTCTTTTAATTTATTT
1 TTTTTTTTAATTTAATTTATTT
74049931 TTTTCTTTTAATTTAATTTATTT
1 TTTT-TTTTAATTTAATTTATTT
74049954 CGGTAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTTTTTTAATTTAATTTATTT
Found at i:74050412 original size:27 final size:27
Alignment explanation
Indices: 74050382--74050468 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
74050372 ATGTGGAGGA
*
74050382 GGTGGCGGAGATTTATAGTAGTAAGGT
1 GGTGGTGGAGATTTATAGTAGTAAGGT
* *
74050409 GGTGGAGGAG----ATGGT-G-AAGGT
1 GGTGGTGGAGATTTATAGTAGTAAGGT
* * *
74050430 GGTGGTGGAGACTTGTAGTAGTAAGGA
1 GGTGGTGGAGATTTATAGTAGTAAGGT
74050457 GGTGGTGGAGAT
1 GGTGGTGGAGAT
74050469 GGTGATGGTG
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
21 14 0.30
22 1 0.02
23 4 0.09
25 3 0.06
26 1 0.02
27 24 0.51
ACGTcount: A:0.24, C:0.02, G:0.48, T:0.25
Consensus pattern (27 bp):
GGTGGTGGAGATTTATAGTAGTAAGGT
Found at i:74050434 original size:48 final size:48
Alignment explanation
Indices: 74050382--74050515 Score: 178
Period size: 48 Copynumber: 2.8 Consensus size: 48
74050372 ATGTGGAGGA
* *
74050382 GGTGGCGGAGATTTATAGTAGTAAGGTGGTGGAGGAGATGGTGAAGGT
1 GGTGGCGGAGACTTGTAGTAGTAAGGTGGTGGAGGAGATGGTGAAGGT
* * * *
74050430 GGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGGAGATGGTGATGGT
1 GGTGGCGGAGACTTGTAGTAGTAAGGTGGTGGAGGAGATGGTGAAGGT
* * * *
74050478 GGTGGGGGAGACTTGTAATAGTATGGTGGTGGGGGAGA
1 GGTGGCGGAGACTTGTAGTAGTAAGGTGGTGGAGGAGA
74050516 CTTCACTGGA
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.22, C:0.02, G:0.50, T:0.25
Consensus pattern (48 bp):
GGTGGCGGAGACTTGTAGTAGTAAGGTGGTGGAGGAGATGGTGAAGGT
Found at i:74050529 original size:24 final size:27
Alignment explanation
Indices: 74050472--74050533 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
74050462 TGGAGATGGT
*
74050472 GATGGTGGTGGGGGAGACTTGTAATAG
1 GATGGTGGTGGGGGAGACTTGCAATAG
* *
74050499 TATGGTGGTGGGGGAGACTT-CACT-G
1 GATGGTGGTGGGGGAGACTTGCAATAG
74050524 GA-GGTGGTGG
1 GATGGTGGTGG
74050534 CGACTTGTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 8 0.26
25 2 0.06
26 2 0.06
27 19 0.61
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (27 bp):
GATGGTGGTGGGGGAGACTTGCAATAG
Found at i:74050530 original size:48 final size:47
Alignment explanation
Indices: 74050379--74050550 Score: 157
Period size: 48 Copynumber: 3.6 Consensus size: 47
74050369 ATAATGTGGA
* * * * * * *
74050379 GGAGGTGGCGGAGATTTATAGTAGTAAGGTGGTGGAGGAGATGGTGAA
1 GGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGGGGAGAT-GTCAT
* * *
74050427 GGTGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGGAGATGGTGAT
1 GGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGGGGAGAT-GTCAT
* * * * *
74050475 GGTGGTGGGGGAGACTTGTAATAGTATGGTGGTGGGGGAGACT-TCACT
1 GGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGGGGAGA-TGTCA-T
*
74050523 GGAGGTGGTGGCGACTTGTAGTAGTAAG
1 GGAGGTGGTGGAGACTTGTAGTAGTAAG
74050551 TGTTAGAGTA
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
47 2 0.02
48 101 0.97
49 1 0.01
ACGTcount: A:0.22, C:0.05, G:0.48, T:0.26
Consensus pattern (47 bp):
GGAGGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGGGGAGATGTCAT
Found at i:74055807 original size:48 final size:48
Alignment explanation
Indices: 74055739--74056371 Score: 466
Period size: 48 Copynumber: 13.2 Consensus size: 48
74055729 ATAAGTCTAA
* * * * * * *
74055739 TAGTAAGGTGGTGGTGGAGATGGTGAGGGTGGTGGTGGAGATTTGTAG
1 TAGTAAGGAGGAGGTGGTGATGGAGATGGAGGTGGTGGAGACTTGTAG
* * * * * * *
74055787 TAGTAAGTAGGTGGTGGAGATGGTGATGGTGGTGGTGGAGACTTATAA
1 TAGTAAGGAGGAGGTGGTGATGGAGATGGAGGTGGTGGAGACTTGTAG
* * * * * * * *
74055835 TAGTAAGGTGGGGGTGGTGAAGGAGAAGGTGGAGGGGGAGACTTATAG
1 TAGTAAGGAGGAGGTGGTGATGGAGATGGAGGTGGTGGAGACTTGTAG
* * * * * ** * *
74055883 TAGTATGGTGGTGGGGGAGACTTCA-CTGGAGGTGGTGGGGACTTGTAG
1 TAGTAAGGAGGAGGTGGTGA-TGGAGATGGAGGTGGTGGAGACTTGTAG
* * * * * * *
74055931 TAGTAAGGTGGTGGTGGGGAAGGAGATGGAGGTGGCGGGGATTTGTAG
1 TAGTAAGGAGGAGGTGGTGATGGAGATGGAGGTGGTGGAGACTTGTAG
* * * **
74055979 TAGTAAGGAGGAGATGGTGATGGGGACGGTTGTGGTGGAGACTTGTAG
1 TAGTAAGGAGGAGGTGGTGATGGAGATGGAGGTGGTGGAGACTTGTAG
* * * * * *
74056027 TAATATGGAGGAAGTGGAGATGGAGATGGAGGAGGTGGGGACTTGTAG
1 TAGTAAGGAGGAGGTGGTGATGGAGATGGAGGTGGTGGAGACTTGTAG
* * * * *
74056075 TAGTATGGAGGAGGTGGGGAAGGAGATGGAGGTGGTGGGGATTTGTAG
1 TAGTAAGGAGGAGGTGGTGATGGAGATGGAGGTGGTGGAGACTTGTAG
* * * * *
74056123 TAATAAGGAGGAGGTGGTGACAGG-GACGGAGGTGGTGGAGACTTATTG
1 TAGTAAGGAGGAGGTGGTGA-TGGAGATGGAGGTGGTGGAGACTTGTAG
* * * * *
74056171 TAATATGGAGGAGGTGGGGATGGGGACGGAGGTGGTGGAGACTTGTAG
1 TAGTAAGGAGGAGGTGGTGATGGAGATGGAGGTGGTGGAGACTTGTAG
* * * *
74056219 TAGTACGGGGGAGGTGGTGATGGGGATGGTGGTGGTGGAGACTTGTAG
1 TAGTAAGGAGGAGGTGGTGATGGAGATGGAGGTGGTGGAGACTTGTAG
* * * * * *
74056267 TAGTATA-GAGGAGGTGGTGACGGGGATGGTGGTGGAGGAGAC--ATAA
1 TAGTA-AGGAGGAGGTGGTGATGGAGATGGAGGTGGTGGAGACTTGTAG
* * * * * *
74056313 TAGTATGGAGGAGGAGGTGATGGAGACGGTGGTGGTGGAGATTTATAG
1 TAGTAAGGAGGAGGTGGTGATGGAGATGGAGGTGGTGGAGACTTGTAG
* *
74056361 TGGTATGGAGG
1 TAGTAAGGAGG
74056372 GTTCAGTACT
Statistics
Matches: 475, Mismatches: 102, Indels: 16
0.80 0.17 0.03
Matches are distributed among these distances:
46 36 0.08
47 3 0.01
48 432 0.91
49 4 0.01
ACGTcount: A:0.23, C:0.03, G:0.50, T:0.24
Consensus pattern (48 bp):
TAGTAAGGAGGAGGTGGTGATGGAGATGGAGGTGGTGGAGACTTGTAG
Found at i:74055997 original size:144 final size:143
Alignment explanation
Indices: 74055769--74056353 Score: 538
Period size: 144 Copynumber: 4.1 Consensus size: 143
74055759 TGGTGAGGGT
* * * * * * *
