Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 240 of 250
Found at i:74217375 original size:27 final size:26
Alignment explanation
Indices: 74217320--74217386 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 26
74217310 AATTCGCTCA
*
74217320 TTTTTTTAAATCTATTTATATTAATT
1 TTTTTTTAAATATATTTATATTAATT
74217346 TTTTTTCTAAATATA-TTATATTTCAATT
1 TTTTTT-TAAATATATTTATA-TT-AATT
74217374 TTATATTTTAAAT
1 TT-T-TTTTAAAT
74217387 GTTTTTCTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
26 11 0.31
27 9 0.26
28 6 0.17
29 6 0.17
30 3 0.09
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (26 bp):
TTTTTTTAAATATATTTATATTAATT
Found at i:74219714 original size:31 final size:31
Alignment explanation
Indices: 74219670--74219739 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
74219660 TATGAAAATA
* * *
74219670 ATGTGTACAATTGA-CTCAAAATTAAAGTTTT
1 ATGTGTATAATTGAGC-CAAAATCAAAGTTTC
*
74219701 ATGTGTATGATTGAGCCAAAATCAAAGTTTC
1 ATGTGTATAATTGAGCCAAAATCAAAGTTTC
74219732 ATGTGTAT
1 ATGTGTAT
74219740 TGTTGTGCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 33 0.97
32 1 0.03
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (31 bp):
ATGTGTATAATTGAGCCAAAATCAAAGTTTC
Found at i:74225058 original size:41 final size:42
Alignment explanation
Indices: 74225001--74225080 Score: 153
Period size: 41 Copynumber: 1.9 Consensus size: 42
74224991 TCGCATTGCC
74225001 CGTTTTGGCCTTGGTTATATAA-TTTTACTATAATACGTTCT
1 CGTTTTGGCCTTGGTTATATAATTTTTACTATAATACGTTCT
74225042 CGTTTTGGCCTTGGTTATATAATTTTTACTATAATACGT
1 CGTTTTGGCCTTGGTTATATAATTTTTACTATAATACGT
74225081 ATCCGAGGGC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
41 22 0.58
42 16 0.42
ACGTcount: A:0.23, C:0.14, G:0.15, T:0.49
Consensus pattern (42 bp):
CGTTTTGGCCTTGGTTATATAATTTTTACTATAATACGTTCT
Found at i:74225707 original size:21 final size:23
Alignment explanation
Indices: 74225673--74225718 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
74225663 TATTTTAAAA
74225673 ATATTTATATTAA-TTTCAATTTT
1 ATATTTATATTAATTTTC-ATTTT
74225696 ATATTTA-A-TAATTTTCATTTT
1 ATATTTATATTAATTTTCATTTT
74225717 AT
1 AT
74225719 TAAAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 10 0.45
22 5 0.23
23 7 0.32
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (23 bp):
ATATTTATATTAATTTTCATTTT
Found at i:74233385 original size:28 final size:28
Alignment explanation
Indices: 74233344--74233404 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
74233334 TGGCCGGCCT
* *
74233344 TATATCATTTAGGCGGCAGAACAGACCA
1 TATATCATTCAGGCAGCAGAACAGACCA
* * *
74233372 TATATCATTCAGGCAGTAGATCCGACCA
1 TATATCATTCAGGCAGCAGAACAGACCA
74233400 TATAT
1 TATAT
74233405 AAAAGCTAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (28 bp):
TATATCATTCAGGCAGCAGAACAGACCA
Found at i:74249124 original size:18 final size:18
Alignment explanation
Indices: 74249101--74249135 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
74249091 TGTTAATATA
74249101 GGAGTAAATCCCTGATTG
1 GGAGTAAATCCCTGATTG
*
74249119 GGAGTAAATCCTTGATT
1 GGAGTAAATCCCTGATT
74249136 AGGATTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (18 bp):
GGAGTAAATCCCTGATTG
Found at i:74258896 original size:18 final size:18
Alignment explanation
Indices: 74258869--74258903 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
74258859 GATAAATCCT
74258869 AATCAAGGATTTACTCCC
1 AATCAAGGATTTACTCCC
*
74258887 AATCAGGGATTTACTCC
1 AATCAAGGATTTACTCC
74258904 TATATTAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (18 bp):
AATCAAGGATTTACTCCC
Found at i:74260574 original size:16 final size:17
Alignment explanation
Indices: 74260543--74260576 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
74260533 GTATCCTCTC
74260543 TGTAAACAACCTTTCCT
1 TGTAAACAACCTTTCCT
*
74260560 TGTAAA-AATCTTTCCT
1 TGTAAACAACCTTTCCT
74260576 T
1 T
74260577 TAATAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (17 bp):
TGTAAACAACCTTTCCT
Found at i:74262014 original size:23 final size:23
Alignment explanation
Indices: 74261979--74262029 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 23
74261969 TATTATTTTT
74261979 ATATAAAAATAAAT-T-TAAAAA
1 ATATAAAAATAAATATATAAAAA
*
74262000 ATATAATAAATTAAATATATTAAAA
1 ATATAA-AAA-TAAATATATAAAAA
74262025 ATATA
1 ATATA
74262030 TTTATATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 6 0.24
22 3 0.12
23 5 0.20
24 1 0.04
25 10 0.40
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
ATATAAAAATAAATATATAAAAA
Found at i:74262025 original size:27 final size:28
Alignment explanation
Indices: 74261985--74262075 Score: 80
Period size: 27 Copynumber: 3.3 Consensus size: 28
74261975 TTTTATATAA
*
74261985 AAATAAATTTAAAAAATATAATA-AATT
1 AAATAAATTAAAAAAATATAATATAATT
* * * *
74262012 AAATATATTAAAAATATAT-TTATATTT
1 AAATAAATTAAAAAAATATAATATAATT
* *
74262039 AAATAACATTAAAATAAATATAATTTAA-C
1 AAATAA-ATTAAAA-AAATATAATATAATT
74262068 AAATAAAT
1 AAATAAAT
74262076 ACCTCTAAAC
Statistics
Matches: 49, Mismatches: 11, Indels: 7
0.73 0.16 0.10
Matches are distributed among these distances:
26 2 0.04
27 24 0.49
28 9 0.18
29 11 0.22
30 3 0.06
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (28 bp):
AAATAAATTAAAAAAATATAATATAATT
Found at i:74265462 original size:30 final size:31
Alignment explanation
Indices: 74265408--74265473 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 31
74265398 ACCAAAAAAG
74265408 ATTAAATTAAATAGTTTATAATTTTTAAGGT
1 ATTAAATTAAATAGTTTATAATTTTTAAGGT
* *
74265439 ATTAAATTAAAT-TTTTATCATTTTTAAGGT
1 ATTAAATTAAATAGTTTATAATTTTTAAGGT
74265469 ATTAA
1 ATTAA
74265474 TTGTACCCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
30 21 0.64
31 12 0.36
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.50
Consensus pattern (31 bp):
ATTAAATTAAATAGTTTATAATTTTTAAGGT
Found at i:74266277 original size:29 final size:29
Alignment explanation
Indices: 74266222--74266278 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
74266212 CCTCATCAAA
* *
74266222 TTAATTAATTAATTATTAAATAGATTAAT
1 TTAATTAATTAATTATTAAAAAAATTAAT
74266251 TTAATTAA-TATATTATTAAAAAAATTAA
1 TTAATTAATTA-ATTATTAAAAAAATTAA
74266279 ATACGGCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 23 0.92
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (29 bp):
TTAATTAATTAATTATTAAAAAAATTAAT
Found at i:74268796 original size:22 final size:22
Alignment explanation
Indices: 74268769--74268820 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
74268759 TTAGTTGTTG
74268769 AGTTATTTAATGCAATTTTTGT
1 AGTTATTTAATGCAATTTTTGT
74268791 AGTTATTTAATGCAATTTTTGT
1 AGTTATTTAATGCAATTTTTGT
*
74268813 AGTGATTT
1 AGTTATTT
74268821 GTGATTGTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.27, C:0.04, G:0.15, T:0.54
Consensus pattern (22 bp):
AGTTATTTAATGCAATTTTTGT
Found at i:74273839 original size:45 final size:45
Alignment explanation
Indices: 74273761--74273855 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 45
74273751 TTGTTGATGA
