Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 24 of 250
Found at i:6993415 original size:17 final size:16
Alignment explanation
Indices: 6993370--6993417 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
6993360 TTTAAATTTT
6993370 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
6993387 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
6993401 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
6993418 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:6993489 original size:18 final size:17
Alignment explanation
Indices: 6993458--6993492 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6993448 ATTATTAAGA
6993458 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
6993475 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
6993493 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:6993558 original size:129 final size:130
Alignment explanation
Indices: 6993405--6993638 Score: 425
Period size: 129 Copynumber: 1.8 Consensus size: 130
6993395 ATATTAGTTA
*
6993405 TAATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* *
6993470 TATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
*
6993535 TAATAATA-ATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
6993599 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
6993639 TAAATATGAT
Statistics
Matches: 100, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
129 93 0.93
130 7 0.07
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (130 bp):
TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
Found at i:6993615 original size:18 final size:17
Alignment explanation
Indices: 6993587--6993621 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6993577 ATTATTAAGA
*
6993587 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
6993604 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
6993622 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:6993734 original size:147 final size:149
Alignment explanation
Indices: 6993575--6993849 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
6993565 ATAAGAATAT
*
6993575 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
6993640 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
6993703 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
6993722 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
6993787 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
6993850 CAATAATCAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 91 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:6993762 original size:18 final size:17
Alignment explanation
Indices: 6993734--6993768 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6993724 ATTATTAAGA
*
6993734 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
6993751 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
6993769 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:6993979 original size:44 final size:45
Alignment explanation
Indices: 6993930--6994024 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
6993920 TTACACCTCT
* *
6993930 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
6993974 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
6994019 ATTACA
1 ATTACA
6994025 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:6994024 original size:16 final size:16
Alignment explanation
Indices: 6994005--6994072 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
6993995 GATTTGCTAT
* *
6994005 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
6994021 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
6994037 TACACCTCTAACCCAA
1 TACACCTCTAATCCAA
6994053 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
6994069 TACA
1 TACA
6994073 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:6994777 original size:7 final size:7
Alignment explanation
Indices: 6994766--6994812 Score: 67
Period size: 7 Copynumber: 6.7 Consensus size: 7
6994756 TATTTTTCAG
6994766 GAAAAAA
1 GAAAAAA
*
6994773 TAAAAAA
1 GAAAAAA
*
6994780 TAAAAAA
1 GAAAAAA
6994787 GAAAAAA
1 GAAAAAA
6994794 GAAAAAA
1 GAAAAAA
*
6994801 GAAAGAA
1 GAAAAAA
6994808 GAAAA
1 GAAAA
6994813 GTCATTCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (7 bp):
GAAAAAA
Found at i:6995069 original size:24 final size:25
Alignment explanation
Indices: 6995042--6995115 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
6995032 ATAAATATTT
6995042 AATTAATTTTTAAAATTTTAA-AAA
1 AATTAATTTTTAAAATTTTAATAAA
*
6995066 AATT-ATTTTTAATAATTTTAATAAT
1 AATTAATTTTTAA-AATTTTAATAAA
** **
6995091 TTTTAATTTTTAAAAAATTAATAAA
1 AATTAATTTTTAAAATTTTAATAAA
6995116 TTAATTGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
23 8 0.20
24 12 0.29
25 13 0.32
26 8 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
AATTAATTTTTAAAATTTTAATAAA
Found at i:6995120 original size:42 final size:42
Alignment explanation
Indices: 6995039--6995120 Score: 96
Period size: 40 Copynumber: 1.9 Consensus size: 42
6995029 GACATAAATA
**
6995039 TTTAATTAATTTTTAAAATTTTAAAAAAATTATTTTTAATAAT
1 TTTAATTAATTTTT-AAATTTTAAAAAAATTATAATTAATAAT
*
6995082 TTTAA-TAATTTTT-AATTTTTAAAAAATTAATAAATTAAT
1 TTTAATTAATTTTTAAATTTTAAAAAAATT-AT-AATTAAT
6995121 TGAATGTTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
40 14 0.41
41 2 0.06
42 13 0.38
43 5 0.15
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (42 bp):
TTTAATTAATTTTTAAATTTTAAAAAAATTATAATTAATAAT
Found at i:6996794 original size:21 final size:20
Alignment explanation
Indices: 6996757--6996798 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
6996747 CTGGTGTCAT
6996757 ATTCGTTTCCCCCAACAATG
1 ATTCGTTTCCCCCAACAATG
* *
6996777 ATTCGATTTCTCCGAACAATG
1 ATTCG-TTTCCCCCAACAATG
6996798 A
1 A
6996799 ATGAGAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.31
Consensus pattern (20 bp):
ATTCGTTTCCCCCAACAATG
Found at i:7012355 original size:39 final size:39
Alignment explanation
Indices: 7012311--7012543 Score: 360
Period size: 39 Copynumber: 6.0 Consensus size: 39
7012301 ATTATATTAT
*
7012311 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
7012350 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * * *
7012389 CAGCACGAAGCCTGCGGGACCTTGGCCCGGATATATTTC
1 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
7012428 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTC
7012467 CAGCA-AGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACA-AAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
7012506 CAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT
1 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
7012544 TCAGTGTCTT
Statistics
Matches: 179, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 178 0.99
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.21
Consensus pattern (39 bp):
CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:7016554 original size:11 final size:11
Alignment explanation
Indices: 7016538--7016568 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
7016528 GCTTTATTTC
7016538 ATTTTATTTTT
1 ATTTTATTTTT
7016549 ATTTTATTTTT
1 ATTTTATTTTT
7016560 A-TTTATTTT
1 ATTTTATTTT
7016569 CATAAATTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.40
11 12 0.60
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
ATTTTATTTTT
Found at i:7036054 original size:57 final size:57
Alignment explanation
Indices: 7035988--7036102 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
7035978 TAGAGTTTTT
7035988 TTTTGTTAATAAGATAGTTTGTATGCAAGTATGAATGATGATTTTATTGAGTGAAAG
1 TTTTGTTAATAAGATAGTTTGTATGCAAGTATGAATGATGATTTTATTGAGTGAAAG
7036045 TTTTGTTAATAAGATAGTTTGTATGCAAGTATGAATGATGATTTTATTGAGTGAAAG
1 TTTTGTTAATAAGATAGTTTGTATGCAAGTATGAATGATGATTTTATTGAGTGAAAG
7036102 T
1 T
7036103 ATGTTATCAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.33, C:0.02, G:0.23, T:0.43
Consensus pattern (57 bp):
TTTTGTTAATAAGATAGTTTGTATGCAAGTATGAATGATGATTTTATTGAGTGAAAG
Found at i:7040022 original size:31 final size:32
Alignment explanation
Indices: 7039981--7040064 Score: 107
Period size: 31 Copynumber: 2.7 Consensus size: 32
7039971 AACCCTTCCT
*
7039981 GCATTAAAATCCAACCAAAAACAACAAATATA
1 GCATAAAAATCCAACCAAAAACAACAAATATA
* * *
7040013 GCAT-GAAATCCAACCAAAAACAGCAAATGTA
1 GCATAAAAATCCAACCAAAAACAACAAATATA
* *
7040044 GTATAAAAATACAACCAAAAA
1 GCATAAAAATCCAACCAAAAA
7040065 TATTAAATCT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 27 0.60
32 18 0.40
ACGTcount: A:0.58, C:0.20, G:0.07, T:0.14
Consensus pattern (32 bp):
GCATAAAAATCCAACCAAAAACAACAAATATA
Found at i:7045738 original size:9 final size:9
Alignment explanation
Indices: 7045724--7045805 Score: 67
Period size: 9 Copynumber: 9.1 Consensus size: 9
7045714 TATGTATTAC
*
7045724 GTAAGTTAA
1 GTAAGTTAT
*
7045733 GTAAGTTTT
1 GTAAGTTAT
7045742 GTAAGTTAT
1 GTAAGTTAT
*
7045751 GTAAGTCAT
1 GTAAGTTAT
* *
7045760 GATATGATAT
1 G-TAAGTTAT
* *
7045770 -AAATTTAT
1 GTAAGTTAT
*
7045778 GTAAGGTAT
1 GTAAGTTAT
7045787 GTAAGTTAT
1 GTAAGTTAT
*
7045796 GTAAATTAT
1 GTAAGTTAT
7045805 G
1 G
7045806 ATATGAAATA
Statistics
Matches: 55, Mismatches: 16, Indels: 4
0.73 0.21 0.05
Matches are distributed among these distances:
8 4 0.07
9 46 0.84
10 5 0.09