74055769 GGTGGTGGAGATTTGTAGTAGTAA-GTAGGTGGTGGAGATGGTGATGGTGGTGGTGGAGACTTAT
1 GGTGGTGGAGACTTGTAGTAGTAAGGT-GGAGGTGGGGAAGGAGATGGAGGTGGTGGAGACTTGT
* * * * * * * * * *
74055833 AATAGTAAGGTGGGGGTGGTGAAGGAGAAGGTGGAGGGGGAGACTTATAGTAGTATGGTGGTGGG
65 AGTAGTAAGGAGGAGGTGGTGAAGGGGACGGTGGTGGTGGAGACTTATAGTAATATGGAGGAGGG
**
74055898 GGAGACTTCACTGGA
130 GGAGA-TGGACTGGA
* * * * *
74055913 GGTGGTGGGGACTTGTAGTAGTAAGGTGGTGGTGGGGAAGGAGATGGAGGTGGCGGGGATTTGTA
1 GGTGGTGGAGACTTGTAGTAGTAAGGTGGAGGTGGGGAAGGAGATGGAGGTGGTGGAGACTTGTA
* * * * * *
74055978 GTAGTAAGGAGGAGATGGTGATGGGGACGGTTGTGGTGGAGACTTGTAGTAATATGGAGGAAGTG
66 GTAGTAAGGAGGAGGTGGTGAAGGGGACGGTGGTGGTGGAGACTTATAGTAATATGGAGGAGGGG
*
74056043 GAGATGGAGATGGA
131 GAGATGGA-CTGGA
* * * * * *
74056057 GGAGGTGGGGACTTGTAGTAGTATGGAGGAGGTGGGGAAGGAGATGGAGGTGGTGGGGATTTGTA
1 GGTGGTGGAGACTTGTAGTAGTAAGGTGGAGGTGGGGAAGGAGATGGAGGTGGTGGAGACTTGTA
* * *
74056122 GTAATAAGGAGGAGGTGGTGACA-GGGACGGAGGTGGTGGAGACTTATTGTAATATGGAGGAGGT
66 GTAGTAAGGAGGAGGTGGTGA-AGGGGACGGTGGTGGTGGAGACTTATAGTAATATGGAGGAGG-
74056186 GGG-GATGGGGAC-GGA
129 GGGAGAT--GGACTGGA
* * * * * *
74056201 GGTGGTGGAGACTTGTAGTAGTACGGGGGAGGTGGTGATGGGGATGGTGGTGGTGGAGACTTGTA
1 GGTGGTGGAGACTTGTAGTAGTAAGGTGGAGGTGGGGAAGGAGATGGAGGTGGTGGAGACTTGTA
* * * * * *
74056266 GTAGTATA-GAGGAGGTGGTGACGGGGATGGTGGTGGAGGAGAC--ATAATAGTATGGAGGAGGA
66 GTAGTA-AGGAGGAGGTGGTGAAGGGGACGGTGGTGGTGGAGACTTATAGTAATATGGAGGAGGG
* *
74056328 GGTGATGGAGAC-GGT
130 GGAGAT-G-GACTGGA
74056343 GGTGGTGGAGA
1 GGTGGTGGAGA
74056354 TTTATAGTGG
Statistics
Matches: 367, Mismatches: 64, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
141 4 0.01
142 34 0.09
143 2 0.01
144 319 0.87
145 5 0.01
146 3 0.01
ACGTcount: A:0.23, C:0.03, G:0.50, T:0.23
Consensus pattern (143 bp):
GGTGGTGGAGACTTGTAGTAGTAAGGTGGAGGTGGGGAAGGAGATGGAGGTGGTGGAGACTTGTA
GTAGTAAGGAGGAGGTGGTGAAGGGGACGGTGGTGGTGGAGACTTATAGTAATATGGAGGAGGGG
GAGATGGACTGGA
Found at i:74056092 original size:27 final size:26
Alignment explanation
Indices: 74056012--74056139 Score: 87
Period size: 27 Copynumber: 5.2 Consensus size: 26
74056002 GGACGGTTGT
* *
74056012 GGTGGAGACTTGTAGTAATATGGAGGA
1 GGTGGGGA-TTGTAGTAGTATGGAGGA
* *
74056039 AGTGGAGA-TG--G-AG-ATGGAGGA
1 GGTGGGGATTGTAGTAGTATGGAGGA
74056060 GGTGGGGACTTGTAGTAGTATGGAGGA
1 GGTGGGGA-TTGTAGTAGTATGGAGGA
* *
74056087 GGTGGGGA----AGGAG-ATGGAGGT
1 GGTGGGGATTGTAGTAGTATGGAGGA
* *
74056108 GGTGGGGATTTGTAGTAATAAGGAGGA
1 GGTGGGGA-TTGTAGTAGTATGGAGGA
74056135 GGTGG
1 GGTGG
74056140 TGACAGGGAC
Statistics
Matches: 79, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
21 29 0.37
22 5 0.06
23 3 0.04
25 3 0.04
26 5 0.06
27 34 0.43
ACGTcount: A:0.27, C:0.02, G:0.50, T:0.22
Consensus pattern (26 bp):
GGTGGGGATTGTAGTAGTATGGAGGA
Found at i:74056104 original size:21 final size:21
Alignment explanation
Indices: 74056031--74056115 Score: 71
Period size: 21 Copynumber: 3.8 Consensus size: 21
74056021 TTGTAGTAAT
* * *
74056031 ATGGAGGAAGTGGAGATGGAG
1 ATGGAGGAGGTGGGGAAGGAG
*
74056052 ATGGAGGAGGTGGGGACTTGTAGTAG
1 ATGGAGGAGGTGGGGA-----AGGAG
74056078 TATGGAGGAGGTGGGGAAGGAG
1 -ATGGAGGAGGTGGGGAAGGAG
*
74056100 ATGGAGGTGGTGGGGA
1 ATGGAGGAGGTGGGGA
74056116 TTTGTAGTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
21 29 0.56
22 4 0.08
26 3 0.06
27 16 0.31
ACGTcount: A:0.26, C:0.01, G:0.55, T:0.18
Consensus pattern (21 bp):
ATGGAGGAGGTGGGGAAGGAG
Found at i:74056450 original size:48 final size:48
Alignment explanation
Indices: 74056394--74056529 Score: 173
Period size: 48 Copynumber: 2.8 Consensus size: 48
74056384 ATGTTTCGGT
* *
74056394 GGAGGTGGTGGTGACTTATACACATAAGGTGGTGGTGGAGAAGGCGAA
1 GGAGGTGGTGGTGACTTATACACATAAGGTGGTGGAGGAGAAGGAGAA
* * * * * *
74056442 GGAGGTGGTGGAGATTTATACACGTATGGTGGTGGGGGAGATGGAGAA
1 GGAGGTGGTGGTGACTTATACACATAAGGTGGTGGAGGAGAAGGAGAA
* * *
74056490 GGTGGTGGAGGTGACTTATACTCATAAGGTGGTGGAGGAG
1 GGAGGTGGTGGTGACTTATACACATAAGGTGGTGGAGGAG
74056530 GTGAAGAGTA
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.25, C:0.07, G:0.46, T:0.23
Consensus pattern (48 bp):
GGAGGTGGTGGTGACTTATACACATAAGGTGGTGGAGGAGAAGGAGAA
Found at i:74058381 original size:14 final size:15
Alignment explanation
Indices: 74058358--74058387 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
74058348 ATAATTTCTA
74058358 TATTTAAATTTAAAT
1 TATTTAAATTTAAAT
74058373 TATTT-AATTTAAAT
1 TATTTAAATTTAAAT
74058387 T
1 T
74058388 GGGGTTGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TATTTAAATTTAAAT
Found at i:74060685 original size:21 final size:22
Alignment explanation
Indices: 74060643--74060685 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
74060633 TTTTCCATCC
** *
74060643 TCTTCTGCTTCTCTCTCTATTT
1 TCTTCTGCTTCTCGATCCATTT
74060665 TCTTCT-CTTCTCGATCCATTT
1 TCTTCTGCTTCTCGATCCATTT
74060686 CTTTGAACAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.07, C:0.33, G:0.05, T:0.56
Consensus pattern (22 bp):
TCTTCTGCTTCTCGATCCATTT
Found at i:74061372 original size:39 final size:39
Alignment explanation
Indices: 74061318--74061396 Score: 108
Period size: 39 Copynumber: 2.0 Consensus size: 39
74061308 GTGTTAACAA
* *
74061318 ATGGAAAATATAGAAAAACTAAA-TTAAAAGAA-ATAGAAG
1 ATGGAAAATAAAGAAAAA--AAAGTTAAAAGAACATAAAAG
74061357 ATGGAAAATAAAGAAAAAAAAGTTAAAAGAACATAAAAG
1 ATGGAAAATAAAGAAAAAAAAGTTAAAAGAACATAAAAG
74061396 A
1 A
74061397 AAAGAATTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
37 3 0.08
38 9 0.25
39 24 0.67
ACGTcount: A:0.67, C:0.03, G:0.15, T:0.15
Consensus pattern (39 bp):
ATGGAAAATAAAGAAAAAAAAGTTAAAAGAACATAAAAG