* * * * *
74273761 ATTTCGTTAAATTAAATTTTATAATATTGTAAATTAGTTCGAGCT
1 ATTTTGTTAAATCAAATTTTATAATAATATAAATTAATTCGAGCT
*
74273806 GTTTTGTTAAATCAAA-TTTATAATAAATATAAATTAATTCGAGCT
1 ATTTTGTTAAATCAAATTTTATAAT-AATATAAATTAATTCGAGCT
74273851 ATTTT
1 ATTTT
74273856 AAGATCATTG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 8 0.19
45 34 0.81
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.46
Consensus pattern (45 bp):
ATTTTGTTAAATCAAATTTTATAATAATATAAATTAATTCGAGCT
Found at i:74276472 original size:21 final size:22
Alignment explanation
Indices: 74276446--74276492 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
74276436 CTCTGCTCAA
*
74276446 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
74276467 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
74276489 ACTC
1 ACTC
74276493 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:74279945 original size:24 final size:25
Alignment explanation
Indices: 74279899--74279945 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
74279889 AAGATTATAT
* *
74279899 ATAAATTTTTTATTTAATTTAATAC
1 ATAAATTTTTAATTTAATATAATAC
*
74279924 ATAAA-TTTTAATTTAGTATAAT
1 ATAAATTTTTAATTTAATATAAT
74279946 TATACATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (25 bp):
ATAAATTTTTAATTTAATATAATAC
Found at i:74280458 original size:31 final size:30
Alignment explanation
Indices: 74280397--74280473 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 30
74280387 TTTTCTTTAA
74280397 ATATATAAATTGAATCAAAATCAAAATTTT
1 ATATATAAATTGAATCAAAATCAAAATTTT
* ** *
74280427 ATATATACATTGAAATCGCAATCAAAGTTTT
1 ATATATAAATTG-AATCAAAATCAAAATTTT
* *
74280458 ATTTATATATTTGAAT
1 ATATATA-AATTGAAT
74280474 TATGATCAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
30 11 0.29
31 24 0.63
32 3 0.08
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.40
Consensus pattern (30 bp):
ATATATAAATTGAATCAAAATCAAAATTTT
Found at i:74280532 original size:27 final size:30
Alignment explanation
Indices: 74280478--74280532 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
74280468 TTGAATTATG
* *
74280478 ATCAAAGTTTCATGTGTATAATTGCACAAA
1 ATCAAAGTTTCATGTATATAAATGCACAAA
74280508 ATCAAAGTTT-ATGTAT-TAAAT-CACA
1 ATCAAAGTTTCATGTATATAAATGCACA
74280533 CATTAAATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 4 0.17
28 4 0.17
29 5 0.22
30 10 0.43
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.35
Consensus pattern (30 bp):
ATCAAAGTTTCATGTATATAAATGCACAAA
Found at i:74281015 original size:28 final size:28
Alignment explanation
Indices: 74280970--74281026 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
74280960 ACCTAATAAT
* * * *
74280970 AGAGGTTTTGATGTAAAATTATATTTTA
1 AGAGGGTTTGACGAAAAATTACATTTTA
74280998 AGAGGGTTTGACGAAAAATTACATTTTA
1 AGAGGGTTTGACGAAAAATTACATTTTA
74281026 A
1 A
74281027 AAATTCAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.39
Consensus pattern (28 bp):
AGAGGGTTTGACGAAAAATTACATTTTA
Found at i:74286101 original size:33 final size:33
Alignment explanation
Indices: 74286064--74286128 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
74286054 AATCTTCATA
74286064 AATAATATTTAGATTGGTTTAAAATGATTGATG
1 AATAATATTTAGATTGGTTTAAAATGATTGATG
74286097 AATAATATTTAGATTGGTTTAAAATGATTGAT
1 AATAATATTTAGATTGGTTTAAAATGATTGAT
74286129 TAAGCTATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (33 bp):
AATAATATTTAGATTGGTTTAAAATGATTGATG
Found at i:74288435 original size:8 final size:8
Alignment explanation
Indices: 74288422--74288456 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
74288412 GAAACCAATT
74288422 TTTATATA
1 TTTATATA
74288430 TTTATATA
1 TTTATATA
74288438 TTTATATA
1 TTTATATA
*
74288446 TTAATA-A
1 TTTATATA
74288453 TTTA
1 TTTA
74288457 AATGTATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 4 0.16
8 21 0.84
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
TTTATATA
Found at i:74292463 original size:20 final size:21
Alignment explanation
Indices: 74292424--74292464 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
74292414 TTATTAGGTA
74292424 TAATAAGATAAAATAAAAATT
1 TAATAAGATAAAATAAAAATT
74292445 TAATAA-ATATAAA-AAAAATT
1 TAATAAGATA-AAATAAAAATT
74292465 ATGTTGTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (21 bp):
TAATAAGATAAAATAAAAATT
Found at i:74293017 original size:43 final size:43
Alignment explanation
Indices: 74292956--74293098 Score: 198
Period size: 43 Copynumber: 3.3 Consensus size: 43
74292946 GCGTCGCAAA
*
74292956 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTCCAC
* * * *
74292999 AAACGCCGCTAAAGACCATGATCTTTAGCGTCGCTTTTTCTAA
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTCCAC
* * * *
74293042 AAACGCCGCTATATATCA-GACCTTTAGCGGCGCTTTTTTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTCCAC
74293084 AAACGCCGCTAAAGA
1 AAACGCCGCTAAAGA
74293099 ATATAAAATT
Statistics
Matches: 85, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 32 0.38
43 53 0.62
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTCCAC
Found at i:74294135 original size:45 final size:45
Alignment explanation
Indices: 74294071--74294161 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
74294061 AGAATAATAT
74294071 GTAAGTGCATTGATTCCTCCCAAATTCATCAGGACCAACACTCCA
1 GTAAGTGCATTGATTCCTCCCAAATTCATCAGGACCAACACTCCA
74294116 GTAAGTGCATTGATTCCTCCCAAATTCATCAGGACCAACACTCCA
1 GTAAGTGCATTGATTCCTCCCAAATTCATCAGGACCAACACTCCA
74294161 G
1 G
74294162 CAACAGTCTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (45 bp):
GTAAGTGCATTGATTCCTCCCAAATTCATCAGGACCAACACTCCA
Found at i:74299068 original size:11 final size:11
Alignment explanation
Indices: 74299052--74299079 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
74299042 GTGTATCTCT
74299052 GAAAATCCATC
1 GAAAATCCATC
74299063 GAAAATCCATC
1 GAAAATCCATC
74299074 GAAAAT
1 GAAAAT
74299080 TCCAAGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.21, G:0.11, T:0.18
Consensus pattern (11 bp):
GAAAATCCATC
Found at i:74306593 original size:12 final size:12
Alignment explanation
Indices: 74306564--74306595 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
74306554 GTGTATCTCT
74306564 GAAAA-TCCATC
1 GAAAATTCCATC
74306575 G-AAATTCCATC
1 GAAAATTCCATC
74306586 GAAAATTCCA
1 GAAAATTCCA
74306596 AGAAATTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 3 0.16
11 8 0.42
12 8 0.42
ACGTcount: A:0.44, C:0.25, G:0.09, T:0.22
Consensus pattern (12 bp):
GAAAATTCCATC
Found at i:74308066 original size:46 final size:46
Alignment explanation
Indices: 74307999--74308166 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 46
74307989 TAACCCGCCC
* *
74307999 ATAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCT
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
* *
74308045 ATAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACATCT
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATCT
* * * * * * *
74308095 CT---CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