ACGTcount: A:0.37, C:0.01, G:0.21, T:0.41
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:7045853 original size:43 final size:43
Alignment explanation
Indices: 7045741--7045895 Score: 211
Period size: 43 Copynumber: 3.6 Consensus size: 43
7045731 AAGTAAGTTT
* * *
7045741 TGTAAGTTATGTAAGTCATGATATGATATAAATTTATGTAAGGTA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGT-A-TTA
* *
7045786 TGTAAGTTATGTAAATTATGATATGAAATATATTTATGTATTA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTA
* * *
7045829 CGCAAGTTATGTAAGTTATTATATGATATATATTTATGTATTA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTA
*
7045872 TGTAAGTTATGTAAGCTATGATAT
1 TGTAAGTTATGTAAGTTATGATAT
7045896 CATGTATTTA
Statistics
Matches: 96, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
43 60 0.62
44 1 0.01
45 35 0.36
ACGTcount: A:0.37, C:0.03, G:0.17, T:0.44
Consensus pattern (43 bp):
TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTA
Found at i:7046098 original size:29 final size:28
Alignment explanation
Indices: 7046064--7046130 Score: 116
Period size: 29 Copynumber: 2.3 Consensus size: 28
7046054 ATCACCTAGA
7046064 AAAAAATTATTTTAATTAAATAATATTT
1 AAAAAATTATTTTAATTAAATAATATTT
7046092 ATAAAAATTATTTTAATTAAATAATATTT
1 A-AAAAATTATTTTAATTAAATAATATTT
7046121 AAATAAATTA
1 AAA-AAATTA
7046131 ATCCAAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
AAAAAATTATTTTAATTAAATAATATTT
Found at i:7046099 original size:15 final size:16
Alignment explanation
Indices: 7046071--7046128 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
7046061 AGAAAAAAAT
7046071 TATTT-TAATTAAATAA
1 TATTTATAA-TAAATAA
7046087 TATTTATAA-AAAT--
1 TATTTATAATAAATAA
7046100 TATTT-TAATTAAATAA
1 TATTTATAA-TAAATAA
7046116 TATTTA-AATAAAT
1 TATTTATAATAAAT
7046129 TAATCCAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
12 3 0.08
13 5 0.14
14 4 0.11
15 9 0.25
16 12 0.33
17 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTATAATAAATAA
Found at i:7046119 original size:16 final size:16
Alignment explanation
Indices: 7046071--7046120 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
7046061 AGAAAAAAAT
7046071 TATTTTAATTAAATAA
1 TATTTTAATTAAATAA
7046087 TA-TTT-A-TAAA-AA
1 TATTTTAATTAAATAA
7046099 TTATTTTAATTAAATAA
1 -TATTTTAATTAAATAA
7046116 TATTT
1 TATTT
7046121 AAATAAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
12 2 0.07
13 6 0.21
14 4 0.14
15 4 0.14
16 11 0.38
17 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TATTTTAATTAAATAA
Found at i:7046239 original size:192 final size:197
Alignment explanation
Indices: 7045905--7046444 Score: 889
Period size: 192 Copynumber: 2.7 Consensus size: 197
7045895 TCATGTATTT
7045905 AATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATAT-ATTTTAAAAAATTGTGT
1 AATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTT-AAAAATTGTGT
* *
7045969 ATAAAAAAGTCGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTTGAAAAAAATAATAAAAA
65 ATAAAAAAGTCGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTTGGAAAAAATAATAAAAT
7046034 AAAATTTGACGATGTGGAAAATCACCTAGAAAAAAATTATTTTAATTAAATAATA-TT-T-A-TA
130 AAAATTTGACGATGTGGAAAATCACCTAGAAAAAAATTATTTTAATTAAATAATATTTATAATTA
7046095 A-A
195 ACA
*
7046097 AATTATTTTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTTAAAAATTGTGTA
1 AATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTTAAAAATTGTGTA
7046162 TAAAAAAGTCGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTTGGAAAAAA-AATAATAAT
66 TAAAAAAGTCGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTTGGAAAAAATAATAA-AAT
*
7046226 AAAATTTGACGATGTGGAAAATCACCTGGAAAAAAATTATTTTAATTAAATAATATTTAAATAAA
130 AAAATTTGACGATGTGGAAAATCACCTAGAAAAAAATTATTTTAATTAAATAATATTT--AT-AA
7046291 TTAATCCA
192 TTAA--CA
*
7046299 AATTATATTAATTAATTAATATTTAAATAAATTAATCCAAATTATATAATTTTAAAAATTGTGTA
1 AATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTTAAAAATTGTGTA
*
7046364 TAAAAAAGTCGAAAACCGTATAAGATTAAATGTCAACTTTGTTCCTTGGAAAAAAATAATAAAAA
66 TAAAAAAGTCGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTTGG-AAAAAATAAT-AAAA
7046429 TAAAA-TTGACGATGTG
129 TAAAATTTGACGATGTG
7046445 AAGAATAAGT
Statistics
Matches: 326, Mismatches: 7, Indels: 19
0.93 0.02 0.05
Matches are distributed among these distances:
191 5 0.02
192 168 0.52
193 7 0.02
196 1 0.00
198 1 0.00
199 3 0.01
202 112 0.34
203 17 0.05
204 10 0.03
205 2 0.01
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (197 bp):
AATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTTAAAAATTGTGTA
TAAAAAAGTCGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCTTGGAAAAAATAATAAAATA
AAATTTGACGATGTGGAAAATCACCTAGAAAAAAATTATTTTAATTAAATAATATTTATAATTAA
CA
Found at i:7046313 original size:19 final size:19
Alignment explanation
Indices: 7046289--7046349 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 19
7046279 TATTTAAATA
7046289 AATTAATCCAAATTATATT
1 AATTAATCCAAATTATATT
* * *
7046308 AATTAAT-TAATATTTAAATA
1 AATTAATCCAA-A-TTATATT
7046328 AATTAATCCAAATTATA-T
1 AATTAATCCAAATTATATT
7046346 AATT
1 AATT
7046350 TTAAAAATTG
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
18 6 0.18
19 12 0.36
20 13 0.39
21 2 0.06
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.43
Consensus pattern (19 bp):
AATTAATCCAAATTATATT
Found at i:7046313 original size:39 final size:39
Alignment explanation
Indices: 7046259--7046349 Score: 157
Period size: 39 Copynumber: 2.4 Consensus size: 39
7046249 ACCTGGAAAA
*
7046259 AAATTATTTTAATTAAATAATATTTAAATAAATTAATCC
1 AAATTATATTAATTAAATAATATTTAAATAAATTAATCC
*
7046298 AAATTATATTAATTAATTAATATTTAAATAAATTAATCC
1 AAATTATATTAATTAAATAATATTTAAATAAATTAATCC
7046337 AAATTATA-TAATT
1 AAATTATATTAATT
7046350 TTAAAAATTG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 5 0.10
39 45 0.90
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (39 bp):
AAATTATATTAATTAAATAATATTTAAATAAATTAATCC
Found at i:7046334 original size:20 final size:20
Alignment explanation
Indices: 7046269--7046334 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
7046259 AAATTATTTT
*
7046269 AATTAAATAATATTTAAATA
1 AATTAATTAATATTTAAATA
* * *
7046289 AATTAATCCAA-A-TTATATT
1 AATTAAT-TAATATTTAAATA
7046308 AATTAATTAATATTTAAATA
1 AATTAATTAATATTTAAATA
7046328 AATTAAT
1 AATTAAT
7046335 CCAAATTATA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
18 2 0.06
19 13 0.36
20 19 0.53
21 2 0.06
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
AATTAATTAATATTTAAATA
Found at i:7047918 original size:22 final size:21
Alignment explanation
Indices: 7047888--7047953 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
7047878 TACAAATTAA
7047888 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
7047910 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
7047931 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
7047950 ATCT
1 ATCT
7047954 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:7047940 original size:19 final size:19
Alignment explanation
Indices: 7047905--7047983 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
7047895 AGATTACAAG
7047905 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
7047926 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
7047945 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
7047962 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
7047981 ATC
1 ATC
7047984 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:7047947 original size:14 final size:15
Alignment explanation
Indices: 7047927--7047983 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
7047917 AGATTGCATA
7047927 TCATATCTAAGATTG
1 TCATATCTAAGATTG
7047942 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
7047961 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
7047978 -CATATC
1 TCATATC
7047984 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:7047969 original size:36 final size:39
Alignment explanation
Indices: 7047905--7047983 Score: 128
Period size: 36 Copynumber: 2.1 Consensus size: 39
7047895 AGATTACAAG
7047905 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAGATTGCAT
7047945 ATCATATC-T-AAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
7047981 ATC
1 ATC
7047984 CTTAAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
39 1 0.03
40 8 0.21
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
Found at i:7050390 original size:75 final size:74
Alignment explanation
Indices: 7050289--7050527 Score: 261
Period size: 74 Copynumber: 3.2 Consensus size: 74
7050279 TCTGCAGCAT
* * ** * *
7050289 TTTTGTTGAAAACGCCAGTAAAAACAATGATAAAAACGACGACCTTTTGCTCTCTTAATACATAT
1 TTTTGTCGAAAATGCCACAAAAAACAAGGATAAAAACGACGACATTTTGCTCTCTTAATACATA-
*
7050354 TTTACGGC-G
65 TTTACGGCAC
* * * **
7050363 TTTATGTCGAAAATGCCACAAAAAACAAGGATAAAAATGACGTCATTTTCCTCTCACAATACATA
1 TTT-TGTCGAAAATGCCACAAAAAACAAGGATAAAAACGACGACATTTTGCTCTCTTAATACATA
*
7050428 TTTGCGGCAC
65 TTTACGGCAC
* *
7050438 TTTTGTCGAAAATGCCACTAAAAACAAGGATAAAAACG-CGGACATTTTGCACTCTTAATACA-A
1 TTTTGTCGAAAATGCCACAAAAAACAAGGATAAAAACGAC-GACATTTTGCTCTCTTAATACATA
*
7050501 CTTAGCGGCA-
65 TTTA-CGGCAC
*
7050511 TTTTTTCGAAAATGCCA
1 TTTTGTCGAAAATGCCA
7050528 GTAATGCACA
Statistics
Matches: 138, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