Found at i:74062728 original size:25 final size:26
Alignment explanation
Indices: 74062683--74062731 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
74062673 CTTAATAATA
*
74062683 ACTTAAAATCTATATATTTTTATTAC
1 ACTTAAAATCTATATAATTTTATTAC
74062709 ACTTAAATATC-AT-TAATTTTATT
1 ACTTAAA-ATCTATATAATTTTATT
74062732 TTGTTACCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 9 0.43
26 9 0.43
27 3 0.14
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (26 bp):
ACTTAAAATCTATATAATTTTATTAC
Found at i:74064979 original size:17 final size:19
Alignment explanation
Indices: 74064949--74064985 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
74064939 TTATAAATTT
74064949 CAAGTCAAAATAT-ACCAA
1 CAAGTCAAAATATAACCAA
*
74064967 CAAG-CAAACTATAACCAA
1 CAAGTCAAAATATAACCAA
74064985 C
1 C
74064986 TCAGTTGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.54, C:0.27, G:0.05, T:0.14
Consensus pattern (19 bp):
CAAGTCAAAATATAACCAA
Found at i:74067802 original size:23 final size:22
Alignment explanation
Indices: 74067772--74067846 Score: 64
Period size: 23 Copynumber: 3.4 Consensus size: 22
74067762 AATATATATC
74067772 ATCAAAATTAACAAAGTCAGAGA
1 ATCAAAATTAACAAAGT-AGAGA
* * * **
74067795 ATCAAAATATGA-ATA-TATATC
1 ATCAAAAT-TAACAAAGTAGAGA
74067816 ATCAAAATTAACAAAGTTAGAGA
1 ATCAAAATTAACAAAG-TAGAGA
74067839 ATCAAAAT
1 ATCAAAAT
74067847 AATCGAGTTG
Statistics
Matches: 38, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
20 2 0.05
21 12 0.32
22 1 0.03
23 21 0.55
24 2 0.05
ACGTcount: A:0.56, C:0.11, G:0.09, T:0.24
Consensus pattern (22 bp):
ATCAAAATTAACAAAGTAGAGA
Found at i:74067822 original size:44 final size:44
Alignment explanation
Indices: 74067759--74067847 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
74067749 TTATCGTGCC
74067759 ATGAATATATATCATCAAAATTAACAAAGTCAGAGAATCAAAAT
1 ATGAATATATATCATCAAAATTAACAAAGTCAGAGAATCAAAAT
*
74067803 ATGAATATATATCATCAAAATTAACAAAGTTAGAGAATCAAAAT
1 ATGAATATATATCATCAAAATTAACAAAGTCAGAGAATCAAAAT
74067847 A
1 A
74067848 ATCGAGTTGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.55, C:0.10, G:0.09, T:0.26
Consensus pattern (44 bp):
ATGAATATATATCATCAAAATTAACAAAGTCAGAGAATCAAAAT
Found at i:74068570 original size:20 final size:20
Alignment explanation
Indices: 74068545--74068583 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74068535 GAATATCTAT
*
74068545 CTTTATCAATTATATTAAAA
1 CTTTATCAACTATATTAAAA
*
74068565 CTTTATTAACTATATTAAA
1 CTTTATCAACTATATTAAA
74068584 TTGAGTGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (20 bp):
CTTTATCAACTATATTAAAA
Found at i:74082456 original size:16 final size:17
Alignment explanation
Indices: 74082424--74082457 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
74082414 AATATTAATA
*
74082424 TTTAGAGTTTTATAATT
1 TTTAGAGTTTTAAAATT
74082441 TTTAGAG-TTTAAAATT
1 TTTAGAGTTTTAAAATT
74082457 T
1 T
74082458 AAGATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (17 bp):
TTTAGAGTTTTAAAATT
Found at i:74087697 original size:93 final size:91
Alignment explanation
Indices: 74087538--74087758 Score: 298
Period size: 93 Copynumber: 2.4 Consensus size: 91
74087528 TTCGACATGA
* * * * * *
74087538 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCATTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTGTCACGTTGCCATGATATCATTCAAC
** * *
74087603 CATGGTCTTATTCATTTCCCCGTCACGT
65 CATGGTCTTACACATTT-CACATCACGT
*
74087631 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGATATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TGTCACGTTGCCATGATATCATTCAAC
* *
74087696 CATGGTCTTACACATTTCATATCAGGT
65 CATGGTCTTACACATTTCACATCACGT
74087723 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
74087759 TCTATCAGAG
Statistics
Matches: 114, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
92 46 0.40
93 68 0.60
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.39
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTGTCACGTTGCCATGATATCATTCAACC
ATGGTCTTACACATTTCACATCACGT
Found at i:74087766 original size:46 final size:46
Alignment explanation
Indices: 74087538--74087761 Score: 290
Period size: 46 Copynumber: 4.8 Consensus size: 46
74087528 TTCGACATGA
* * * * *
74087538 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTGTCACGT
* ** * *
74087584 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-TCTGTCACGT
74087631 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TGTCACGT
* * *
74087677 TGCCATGATATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TGTCACGT
74087723 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCT
74087762 ATCAGAGAGC
Statistics
Matches: 158, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
45 1 0.01
46 116 0.73
47 41 0.26
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTGTCACGT
Found at i:74091557 original size:13 final size:13
Alignment explanation
Indices: 74091539--74091609 Score: 103
Period size: 12 Copynumber: 5.7 Consensus size: 13
74091529 ATACAAGTTT
*
74091539 GAAAAAAAAAATC
1 GAAAAAAAAATTC
74091552 G-AAAAAAAATTC
1 GAAAAAAAAATTC
74091564 GAAAAAAAAATTC
1 GAAAAAAAAATTC
74091577 G-AAAAAAAATTC
1 GAAAAAAAAATTC
*
74091589 AAAAAAAAAATT-
1 GAAAAAAAAATTC
74091601 GAAAAAAAA
1 GAAAAAAAA
74091610 GTGATTTATA
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
12 30 0.57
13 23 0.43
ACGTcount: A:0.75, C:0.06, G:0.07, T:0.13
Consensus pattern (13 bp):
GAAAAAAAAATTC
Found at i:74091567 original size:25 final size:25
Alignment explanation
Indices: 74091539--74091609 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