74308138 ATAAGTGAACTCGGACTCAACTCAACGAG
1 ATAAGTGAACTCGGACTCAACTCAACGAG
74308167 TTGGATGCTC
Statistics
Matches: 98, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
46 54 0.55
47 25 0.26
48 1 0.01
49 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
Found at i:74313149 original size:46 final size:45
Alignment explanation
Indices: 74312979--74313147 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 45
74312969 TGTAACCCGC
* *
74312979 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* * *
74313025 CCATAAGTGAACTCGGACTAAACTCAACAAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* * *
74313071 ACACT--CTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
74313117 CCATAAGTGAACTAGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
74313148 TTGGATGCTC
Statistics
Matches: 99, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 4 0.04
46 84 0.85
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:74316446 original size:17 final size:17
Alignment explanation
Indices: 74316424--74316463 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
74316414 GGGAGAGACT
74316424 CAGTTTCCACAAAATTC
1 CAGTTTCCACAAAATTC
74316441 CAGTTTCCACAAAATTC
1 CAGTTTCCACAAAATTC
74316458 CAGTTT
1 CAGTTT
74316464 GCAACAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.33
Consensus pattern (17 bp):
CAGTTTCCACAAAATTC
Found at i:74316472 original size:18 final size:17
Alignment explanation
Indices: 74316424--74316472 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
74316414 GGGAGAGACT
*
74316424 CAGTTTCCACAAAATTC
1 CAGTTTCAACAAAATTC
*
74316441 CAGTTTCCACAAAATTC
1 CAGTTTCAACAAAATTC
74316458 CAGTTTGCAACAAAA
1 CAGTTT-CAACAAAA
74316473 GGGTTTTTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 23 0.77
18 7 0.23
ACGTcount: A:0.39, C:0.27, G:0.08, T:0.27
Consensus pattern (17 bp):
CAGTTTCAACAAAATTC
Found at i:74316882 original size:8 final size:8
Alignment explanation
Indices: 74316864--74316936 Score: 71
Period size: 7 Copynumber: 8.9 Consensus size: 8
74316854 ATATTAAATA
*
74316864 TTAAATAT
1 TTAAATTT
74316872 TTAAATTT
1 TTAAATTT
74316880 TT-AATTT
1 TTAAATTT
74316887 TT-AATTT
1 TTAAATTT
74316894 TT-AATTT
1 TTAAATTT
74316901 TTAAAATTTT
1 TT-AAA-TTT
74316911 TTGAAGATTT
1 TT-AA-ATTT
74316921 TTATAATTT
1 TTA-AATTT
74316930 TTAAATT
1 TTAAATT
74316937 ATCATATAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
7 21 0.36
8 13 0.22
9 10 0.17
10 13 0.22
11 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (8 bp):
TTAAATTT
Found at i:74316889 original size:15 final size:15
Alignment explanation
Indices: 74316857--74316911 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 15
74316847 GACTAAAATA
* * *
74316857 TTAAATATTAAATAT
1 TTAAATTTTTAATTT
74316872 TTAAATTTTTAATTT
1 TTAAATTTTTAATTT
74316887 TT-AATTTTTAATTT
1 TTAAATTTTTAATTT
74316901 TTAAAATTTTT
1 TT-AAATTTTT
74316912 TGAAGATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
14 14 0.40
15 14 0.40
16 7 0.20
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTAAATTTTTAATTT
Found at i:74317825 original size:29 final size:30
Alignment explanation
Indices: 74317783--74317839 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
74317773 ATTGATGTTT
74317783 TTTAGGGTTTAGGG-TTTTAGGGGTTATAA
1 TTTAGGGTTTAGGGTTTTTAGGGGTTATAA
* *
74317812 TTTAGTGTTTAGGGTTTTTAGGGTTTAT
1 TTTAGGGTTTAGGGTTTTTAGGGGTTAT
74317840 GGGTTTAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 13 0.52
30 12 0.48
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.51
Consensus pattern (30 bp):
TTTAGGGTTTAGGGTTTTTAGGGGTTATAA
Found at i:74320635 original size:46 final size:46
Alignment explanation
Indices: 74320568--74320868 Score: 404
Period size: 46 Copynumber: 6.7 Consensus size: 46
74320558 TGGCAACCTG
* *
74320568 TGTGTAAGACCATGGTTGAAAGATACCACGACAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
74320614 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
74320652 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
74320698 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
74320744 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
74320790 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
74320836 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
74320869 TCACGTCAAA
Statistics
Matches: 231, Mismatches: 15, Indels: 18
0.88 0.06 0.07
Matches are distributed among these distances:
38 36 0.16
41 2 0.01
43 2 0.01
45 1 0.00
46 190 0.82
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:74320654 original size:84 final size:84
Alignment explanation
Indices: 74320520--74320824 Score: 475
Period size: 84 Copynumber: 3.5 Consensus size: 84
74320510 GTGTGCTCTT
74320520 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTT
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTT
* *
74320585 GAAAGATACCACGACAACC
66 GAAAGATACCATGGCAACC
74320604 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTT
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTT
74320669 GAAAGATACCATGGCAACC
66 GAAAGATACCATGGCAACC
74320688 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G-TGTGTAAGA
*
74320753 CCATGGTTGAAAGATACCATGGCAACG
58 CCATGGTTGAAAGATACCATGGCAACC
* * **
74320780 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
74320825 ATGACAGAAA
Statistics
Matches: 206, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
84 128 0.62
89 1 0.00
91 1 0.00
92 76 0.37
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (84 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTT
GAAAGATACCATGGCAACC
Found at i:74321174 original size:23 final size:25
Alignment explanation
Indices: 74321130--74321175 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
74321120 ATAAATATAC
*
74321130 ATAAAATATATGGAAATGATGAAGT
1 ATAAAATATATGGAAATAATGAAGT
*
74321155 ATAAAATAT-T-GATATAATGAA
1 ATAAAATATATGGAAATAATGAA
74321176 ATGAATGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.47
24 1 0.05
25 9 0.47
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.30
Consensus pattern (25 bp):
ATAAAATATATGGAAATAATGAAGT
Found at i:74321659 original size:41 final size:41
Alignment explanation
Indices: 74321596--74321724 Score: 197
Period size: 41 Copynumber: 3.1 Consensus size: 41
74321586 GTTATATGAC
* *
74321596 TTTTAGCGGCGTTTTA-TCGAAAGTGCAGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACT-GAAAGCGCCGCTAATGCTCTGGT
74321637 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGT
** *
74321678 TTTTAGTAGTGTTTTACTGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGT
74321719 TTTTAG
1 TTTTAG
74321725 TTGGTAAAAC
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 81 0.99
42 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGT
Found at i:74324479 original size:13 final size:13
Alignment explanation
Indices: 74324461--74324485 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74324451 AACTTTTTTC
74324461 ATAAATAAATTTA