73 20 0.14
74 65 0.47
75 53 0.38
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (74 bp):
TTTTGTCGAAAATGCCACAAAAAACAAGGATAAAAACGACGACATTTTGCTCTCTTAATACATAT
TTACGGCAC
Found at i:7050630 original size:114 final size:111
Alignment explanation
Indices: 7050451--7050745 Score: 261
Period size: 115 Copynumber: 2.6 Consensus size: 111
7050441 TGTCGAAAAT
* ** *
7050451 GCCACTAAAAACAAGGATAAAAACG-CGGACATTTTGCACTCTTAATACAACTTAGCGGCAT-TT
1 GCCACTAAAAACAAGGATAAAAACGAC-GACATTTTGCACTCTTAATGCATTTTTGCGG--TGTT
* * * * **
7050514 TTTCGAAAATGCCAGTAATGCACAACCTTTTGCGACATTTTTTGTTGAAAC
63 TTTCGAAAAT-CCAGTAAAGAACAACATTTTGCGACA-TTTCTGAGGAAAC
* * * *
7050565 GCCACTAAAAACAAGGATAAAAAATGACAACATTTTGTACTCTTAATGCATTTTTGTGGTGTTTT
1 GCCACTAAAAACAAGGAT-AAAAACGACGACATTTTGCACTCTTAATGCATTTTTGCGGTG--TT
* * * * *
7050630 TGTTCTAAACTCCGGTAAAGAACAACATTTTGTGGCATTTCTGAGGAAAC
63 T-TTCGAAAATCCAGTAAAGAACAACATTTTGCGACATTTCTGAGGAAAC
* * * * * *
7050680 ACCACTAAAAACAAGCATGGAAAACGACGACGTTTTGCACTCTTAATGCATTTTTGGGGCGTTTT
1 GCCACTAAAAACAAGGAT-AAAAACGACGACATTTTGCACTCTTAATGCATTTTTGCGGTGTTTT
7050745 T
65 T
7050746 TATTGAAAAC
Statistics
Matches: 146, Mismatches: 29, Indels: 14
0.77 0.15 0.07
Matches are distributed among these distances:
112 2 0.01
113 4 0.03
114 18 0.12
115 91 0.62
116 24 0.16
117 7 0.05
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (111 bp):
GCCACTAAAAACAAGGATAAAAACGACGACATTTTGCACTCTTAATGCATTTTTGCGGTGTTTTT
CGAAAATCCAGTAAAGAACAACATTTTGCGACATTTCTGAGGAAAC
Found at i:7050679 original size:115 final size:116
Alignment explanation
Indices: 7050560--7050771 Score: 291
Period size: 115 Copynumber: 1.8 Consensus size: 116
7050550 ATTTTTTGTT
* * * * * *
7050560 GAAACGCCACTAAAAACAAGGATAAAAAATGACAACATTTTGTACTCTTAATGCATTTTTGTGGT
1 GAAACACCACTAAAAACAAGCATAAAAAACGACAACATTTTGCACTCTTAATGCATTTTTGGGGC
* * *
7050625 G-TTTTTGTTCTAAACTCCGGTAAAGAACAACATTTTGTGGCATTTCTGAG
66 GTTTTTTATTCAAAACGCCGGTAAAGAACAACATTTTGTGGCATTTCTGAG
** * *
7050675 GAAACACCACTAAAAACAAGCATGGAAAACGACGACGTTTTGCACTCTTAATGCATTTTTGGGGC
1 GAAACACCACTAAAAACAAGCATAAAAAACGACAACATTTTGCACTCTTAATGCATTTTTGGGGC
*
7050740 GTTTTTTATTGAAAACGCCGGTAAAGAACAAC
66 GTTTTTTATTCAAAACGCCGGTAAAGAACAAC
7050772 CTGTTGCACT
Statistics
Matches: 82, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
115 56 0.68
116 26 0.32
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29
Consensus pattern (116 bp):
GAAACACCACTAAAAACAAGCATAAAAAACGACAACATTTTGCACTCTTAATGCATTTTTGGGGC
GTTTTTTATTCAAAACGCCGGTAAAGAACAACATTTTGTGGCATTTCTGAG
Found at i:7050885 original size:7 final size:7
Alignment explanation
Indices: 7050873--7050934 Score: 54
Period size: 7 Copynumber: 8.9 Consensus size: 7
7050863 CATTGGTAAT
7050873 CCTAAAC
1 CCTAAAC
7050880 CCTAAAC
1 CCTAAAC
*
7050887 ACT-AAC
1 CCTAAAC
*
7050893 CCTTAAC
1 CCTAAAC
*
7050900 CCTTAAC
1 CCTAAAC
* *
7050907 TCTTAAC
1 CCTAAAC
7050914 CCTTAAAC
1 CC-TAAAC
*
7050922 CCCAAAC
1 CCTAAAC
7050929 CCTAAA
1 CCTAAA
7050935 TCCCGCTAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
6 5 0.11
7 35 0.76
8 6 0.13
ACGTcount: A:0.39, C:0.40, G:0.00, T:0.21
Consensus pattern (7 bp):
CCTAAAC
Found at i:7051140 original size:7 final size:7
Alignment explanation
Indices: 7051130--7051253 Score: 74
Period size: 7 Copynumber: 17.9 Consensus size: 7
7051120 CCTCTATCTT
7051130 CTAAACC
1 CTAAACC
**
7051137 CTAAATT
1 CTAAACC
*
7051144 ATAAACC
1 CTAAACC
*
7051151 ATAAACCC
1 CTAAA-CC
7051159 CT-AACC
1 CTAAACC
*
7051165 CTAAACT
1 CTAAACC
*
7051172 TTAAACC
1 CTAAACC
7051179 CATAAA--
1 C-TAAACC
*
7051185 TTAAACC
1 CTAAACC
7051192 CTAAACC
1 CTAAACC
* *
7051199 ATATACC
1 CTAAACC
*
7051206 CTAAACA
1 CTAAACC
*
7051213 TTAAACC
1 CTAAACC
*
7051220 CTAAATC
1 CTAAACC
* *
7051227 ATATACC
1 CTAAACC
7051234 CTAAACC
1 CTAAACC
*
7051241 ATAAACC
1 CTAAACC
7051248 CTAAAC
1 CTAAAC
7051254 TATAATGATA
Statistics
Matches: 84, Mismatches: 28, Indels: 10
0.69 0.23 0.08
Matches are distributed among these distances:
5 4 0.05
6 4 0.05
7 69 0.82
8 7 0.08
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:7051150 original size:14 final size:14
Alignment explanation
Indices: 7051131--7051258 Score: 102
Period size: 14 Copynumber: 9.2 Consensus size: 14
7051121 CTCTATCTTC
**
7051131 TAAACCCTAAATTA
1 TAAACCCTAAACCA
* *
7051145 TAAACCATAAACCCC
1 TAAACCCTAAA-CCA
**
7051160 T-AACCCTAAACTT
1 TAAACCCTAAACCA
*
7051173 TAAACCCATAAA--T
1 TAAACCC-TAAACCA
7051186 TAAACCCTAAACCA
1 TAAACCCTAAACCA
*
7051200 TATACCCTAAA-CA
1 TAAACCCTAAACCA
*
7051213 TTAAACCCTAAATCA
1 -TAAACCCTAAACCA
*
7051228 TATACCCTAAACCA
1 TAAACCCTAAACCA
*
7051242 TAAACCCTAAACTA
1 TAAACCCTAAACCA
7051256 TAA
1 TAA
7051259 TGATAATTAA
Statistics
Matches: 93, Mismatches: 14, Indels: 14
0.77 0.12 0.12
Matches are distributed among these distances:
12 4 0.04
13 12 0.13
14 70 0.75
15 7 0.08
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:7051224 original size:28 final size:29
Alignment explanation
Indices: 7051184--7051253 Score: 117
Period size: 28 Copynumber: 2.5 Consensus size: 29
7051174 AAACCCATAA
7051184 ATTAAACCCTAAACCATATACCCTAAA-C
1 ATTAAACCCTAAACCATATACCCTAAACC
*
7051212 ATTAAACCCTAAATCATATACCCTAAACC
1 ATTAAACCCTAAACCATATACCCTAAACC
7051241 A-TAAACCCTAAAC
1 ATTAAACCCTAAAC
7051254 TATAATGATA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.21
Consensus pattern (29 bp):
ATTAAACCCTAAACCATATACCCTAAACC
Found at i:7051888 original size:194 final size:195
Alignment explanation
Indices: 7051545--7051907 Score: 522
Period size: 194 Copynumber: 1.9 Consensus size: 195
7051535 TTTAAAAAGT
* * *
7051545 GCCGCTAATGCTCGATCTATAGCGGCGTTTTCCAAAAAGCGTCATTAATGCAACTAAAGCTCAAC
1 GCCGCTAATGCTCGATCTATAGCAGCGTTTTCCAAAAAGCGCCACTAATGCAACTAAAGCTCAAC
* * *
7051610 ATAAAACGATGGCGTTGTGCTTAATTTTTTGCAGCGTTTTTTGAAAAAGCGCCGCTAGTGGGTAG
66 ATAAAACAACGGCGTTGTGCTTAATTTTTTGCAGCGTTTTTTGAAAAAGCGCCGCTAATGGGTAG
*
7051675 ACCTATAGCGGCATTTTTAAAAAGCGCCG-TCAATGCTCAGTAATAGCGGTGTTTTTCTACAAAC
131 ACCTATAGCGGCATTTTTAAAAAGCGCCGCTAAATGCTCAGTAATAGCGGTGTTTTTCTACAAAC
* *
7051739 GCCGCTAATGCTCGATCTATAGCAGCGTTTTCCAAAAAGTGCCGCTAATGTC-ACTAAAGCTCAA
1 GCCGCTAATGCTCGATCTATAGCAGCGTTTTCCAAAAAGCGCCACTAATG-CAACTAAAGCTCAA
* * *
7051803 CATAAAACAACGGCGTTGTGC-TAACTTTTTTTGCGGCG-TTTTTGAACAAGTGCCGCTAAT-GG
65 CATAAAACAACGGCGTTGTGCTTAA--TTTTTTGCAGCGTTTTTTGAAAAAGCGCCGCTAATGGG
*
7051865 TCGACCTAT-GCGGCATTTTTTTAAAAAGCGCCGCTAAATGCTC
128 TAGACCTATAGCGGCA--TTTTTAAAAAGCGCCGCTAAATGCTC
7051908 GATCTATAGC
Statistics
Matches: 150, Mismatches: 13, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
192 6 0.04
193 13 0.09
194 111 0.74
195 20 0.13
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (195 bp):
GCCGCTAATGCTCGATCTATAGCAGCGTTTTCCAAAAAGCGCCACTAATGCAACTAAAGCTCAAC
ATAAAACAACGGCGTTGTGCTTAATTTTTTGCAGCGTTTTTTGAAAAAGCGCCGCTAATGGGTAG
ACCTATAGCGGCATTTTTAAAAAGCGCCGCTAAATGCTCAGTAATAGCGGTGTTTTTCTACAAAC
Found at i:7051898 original size:40 final size:40
Alignment explanation
Indices: 7051854--7051954 Score: 96
Period size: 41 Copynumber: 2.5 Consensus size: 40
7051844 TTGAACAAGT
* * *
7051854 GCCGCTAATGGTCGACCTAT-GCGGCATTTTTTTAAAAAGC
1 GCCGCTAATGGTCGACCTATAGCGGAAATTTTAT-AAAAGC
* * *
7051894 GCCGCTAAATGCTCGATCTATAGCGGAAATTTTATAGAAGC
1 GCCGCT-AATGGTCGACCTATAGCGGAAATTTTATAAAAGC
* * *
7051935 ACCGCTAATTGTCAACCTAT
1 GCCGCTAATGGTCGACCTAT
7051955 TCTGCTGTAG
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
40 16 0.33
41 22 0.46
42 10 0.21
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (40 bp):
GCCGCTAATGGTCGACCTATAGCGGAAATTTTATAAAAGC
Found at i:7052948 original size:33 final size:34
Alignment explanation
Indices: 7052853--7052949 Score: 85
Period size: 33 Copynumber: 2.9 Consensus size: 34
7052843 TTAATATTTT
* *
7052853 AATATATGAAATATAAATTTTAAATATTT-GTAAGC
1 AATATAT-AAAT-TATATTTTAAATATTTAATAAGC
* * *
7052888 AATAAATATTAATTAT-TTATAAA-ATTTAATTAG-
1 AAT--ATATAAATTATATTTTAAATATTTAATAAGC
7052921 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
7052950 ATATAACCAT
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 13 0.26
34 9 0.18
35 5 0.10
36 3 0.06
37 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (34 bp):
AATATATAAATTATATTTTAAATATTTAATAAGC
Found at i:7056657 original size:21 final size:22
Alignment explanation
Indices: 7056614--7056659 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
7056604 TTCATATGAT
7056614 TGAATAAATAAATATTTTAATA
1 TGAATAAATAAATATTTTAATA
* * *
7056636 TGAATAATTTAAT-TTTTTATA
1 TGAATAAATAAATATTTTAATA
7056657 TGA
1 TGA
7056660 TTGTCTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.48
Consensus pattern (22 bp):
TGAATAAATAAATATTTTAATA
Found at i:7057280 original size:4 final size:4
Alignment explanation
Indices: 7057273--7057330 Score: 71
Period size: 4 Copynumber: 13.8 Consensus size: 4
7057263 TTTAAGGTAA
* *
7057273 AATT AATT AGTTT AATT AACTT AATTT AATT AATT AACT AATT AATT AATT
1 AATT AATT A-ATT AATT AA-TT AA-TT AATT AATT AATT AATT AATT AATT
7057324 AATT AAT
1 AATT AAT
7057331 ATTTTTGGGT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
4 36 0.77
5 11 0.23
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:7057724 original size:14 final size:15