74091529 ATACAAGTTT
74091539 GAAAAAAAAAATCGAAAAAAAATTC
1 GAAAAAAAAAATCGAAAAAAAATTC
*
74091564 GAAAAAAAAATTCGAAAAAAAATTC
1 GAAAAAAAAAATCGAAAAAAAATTC
*
74091589 -AAAAAAAAAATTGAAAAAAAA
1 GAAAAAAAAAATCGAAAAAAAA
74091610 GTGATTTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
24 19 0.44
25 24 0.56
ACGTcount: A:0.75, C:0.06, G:0.07, T:0.13
Consensus pattern (25 bp):
GAAAAAAAAAATCGAAAAAAAATTC
Found at i:74092555 original size:21 final size:20
Alignment explanation
Indices: 74092521--74092588 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
74092511 ACATTCTTGT
74092521 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAA-AAAAGA
*
74092542 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAAGCAAAAAAAG-A
* *
74092563 AAAGAAAACGAAATAAAAAGA
1 AAAGAAAAAGCAA-AAAAAGA
74092584 AAAGA
1 AAAGA
74092589 GATGTAACAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 8 0.20
21 27 0.68
22 5 0.12
ACGTcount: A:0.76, C:0.04, G:0.18, T:0.01
Consensus pattern (20 bp):
AAAGAAAAAGCAAAAAAAGA
Found at i:74092556 original size:6 final size:5
Alignment explanation
Indices: 74092532--74092588 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
74092522 AAGAGAAAAC
*
74092532 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAACGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
74092579 AAAGA AAAGA
1 AAAGA AAAGA
74092589 GATGTAACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:74092563 original size:15 final size:14
Alignment explanation
Indices: 74092532--74092588 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
74092522 AAGAGAAAAC
74092532 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
74092548 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
74092563 AAAGAAAACGAAATAA
1 AAAGAAAA-G-AAGAA
74092579 AAAGAAAAGA
1 AAAGAAAAGA
74092589 GATGTAACAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:74094263 original size:41 final size:41
Alignment explanation
Indices: 74094206--74094443 Score: 442
Period size: 41 Copynumber: 5.8 Consensus size: 41
74094196 GAATGTAATA
* *
74094206 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
74094247 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
74094288 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
74094329 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
74094370 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
74094411 CAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG
1 CAGACTATATGTCTAGCAGGCTTAA-TGCCGGTG
74094444 TACTGAATCA
Statistics
Matches: 194, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
40 3 0.02
41 191 0.98
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (41 bp):
CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
Found at i:74094468 original size:123 final size:123
Alignment explanation
Indices: 74094206--74094485 Score: 449
Period size: 123 Copynumber: 2.3 Consensus size: 123
74094196 GAATGTAATA
74094206 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
*
74094271 ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
66 ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATAT
* *
74094329 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
74094394 ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAAT
66 ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTAA-TGCCGGTGATACAT--AT
* * **
74094452 CAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
74094486 ATCTGTTTAA
Statistics
Matches: 145, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
121 1 0.01
122 6 0.04
123 138 0.95
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (123 bp):
CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATAT
Found at i:74100205 original size:29 final size:30
Alignment explanation
Indices: 74100148--74100215 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
74100138 CACCTTTAAA
* * * *
74100148 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTC
*
74100178 ATATTTACACT-TTAATCCCTCAAATTTTG
1 ATATTTACACTATTAATCCCTCAAATTTTC
74100207 AGTATTTAC
1 A-TATTTAC
74100216 TCTTGGGCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.46
Consensus pattern (30 bp):
ATATTTACACTATTAATCCCTCAAATTTTC
Found at i:74101396 original size:26 final size:24
Alignment explanation
Indices: 74101365--74101428 Score: 69
Period size: 25 Copynumber: 2.7 Consensus size: 24
74101355 TTTTCAAATA
*
74101365 TTTTAAAAGAATTTAATTAATTTT
1 TTTTAAAAGAATTTAATGAATTTT
* *
74101389 TTAATTAAAAG-GTGTAATGAATTTT
1 TT--TTAAAAGAATTTAATGAATTTT
74101414 TTTTAAAA-AATTTAA
1 TTTTAAAAGAATTTAA
74101429 GAAAGAAATC
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
23 10 0.31
24 2 0.06
25 13 0.41
26 7 0.22
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (24 bp):
TTTTAAAAGAATTTAATGAATTTT
Found at i:74107205 original size:217 final size:218
Alignment explanation
Indices: 74106826--74107266 Score: 733
Period size: 217 Copynumber: 2.0 Consensus size: 218
74106816 TACTAGTGTA
*
74106826 TTTCTTTTGGAGTTTTGAGGAAAAATCATTTACCAAATAAGTCAACAAAACTACTCATACTACAG
1 TTTCTTTTGGAGTTTCGAGGAAAAATCATTTACCAAATAAGTCAACAAAACTACTCATACTACAG
*
74106891 TGTTTTTATGTCAACTACAACTAGTTTCACGTGACCTGTTTTTATAAGATTTGTCCTACTCATAT
66 TGTTTTTATGTCAACCACAACTAGTTTCACGTGACCTGTTTTTATAAGATTTGTCCTACTCATAT
* *
74106956 GCCATCTTTGGCTTACTTTCTATACATTGCAGTTGGAGATTCCAAAAC-AGTACTTAATCCAAAT
131 GCCAGCTTTGGCTTACTATCTATACATTGCAGTTGGAGATTCCAAAACAAGTACTTAATCCAAAT
74107020 TTGTTCAATGCTTGGATGATGCT
196 TTGTTCAATGCTTGGATGATGCT
* *
74107043 TTTCTTTTGGAGTTTCGAGGAAAAATCATTTACCAAATATA-TCGACAAAATTACTCATACTACA