1 ATAAATAAATTTA
74324474 ATAAATAAATTT
1 ATAAATAAATTT
74324486 TCTAGTATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAAATAAATTTA
Found at i:74327887 original size:13 final size:13
Alignment explanation
Indices: 74327869--74327895 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74327859 TGGAACGTTA
74327869 ATTTAAATGGTTG
1 ATTTAAATGGTTG
74327882 ATTTAAATGGTTG
1 ATTTAAATGGTTG
74327895 A
1 A
74327896 ATTTTATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (13 bp):
ATTTAAATGGTTG
Found at i:74328375 original size:31 final size:29
Alignment explanation
Indices: 74328310--74328381 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
74328300 CTTAAGTTAT
*
74328310 ATTTTAGTCACTTATGTTTGAAATGTTAC
1 ATTTTAGTCACTTATGTTTGAAATGTAAC
***
74328339 ATTTTAGTCACTTATGTTATCGTGTTGTAAC
1 ATTTTAGTCACTTATGTT-T-GAAATGTAAC
74328370 ATTTTAGTCACT
1 ATTTTAGTCACT
74328382 GAGCTATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 18 0.49
30 1 0.03
31 18 0.49
ACGTcount: A:0.25, C:0.12, G:0.14, T:0.49
Consensus pattern (29 bp):
ATTTTAGTCACTTATGTTTGAAATGTAAC
Found at i:74329663 original size:2 final size:2
Alignment explanation
Indices: 74329658--74329683 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
74329648 TGCCCAAAAA
74329658 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
74329684 CATTTAGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74333067 original size:9 final size:9
Alignment explanation
Indices: 74333055--74333107 Score: 54
Period size: 10 Copynumber: 5.7 Consensus size: 9
74333045 TTTTAACATT
74333055 TTTTTAATA
1 TTTTTAATA
74333064 TTTTTAATA
1 TTTTTAATA
*
74333073 TATTTTGATAA
1 T-TTTTAAT-A
*
74333084 TTTTTATTTA
1 TTTTTA-ATA
74333094 TTTTTAA-A
1 TTTTTAATA
74333102 TTTTTA
1 TTTTTA
74333108 GAGCTATTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
8 7 0.19
9 10 0.27
10 17 0.46
11 3 0.08
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (9 bp):
TTTTTAATA
Found at i:74333078 original size:19 final size:20
Alignment explanation
Indices: 74333045--74333107 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
74333035 TTTGATTTTA
* *
74333045 TTTTAACATTTTTTTAATAT
1 TTTTAATATATTTTTAATAT
*
74333065 TTTTAATATA-TTTTGATAAT
1 TTTTAATATATTTTTAAT-AT
*
74333085 TTTT-ATTTATTTTTAA-AT
1 TTTTAATATATTTTTAATAT
74333103 TTTTA
1 TTTTA
74333108 GAGCTATTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
18 6 0.17
19 10 0.29
20 19 0.54
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTAATATATTTTTAATAT
Found at i:74335127 original size:16 final size:17
Alignment explanation
Indices: 74335095--74335127 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
74335085 AACATAGCAA
*
74335095 ATAATATGTTATTATTG
1 ATAATATGTTATCATTG
74335112 ATAATAT-TTATCATTG
1 ATAATATGTTATCATTG
74335128 CAACATCGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (17 bp):
ATAATATGTTATCATTG
Found at i:74337234 original size:20 final size:18
Alignment explanation
Indices: 74337209--74337245 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
74337199 ATTGCTAAGT
74337209 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
74337229 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
74337246 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:74337862 original size:46 final size:46
Alignment explanation
Indices: 74337802--74337977 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
74337792 TGGTTGAGCA
* * *
74337802 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATG
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
* * * *
74337848 TTCGAGCTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTA-ACTAGGCA
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-AGA--A--CG
** *
74337895 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
*
74337941 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
74337978 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 3 0.03
46 61 0.59
47 26 0.25
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
Found at i:74337958 original size:93 final size:93
Alignment explanation
Indices: 74337799--74337969 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
74337789 GGATGGTTGA
* **
74337799 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTTCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAGCTCATTGAGT
74337864 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
74337892 GCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAGCTCATTGAGT
74337957 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
74337970 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAGCTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74343195 original size:21 final size:22
Alignment explanation
Indices: 74343169--74343214 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
74343159 ATCTGCTCAA
* *
74343169 ACTCCACCTGTTTTGGAGTA-C
1 ACTCCACCTGCTGTGGAGTATC
74343190 ACTCCACCTGCTGTGGAGTATC
1 ACTCCACCTGCTGTGGAGTATC
74343212 ACT
1 ACT
74343215 TGTCTGAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (22 bp):
ACTCCACCTGCTGTGGAGTATC
Found at i:74351534 original size:20 final size:20
Alignment explanation
Indices: 74351509--74351573 Score: 87
Period size: 20 Copynumber: 3.3 Consensus size: 20
74351499 ATTTGATGTA
74351509 TTATATTTTTTAATTTATTT
1 TTATATTTTTTAATTTATTT
****
74351529 TTATA-TAAAAAATTTATTT
1 TTATATTTTTTAATTTATTT
74351548 TTATATTTTTTAATTTATTT
1 TTATATTTTTTAATTTATTT
74351568 TTATAT
1 TTATAT
74351574 AACTTATTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
19 15 0.42
20 21 0.58
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTATATTTTTTAATTTATTT
Found at i:74353086 original size:131 final size:130
Alignment explanation
Indices: 74352712--74353197 Score: 424
Period size: 131 Copynumber: 3.7 Consensus size: 130
74352702 TAGAAAATAC
* * * * * * * *
74352712 GAGTGAAATTCTGAAGGGATCTTCGATTGTTTTGAGCAAATGAA-AAATCGCAACCCAGCACGAT
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAA-CAAGAAATTGCAACCCAACACGTT
* * * * * * ** * * *
74352776 AAGGCTCGATTCTCAAATCGCCAAACATCGAACATCGCCTTCGTTTTGAAAGGTTTTTAATAA-A
65 AGGGCACGATTCCCGAATTGCCAAATATCGAGTATCACCTTCGTTTT-AAGGGATTTTAA-AAGA
74352840 CAT
128 CAT
* *** * * * *** * *
74352843 GAATGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAACAAGAAAACACAACCCAGCACGATA
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTTA
* * * * * * * *
74352908 GGGCAAGATTCCCGAATTGTCAAACACCGAGTATTACCTTCGTTTTAATGGATTTCTAGAAGACC
66 GGGCACGATTCCCGAATTGCCAAATATCGAGTATCACCTTCGTTTTAAGGGATTT-TAAAAGACA
74352973 T
130 T
* * * *
74352974 GAGTGAAATTTTGAAGGGATATTTGATTATTTTAAACAAACGAGAAATTGCAACCTAACACGTTA
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTTA
* *
74353039 GGGCACGATTCCACGAATTGCCAAATATCGCA-TATCGCCTTCG-TTTAAGGGATTTTAAAAGAT
66 GGGCACGATTCC-CGAATTGCCAAATATCG-AGTATCACCTTCGTTTTAAGGGATTTTAAAAGAC
74353102 AT
129 AT
* * *
74353104 GAGTGAAATTTTGAAGTGATATTCGATTATTTTGAGC-AACTACGAAATTGCAACCCAACACGTT