Alignment explanation
Indices: 7057675--7057724 Score: 50
Period size: 14 Copynumber: 3.3 Consensus size: 15
7057665 TGGAAAAATA
*
7057675 AATTTTAATTTACTTAT
1 AATTTT-ATTT-CATAT
7057692 AATTTTATTTCAT-T
1 AATTTTATTTCATAT
*
7057706 TATTTT-TTTCATAT
1 AATTTTATTTCATAT
7057720 AATTT
1 AATTT
7057725 GTAACGCCCC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 6 0.21
14 11 0.38
15 2 0.07
16 4 0.14
17 6 0.21
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (15 bp):
AATTTTATTTCATAT
Found at i:7058141 original size:23 final size:23
Alignment explanation
Indices: 7058115--7058159 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
7058105 TTCCTTCCTT
* *
7058115 TTTTCGTTCTTTTTTCTTTTTTC
1 TTTTCCTTCCTTTTTCTTTTTTC
7058138 TTTTCCTTCCTTTTTCTTTTTT
1 TTTTCCTTCCTTTTTCTTTTTT
7058160 TTCTTTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (23 bp):
TTTTCCTTCCTTTTTCTTTTTTC
Found at i:7058167 original size:7 final size:7
Alignment explanation
Indices: 7058121--7058159 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
7058111 CCTTTTTTCG
7058121 TTCTTTT
1 TTCTTTT
7058128 TTCTTTT
1 TTCTTTT
7058135 TTCTTTT
1 TTCTTTT
*
7058142 CCTTCCTTT
1 --TTCTTTT
7058151 TTCTTTT
1 TTCTTTT
7058158 TT
1 TT
7058160 TTCTTTTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 22 0.79
9 6 0.21
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (7 bp):
TTCTTTT
Found at i:7058825 original size:63 final size:62
Alignment explanation
Indices: 7058718--7058873 Score: 172
Period size: 63 Copynumber: 2.5 Consensus size: 62
7058708 TGTGTTAGAT
* * * *
7058718 CGTGTGACAGGCCATGTGACTCATTGTTTATCATTAAGGACCACAC-GGACCAGAGACACAG-G
1 CGTGTGTCAGGCCATGTGACTCACTATTTATCATTAAAGACCACACAGG-CCAGAGACA-AGAG
* * *
7058780 CGTGTGTCTAGGCCATGTGACTCACTATTTGTCATTAAAGACCACACAGGCCAGAGATATGAG
1 CGTGTGTC-AGGCCATGTGACTCACTATTTATCATTAAAGACCACACAGGCCAGAGACAAGAG
* * *
7058843 CGTGTGTCCAGGTCGTGTGACCCACTATTTA
1 CGTGTGT-CAGGCCATGTGACTCACTATTTA
7058874 CGATTTAGGA
Statistics
Matches: 79, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
62 8 0.10
63 68 0.86
64 3 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (62 bp):
CGTGTGTCAGGCCATGTGACTCACTATTTATCATTAAAGACCACACAGGCCAGAGACAAGAG
Found at i:7077252 original size:66 final size:65
Alignment explanation
Indices: 7077141--7077270 Score: 197
Period size: 66 Copynumber: 2.0 Consensus size: 65
7077131 GATAGTAAAA
* *
7077141 AGTTCATATACCATAAACCATATTATCAACCAATTTGGTGCAAACAAAAACAAAAATCATAATGT
1 AGTTCATATACCATAAACCATATTATCAACCAATGTGGTGCAAACAAAAA-AAAAACCATAATGT
7077206 C
65 C
* * * *
7077207 AGTTCCTATACCATAAACCATATTATCAGCCAATGTGGTGTAAACAAAAAAAAAACCATCATGT
1 AGTTCATATACCATAAACCATATTATCAACCAATGTGGTGCAAACAAAAAAAAAACCATAATGT
7077271 AAATTATAGT
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
65 12 0.21
66 46 0.79
ACGTcount: A:0.45, C:0.20, G:0.09, T:0.25
Consensus pattern (65 bp):
AGTTCATATACCATAAACCATATTATCAACCAATGTGGTGCAAACAAAAAAAAAACCATAATGTC
Found at i:7082002 original size:18 final size:18
Alignment explanation
Indices: 7081977--7082032 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
7081967 CTTGGCCCAT
7081977 TACAGTAACAGTAAACAG
1 TACAGTAACAGTAAACAG
* *
7081995 TGCAGTAATAGTAAACAG
1 TACAGTAACAGTAAACAG
* *
7082013 TATAGTAACAGTAAGCAG
1 TACAGTAACAGTAAACAG
7082031 TA
1 TA
7082033 TGCAAGTCCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.46, C:0.12, G:0.20, T:0.21
Consensus pattern (18 bp):
TACAGTAACAGTAAACAG
Found at i:7082478 original size:27 final size:27
Alignment explanation
Indices: 7082369--7082488 Score: 93
Period size: 26 Copynumber: 4.5 Consensus size: 27
7082359 AGGGTCAAAA
* *
7082369 CAGTCAATTTACCATGTAGGGGCATTT
1 CAGTCATTTTACCATGTAGGGGCATAT
** *
7082396 CAGTCATTTTACCAACTA-GGGCAAAAT
1 CAGTCATTTTACCATGTAGGGGC-ATAT
* ** * *
7082423 -AGTCATTTTGCCACATAAGGGCA-AA
1 CAGTCATTTTACCATGTAGGGGCATAT
* *
7082448 CAGTCAATTTACCATGTAGGGGCATTT
1 CAGTCATTTTACCATGTAGGGGCATAT
*
7082475 CAGTTATTTTACCA
1 CAGTCATTTTACCA
7082489 ATGGAACGGT
Statistics
Matches: 71, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
25 1 0.01
26 37 0.52
27 33 0.46
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (27 bp):
CAGTCATTTTACCATGTAGGGGCATAT
Found at i:7088877 original size:18 final size:18
Alignment explanation
Indices: 7088851--7088891 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7088841 CCATAATGTG
7088851 GCCCATGTGGGCCCAC-AA
1 GCCCATGT-GGCCCACAAA
*
7088869 GCCCGTGTGGCCCACAAA
1 GCCCATGTGGCCCACAAA
7088887 GCCCA
1 GCCCA
7088892 AAAATGGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.22, C:0.41, G:0.27, T:0.10
Consensus pattern (18 bp):
GCCCATGTGGCCCACAAA
Found at i:7098192 original size:10 final size:10
Alignment explanation
Indices: 7098177--7098240 Score: 50
Period size: 10 Copynumber: 7.0 Consensus size: 10
7098167 TTTAAAATTT
7098177 AAAAATATTA
1 AAAAATATTA
7098187 AAAAATA--A
1 AAAAATATTA
7098195 AAAAAT-TT-
1 AAAAATATTA
* *
7098203 TAAATTATTA
1 AAAAATATTA
*
7098213 AAAAGTA-T-
1 AAAAATATTA
*
7098221 AAAAATATTT
1 AAAAATATTA
7098231 AAAAATATTA
1 AAAAATATTA
7098241 TTGTCAAAGA
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
8 17 0.40
9 4 0.10
10 21 0.50
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAAATATTA
Found at i:7098202 original size:26 final size:27
Alignment explanation
Indices: 7098170--7098240 Score: 99
Period size: 26 Copynumber: 2.6 Consensus size: 27
7098160 TAACTTTTTT
7098170 AAAATTTAAAAATATTAAAAA-ATAAA
1 AAAATTTAAAAATATTAAAAAGATAAA
* *
7098196 AAAATTTTAAATTATTAAAAAGTATAAA
1 AAAATTTAAAAATATTAAAAAG-ATAAA
*
7098224 AATATTTAAAAATATTA
1 AAAATTTAAAAATATTA
7098241 TTGTCAAAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
26 19 0.50
28 19 0.50
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (27 bp):
AAAATTTAAAAATATTAAAAAGATAAA
Found at i:7098229 original size:18 final size:17
Alignment explanation
Indices: 7098170--7098238 Score: 52
Period size: 18 Copynumber: 3.9 Consensus size: 17
7098160 TAACTTTTTT
7098170 AAAAT-TTAAAAATATTA
1 AAAATATTAAAAATA-TA
* * *
7098187 AAAA-ATAAAAAAATTTT
1 AAAATAT-TAAAAATATA
*
7098204 AAATTATTAAAAAGTATA
1 AAAATATTAAAAA-TATA
7098222 AAAATATTTAAAAATAT
1 AAAATA-TTAAAAATAT
7098239 TATTGTCAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
17 14 0.36
18 18 0.46
19 7 0.18
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (17 bp):
AAAATATTAAAAATATA
Found at i:7098479 original size:18 final size:19
Alignment explanation
Indices: 7098446--7098481 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7098436 AATGAATTAT
*
7098446 TATAATTATTATATATTGG
1 TATAATTATCATATATTGG
7098465 TATAATT-TCATATATTG
1 TATAATTATCATATATTG
7098482 TCCCTTGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (19 bp):
TATAATTATCATATATTGG
Found at i:7099626 original size:21 final size:21
Alignment explanation
Indices: 7099572--7099627 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
7099562 ATTCAAATAT
*
7099572 TAAAAATTATAAAAATATATA
1 TAAAAATTATAAAAATATAAA
* **
7099593 TATAAATCGTAAATAA-ATAAA
1 TAAAAATTATAAA-AATATAAA
7099614 TAAAAATTATAAAA
1 TAAAAATTATAAAA
7099628 TTTTATAAAA
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
20 1 0.04
21 24 0.89
22 2 0.07
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (21 bp):
TAAAAATTATAAAAATATAAA
Found at i:7099635 original size:19 final size:19
Alignment explanation
Indices: 7099613--7099680 Score: 61
Period size: 19 Copynumber: 3.6 Consensus size: 19
7099603 AAATAAATAA
7099613 ATAAAAATTATA-AAATTTT
1 ATAAAAATTATACAAA-TTT
**
7099632 ATAAAAATCGTACAAATTT
1 ATAAAAATTATACAAATTT
* *
7099651 AT-AAAATGTATAGAAATAT
1 ATAAAAAT-TATACAAATTT
7099670 A-AAAAATTATA
1 ATAAAAATTATA
7099681 AGATTTTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
18 9 0.22
19 28 0.70
20 3 0.08
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (19 bp):
ATAAAAATTATACAAATTT
Found at i:7099709 original size:56 final size:57
Alignment explanation
Indices: 7099572--7099730 Score: 153
Period size: 56 Copynumber: 2.7 Consensus size: 57
7099562 ATTCAAATAT
* * *
7099572 TAAAAATTATAAAAA-TATATATATAAATCGTAAATAAATAAATAAAAATTATAAAATTTTA
1 TAAAAATCATAAAAAGT-TATA-A-AAAT-GTAAAGAAATATA-AAAAATTATAAAATTTTA
* * * * *
7099633 TAAAAATCGTACAAATTTAT-AAAATGTATAGAAATATAAAAAATTATAAGATTTTA
1 TAAAAATCATAAAAAGTTATAAAAATGTAAAGAAATATAAAAAATTATAAAATTTTA
*
7099689 T-AAAGTCATAAAAAAGTTATACAAAATGTAAAGAAATATAAA
1 TAAAAATCAT-AAAAAGTTATA-AAAATGTAAAGAAATATAAA
7099731 TTTTATAAAA
Statistics
Matches: 82, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
55 6 0.07
56 26 0.32
57 10 0.12
58 23 0.28
59 1 0.01
61 15 0.18
62 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (57 bp):
TAAAAATCATAAAAAGTTATAAAAATGTAAAGAAATATAAAAAATTATAAAATTTTA
Found at i:7099905 original size:18 final size:19
Alignment explanation
Indices: 7099884--7099933 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
7099874 TTTTACGATT
7099884 TTTATATTTTTAT-TAAAA
1 TTTATATTTTTATCTAAAA
* *
7099902 TTTA-ATAATTTATCTAAAT
1 TTTATAT-TTTTATCTAAAA
*
7099921 TTTATTTTTTTAT
1 TTTATATTTTTAT
7099934 AATTTTTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
17 2 0.08