1 TTTCTTTTGGAGTTTCGAGGAAAAATCATTTACCAAATA-AGTCAACAAAACTACTCATACTACA
* ** **
74107107 GTGTTTTTATGTCAACCGCAACTAGTTTCTTGTGACCTGTTTTTATAAGATTTGTTGTACTCATA
65 GTGTTTTTATGTCAACCACAACTAGTTTCACGTGACCTGTTTTTATAAGATTTGTCCTACTCATA
* * *
74107172 TGCCAGCTTTGGCTTACTATCTATACTTTGCAGTTGGAGATTCCAAAACAATTACTTGATCCAAA
130 TGCCAGCTTTGGCTTACTATCTATACATTGCAGTTGGAGATTCCAAAACAAGTACTTAATCCAAA
74107237 TTTGTTCAATGCTTGGATGATGCT
195 TTTGTTCAATGCTTGGATGATGCT
74107261 TTTCTT
1 TTTCTT
74107267 AAATGTTTTG
Statistics
Matches: 208, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
217 164 0.79
218 44 0.21
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (218 bp):
TTTCTTTTGGAGTTTCGAGGAAAAATCATTTACCAAATAAGTCAACAAAACTACTCATACTACAG
TGTTTTTATGTCAACCACAACTAGTTTCACGTGACCTGTTTTTATAAGATTTGTCCTACTCATAT
GCCAGCTTTGGCTTACTATCTATACATTGCAGTTGGAGATTCCAAAACAAGTACTTAATCCAAAT
TTGTTCAATGCTTGGATGATGCT
Found at i:74112819 original size:12 final size:12
Alignment explanation
Indices: 74112804--74112828 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74112794 TCTCTCTCTA
74112804 TATATATATATG
1 TATATATATATG
74112816 TATATATATATG
1 TATATATATATG
74112828 T
1 T
74112829 GTGTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TATATATATATG
Found at i:74127559 original size:29 final size:27
Alignment explanation
Indices: 74127526--74127607 Score: 83
Period size: 30 Copynumber: 2.8 Consensus size: 27
74127516 ATAAATCCCA
74127526 AATTTATACATAAATTTTGATTAATAT
1 AATTTATACATAAATTTTGATTAATAT
* * *
74127553 GCAATTTGATACATGAATTTTAATTTGATAT
1 --AATTT-ATACATAAATTTTGA-TTAATAT
74127584 AATTGTATACATGAAATTTTGATT
1 AATT-TATACAT-AAATTTTGATT
74127608 GTGGTTCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
29 17 0.39
30 21 0.48
31 6 0.14
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (27 bp):
AATTTATACATAAATTTTGATTAATAT
Found at i:74132555 original size:19 final size:18
Alignment explanation
Indices: 74132514--74132556 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
74132504 AAATTAGTTG
* *
74132514 ATTTATATTTTATATAAA
1 ATTTATAATTCATATAAA
*
74132532 TTTTATAATTCATCATAAA
1 ATTTATAATTCAT-ATAAA
74132551 ATTTAT
1 ATTTAT
74132557 TTGATAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTATAATTCATATAAA
Found at i:74136773 original size:28 final size:27
Alignment explanation
Indices: 74136708--74136784 Score: 75
Period size: 28 Copynumber: 2.8 Consensus size: 27
74136698 ATTATATAAA
* *
74136708 AAATAATTTTTATTTATTTTTAATCAT
1 AAATACTTTTTATTTAATTTTAATCAT
**
74136735 ATTTACTTTTTTATTTCCAATTTTAAT-AT
1 AAATAC-TTTTTATTT--AATTTTAATCAT
*
74136764 AAATACTTTTTATTTTATTTT
1 AAATACTTTTTATTTAATTTT
74136785 CAATTTTTGT
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
26 5 0.12
27 3 0.08
28 18 0.45
29 6 0.15
30 8 0.20
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (27 bp):
AAATACTTTTTATTTAATTTTAATCAT
Found at i:74136851 original size:19 final size:20
Alignment explanation
Indices: 74136827--74136868 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
74136817 TCTCACATTT
74136827 TATTTGTTTCT-TGTTTTAA
1 TATTTGTTTCTATGTTTTAA
* *
74136846 TATTTGTTTTTATGTTTTTA
1 TATTTGTTTCTATGTTTTAA
74136866 TAT
1 TAT
74136869 GTTTTTGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.17, C:0.02, G:0.10, T:0.71
Consensus pattern (20 bp):
TATTTGTTTCTATGTTTTAA
Found at i:74136902 original size:18 final size:18
Alignment explanation
Indices: 74136850--74136899 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
74136840 TTTTAATATT
74136850 TGTTTTT-ATGTTTTTATA
1 TGTTTTTAAT-TTTTTATA
* *
74136868 TGTTTTTGATTTATTATA
1 TGTTTTTAATTTTTTATA
74136886 T-TTTTTAATTTTTT
1 TGTTTTTAATTTTTT
74136900 TATTTAATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 11 0.39
18 15 0.54
19 2 0.07
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (18 bp):
TGTTTTTAATTTTTTATA
Found at i:74136903 original size:16 final size:16
Alignment explanation
Indices: 74136860--74136904 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
74136850 TGTTTTTATG
*
74136860 TTTTTATATGTTTTTGA
1 TTTTTATAT-TTTTTAA
74136877 TTTATTATATTTTTTAA
1 TTT-TTATATTTTTTAA
*
74136894 TTTTTTTATTT
1 TTTTTATATTT
74136905 AATGAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 7 0.28
17 12 0.48
18 6 0.24
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (16 bp):
TTTTTATATTTTTTAA
Found at i:74139662 original size:62 final size:62
Alignment explanation
Indices: 74139596--74139720 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
74139586 TTTCTAGAAA
74139596 ATAAATTATTTTTCAGAATTTATTTTCAATACGACAAACGCAACCTCATATTCAATACTAAT
1 ATAAATTATTTTTCAGAATTTATTTTCAATACGACAAACGCAACCTCATATTCAATACTAAT
74139658 ATAAATTATTTTTCAGAATTTATTTTCAATACGACAAACGCAACCTCATATTCAATACTAAT
1 ATAAATTATTTTTCAGAATTTATTTTCAATACGACAAACGCAACCTCATATTCAATACTAAT
74139720 A
1 A
74139721 CTTAAATCAC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.37
Consensus pattern (62 bp):
ATAAATTATTTTTCAGAATTTATTTTCAATACGACAAACGCAACCTCATATTCAATACTAAT
Found at i:74149195 original size:19 final size:18
Alignment explanation
Indices: 74149173--74149212 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
74149163 TATTCTAAAC
*
74149173 ATATATTTTTAGTATTTTT
1 ATATATTTTTAAT-TTTTT
74149192 ATATATTTTTAATTTTTT
1 ATATATTTTTAATTTTTT
74149210 ATA
1 ATA
74149213 ACAAATCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
ATATATTTTTAATTTTTT
Found at i:74149208 original size:8 final size:10
Alignment explanation
Indices: 74149173--74149212 Score: 50