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAAC-AAGAAATTGCAACCCAACACGTT
*
74353168 AGGGCACGATTCCGCAAATTGCCAAATATC
65 AGGGCACGATTCC-CGAATTGCCAAATATC
74353198 AAATCTCGTC
Statistics
Matches: 288, Mismatches: 61, Indels: 13
0.80 0.17 0.04
Matches are distributed among these distances:
129 3 0.01
130 99 0.34
131 162 0.56
132 23 0.08
133 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (130 bp):
GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTTA
GGGCACGATTCCCGAATTGCCAAATATCGAGTATCACCTTCGTTTTAAGGGATTTTAAAAGACAT
Found at i:74354247 original size:31 final size:31
Alignment explanation
Indices: 74354204--74354267 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
74354194 CCTTTTCATA
74354204 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
74354235 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
74354266 TT
1 TT
74354268 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:74354535 original size:23 final size:23
Alignment explanation
Indices: 74354481--74354646 Score: 253
Period size: 23 Copynumber: 7.1 Consensus size: 23
74354471 CCTAGCCTCT
*
74354481 TTTAGTAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74354503 TTTTTAATAACTGGGGCATAAGCCC
1 --TTTAATAACTGGGGCATAAGCCC
*
74354528 TTTAATAACTGAGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
74354551 TTTTGATAACTGGGGCATAATCCC
1 -TTTAATAACTGGGGCATAAGCCC
74354575 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74354598 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
74354621 TTTAATAATTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74354644 TTT
1 TTT
74354647 TTCACTTCCT
Statistics
Matches: 132, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
23 91 0.69
24 35 0.27
25 6 0.05
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:74354560 original size:47 final size:47
Alignment explanation
Indices: 74354481--74354647 Score: 266
Period size: 47 Copynumber: 3.6 Consensus size: 47
74354471 CCTAGCCTCT
*
74354481 TTTAGTAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
* * *
74354528 TTTAATAACTGAGGCATAAGCCCTTTTGATAACTGGGGCATAATCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
74354575 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
74354621 TTTAATAATTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
74354648 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
46 43 0.39
47 61 0.55
48 6 0.05
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:74354595 original size:70 final size:69
Alignment explanation
Indices: 74354460--74354646 Score: 261
Period size: 70 Copynumber: 2.7 Consensus size: 69
74354450 GCTTTATCAT
*
74354460 ATAACTGGAGGCCT-AGCCTCTTTTAGTAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATA
1 ATAACT-GAGGCATAAGCC-CTTTTA-TAACTGGGGCATAAGCCC--TTTAATAACTGGGGCATA
74354523 AGCCCTTTA
61 AGCCCTTTA
*
74354532 ATAACTGAGGCATAAGCCCTTTTGATAACTGGGGCATAATCCCTTTAATAACTGGGGCATAAGCC
1 ATAACTGAGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
74354597 CTTTA
65 CTTTA
* * *
74354602 ATAACTGGGGCATAAGCCCTTTAATAATTGGGGCATAAGCCCTTT
1 ATAACTGAGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTT
74354647 TTCACTTCCT
Statistics
Matches: 106, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
69 20 0.19
70 48 0.45
71 22 0.21
72 16 0.15
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (69 bp):
ATAACTGAGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
TTTA
Found at i:74354722 original size:20 final size:20
Alignment explanation
Indices: 74354697--74354763 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
74354687 TTATGAATAC
*
74354697 ATCATGTGCATGTCATACAT
1 ATCATGTGCATATCATACAT
74354717 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74354737 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74354757 ACCATGT
1 ATCATGT
74354764 TTTTCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:74355989 original size:18 final size:18
Alignment explanation
Indices: 74355966--74356000 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
74355956 TAGGGAAGAA
74355966 AAAACAAAAGAGAAAACT
1 AAAACAAAAGAGAAAACT
*
74355984 AAAACAAATGAGAAAAC
1 AAAACAAAAGAGAAAAC
74356001 AGCACAGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.71, C:0.11, G:0.11, T:0.06
Consensus pattern (18 bp):
AAAACAAAAGAGAAAACT
Found at i:74356821 original size:16 final size:16
Alignment explanation
Indices: 74356800--74356835 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
74356790 AAGTTAACAG
74356800 AATATATGATA-ATAAA
1 AATATATGATACA-AAA
74356816 AATATATGATACAAAA
1 AATATATGATACAAAA
74356832 AATA
1 AATA
74356836 CATAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 18 0.95
17 1 0.05
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (16 bp):
AATATATGATACAAAA
Found at i:74356831 original size:14 final size:15
Alignment explanation
Indices: 74356794--74356849 Score: 53
Period size: 14 Copynumber: 3.8 Consensus size: 15
74356784 ATTTAAAAGT
*
74356794 TAACAGAATATATGA
1 TAACAAAATATATGA
*
74356809 TAATAAAAATATATGA
1 TAA-CAAAATATATGA
* *
74356825 T-ACAAAAAATA-CA
1 TAACAAAATATATGA
74356838 TAACAAAATATA
1 TAACAAAATATA
74356850 ATGCCCCAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
13 2 0.06
14 16 0.48
15 4 0.12
16 11 0.33
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.25
Consensus pattern (15 bp):
TAACAAAATATATGA
Found at i:74359076 original size:44 final size:44
Alignment explanation
Indices: 74359013--74359811 Score: 1055
Period size: 44 Copynumber: 18.2 Consensus size: 44
74359003 CAGGAACACC
* * *
74359013 AATCTGTTATTTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
*
74359057 AATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * *
74359101 AATCTGCTATATTCGATCTACCCTCTGACAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* ** *
74359145 AATCTGCTATCTTCGATCTGCCCTCTAACAATACAGAGACACCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
*
74359189 AATCTGCTATATTCGATCTGCTC-CTTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTC-TGCCAATACAGAGACGCCA
* * * *
74359233 AATCTGTTATCTTCGATCTGCTCTCCGCTAATACAGAGACACCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * * *
74359277 AATCTGCTATCTTCAATTTACTCTCCGCCAGTACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
** *
74359321 AATCTGCTTATCTTTAATCTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGC-TATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
74359366 AATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACGTCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * *
74359410 AATCTGTTATCTTCGATCTGCTCTCTGTCAACACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
*
74359454 AATCTGCTATCTTCGATCTGCTCTCTACCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
74359498 AATCTGCTATCTTCGATCTGCTCTCCGCTAATACAGAAACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
74359542 AATCTGCTATCTTCGATTTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