18 9 0.36
19 13 0.52
20 1 0.04
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTATATTTTTATCTAAAA
Found at i:7099912 original size:28 final size:25
Alignment explanation
Indices: 7099852--7099912 Score: 59
Period size: 29 Copynumber: 2.2 Consensus size: 25
7099842 TAAGGGTTAT
*
7099852 TAATTTTTTATTTTAATAAAATTTT
1 TAATTTTTTATTTTAATAAAATTTA
*
7099877 TACGATTTTTATATTTTTATTAAAATTTAA
1 TA--ATTTTT-TA-TTTTAATAAAATTT-A
7099907 TAATTT
1 TAATTT
7099913 ATCTAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
25 2 0.07
27 6 0.21
28 6 0.21
29 13 0.45
30 2 0.07
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (25 bp):
TAATTTTTTATTTTAATAAAATTTA
Found at i:7101392 original size:12 final size:12
Alignment explanation
Indices: 7101362--7101392 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7101352 ACATTGTTAT
*
7101362 ATGTTCATGAAC
1 ATGTTCGTGAAC
7101374 ATGTTCGTGAAC
1 ATGTTCGTGAAC
7101386 ATGTTCG
1 ATGTTCG
7101393 ATTAAGTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (12 bp):
ATGTTCGTGAAC
Found at i:7101866 original size:9 final size:9
Alignment explanation
Indices: 7101854--7101902 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
7101844 ACATATAAAA
7101854 AATTAACCG
1 AATTAACCG
*
7101863 AATTAACCA
1 AATTAACCG
*
7101872 AATTAACTG
1 AATTAACCG
*
7101881 AATTAATCG
1 AATTAACCG
*
7101890 AATCAACCG
1 AATTAACCG
7101899 AATT
1 AATT
7101903 TAATATATGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:7104279 original size:63 final size:63
Alignment explanation
Indices: 7104180--7104304 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 63
7104170 TGATGAAGCT
*
7104180 AACAGTCATCAGTAGATATTGGGTGAAATTTTACAAGTAGATTCTTAACTAAAACCCCAATCA
1 AACAGTCATCAGTAGATATTAGGTGAAATTTTACAAGTAGATTCTTAACTAAAACCCCAATCA
7104243 AACAGTCATCAGTAGATATTAGGTGAAATTTTACAAGTAGATTCTTAACTAAAACCCCAATC
1 AACAGTCATCAGTAGATATTAGGTGAAATTTTACAAGTAGATTCTTAACTAAAACCCCAATC
7104305 GATTTCAACA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.29
Consensus pattern (63 bp):
AACAGTCATCAGTAGATATTAGGTGAAATTTTACAAGTAGATTCTTAACTAAAACCCCAATCA
Found at i:7107956 original size:21 final size:21
Alignment explanation
Indices: 7107898--7107950 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
7107888 AAACTATATT
*
7107898 TTAAATATATA-AATATAATCA
1 TTAAATATTTATAAT-TAATCA
*
7107919 TTAAATATTTATAATTAATTA
1 TTAAATATTTATAATTAATCA
7107940 TTAACATATTT
1 TTAA-ATATTT
7107951 GTATTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 19 0.68
22 9 0.32
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (21 bp):
TTAAATATTTATAATTAATCA
Found at i:7108400 original size:18 final size:19
Alignment explanation
Indices: 7108369--7108407 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
7108359 AGGTTAAATT
7108369 ATAAAAAAATATTGAAAAA
1 ATAAAAAAATATTGAAAAA
* *
7108388 ATAAAAGAA-ATTGAGAAA
1 ATAAAAAAATATTGAAAAA
7108406 AT
1 AT
7108408 GTGTGTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (19 bp):
ATAAAAAAATATTGAAAAA
Found at i:7109072 original size:13 final size:13
Alignment explanation
Indices: 7109054--7109078 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7109044 TAAAAGGGTT
7109054 ATTAATTAAAAAG
1 ATTAATTAAAAAG
7109067 ATTAATTAAAAA
1 ATTAATTAAAAA
7109079 AAAACTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAG
Found at i:7116741 original size:24 final size:24
Alignment explanation
Indices: 7116709--7116766 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
7116699 GTGTTTTACA
7116709 ATTGAAATTGATTG-ATTTAGTATGTG
1 ATTG-AATTGATTGAATTTA-TAT-TG
*
7116735 A-TGAATTTATTGAATTTATATTG
1 ATTGAATTGATTGAATTTATATTG
7116758 ATTGAATTG
1 ATTGAATTG
7116767 GTATATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
23 3 0.11
24 17 0.61
25 7 0.25
26 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48
Consensus pattern (24 bp):
ATTGAATTGATTGAATTTATATTG
Found at i:7117030 original size:40 final size:40
Alignment explanation
Indices: 7116964--7117061 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 40
7116954 GGATTAATTT
* * *
7116964 GATGAGGCACTAGGTGCC-AA-T-TTACTTCGATTTAACC
1 GATGAGACACTGGGTGCCAAATTATTACTTCGAATTAACC
* *
7117001 GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCC
1 GATGAGACACTGGGTGCCAAATTATTACTTCGAATTAACC
*
7117041 GATGAGGCACTGGGTGCCAAA
1 GATGAGACACTGGGTGCCAAA
7117062 CTGGTGTATT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
37 15 0.29
38 2 0.04
39 1 0.02
40 33 0.65
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (40 bp):
GATGAGACACTGGGTGCCAAATTATTACTTCGAATTAACC
Found at i:7119871 original size:32 final size:32
Alignment explanation
Indices: 7119833--7119898 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
7119823 ATATGCGATG
7119833 GTCGCTGAACCATGTAAAATATATCATACATA
1 GTCGCTGAACCATGTAAAATATATCATACATA
7119865 GTCGCTGAACCATGTAAAATATATCATACATA
1 GTCGCTGAACCATGTAAAATATATCATACATA
7119897 GT
1 GT
7119899 GTAAAACCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (32 bp):
GTCGCTGAACCATGTAAAATATATCATACATA
Found at i:7119986 original size:13 final size:13
Alignment explanation
Indices: 7119964--7119993 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7119954 AATAGAATTC
*
7119964 AACAACAAAAAAA
1 AACAAAAAAAAAA
7119977 AACAAAAAAAAAA
1 AACAAAAAAAAAA
7119990 AACA
1 AACA
7119994 GATCCAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (13 bp):
AACAAAAAAAAAA
Found at i:7121139 original size:21 final size:22
Alignment explanation
Indices: 7121101--7121145 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
7121091 TTGAGTTTTG
*
7121101 ATTTCATATTATTATATTAATT
1 ATTTAATATTATTATATTAATT
*
7121123 ATTTAATATTA-TATATTCATT
1 ATTTAATATTATTATATTAATT
7121144 AT
1 AT
7121146 ATTTTTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTTAATATTATTATATTAATT
Found at i:7121287 original size:22 final size:22
Alignment explanation
Indices: 7121257--7121298 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7121247 TTTTACATAC
7121257 TATATTATTATGTT-ATTTTAG
1 TATATTATTATGTTAATTTTAG
*
7121278 TATAGTTATTATTTTAATTTT
1 TATA-TTATTATGTTAATTTT
7121299 CACTTTTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 9 0.50
23 5 0.28
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (22 bp):
TATATTATTATGTTAATTTTAG
Found at i:7123686 original size:35 final size:35
Alignment explanation
Indices: 7123647--7123714 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
7123637 AAAGTTTGGT
7123647 GAAAATGCATGATCGACTTGGGAAGAAGAGTCTAC
1 GAAAATGCATGATCGACTTGGGAAGAAGAGTCTAC
* *
7123682 GAAAATGCGTGATTGACTTGGGAAGAAGAGTCT
1 GAAAATGCATGATCGACTTGGGAAGAAGAGTCT
7123715 TTCATGTTGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.35, C:0.12, G:0.31, T:0.22
Consensus pattern (35 bp):
GAAAATGCATGATCGACTTGGGAAGAAGAGTCTAC
Found at i:7123922 original size:19 final size:20
Alignment explanation
Indices: 7123900--7123938 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
7123890 TTTATACTAC
*
7123900 TATATATTTT-TTAAATTTT
1 TATAAATTTTATTAAATTTT
*
7123919 TATAAATTTTATTTAATTTT
1 TATAAATTTTATTAAATTTT
7123939 CAGAGGTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TATAAATTTTATTAAATTTT
Found at i:7124099 original size:24 final size:26
Alignment explanation
Indices: 7124062--7124128 Score: 95
Period size: 25 Copynumber: 2.7 Consensus size: 26
7124052 GCGTAACCAT
*
7124062 TTTTTATATTAAAATATTATT-TTTTA
1 TTTTTA-AATAAAATATTATTATTTTA
7124088 -TTTTAAATAAAATATTATTATTTTA
1 TTTTTAAATAAAATATTATTATTTTA
7124113 TTTTTAAA-AAAATATT
1 TTTTTAAATAAAATATT
7124129 TAAATACATA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
24 13 0.34
25 18 0.47
26 7 0.18
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (26 bp):
TTTTTAAATAAAATATTATTATTTTA
Found at i:7124708 original size:60 final size:60
Alignment explanation
Indices: 7124615--7124733 Score: 211
Period size: 60 Copynumber: 2.0 Consensus size: 60
7124605 TTGTTTTTTA
* * *
7124615 TAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTGTTCTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTATTATGTTTG
7124675 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTATTATGTTT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTATTATGTTT
7124734 AGTTTAGTAG
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.34, C:0.01, G:0.11, T:0.54
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTATTATGTTTG
Found at i:7125242 original size:103 final size:104
Alignment explanation
Indices: 7124931--7125426 Score: 644
Period size: 102 Copynumber: 4.8 Consensus size: 104
7124921 TATAGTTATA
*
7124931 TATTTTGTTAGTAATTTATGGGATTATG-T-TATAAATTGTTAGTGTTTAG-TATAGAGTTTTGT
1 TATTTTGTTAGTAATTTAT--GATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGAGTTTTGT
* *
7124993 GATTTTTTAGTAATGTA-ATTTTAAAAAATAATTTTATAGT
64 GATTTTTTAGTAATATATTTTTTAAAAAATAATTTTATAGT
* * * * *
7125033 TATTTTGTTACTAATTTATGGGATTAGG-T-TACAAATTGTTAGTGTTTA-ATATAGGGTGTTGT
1 TATTTTGTTAGTAATTTAT--GATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGAGTTTTGT
* **
7125095 GATTTTTTAGTAATCTAATTTTTTTTTAAAATAATTTTATAGT
64 GATTTTTTAGTAATAT-A-TTTTTTAAAAAATAATTTTATAGT
*
7125138 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTAT-GTGTTTTGTGA