Period size: 9 Copynumber: 4.3 Consensus size: 10
74149163 TATTCTAAAC
74149173 ATATATTTTT
1 ATATATTTTT
*
74149183 A-GTATTTTT
1 ATATATTTTT
74149192 ATATATTTTT
1 ATATATTTTT
74149202 A-AT-TTTTT
1 ATATATTTTT
74149210 ATA
1 ATA
74149213 ACAAATCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
8 6 0.23
9 11 0.42
10 9 0.35
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (10 bp):
ATATATTTTT
Found at i:74151306 original size:5 final size:5
Alignment explanation
Indices: 74151296--74151322 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
74151286 TTATGTTTTA
74151296 ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT AT
74151323 ATAAACTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:74152606 original size:10 final size:10
Alignment explanation
Indices: 74152591--74152621 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
74152581 CTGCTGGAAT
74152591 TGAAGAGAAA
1 TGAAGAGAAA
74152601 TGAAGAGAAA
1 TGAAGAGAAA
74152611 TGAAGAGAAA
1 TGAAGAGAAA
74152621 T
1 T
74152622 CTAGATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.29, T:0.13
Consensus pattern (10 bp):
TGAAGAGAAA
Found at i:74155058 original size:5 final size:5
Alignment explanation
Indices: 74155048--74155100 Score: 97
Period size: 5 Copynumber: 10.4 Consensus size: 5
74155038 TTATGTTTTA
74155048 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATATAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT-TAT
74155099 AT
1 AT
74155101 AACCTAAAGA
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 42 0.89
6 5 0.11
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:74156701 original size:6 final size:6
Alignment explanation
Indices: 74156691--74156721 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
74156681 GTCGAATATT
*
74156691 GTTACT GTTACC GTTACC GTTACC GTTACC G
1 GTTACC GTTACC GTTACC GTTACC GTTACC G
74156722 ATTCAACACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.16, C:0.29, G:0.19, T:0.35
Consensus pattern (6 bp):
GTTACC
Found at i:74156982 original size:18 final size:18
Alignment explanation
Indices: 74156931--74156982 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
74156921 AAAGGTATAA
*
74156931 AATAACTGATTATTACTG
1 AATAACTGATTATTACCG
* * *
74156949 AATAATTGACTGTTACCG
1 AATAACTGATTATTACCG
*
74156967 GATAACTGATTATTAC
1 AATAACTGATTATTAC
74156983 TAAAAAAGAT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (18 bp):
AATAACTGATTATTACCG
Found at i:74163889 original size:17 final size:18
Alignment explanation
Indices: 74163869--74163902 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74163859 ATAACTTCTA
74163869 TTAAAT-TATAATTATTT
1 TTAAATGTATAATTATTT
*
74163886 TTAAATGTATAGTTATT
1 TTAAATGTATAATTATT
74163903 CCAACTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (18 bp):
TTAAATGTATAATTATTT
Found at i:74164143 original size:31 final size:30
Alignment explanation
Indices: 74164099--74164162 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 30
74164089 ATTATGAAAT
* *
74164099 AAATGTTAAAATTTATTTAAGTATAAATTA
1 AAATATTAAAATTTATTTAAATATAAATTA
*
74164129 AAATATTAATAATTTATTTAAATGTAAATTA
1 AAATATTAA-AATTTATTTAAATATAAATTA
74164160 AAA
1 AAA
74164163 GGTAAGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 8 0.27
31 22 0.73
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (30 bp):
AAATATTAAAATTTATTTAAATATAAATTA
Found at i:74166201 original size:18 final size:18
Alignment explanation
Indices: 74166174--74166266 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
74166164 TACGACCGTT
74166174 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
74166192 TACGGCACTATTTACGTA
1 TACGGTACTATTCACGTA
*
74166210 TATGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
74166228 TACAGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
74166246 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
74166264 TAC
1 TAC
74166267 AGTAGTTGAG
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:74166224 original size:36 final size:36
Alignment explanation
Indices: 74166174--74166268 Score: 154
Period size: 36 Copynumber: 2.6 Consensus size: 36
74166164 TACGACCGTT
* *
74166174 TACGGTACTATTCACGTATACGGCACTATTTACGTA
1 TACGGTACTATTCACGTATACAGCACTATTCACGTA
*
74166210 TATGGTACTATTCACGTATACAGCACTATTCACGTA
1 TACGGTACTATTCACGTATACAGCACTATTCACGTA
*
74166246 TACGGTACTGTTCACGTATACAG
1 TACGGTACTATTCACGTATACAG
74166269 TAGTTGAGAT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (36 bp):
TACGGTACTATTCACGTATACAGCACTATTCACGTA
Found at i:74171288 original size:491 final size:491
Alignment explanation
Indices: 74170366--74171348 Score: 1957
Period size: 491 Copynumber: 2.0 Consensus size: 491
74170356 AAAGGCACCG
74170366 AAAGTAGAAAGTAAGATTGGTTGGCAAGTTGGGTTAAAAGTTGGCATGGGATAATTGCAATTTTG
1 AAAGTAGAAAGTAAGATTGGTTGGCAAGTTGGGTTAAAAGTTGGCATGGGATAATTGCAATTTTG
74170431 GTCCCTAATTGTATAGGGACATTGCAAGTTGATCCTTAAACCTCAACTATAAATAGGCCTAACCA
66 GTCCCTAATTGTATAGGGACATTGCAAGTTGATCCTTAAACCTCAACTATAAATAGGCCTAACCA
74170496 TCTCTTACTTTCTTCATCCCACACTTGCCATTCTCTACTTAAGGCAATTGTTCTCTCTCCCTATT
131 TCTCTTACTTTCTTCATCCCACACTTGCCATTCTCTACTTAAGGCAATTGTTCTCTCTCCCTATT
74170561 TGTAAACTTTCACTTGTATTTTTGGAGTGAAATATATTTGGTAGTGCCCGAGGACGTAGGCAAAA
196 TGTAAACTTTCACTTGTATTTTTGGAGTGAAATATATTTGGTAGTGCCCGAGGACGTAGGCAAAA
74170626 TTTGCTGAACCTCGTTAAAATTCTAGTGTTCTTTATTTTTGTTCTGCATATTTTGCAAGTGTCAT
261 TTTGCTGAACCTCGTTAAAATTCTAGTGTTCTTTATTTTTGTTCTGCATATTTTGCAAGTGTCAT
74170691 TGTAGTGATTTATTGTGCTATTAAATTACGATAGAGGGATATTCTGGCTAGGAAAGATCTAGTAT