74359586 AATCTGCTATCTTCGATCTGCTCTCTGTCAACACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
74359630 AATCTGCTATCTTTGATTTGCTCTCTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * * *
74359674 AATCTGCTATCTT-AATCTGCCCCCTGCCAATACAAAGACGTCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * * *
74359717 AATCTGTTATCTTCGATCTACTCTCTGTCAACACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
74359761 AATCTGCTATCTTCGATCTACTCTCCGCCAATACA-AGAACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAG-ACGCCA
74359805 AATCTGC
1 AATCTGC
74359812 AGGATTCGCC
Statistics
Matches: 662, Mismatches: 88, Indels: 10
0.87 0.12 0.01
Matches are distributed among these distances:
43 39 0.06
44 582 0.88
45 41 0.06
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.28
Consensus pattern (44 bp):
AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
Found at i:74371810 original size:130 final size:130
Alignment explanation
Indices: 74371457--74371813 Score: 366
Period size: 130 Copynumber: 2.8 Consensus size: 130
74371447 ATGAAAACCT
* * *** * * *
74371457 AAAGGAATATTCGATTGTTTTGAACAAACGAGAAAACACAACCCAGCACGATAGGGCATGATTCC
1 AAAGG-ATATTCGATTATTTTAAACAAACGAGAAATTGCAACCCAACACGTTAGGGCAAGATTCC
* * * * * * * * **
74371522 -CGAATTGTCAAACACCTAGTA---CCTTCGTTTTAAAGGATTTCTAGAAGACCTGAGTGAAATT
65 ACGAATTGCCAAATATCAAATATCGCCTTCG-TTTAAGGGATTT-TAAAATATATGAGTGAAATT
74371583 TTG
128 TTG
* * *
74371586 AAGGGATATTTGATTATTTTAAACAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCA
1 AAAGGATATTCGATTATTTTAAACAAACGAGAAATTGCAACCCAACACGTTAGGGCAAGATTCCA
**
74371651 CGAATTGCCAAATATCGCATATCGCCTTCGTTTAAGGGATTTTAAAATATATGAGTGAAATTTTG
66 CGAATTGCCAAATATCAAATATCGCCTTCGTTTAAGGGATTTTAAAATATATGAGTGAAATTTTG
* * *
74371716 AAATGATATTCGATTATTTTGAGC-AACTGTA-AAATTGCAACCCAACACGTTAGGGCAAGATTC
1 AAAGGATATTCGATTATTTTAAACAAAC-G-AGAAATTGCAACCCAACACGTTAGGGCAAGATTC
* * *
74371779 CGCGAATTGCCAAATATCAAATCTCGTCTTCGTTT
64 CACGAATTGCCAAATATCAAATATCGCCTTCGTTT
74371814 TAAAGAATTT
Statistics
Matches: 190, Mismatches: 32, Indels: 11
0.82 0.14 0.05
Matches are distributed among these distances:
128 50 0.26
129 22 0.12
130 100 0.53
131 12 0.06
132 6 0.03
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (130 bp):
AAAGGATATTCGATTATTTTAAACAAACGAGAAATTGCAACCCAACACGTTAGGGCAAGATTCCA
CGAATTGCCAAATATCAAATATCGCCTTCGTTTAAGGGATTTTAAAATATATGAGTGAAATTTTG
Found at i:74372355 original size:16 final size:16
Alignment explanation
Indices: 74372334--74372369 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
74372324 AAGTTAACAG
74372334 AATATATGATA-ATAAA
1 AATATATGATACA-AAA
74372350 AATATATGATACAAAA
1 AATATATGATACAAAA
74372366 AATA
1 AATA
74372370 CATAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 18 0.95
17 1 0.05
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (16 bp):
AATATATGATACAAAA
Found at i:74372365 original size:14 final size:15
Alignment explanation
Indices: 74372328--74372383 Score: 53
Period size: 14 Copynumber: 3.8 Consensus size: 15
74372318 ATTTAAAAGT
*
74372328 TAACAGAATATATGA
1 TAACAAAATATATGA
*
74372343 TAATAAAAATATATGA
1 TAA-CAAAATATATGA
* *
74372359 T-ACAAAAAATA-CA
1 TAACAAAATATATGA
74372372 TAACAAAATATA
1 TAACAAAATATA
74372384 ATGCCCCAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
13 2 0.06
14 16 0.48
15 4 0.12
16 11 0.33
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.25
Consensus pattern (15 bp):
TAACAAAATATATGA
Found at i:74374871 original size:41 final size:41
Alignment explanation
Indices: 74374826--74374930 Score: 131
Period size: 41 Copynumber: 2.6 Consensus size: 41
74374816 AAAATGATTT
* * *
74374826 TTTTGCGGCATTTTTTTCATAAACG-CTGTTAATAATTGACC
1 TTTTGCGGCGTTTTTATCATAAACGTC-GCTAATAATTGACC
* * **
74374867 TTTTGCGGCGTATTTCTCATAAACGTCGCTAATGCTTGACC
1 TTTTGCGGCGTTTTTATCATAAACGTCGCTAATAATTGACC
74374908 TTTTGCGGCGTTTTTATCATAAA
1 TTTTGCGGCGTTTTTATCATAAA
74374931 TTCTGCTATA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 54 0.98
42 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (41 bp):
TTTTGCGGCGTTTTTATCATAAACGTCGCTAATAATTGACC
Found at i:74375910 original size:16 final size:18
Alignment explanation
Indices: 74375879--74375913 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
74375869 AAAAAAATTA
74375879 TATATAATAAATGAATAT
1 TATATAATAAATGAATAT
74375897 TATAT-ATAAA-GAATAT
1 TATATAATAAATGAATAT
74375913 T
1 T
74375914 TTTAGTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 5 0.29
18 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (18 bp):
TATATAATAAATGAATAT
Found at i:74376343 original size:30 final size:30
Alignment explanation
Indices: 74376309--74376371 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
74376299 ACTTAACAAG
74376309 CAAATG-ATTCTAAAATAATAAAAAAATTAA
1 CAAATGCATT-TAAAATAATAAAAAAATTAA
*
74376339 CAAATGCCTTTAAAATAATAAAAAAATTAA
1 CAAATGCATTTAAAATAATAAAAAAATTAA
74376369 CAA
1 CAA
74376372 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCATTTAAAATAATAAAAAAATTAA
Found at i:74381452 original size:36 final size:36
Alignment explanation
Indices: 74381405--74381477 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
74381395 ATGCTCTCTA
74381405 TCATTTGGTCTGGCTGGCACATTGACTTGCTTACTT
1 TCATTTGGTCTGGCTGGCACATTGACTTGCTTACTT
74381441 TCATTTGGTCTGGCTGGCACATTGACTTGCTTACTT
1 TCATTTGGTCTGGCTGGCACATTGACTTGCTTACTT
74381477 T
1 T
74381478 AAAGCCCTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.14, C:0.22, G:0.22, T:0.42
Consensus pattern (36 bp):
TCATTTGGTCTGGCTGGCACATTGACTTGCTTACTT
Found at i:74391794 original size:21 final size:21
Alignment explanation
Indices: 74391770--74391854 Score: 80
Period size: 21 Copynumber: 4.0 Consensus size: 21
74391760 TGATCAGTAT
*
74391770 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
74391791 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* *
74391812 ACGACACACGAGGTGCCTGAAA
1 ACGACACACAAAGTGCCT-AAA
*
74391834 TACGACACATAAAGTGCCTAA
1 -ACGACACACAAAGTGCCTAA
74391855 TTGGTAAAGT
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
21 34 0.65
22 3 0.06
23 15 0.29
ACGTcount: A:0.39, C:0.26, G:0.21, T:0.14
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:74391820 original size:23 final size:22
Alignment explanation
Indices: 74391768--74391842 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 22
74391758 CATGATCAGT
** *
74391768 ATACGACACATAAAGTGCCT-A
1 ATACGACACACGAGGTGCCTGA
*
74391789 AAACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
74391810 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTG-A
74391833 ATACGACACA
1 ATACGACACA
74391843 TAAAGTGCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 36 0.78
23 10 0.22
ACGTcount: A:0.39, C:0.27, G:0.21, T:0.13
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:74392253 original size:15 final size:15
Alignment explanation
Indices: 74392225--74392282 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
74392215 TCATATATAT
*
74392225 TATATAATTTAATCAA