1 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGAGTTTTGTGA
*
7125202 TTTTTTAGTAATATATTTTTTTAAAAATAATTTTATAGT
66 TTTTTTAGTAATATATTTTTTAAAAAATAATTTTATAGT
7125241 TATTTTGTTAGTAATTTATGATTA-GTTATATAAATTGTTAGTGTTTAGTTAT-GAG-TTT-TGA
1 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGAGTTTTGTGA
* * **
7125302 TTTTTTTGTAATGTATTTCTAAAAAATAATAATTTTATAGT
66 TTTTTTAGTAATATATTT-TTTAAAA-AATAATTTTATAGT
*
7125343 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTT-TAGTGTTTTGTGA
1 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGAGTTTTGTGA
*
7125407 TTTTTT--TAATATAATTTTTA
66 TTTTTTAGTAATATATTTTTTA
7125427 TATAATGTAA
Statistics
Matches: 354, Mismatches: 27, Indels: 26
0.87 0.07 0.06
Matches are distributed among these distances:
100 19 0.05
101 7 0.02
102 142 0.40
103 91 0.26
104 5 0.01
105 87 0.25
106 3 0.01
ACGTcount: A:0.29, C:0.01, G:0.15, T:0.54
Consensus pattern (104 bp):
TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGAGTTTTGTGA
TTTTTTAGTAATATATTTTTTAAAAAATAATTTTATAGT
Found at i:7125377 original size:205 final size:207
Alignment explanation
Indices: 7124931--7125426 Score: 683
Period size: 205 Copynumber: 2.4 Consensus size: 207
7124921 TATAGTTATA
* *
7124931 TATTTTGTTAGTAATTTATGGGATTATG-T-TATAAATTGTTAGTGTTTAG-TATAGAGTTTTGT
1 TATTTTGTTAGTAATTTAT--GATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGTGTTTTGT
* *
7124993 GATTTTTTAGTAATGTAATTTTAAAAAATAATTTTATAGTTATTTTGTTACTAATTTATGGGATT
64 GATTTTTTAGTAATATATTTTTAAAAAATAATTTTATAGTTATTTTGTTACTAATTTAT-GGATT
* * ****
7125058 AGGTTACAAATTGTTAGTGTTTAATATAGGGTGTTGTGATTTTTTAGTAATCTAATTTTTTTTTA
128 AGGTTACAAATTGTTAGTGTTTAATATAGAGTGTTGTGATTTTTTAGTAATCTAATTTCTAAAAA
7125123 AAATAATTTTATAGT
193 AAATAATTTTATAGT
7125138 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTAT-GTGTTTTGTGA
1 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGTGTTTTGTGA
* *
7125202 TTTTTTAGTAATATATTTTTTTAAAAATAATTTTATAGTTATTTTGTTAGTAATTTAT-GATTAG
66 TTTTTTAGTAATATA-TTTTTAAAAAATAATTTTATAGTTATTTTGTTACTAATTTATGGATTAG
* * * * *
7125266 TTATATAAATTGTTAGTGTTTAGT-TATGAGT-TT-TGATTTTTTTGTAATGT-ATTTCTAAAAA
130 GT-TACAAATTGTTAGTGTTTAATATA-GAGTGTTGTGATTTTTTAGTAATCTAATTTCTAAAAA
7125327 ATAATAATTTTATAGT
193 A-AATAATTTTATAGT
7125343 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTT-TAGTGTTTTGTGA
1 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGTGTTTTGTGA
7125407 TTTTTT--TAATATAATTTTTA
66 TTTTTTAGTAATAT-ATTTTTA
7125427 TATAATGTAA
Statistics
Matches: 262, Mismatches: 18, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
203 11 0.04
204 9 0.03
205 103 0.39
206 12 0.05
207 85 0.32
208 42 0.16
ACGTcount: A:0.29, C:0.01, G:0.15, T:0.54
Consensus pattern (207 bp):
TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTATAGTGTTTTGTGA
TTTTTTAGTAATATATTTTTAAAAAATAATTTTATAGTTATTTTGTTACTAATTTATGGATTAGG
TTACAAATTGTTAGTGTTTAATATAGAGTGTTGTGATTTTTTAGTAATCTAATTTCTAAAAAAAA
TAATTTTATAGT
Found at i:7130491 original size:5 final size:6
Alignment explanation
Indices: 7130468--7130498 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
7130458 TTAAATCTAC
7130468 TAAAAA TTAAAAA TAAAAA TAAAAA TAAAAA
1 TAAAAA -TAAAAA TAAAAA TAAAAA TAAAAA
7130499 GTAGTTTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:7132331 original size:46 final size:47
Alignment explanation
Indices: 7132278--7132453 Score: 204
Period size: 46 Copynumber: 3.8 Consensus size: 47
7132268 TATTTGGGCA
7132278 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-TG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACTG
*
7132324 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAACT--G
* * *
7132369 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACTG
* *
7132418 -CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7132454 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 6, Indels: 22
0.80 0.04 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 1 0.01
45 1 0.01
46 63 0.56
47 27 0.24
49 2 0.02
50 5 0.04
51 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACTG
Found at i:7132431 original size:93 final size:93
Alignment explanation
Indices: 7132274--7132445 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
7132264 AGGATATTTG
* * *
7132274 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCCGAACTCATTGAG
7132339 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
7132367 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAG-CCGAGCTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-AGTCCGAACTCATTGA
7132431 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
7132446 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 72 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:7138352 original size:19 final size:20
Alignment explanation
Indices: 7138328--7138372 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
7138318 TAAAAGCAAC
*
7138328 ACAACATCAAG-CTAAATAA
1 ACAACATCAAGTCCAAATAA
**
7138347 ACAACATTTAGTCCAAATAA
1 ACAACATCAAGTCCAAATAA
7138367 ACAACA
1 ACAACA
7138373 AAAACAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.56, C:0.22, G:0.04, T:0.18
Consensus pattern (20 bp):
ACAACATCAAGTCCAAATAA
Found at i:7138879 original size:277 final size:273
Alignment explanation
Indices: 7138356--7139143 Score: 1168
Period size: 277 Copynumber: 2.8 Consensus size: 273
7138346 AACAACATTT
* *
7138356 AGTCCAAATAAACAACAAAAACAATACAACAAGATTATAATAAAAAGAACATAAGTAAAAGTCTA
1 AGTCCAAATAAACAAAAAAAACAATACAACAAGATTATAATAAAAA-AACATAAGTAAAAGTCCA
* *
7138421 AGTAAACAACATGAGTCGAAA-TAAACAACAACACTATAATAAAAAAAATATAAGCAAAAGTCCA
65 AGTAAACAACATGAGTC-AAAGTAAACAACAACATTATAA-AAAAAAAACATAAGCAAAAGTCCA
* * *
7138485 AAATATAATAGAAACCTACACCAGTC-AAAAAAAAAAGAACACAACAAAAGTCCAATTAACCAAC
128 AAATACAATAGAAATCTACACCAGCCAAAAAAAAAAAGAACACAACAAAAGTCCAATTAACCAAC
*
7138549 AACAATAACAAACCAAACCAAACTAATAACAATAACACATTAGTTCAAAAACCATTATAGAATAG
193 AACAATAACAAACCAAACCAAACTAATAACAATAACACATCAGTTCAAAAACCATTATAGAATAG
7138614 TTCAAGTTTCTTCATG
258 TTCAAGTTTCTTCATG
* **
7138630 AGTCTAAATAAACATTAAAAACAATACAACAAGATTATAATAAAAAAACATAAGTAAAAGTCCAA
1 AGTCCAAATAAACAAAAAAAACAATACAACAAGATTATAATAAAAAAACATAAGTAAAAGTCCAA
*
7138695 GTAAACAACATGAGTCAAAGTAAACAACAATATTATATAACAAAAAAACATAAGCAAAAGTCCAA
66 GTAAACAACATGAGTCAAAGTAAACAACAACATTATA-AA-AAAAAAACATAAGCAAAAGTCCAA
*
7138760 AATACAATAGAAATCTACACCAGACCAAAAAGAAAAAAGAACACAACAAAAATCCAATTAACCAA
129 AATACAATAGAAATCTACACCAG-CCAAAAA-AAAAAAGAACACAACAAAAGTCCAATTAACCAA
*
7138825 CAACAATAACAAACCAAACCAAACTAATAACAATAACAGATCAGTTCAAAAACCATTATAGAATA
192 CAACAATAACAAACCAAACCAAACTAATAACAATAACACATCAGTTCAAAAACCATTATAGAATA
*
7138890 GTTTAAGTTTCTTCATG
257 GTTCAAGTTTCTTCATG
* *
7138907 AGTCCAAATAAACTACAAAAAAA-AATACAATAATATTATAATAAAAAAAACATAAGTAAAAGTC
1 AGTCCAAATAAAC-A-AAAAAAACAATACAACAAGATTATAAT-AAAAAAACATAAGTAAAAGTC
* * * * * *
7138971 CAAGTAAATAGCATGACTCGAAGTAAATAACAACATTAAAAAAAAAAAACATAAGCAAAAGTCCA
63 CAAGTAAACAACATGAGTCAAAGTAAACAACAACATTATAAAAAAAAAACATAAGCAAAAGTCCA
* * * **
7139036 AAATGCAATAGAAATCTACACCATTCCAAACAAACAAACAAAAAACACAACAAAAGTTTAATTAA
128 AAATACAATAGAAATCTACACCA-GCC-AA-AAA-AAA-AAAGAACACAACAAAAGTCCAATTAA
7139101 CCAACAACAATAACAAACCAAACCAAACTAATAACAATAACAC
188 CCAACAACAATAACAAACCAAACCAAACTAATAACAATAACAC
7139144 CATTATAGAA
Statistics
Matches: 467, Mismatches: 34, Indels: 20
0.90 0.07 0.04
Matches are distributed among these distances:
272 3 0.01
273 50 0.11
274 88 0.19
275 1 0.00
276 4 0.01
277 170 0.36
278 22 0.05
279 65 0.14
280 64 0.14
ACGTcount: A:0.58, C:0.18, G:0.07, T:0.18
Consensus pattern (273 bp):
AGTCCAAATAAACAAAAAAAACAATACAACAAGATTATAATAAAAAAACATAAGTAAAAGTCCAA
GTAAACAACATGAGTCAAAGTAAACAACAACATTATAAAAAAAAAACATAAGCAAAAGTCCAAAA
TACAATAGAAATCTACACCAGCCAAAAAAAAAAAGAACACAACAAAAGTCCAATTAACCAACAAC
AATAACAAACCAAACCAAACTAATAACAATAACACATCAGTTCAAAAACCATTATAGAATAGTTC
AAGTTTCTTCATG
Found at i:7139433 original size:19 final size:20
Alignment explanation
Indices: 7139409--7139453 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
7139399 TAAAGTTAAA
*
7139409 TTATTTAATCATTTTTA-TT
1 TTATTTAATCATTTTAATTT
* *
7139428 TTATTTTATTATTTTAATTT
1 TTATTTAATCATTTTAATTT
7139448 TTATTT
1 TTATTT
7139454 CTTTCTCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
TTATTTAATCATTTTAATTT
Found at i:7139441 original size:13 final size:12
Alignment explanation
Indices: 7139419--7139453 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
7139409 TTATTTAATC
7139419 ATTTTTATTTTA
1 ATTTTTATTTTA
*
7139431 TTTTATTATTTTA
1 ATTT-TTATTTTA
7139444 ATTTTTATTT
1 ATTTTTATTT
7139454 CTTTCTCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
ATTTTTATTTTA
Found at i:7142076 original size:122 final size:122
Alignment explanation
Indices: 7141856--7142095 Score: 417
Period size: 122 Copynumber: 2.0 Consensus size: 122
7141846 GGTAGTGAAA
* * *
7141856 GAGGTATTAGAAGATGTGTTCCAAGTTAGGATAAGGGAGACTAGTGAAACTCTGTAAGATAGGTG
1 GAGGTATTAGAAGAAGTGTTCCAAGCTAGGATAAGGGAGACTAGTGAAACTCTATAAGATAGGTG
7141921 CGTGGATTGTGGGAAGAAAAGAGATCGCAGTCCTCTGAGGTTGGAGCCTCATTGAGG
66 CGTGGATTGTGGGAAGAAAAGAGATCGCAGTCCTCTGAGGTTGGAGCCTCATTGAGG
* *
7141978 GAGGTATTAGAGGAAGTGTTCGAAGCTAGGATAAGGGAGACTAGTGAAACTCTATAAGATAGGTG