326 TGTAGTGATTTATTGTGCTATTAAATTACGATAGAGGGATATTCTGGCTAGGAAAGATCTAGTAT
74170756 GTAAGCGATCCTCGTGATCCACCTCTCTTTCCTGGGAATTGAACTTAGTGTGATTTTTCAGTACA
391 GTAAGCGATCCTCGTGATCCACCTCTCTTTCCTGGGAATTGAACTTAGTGTGATTTTTCAGTACA
74170821 ATAATTTTACTCTTTCACACGCTTCCGCGCAACAAT
456 ATAATTTTACTCTTTCACACGCTTCCGCGCAACAAT
74170857 AAAGTAGAAAGTAAGATTGGTTGGCAAGTTGGGTTAAAAGTTGGCATGGGATAATTGCAATTTTG
1 AAAGTAGAAAGTAAGATTGGTTGGCAAGTTGGGTTAAAAGTTGGCATGGGATAATTGCAATTTTG
74170922 GTCCCTAATTGTATAGGGACATTGCAAGTTGATCCTTAAACCTCAACTATAAATAGGCCTAACCA
66 GTCCCTAATTGTATAGGGACATTGCAAGTTGATCCTTAAACCTCAACTATAAATAGGCCTAACCA
74170987 TCTCTTACTTTCTTCATCCCACACTTGCCATTCTCTACTTAAGGCAATTGTTCTCTCTCCCTATT
131 TCTCTTACTTTCTTCATCCCACACTTGCCATTCTCTACTTAAGGCAATTGTTCTCTCTCCCTATT
74171052 TGTAAACTTTCACTTGTATTTTTGGAGTGAAATATATTTGGTAGTGCCCGAGGACGTAGGCAAAA
196 TGTAAACTTTCACTTGTATTTTTGGAGTGAAATATATTTGGTAGTGCCCGAGGACGTAGGCAAAA
74171117 TTTGCTGAACCTCGTTAAAATTCTAGTGTTCTTTATTTTTGTTCTGCATATTTTGCAAGTGTCAT
261 TTTGCTGAACCTCGTTAAAATTCTAGTGTTCTTTATTTTTGTTCTGCATATTTTGCAAGTGTCAT
*
74171182 TGTAGTGATTTATTGTGCTATTAAATTACGATAGAGGGATATTCTGGCTAGGAAAGATCTGGTAT
326 TGTAGTGATTTATTGTGCTATTAAATTACGATAGAGGGATATTCTGGCTAGGAAAGATCTAGTAT
74171247 GTAAGCGATCCTCGTGATCCACCTCTCTTTCCTGGGAATTGAACTTAGTGTGATTTTTCAGTACA
391 GTAAGCGATCCTCGTGATCCACCTCTCTTTCCTGGGAATTGAACTTAGTGTGATTTTTCAGTACA
74171312 ATAATTTTACTCTTTCACACGCTTCCGCGCAACAAT
456 ATAATTTTACTCTTTCACACGCTTCCGCGCAACAAT
74171348 A
1 A
74171349 TCGTTCTGGG
Statistics
Matches: 491, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
491 491 1.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (491 bp):
AAAGTAGAAAGTAAGATTGGTTGGCAAGTTGGGTTAAAAGTTGGCATGGGATAATTGCAATTTTG
GTCCCTAATTGTATAGGGACATTGCAAGTTGATCCTTAAACCTCAACTATAAATAGGCCTAACCA
TCTCTTACTTTCTTCATCCCACACTTGCCATTCTCTACTTAAGGCAATTGTTCTCTCTCCCTATT
TGTAAACTTTCACTTGTATTTTTGGAGTGAAATATATTTGGTAGTGCCCGAGGACGTAGGCAAAA
TTTGCTGAACCTCGTTAAAATTCTAGTGTTCTTTATTTTTGTTCTGCATATTTTGCAAGTGTCAT
TGTAGTGATTTATTGTGCTATTAAATTACGATAGAGGGATATTCTGGCTAGGAAAGATCTAGTAT
GTAAGCGATCCTCGTGATCCACCTCTCTTTCCTGGGAATTGAACTTAGTGTGATTTTTCAGTACA
ATAATTTTACTCTTTCACACGCTTCCGCGCAACAAT
Found at i:74181225 original size:21 final size:21
Alignment explanation
Indices: 74181201--74181241 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74181191 ATCTGCTCAA
* *
74181201 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
74181222 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
74181242 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:74198775 original size:5 final size:5
Alignment explanation
Indices: 74198765--74198806 Score: 77
Period size: 5 Copynumber: 8.6 Consensus size: 5
74198755 CAATTTGTGA
74198765 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
74198807 GAACACACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 32 0.89
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:74200505 original size:42 final size:42
Alignment explanation
Indices: 74200458--74200544 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
74200448 ACTAAATCTC
74200458 AAATTTTATTAAATCACAATAACTAACACTATATTTAAACCT
1 AAATTTTATTAAATCACAATAACTAACACTATATTTAAACCT
74200500 AAATTTTATTAAATCACAATAACTAACACTATATTTAAACCT
1 AAATTTTATTAAATCACAATAACTAACACTATATTTAAACCT
74200542 AAA
1 AAA
74200545 AAGTTATTCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.34
Consensus pattern (42 bp):
AAATTTTATTAAATCACAATAACTAACACTATATTTAAACCT
Found at i:74206178 original size:58 final size:57
Alignment explanation
Indices: 74206049--74206179 Score: 199
Period size: 57 Copynumber: 2.3 Consensus size: 57
74206039 AACTACACTA
74206049 GTTTCAAGTTAAAACATAATCTCATAGTGATCTCCGCCACACATCTTTATAGAAACG
1 GTTTCAAGTTAAAACATAATCTCATAGTGATCTCCGCCACACATCTTTATAGAAACG
* * * * * *
74206106 ATCTCGAGTTAAAACATAGTCTCATAGTGATCTCTGCCACCACATCTTTATCGAAACG
1 GTTTCAAGTTAAAACATAATCTCATAGTGATCTCCGCCA-CACATCTTTATAGAAACG
74206164 GTTTCAAGTTAAAACA
1 GTTTCAAGTTAAAACA
74206180 CATCTTTATC
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
57 34 0.53
58 30 0.47
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (57 bp):
GTTTCAAGTTAAAACATAATCTCATAGTGATCTCCGCCACACATCTTTATAGAAACG
Found at i:74206187 original size:32 final size:32
Alignment explanation
Indices: 74206146--74206275 Score: 251
Period size: 32 Copynumber: 4.1 Consensus size: 32
74206136 TCTCTGCCAC
*
74206146 CACATCTTTATCGAAACGGTTTCAAGTTAAAA
1 CACATCTTTATCGAAACGGTTTCAATTTAAAA
74206178 CACATCTTTATCGAAACGGTTTCAATTTAAAA
1 CACATCTTTATCGAAACGGTTTCAATTTAAAA
74206210 CACATCTTTATCGAAACGGTTTCAATTTAAAA
1 CACATCTTTATCGAAACGGTTTCAATTTAAAA
74206242 CACATCTTTATCGAAACGGTTTCAATTTAAAA
1 CACATCTTTATCGAAACGGTTTCAATTTAAAA
74206274 CA
1 CA
74206276 TAATCTCATA
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 97 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (32 bp):
CACATCTTTATCGAAACGGTTTCAATTTAAAA
Found at i:74206335 original size:90 final size:90
Alignment explanation
Indices: 74206210--74206423 Score: 383
Period size: 90 Copynumber: 2.4 Consensus size: 90
74206200 CAATTTAAAA
* *
74206210 CACATCTTTATCGAAACGGTTTCAATTTAAAACACATCTTTATCGAAACGGTTTCAATTTAAAAC
1 CACATCTTTATCGAAACAGTTTCAAGTTAAAACACATCTTTATCGAAACGGTTTCAATTTAAAAC
74206275 ATAATCTCATAGTGATCTCCGCCAC
66 ATAATCTCATAGTGATCTCCGCCAC
*
74206300 CACATCTTTATTGAAACAGTTTCAAGTTAAAACACATCTTTATCGAAACGGTTTCAATTTAAAAC
1 CACATCTTTATCGAAACAGTTTCAAGTTAAAACACATCTTTATCGAAACGGTTTCAATTTAAAAC
*
74206365 ATAGTCTCATAGTGATCTCCGCCAC
66 ATAATCTCATAGTGATCTCCGCCAC
*
74206390 CACATCTTTATCGAAACTGTTTCAAGTTAAAACA