1 TATA-AATTCAATCAA
74392241 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
74392256 AATAATTTCAATCAA
1 TATAAATTCAATCAA
74392271 TATAAATTCAAT
1 TATAAATTCAAT
74392283 AAAACAGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 33 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:74392271 original size:30 final size:28
Alignment explanation
Indices: 74392228--74392286 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
74392218 TATATATTAT
74392228 ATAATTTAATCAATATAAATTCAATCAAA
1 ATAATTTAATCAATATAAATTCAAT-AAA
74392257 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAATTT-AATCAATATAAATTCAATAAA
74392286 A
1 A
74392287 CAGATATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 18 0.62
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (28 bp):
ATAATTTAATCAATATAAATTCAATAAA
Found at i:74403071 original size:40 final size:41
Alignment explanation
Indices: 74403017--74403185 Score: 225
Period size: 41 Copynumber: 4.1 Consensus size: 41
74403007 GCAAAAATTG
* ***
74403017 TAAAACACAGAGCAATAGCGGCG-TTTTACCAAAAACGCCGC
1 TAAAAGACAGAGCAATAGCGGCGCTTTT-GGTAAAACGCCGC
*
74403058 TAAAA-ACTGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAGACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
**
74403098 TAAAAGACAGAGCTTTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAGACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
** *
74403139 TAAAAGACAGAGCTTTAGCGGCGCTTTTGATAAAACGCCGC
1 TAAAAGACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
74403180 TAAAAG
1 TAAAAG
74403186 TCATATAACT
Statistics
Matches: 118, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 31 0.26
41 87 0.74
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (41 bp):
TAAAAGACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:74403127 original size:41 final size:41
Alignment explanation
Indices: 74403048--74403185 Score: 233
Period size: 41 Copynumber: 3.4 Consensus size: 41
74403038 CGTTTTACCA
* **
74403048 AAAACGCCGCTAAAA-ACTGAGCAATAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCTTTAGCGGCGCTTTTGGT
74403088 AAAACGCCGCTAAAAGACAGAGCTTTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCTTTAGCGGCGCTTTTGGT
*
74403129 AAAACGCCGCTAAAAGACAGAGCTTTAGCGGCGCTTTTGAT
1 AAAACGCCGCTAAAAGACAGAGCTTTAGCGGCGCTTTTGGT
74403170 AAAACGCCGCTAAAAG
1 AAAACGCCGCTAAAAG
74403186 TCATATAACT
Statistics
Matches: 93, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
40 15 0.16
41 78 0.84
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGACAGAGCTTTAGCGGCGCTTTTGGT
Found at i:74403829 original size:24 final size:24
Alignment explanation
Indices: 74403802--74403850 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
74403792 CGTATATTTA
* *
74403802 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAACTAAT
74403826 TTAAAAGTCTATATAAAAACTAAT
1 TTAAAAGTCTATATAAAAACTAAT
74403850 T
1 T
74403851 GTTATTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (24 bp):
TTAAAAGTCTATATAAAAACTAAT
Found at i:74404188 original size:7 final size:7
Alignment explanation
Indices: 74404129--74404189 Score: 59
Period size: 7 Copynumber: 8.6 Consensus size: 7
74404119 GAGTTACTAT
*
74404129 TTTAAGG
1 TTTATGG
74404136 TTTATGG
1 TTTATGG
*
74404143 ATTATGG
1 TTTATGG
*
74404150 ATTATGGG
1 TTTAT-GG
74404158 TTTATGG
1 TTTATGG
*
74404165 ATTATGG
1 TTTATGG
**
74404172 TTTACAG
1 TTTATGG
74404179 TTTATGG
1 TTTATGG
74404186 TTTA
1 TTTA
74404190 AAGGTTGGGG
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
7 38 0.86
8 6 0.14
ACGTcount: A:0.23, C:0.02, G:0.26, T:0.49
Consensus pattern (7 bp):
TTTATGG
Found at i:74404994 original size:22 final size:23
Alignment explanation
Indices: 74404969--74405032 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
74404959 TAAATTTTTA
*
74404969 AAAAATTATTTAAAATT-AATAT
1 AAAAATTATTAAAAATTCAATAT
74404991 AAAAGA-TA-TAAAAATTCAATAT
1 AAAA-ATTATTAAAAATTCAATAT
* *
74405013 AAAAATTATAAAAAAGTCAA
1 AAAAATTATTAAAAATTCAA
74405033 AAATTAGCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
21 8 0.23
22 17 0.49
23 10 0.29
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (23 bp):
AAAAATTATTAAAAATTCAATAT
Found at i:74405066 original size:38 final size:40
Alignment explanation
Indices: 74405024--74405105 Score: 107
Period size: 38 Copynumber: 2.1 Consensus size: 40
74405014 AAAATTATAA
*
74405024 AAAAGTCAA-AAATTAGCGGCGTTTAT-AGAAA-ACGCCGC
1 AAAAGGCAAGAAA-TAGCGGCGTTTATGAGAAAGACGCCGC
* *
74405062 AAAAGGCAAGCAATAGCGGCGTTTATGATAAAGACGCCGC
1 AAAAGGCAAGAAATAGCGGCGTTTATGAGAAAGACGCCGC
74405102 AAAA
1 AAAA
74405106 AGTAATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
38 21 0.55
39 6 0.16
40 11 0.29
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.16
Consensus pattern (40 bp):
AAAAGGCAAGAAATAGCGGCGTTTATGAGAAAGACGCCGC
Found at i:74405269 original size:20 final size:18
Alignment explanation
Indices: 74405254--74405289 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
74405244 TATTTCTCTC
*
74405254 CCCCGATTCCCTTTTCTT
1 CCCCAATTCCCTTTTCTT
*
74405272 TCCCAATTCCCTTTTCTT
1 CCCCAATTCCCTTTTCTT
74405290 TCTCAGCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.08, C:0.42, G:0.03, T:0.47
Consensus pattern (18 bp):
CCCCAATTCCCTTTTCTT
Found at i:74405396 original size:35 final size:36
Alignment explanation
Indices: 74405319--74405397 Score: 90
Period size: 35 Copynumber: 2.2 Consensus size: 36
74405309 AAGCCATTTG
* *** *
74405319 CCTAAATCATAGTTCCCCCGAAACCCTCATTTTCTC
1 CCTAAATCATAGTTCCCCCAAAACCCTCAAAATATC
*
74405355 CC-AAATCATAGTTCCCTCAAAACCC-CAAAATATC
1 CCTAAATCATAGTTCCCCCAAAACCCTCAAAATATC
74405389 CCTAAATCA
1 CCTAAATCA
74405398 AACCCATTTG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
34 7 0.19
35 27 0.75
36 2 0.06
ACGTcount: A:0.34, C:0.37, G:0.04, T:0.25
Consensus pattern (36 bp):
CCTAAATCATAGTTCCCCCAAAACCCTCAAAATATC
Found at i:74409224 original size:9 final size:9
Alignment explanation
Indices: 74409210--74409268 Score: 82
Period size: 9 Copynumber: 6.6 Consensus size: 9
74409200 AATCTTAAAA
74409210 ATAACTTAC
1 ATAACTTAC
*
74409219 ATAACTCAC
1 ATAACTTAC
74409228 ATAACTTAC
1 ATAACTTAC
*
74409237 ATAATTTAC
1 ATAACTTAC
*
74409246 ATAACTCAC
1 ATAACTTAC
*
74409255 ATAACGTAC
1 ATAACTTAC
74409264 ATAAC
1 ATAAC
74409269 AACTTACGGA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.29
Consensus pattern (9 bp):
ATAACTTAC
Found at i:74409245 original size:27 final size:27
Alignment explanation
Indices: 74409210--74409268 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
74409200 AATCTTAAAA
*
74409210 ATAACTTACATAACTCACATAACTTAC
1 ATAACTTACATAACTCACATAACGTAC
*
74409237 ATAATTTACATAACTCACATAACGTAC
1 ATAACTTACATAACTCACATAACGTAC
74409264 ATAAC
1 ATAAC
74409269 AACTTACGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.29
Consensus pattern (27 bp):
ATAACTTACATAACTCACATAACGTAC
Found at i:74414466 original size:43 final size:45
Alignment explanation