1 GAGGTATTAGAAGAAGTGTTCCAAGCTAGGATAAGGGAGACTAGTGAAACTCTATAAGATAGGTG
* *
7142043 CGTGGATTGTGGGAAGAAAAGAGATTGCGGTCCTCTGAGGTTGGAGCCTCATT
66 CGTGGATTGTGGGAAGAAAAGAGATCGCAGTCCTCTGAGGTTGGAGCCTCATT
7142096 CTTCGAAGCG
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
122 111 1.00
ACGTcount: A:0.30, C:0.11, G:0.35, T:0.25
Consensus pattern (122 bp):
GAGGTATTAGAAGAAGTGTTCCAAGCTAGGATAAGGGAGACTAGTGAAACTCTATAAGATAGGTG
CGTGGATTGTGGGAAGAAAAGAGATCGCAGTCCTCTGAGGTTGGAGCCTCATTGAGG
Found at i:7143346 original size:10 final size:10
Alignment explanation
Indices: 7143331--7143366 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
7143321 GGGAATTTAG
7143331 GATTTTTGAT
1 GATTTTTGAT
7143341 GATTTTTG--
1 GATTTTTGAT
7143349 GATTTTTGAT
1 GATTTTTGAT
7143359 GATTTTTG
1 GATTTTTG
7143367 GAACCACACG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 8 0.33
10 16 0.67
ACGTcount: A:0.17, C:0.00, G:0.22, T:0.61
Consensus pattern (10 bp):
GATTTTTGAT
Found at i:7143353 original size:18 final size:18
Alignment explanation
Indices: 7143330--7143368 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
7143320 TGGGAATTTA
7143330 GGATTTTTGATGATTTTT
1 GGATTTTTGATGATTTTT
7143348 GGATTTTTGATGATTTTT
1 GGATTTTTGATGATTTTT
7143366 GGA
1 GGA
7143369 ACCACACGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.56
Consensus pattern (18 bp):
GGATTTTTGATGATTTTT
Found at i:7143536 original size:21 final size:21
Alignment explanation
Indices: 7143510--7143549 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7143500 GGGCATGTAG
7143510 GGCCTTCACATAGGCGTGTGC
1 GGCCTTCACATAGGCGTGTGC
*
7143531 GGCCTTCACATAGGTGTGT
1 GGCCTTCACATAGGCGTGT
7143550 AGACCACTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.25, G:0.33, T:0.28
Consensus pattern (21 bp):
GGCCTTCACATAGGCGTGTGC
Found at i:7147233 original size:21 final size:20
Alignment explanation
Indices: 7147216--7147252 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7147206 GAGCAAAAGG
7147216 ACAGAG-AAACGAGCCAAAA
1 ACAGAGAAAACGAGCCAAAA
*
7147235 ACAGAGAAAACGGGCCAA
1 ACAGAGAAAACGAGCCAA
7147253 CGTGGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.54, C:0.22, G:0.24, T:0.00
Consensus pattern (20 bp):
ACAGAGAAAACGAGCCAAAA
Found at i:7149757 original size:19 final size:19
Alignment explanation
Indices: 7149733--7149790 Score: 82
Period size: 19 Copynumber: 3.0 Consensus size: 19
7149723 AAGGAAAATG
7149733 GAGCGAAAATCATTCAATA
1 GAGCGAAAATCATTCAATA
*
7149752 GAGCGAAACAT-ATGCAAATA
1 GAGCGAAA-ATCATTC-AATA
7149772 GAGCGAAAATCATTCAATA
1 GAGCGAAAATCATTCAATA
7149791 ATTCAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (19 bp):
GAGCGAAAATCATTCAATA
Found at i:7149942 original size:3 final size:3
Alignment explanation
Indices: 7149936--7149980 Score: 81
Period size: 3 Copynumber: 14.7 Consensus size: 3
7149926 ACTAATAATT
7149936 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAGG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA-G AAG AA
7149981 TGGTTTATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 38 0.93
4 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7150280 original size:9 final size:9
Alignment explanation
Indices: 7150268--7150304 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
7150258 ATATAGTTTA
*
7150268 TATTCGATT
1 TATTCGAAT
7150277 TATTCGAAT
1 TATTCGAAT
*
7150286 TATTCGAGT
1 TATTCGAAT
7150295 TATTCGAAT
1 TATTCGAAT
7150304 T
1 T
7150305 CGAAAATTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7150291 original size:18 final size:18
Alignment explanation
Indices: 7150268--7150304 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
7150258 ATATAGTTTA
*
7150268 TATTCGATTTATTCGAAT
1 TATTCGAGTTATTCGAAT
7150286 TATTCGAGTTATTCGAAT
1 TATTCGAGTTATTCGAAT
7150304 T
1 T
7150305 CGAAAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.49
Consensus pattern (18 bp):
TATTCGAGTTATTCGAAT
Found at i:7154273 original size:14 final size:14
Alignment explanation
Indices: 7154254--7154282 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7154244 CATACATAGC
7154254 TCTTGAACTCCATG
1 TCTTGAACTCCATG
7154268 TCTTGAACTCCATG
1 TCTTGAACTCCATG
7154282 T
1 T
7154283 TCTTCACCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.38
Consensus pattern (14 bp):
TCTTGAACTCCATG
Found at i:7155018 original size:27 final size:27
Alignment explanation
Indices: 7154979--7155083 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
7154969 AAAATTAAGC
*
7154979 ACCAGTGGTGCCTATCAGATAGGCGT-A
1 ACCAGTGGCGCCTATCAGATAGGC-TCA
* * *
7155006 ACCAGTGGCGCCTGTTAGATAGGCTCC
1 ACCAGTGGCGCCTATCAGATAGGCTCA
* * *
7155033 ACCAGTCGCGCCTA-CTAGATAGACTCC
1 ACCAGTGGCGCCTATC-AGATAGGCTCA
* * * *
7155060 ACTAGTTGCCCCTACCAGATAGGC
1 ACCAGTGGCGCCTATCAGATAGGC
7155084 ACTACCAACC
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
26 1 0.02
27 61 0.97
28 1 0.02
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (27 bp):
ACCAGTGGCGCCTATCAGATAGGCTCA
Found at i:7155491 original size:21 final size:24
Alignment explanation
Indices: 7155460--7155502 Score: 65
Period size: 21 Copynumber: 1.9 Consensus size: 24
7155450 TTAATTCATT
7155460 AAATAATATATTT-TG-TAATTTC
1 AAATAATATATTTGTGCTAATTTC
7155482 AAAT-ATATATTTGTGCTAATT
1 AAATAATATATTTGTGCTAATT
7155503 AAATGATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 6 0.32
23 5 0.26
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.49
Consensus pattern (24 bp):
AAATAATATATTTGTGCTAATTTC
Found at i:7155506 original size:21 final size:20
Alignment explanation
Indices: 7155457--7155506 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
7155447 TTTTTAATTC
7155457 ATTAAATAATATATTTTGTA
1 ATTAAATAATATATTTTGTA
7155477 ATTTCAAAT-ATATATTTGTGCTA
1 A-TT-AAATAATATATTT-TG-TA
7155500 ATTAAAT
1 ATTAAAT
7155507 GATGATTAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 1 0.04
21 14 0.54
22 8 0.31
23 3 0.12
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (20 bp):
ATTAAATAATATATTTTGTA
Found at i:7158019 original size:27 final size:26
Alignment explanation
Indices: 7157982--7158096 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
7157972 AGCATGGCTG
** *
7157982 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
7158008 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
7158036 CCAGAACAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
7158063 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
7158090 CCAGAAC
1 CCAGAAC
7158097 GCTTCCTCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.06
27 59 0.75
28 15 0.19
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:7158041 original size:54 final size:54
Alignment explanation
Indices: 7157982--7158096 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
7157972 AGCATGGCTG
* *
7157982 CCAGAACAGATA-ATGTGATAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * *
7158036 CCAGAACAGATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
7158090 CCAGAAC
1 CCAGAAC
7158097 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 37 0.70
55 16 0.30
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:7159751 original size:26 final size:26
Alignment explanation
Indices: 7159715--7159824 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
7159705 CATGAAATTC
7159715 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7159741 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
7159767 TTATTATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
7159793 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7159819 TTATCA
1 TTATCA
7159825 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7163900 original size:18 final size:18
Alignment explanation
Indices: 7163877--7163918 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
7163867 AAGTTGTGAT
7163877 AATTATAATTTAAATTAC
1 AATTATAATTTAAATTAC
7163895 AATTATAATTTAAATTAC
1 AATTATAATTTAAATTAC
7163913 AATTAT
1 AATTAT
7163919 TAGTGAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (18 bp):
AATTATAATTTAAATTAC
Found at i:7174330 original size:16 final size:16
Alignment explanation
Indices: 7174296--7174328 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
7174286 GAGTAATTGA
7174296 TTTAAAAAAATATATT
1 TTTAAAAAAATATATT
7174312 TTT-AAAAAAT-TATT
1 TTTAAAAAAATATATT
7174326 TTT
1 TTT
7174329 TTTTATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 7 0.41
16 3 0.18
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTAAAAAAATATATT
Found at i:7175813 original size:21 final size:22
Alignment explanation
Indices: 7175787--7175831 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
7175777 ATTAGTCAGC
* *
7175787 AAGAAATGAATAA-AAATGAGG
1 AAGAAATGAAGAAGAAAAGAGG
7175808 AAGAAATGAAGAAGAAAAGAGG
1 AAGAAATGAAGAAGAAAAGAGG
7175830 AA
1 AA
7175832 ATTTCAGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (22 bp):
AAGAAATGAAGAAGAAAAGAGG
Found at i:7175816 original size:11 final size:11
Alignment explanation
Indices: 7175787--7175824 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7175777 ATTAGTCAGC
*
7175787 AAGAAATGAAT
1 AAGAAATGAAG
*
7175798 AA-AAATGAGG
1 AAGAAATGAAG
7175808 AAGAAATGAAG
1 AAGAAATGAAG
7175819 AAGAAA
1 AAGAAA