1 CACATCTTTATCGAAACAGTTTCAAGTTAAAACA
74206424 TGGTCTCATA
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 118 1.00
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.32
Consensus pattern (90 bp):
CACATCTTTATCGAAACAGTTTCAAGTTAAAACACATCTTTATCGAAACGGTTTCAATTTAAAAC
ATAATCTCATAGTGATCTCCGCCAC
Found at i:74206341 original size:32 final size:32
Alignment explanation
Indices: 74206300--74206365 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
74206290 TCTCCGCCAC
*
74206300 CACATCTTTATTGAAACAGTTTCAAGTTAAAA
1 CACATCTTTATCGAAACAGTTTCAAGTTAAAA
* *
74206332 CACATCTTTATCGAAACGGTTTCAATTTAAAA
1 CACATCTTTATCGAAACAGTTTCAAGTTAAAA
74206364 CA
1 CA
74206366 TAGTCTCATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.33
Consensus pattern (32 bp):
CACATCTTTATCGAAACAGTTTCAAGTTAAAA
Found at i:74206422 original size:58 final size:58
Alignment explanation
Indices: 74206332--74206642 Score: 397
Period size: 58 Copynumber: 5.5 Consensus size: 58
74206322 CAAGTTAAAA
74206332 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
1 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
* * * *
74206390 CACATCTTTATCGAAACTGTTTCAAGTTAAAACATGGTCTCATAGTGATATCCGCCAC
1 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
*
74206448 CACATCTTTATTGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
1 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
* ** * * * * * ** *
74206506 CGCATCTTTAAAGAAACAGTTCCAAGTTAAAACATGGTTTCA-A-T--T-T---AAAA
1 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
* *
74206556 CACATCTTTATCGAAACAGTTTCAATTTAAAACATAGTCTCA-AGTGATCTCCACCAC
1 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
74206613 CACATCTTTATCGAAACGGTTTCAATTTAA
1 CACATCTTTATCGAAACGGTTTCAATTTAA
74206643 GACTATTTTC
Statistics
Matches: 215, Mismatches: 31, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
50 37 0.17
51 1 0.00
53 2 0.01
54 2 0.01
56 1 0.00
57 31 0.14
58 141 0.66
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.32
Consensus pattern (58 bp):
CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
Found at i:74206586 original size:50 final size:49
Alignment explanation
Indices: 74206508--74206663 Score: 134
Period size: 50 Copynumber: 3.0 Consensus size: 49
74206498 TCCGCCACCG
** * *
74206508 CATCTTTAAAGAAACAGTTCCAAGTTAAAACATGGTTTCAATTTAAAACA
1 CATCTTTATCGAAACAGTTTCAATTTAAAACAT-GTTTCAATTTAAAACA
* * *
74206558 CATCTTTATCGAAACAGTTTCAATTTAAAACATAGTCTCAAGTGATCTCCACCACCA
1 CATCTTTATCGAAACAGTTTCAATTTAAAACAT-GTTTCAA-T--T-T--A-AAACA
* *
74206615 CATCTTTATCGAAACGGTTTCAATTTAAGACTAT-TTTCAATTTAAAACA
1 CATCTTTATCGAAACAGTTTCAATTTAAAAC-ATGTTTCAATTTAAAACA
74206664 TAGTCTCACA
Statistics
Matches: 85, Mismatches: 13, Indels: 17
0.74 0.11 0.15
Matches are distributed among these distances:
49 3 0.04
50 36 0.42
51 1 0.01
52 1 0.01
53 2 0.02
54 1 0.01
55 1 0.01
56 6 0.07
57 32 0.38
58 2 0.02
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (49 bp):
CATCTTTATCGAAACAGTTTCAATTTAAAACATGTTTCAATTTAAAACA
Found at i:74206697 original size:75 final size:74
Alignment explanation
Indices: 74206575--74206717 Score: 259
Period size: 75 Copynumber: 1.9 Consensus size: 74
74206565 ATCGAAACAG
74206575 TTTCAATTTAAAACATAGTCTCAAGTGATCTCCACCACCACATCTTTATCGAAACGGTTTCAATT
1 TTTCAATTTAAAACATAGTCTCAAGTGATCTCCACCACCACATCTTTATCGAAACGGTTTCAATT
74206640 TAAGACTAT
66 TAAGACTAT
* *
74206649 TTTCAATTTAAAACATAGTCTCACAGTGATCTCCGCCACCACATCTTTATCGAAACGGTTTCAGT
1 TTTCAATTTAAAACATAGTCTCA-AGTGATCTCCACCACCACATCTTTATCGAAACGGTTTCAAT
74206714 TTAA
65 TTAA
74206718 AATATAGTCT
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
74 23 0.35
75 43 0.65
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34
Consensus pattern (74 bp):
TTTCAATTTAAAACATAGTCTCAAGTGATCTCCACCACCACATCTTTATCGAAACGGTTTCAATT
TAAGACTAT
Found at i:74206739 original size:58 final size:58
Alignment explanation
Indices: 74206649--74206767 Score: 175
Period size: 58 Copynumber: 2.1 Consensus size: 58
74206639 TTAAGACTAT
*
74206649 TTTCAATTTAAAACATAGTCTCACAGTGATCTCCGCCACCACATCTTTATCGAAACGG
1 TTTCAATTTAAAACATAGTCTCACAGTGATCTCCGCCACCACATCTTTATCAAAACGG
* * ** * *
74206707 TTTCAGTTTAAAATATAGTCTCATTGTGATCTCTGCCACCACATCTTTATCAAAATGG
1 TTTCAATTTAAAACATAGTCTCACAGTGATCTCCGCCACCACATCTTTATCAAAACGG
74206765 TTT
1 TTT
74206768 TGACCAGACG
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (58 bp):
TTTCAATTTAAAACATAGTCTCACAGTGATCTCCGCCACCACATCTTTATCAAAACGG
Found at i:74210736 original size:29 final size:28
Alignment explanation
Indices: 74210669--74210737 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
74210659 ATGGAATCAT
*
74210669 TTTATAAAAAAACGGCCCATTTCCATAA
1 TTTATAAAAAAACAGCCCATTTCCATAA
* ** * *
74210697 TTCTTTAAAAATTCAGCCTATTTTCATAA
1 TT-TATAAAAAAACAGCCCATTTCCATAA
74210726 TTTATAAAAAAA
1 TTTATAAAAAAA
74210738 GGCATTATTT
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
28 9 0.29
29 22 0.71
ACGTcount: A:0.43, C:0.16, G:0.04, T:0.36
Consensus pattern (28 bp):
TTTATAAAAAAACAGCCCATTTCCATAA
Found at i:74217006 original size:17 final size:17
Alignment explanation
Indices: 74216959--74217011 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
74216949 TTTATAAAAA
*
74216959 TAAATAAAATTTAATTT
1 TAAAAAAAATTTAATTT
* * *
74216976 TTAAAAATAGTTAATTT
1 TAAAAAAAATTTAATTT
74216993 TAAAAAAAATTTAAATTT
1 TAAAAAAAATTT-AATTT
74217011 T
1 T
74217012 TTTTAAAAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 22 0.79
18 6 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
TAAAAAAAATTTAATTT
Done.