7175825 AGAGGAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.66, C:0.00, G:0.24, T:0.11
Consensus pattern (11 bp):
AAGAAATGAAG
Found at i:7175945 original size:3 final size:3
Alignment explanation
Indices: 7175939--7175965 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7175929 AGTGGTGGTT
7175939 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
7175966 AATATTGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:7187651 original size:23 final size:24
Alignment explanation
Indices: 7187621--7187675 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
7187611 TCCAACTTAA
7187621 ATTTAAAT-TAAAAATAAAAAATT
1 ATTTAAATCTAAAAATAAAAAATT
** *
7187644 ATTTAAATCTAATTATAAAATATT
1 ATTTAAATCTAAAAATAAAAAATT
7187668 ATTATAAA
1 ATT-TAAA
7187676 AATATTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 8 0.30
24 15 0.56
25 4 0.15
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
ATTTAAATCTAAAAATAAAAAATT
Found at i:7194471 original size:21 final size:20
Alignment explanation
Indices: 7194435--7194473 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
7194425 TGTCGATGAC
7194435 CAAAAGTTCATGCAAACAGA
1 CAAAAGTTCATGCAAACAGA
7194455 CAAAATGTTC-TGACAAACA
1 CAAAA-GTTCATG-CAAACA
7194474 AACGTATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.49, C:0.21, G:0.13, T:0.18
Consensus pattern (20 bp):
CAAAAGTTCATGCAAACAGA
Found at i:7195291 original size:23 final size:21
Alignment explanation
Indices: 7195245--7195300 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
7195235 AGCAAAGCAG
*
7195245 ACACAGCCGTGTGGAGATCTC
1 ACACACCCGTGTGGAGATCTC
7195266 ACACACCCGTGTGGAGATCTC
1 ACACACCCGTGTGGAGATCTC
7195287 ACACACCCGTGTGG
1 ACACACCCGTGTGG
7195301 GGACACATGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (21 bp):
ACACACCCGTGTGGAGATCTC
Found at i:7209886 original size:24 final size:24
Alignment explanation
Indices: 7209859--7209911 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
7209849 GATAGTGGGG
*
7209859 TTTTTGGCTTTCGCCAAAACCCTA
1 TTTTCGGCTTTCGCCAAAACCCTA
7209883 TTTTCGGCTTTCGCCAAAACCCTA
1 TTTTCGGCTTTCGCCAAAACCCTA
7209907 TTTTC
1 TTTTC
7209912 TACGTTTTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.19, C:0.30, G:0.11, T:0.40
Consensus pattern (24 bp):
TTTTCGGCTTTCGCCAAAACCCTA
Found at i:7212463 original size:41 final size:40
Alignment explanation
Indices: 7212404--7212488 Score: 107
Period size: 41 Copynumber: 2.1 Consensus size: 40
7212394 CATTTCCAGC
*
7212404 TGGAAGCTCTTTTACCACATTAACTGAAAAAGCTTCCACT
1 TGGAAGCTCTTTTACCACATCAACTGAAAAAGCTTCCACT
* ** * *
7212444 TGGAAGCTCTTTCTGCCACATCAGTTGAAAAAGCTTTCAGT
1 TGGAAGCTCTTT-TACCACATCAACTGAAAAAGCTTCCACT
7212485 TGGA
1 TGGA
7212489 GGCATTTTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
40 12 0.32
41 26 0.68
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (40 bp):
TGGAAGCTCTTTTACCACATCAACTGAAAAAGCTTCCACT
Found at i:7214609 original size:30 final size:30
Alignment explanation
Indices: 7214554--7214611 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
7214544 AGAAGAGCAT
* *
7214554 CAAGGCATTGGAAGCACGCAGAAGAAGAAA
1 CAAGGCATTGGAAGCACACAAAAGAAGAAA
* *
7214584 CAAGGCATTGGGAGCGCACAAAAGAAGA
1 CAAGGCATTGGAAGCACACAAAAGAAGA
7214612 GGCACTGCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.45, C:0.17, G:0.31, T:0.07
Consensus pattern (30 bp):
CAAGGCATTGGAAGCACACAAAAGAAGAAA
Found at i:7216678 original size:46 final size:44
Alignment explanation
Indices: 7216626--7216714 Score: 124
Period size: 46 Copynumber: 2.0 Consensus size: 44
7216616 AGAACAGAAA
*
7216626 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGAAAGGAT
1 TGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAGAAAGGAT
* * *
7216672 TGAGCCATGTATGTCCATATTATATATGGCATTGGAGACAGGA
1 TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGAAAGGA
7216715 ATAATTCATG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 19 0.49
46 20 0.51
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGAAAGGAT
Found at i:7216725 original size:44 final size:45
Alignment explanation
Indices: 7216628--7216730 Score: 118
Period size: 44 Copynumber: 2.3 Consensus size: 45
7216618 AACAGAAATG
* * *
7216628 AGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGAAAGGATTG
1 AGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGAAAGGAATA
* * *
7216674 AGCCATGTATGTCCATATT-ATATATGGCATTGGAGACAGGAATA
1 AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGAAAGGAATA
**
7216718 ATTCATGTAAGTC
1 AGCCATGTAAGTC
7216731 TATGTCAAAG
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
44 30 0.62
46 18 0.38
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (45 bp):
AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGAAAGGAATA
Found at i:7225211 original size:17 final size:17
Alignment explanation
Indices: 7225189--7225223 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7225179 AATATTATTT
7225189 ATTAAATTAAATTT-TCA
1 ATTAAA-TAAATTTCTCA
7225206 ATTAAATAAATTTCTCA
1 ATTAAATAAATTTCTCA
7225223 A
1 A
7225224 CCCAATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (17 bp):
ATTAAATAAATTTCTCA
Found at i:7226755 original size:11 final size:11
Alignment explanation
Indices: 7226739--7226763 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7226729 ATATCTAGAA
7226739 TTCTCTTCATT
1 TTCTCTTCATT
7226750 TTCTCTTCATT
1 TTCTCTTCATT
7226761 TTC
1 TTC
7226764 ATCAGTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTCTTCATT
Found at i:7232335 original size:22 final size:22
Alignment explanation
Indices: 7232288--7232335 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7232278 TAAGGTAATA
* *
7232288 AAAATAGTGAGAAAACAATAAG
1 AAAATAGTGAGAAAACAACAAC
7232310 AAAATAGT-AGCAAAACAACAAC
1 AAAATAGTGAG-AAAACAACAAC
7232332 AAAA
1 AAAA
7232336 AAGCAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.67, C:0.10, G:0.12, T:0.10
Consensus pattern (22 bp):
AAAATAGTGAGAAAACAACAAC
Found at i:7237353 original size:16 final size:16
Alignment explanation
Indices: 7237315--7237356 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
7237305 TTATTATTAT
7237315 TATT-ATTATTAATTTA
1 TATTAATTA-TAATTTA
*
7237331 T-TAAATTATAATTTA
1 TATTAATTATAATTTA
7237346 TATTAATTATA
1 TATTAATTATA
7237357 TTATGAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTAATTATAATTTA
Found at i:7237503 original size:15 final size:15
Alignment explanation
Indices: 7237485--7237516 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7237475 TTAAGTAAAG
7237485 ATAT-TTATA-TATT
1 ATATATTATATTATT
7237498 ATATATTATATTATT
1 ATATATTATATTATT
7237513 ATAT
1 ATAT
7237517 TAATAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 4 0.24
14 5 0.29
15 8 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATATATTATATTATT
Found at i:7241023 original size:78 final size:78
Alignment explanation
Indices: 7240889--7241055 Score: 253
Period size: 78 Copynumber: 2.1 Consensus size: 78
7240879 ATTATATCCT
* *
7240889 TGATTGCACTTACATGCCCTTATTTTACTTCGGTACCCTTGATCGCACTTACATGCCCCTGTTGT
1 TGATAGCACTTACATGCCCTTATTGTACTTCGGTACCCTTGATCGCACTTACATGCCCCTGTTGT
*
7240954 ACTTCGGTACCCC
66 ACTTCAGTACCCC
* * * *
7240967 TGATCGCACTTACATGCCGTTGTTGTATTTCGGTACCCTTGATCGCACTTACATGCCCCTGTTGT
1 TGATAGCACTTACATGCCCTTATTGTACTTCGGTACCCTTGATCGCACTTACATGCCCCTGTTGT
**
7241032 ACTTCAGTATTCC
66 ACTTCAGTACCCC
7241045 TGATAGCACTT
1 TGATAGCACTT
7241056 TTAAGTCGTG
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.17, C:0.29, G:0.17, T:0.37
Consensus pattern (78 bp):
TGATAGCACTTACATGCCCTTATTGTACTTCGGTACCCTTGATCGCACTTACATGCCCCTGTTGT
ACTTCAGTACCCC
Found at i:7241055 original size:39 final size:39
Alignment explanation
Indices: 7240886--7241036 Score: 230
Period size: 39 Copynumber: 3.9 Consensus size: 39
7240876 ATAATTATAT
* * * *
7240886 CCTTGATTGCACTTACATGCCCTTATTTTACTTCGGTAC
1 CCTTGATCGCACTTACATGCCCCTGTTGTACTTCGGTAC
7240925 CCTTGATCGCACTTACATGCCCCTGTTGTACTTCGGTAC
1 CCTTGATCGCACTTACATGCCCCTGTTGTACTTCGGTAC
* ** *
7240964 CCCTGATCGCACTTACATGCCGTTGTTGTATTTCGGTAC
1 CCTTGATCGCACTTACATGCCCCTGTTGTACTTCGGTAC
7241003 CCTTGATCGCACTTACATGCCCCTGTTGTACTTC
1 CCTTGATCGCACTTACATGCCCCTGTTGTACTTC
7241037 AGTATTCCTG
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 100 1.00
ACGTcount: A:0.16, C:0.31, G:0.17, T:0.36
Consensus pattern (39 bp):
CCTTGATCGCACTTACATGCCCCTGTTGTACTTCGGTAC
Found at i:7241075 original size:78 final size:78
Alignment explanation
Indices: 7240917--7241075 Score: 219
Period size: 78 Copynumber: 2.0 Consensus size: 78
7240907 CTTATTTTAC
* * *
7240917 TTCGGTACCCTTGATCGCACTTACATGCCCCTGTTGTACTTCGGTACCCCTGATCGCACTTACAT
1 TTCGGTACCCTTGATCGCACTTACATGCCCCTGTTGTACTTCAGTACCCCTGATAGCACTTACAA
* **
7240982 GCCGTTGTTGTAT
66 GCCGTGGTTACAT
** **
7240995 TTCGGTACCCTTGATCGCACTTACATGCCCCTGTTGTACTTCAGTATTCCTGATAGCACTTTTAA
1 TTCGGTACCCTTGATCGCACTTACATGCCCCTGTTGTACTTCAGTACCCCTGATAGCACTTACAA
*
7241060 GTCGTGGTTACAT
66 GCCGTGGTTACAT
7241073 TTC
1 TTC
7241076 AGTAGCATTA
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 70 1.00
ACGTcount: A:0.17, C:0.28, G:0.18, T:0.36
Consensus pattern (78 bp):
TTCGGTACCCTTGATCGCACTTACATGCCCCTGTTGTACTTCAGTACCCCTGATAGCACTTACAA
GCCGTGGTTACAT
Done.