Indices: 74414390--74414481 Score: 143
Period size: 43 Copynumber: 2.1 Consensus size: 45
74414380 ACTTAATAAT
*
74414390 ATTTGATTTATTCTAAATATTTATAATCTTTAATGATAATTTTTTA
1 ATTTGATTTATTCT-AATATTTATAATCTTTAATGATAATTGTTTA
*
74414436 ATTTGATTTATTCT-A-ATTTATAATCTTTAATTATAATTGTTTA
1 ATTTGATTTATTCTAATATTTATAATCTTTAATGATAATTGTTTA
74414479 ATT
1 ATT
74414482 CAATTCATCA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 29 0.66
44 1 0.02
46 14 0.32
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (45 bp):
ATTTGATTTATTCTAATATTTATAATCTTTAATGATAATTGTTTA
Found at i:74414472 original size:20 final size:20
Alignment explanation
Indices: 74414408--74414473 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 20
74414398 TATTCTAAAT
*
74414408 ATTTATAATCTTTAATGATA
1 ATTTATAATCTTTAATTATA
* * * *
74414428 ATTTTTTAATTTGATTTATTCTA
1 A-TTTATAATCT--TTAATTATA
74414451 ATTTATAATCTTTAATTATA
1 ATTTATAATCTTTAATTATA
74414471 ATT
1 ATT
74414474 GTTTAATTCA
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
20 11 0.32
21 8 0.24
22 8 0.24
23 7 0.21
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.58
Consensus pattern (20 bp):
ATTTATAATCTTTAATTATA
Found at i:74414478 original size:23 final size:22
Alignment explanation
Indices: 74414409--74414478 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 22
74414399 ATTCTAAATA
*
74414409 TTTATAATCTTTAATGATAATT
1 TTTATAATCTTTAATTATAATT
* * *
74414431 TTT-TAATTTGATTTATTCTAA--
1 TTTATAATCT--TTAATTATAATT
74414452 TTTATAATCTTTAATTATAATT
1 TTTATAATCTTTAATTATAATT
74414474 GTTTA
1 -TTTA
74414479 ATTCAATTCA
Statistics
Matches: 35, Mismatches: 7, Indels: 11
0.66 0.13 0.21
Matches are distributed among these distances:
20 8 0.23
21 8 0.23
22 8 0.23
23 11 0.31
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (22 bp):
TTTATAATCTTTAATTATAATT
Found at i:74418778 original size:13 final size:13
Alignment explanation
Indices: 74418760--74418793 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
74418750 AATAGGGCTT
74418760 TAGCGGCGAGCAA
1 TAGCGGCGAGCAA
74418773 TAGCGGCGAGCAA
1 TAGCGGCGAGCAA
74418786 TAGCGGCG
1 TAGCGGCG
74418794 TCTTACGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.26, C:0.24, G:0.41, T:0.09
Consensus pattern (13 bp):
TAGCGGCGAGCAA
Found at i:74418908 original size:41 final size:41
Alignment explanation
Indices: 74418843--74418978 Score: 211
Period size: 41 Copynumber: 3.3 Consensus size: 41
74418833 ATTTTAGTAA
* *
74418843 AAAACGCCGCTAAA-AACAGAGCATTAGCAGCGCTTTTGGT
1 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
* *
74418883 AAAATGCCGCTAAAGACCAGAGCATTAACGGCGCTTTTGGT
1 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
* *
74418924 AAAACGCCGCGAAAGACCTGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
74418965 AAAACGCCGCTAAA
1 AAAACGCCGCTAAA
74418979 AGTCATATAA
Statistics
Matches: 86, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 13 0.15
41 73 0.85
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.19
Consensus pattern (41 bp):
AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
Found at i:74419495 original size:7 final size:7
Alignment explanation
Indices: 74419458--74419553 Score: 66
Period size: 7 Copynumber: 13.4 Consensus size: 7
74419448 GATTTAATTG
74419458 TTAGGGT
1 TTAGGGT
* *
74419465 TTGGGGA
1 TTAGGGT
*
74419472 TTATGGT
1 TTAGGGT
**
74419479 TTAGAAT
1 TTAGGGT
74419486 TTAGGGT
1 TTAGGGT
*
74419493 TTAAGGTT
1 TT-AGGGT
*
74419501 TTAAGTGT
1 TT-AGGGT
* *
74419509 TTATGGA
1 TTAGGGT
74419516 TTAGGGT
1 TTAGGGT
74419523 TTAGGGT
1 TTAGGGT
*
74419530 TTGGGGT
1 TTAGGGT
*
74419537 TTAAGGT
1 TTAGGGT
*
74419544 TTAGGCT
1 TTAGGGT
74419551 TTA
1 TTA
74419554 TAATTTAGAG
Statistics
Matches: 65, Mismatches: 23, Indels: 2
0.72 0.26 0.02
Matches are distributed among these distances:
7 53 0.82
8 12 0.18
ACGTcount: A:0.20, C:0.01, G:0.34, T:0.45
Consensus pattern (7 bp):
TTAGGGT
Found at i:74419991 original size:80 final size:81
Alignment explanation
Indices: 74419902--74420071 Score: 270
Period size: 81 Copynumber: 2.1 Consensus size: 81
74419892 CTGGCGTTTA
74419902 TTTAAAAAACACCACAAAAAACATAGCAG-TTAACGAAAACGGCATCGTTTTAATCGGATATTTA
1 TTTAAAAAACACCACAAAAAACATAGCAGTTTAACGAAAACGGCATCGTTTTAATCGGATATTTA
*
74419966 GGAGAGTAGCGGCGTT
66 GGAGAGTACCGGCGTT
* * * * *
74419982 TTTAAAAAACGCCGCAAAAAACATAGCAGTTTAACGAAAACGGCGTCGTTTTAATTGGATTTTTA
1 TTTAAAAAACACCACAAAAAACATAGCAGTTTAACGAAAACGGCATCGTTTTAATCGGATATTTA
*
74420047 GGGGAGTACCGGCGTT
66 GGAGAGTACCGGCGTT
74420063 TTTAAAAAA
1 TTTAAAAAA
74420072 AACGCCACAA
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 27 0.33
81 55 0.67
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (81 bp):
TTTAAAAAACACCACAAAAAACATAGCAGTTTAACGAAAACGGCATCGTTTTAATCGGATATTTA
GGAGAGTACCGGCGTT
Found at i:74421806 original size:21 final size:21
Alignment explanation
Indices: 74421780--74421827 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
74421770 TCAACTTAGA
*
74421780 GCGGAGGCAGCAGCGCGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
74421801 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
74421822 GCGGAG
1 GCGGAG
74421828 CAGAACAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.21, G:0.58, T:0.00
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:74422522 original size:13 final size:13
Alignment explanation
Indices: 74422504--74422531 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
74422494 AGAAAAGCAT
74422504 TTTGGGTTTAAGC
1 TTTGGGTTTAAGC
74422517 TTTGGGTTTAAGC
1 TTTGGGTTTAAGC
74422530 TT
1 TT
74422532 GATAATCAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.07, G:0.29, T:0.50
Consensus pattern (13 bp):
TTTGGGTTTAAGC
Found at i:74425480 original size:9 final size:9
Alignment explanation
Indices: 74425466--74425502 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
74425456 TATAGTTTAA
74425466 TATTCGAAT
1 TATTCGAAT
74425475 TATTCGAAT
1 TATTCGAAT
*
74425484 TATTCGAGT
1 TATTCGAAT
74425493 TATTCGAAT
1 TATTCGAAT
74425502 T
1 T
74425503 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:74431498 original size:51 final size:50
Alignment explanation
Indices: 74431427--74431586 Score: 248
Period size: 51 Copynumber: 3.2 Consensus size: 50
74431417 CTGATCACAT
74431427 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
* *
74431478 TTATCACTTGTCACTGATCAGATAAGAGTAGCTAAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
* * *
74431528 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
*
74431579 TTGTCACT
1 TTATCACT
74431587 GATCAGAAGT
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 46 0.46
51 55 0.54
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (50 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
Found at i:74434685 original size:24 final size:22
Alignment explanation
Indices: 74434638--74434687 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
74434628 CGATTAAGAA
*
74434638 AATTATAAAAATATTTATTTAT
1 AATTATAAAAATATTTATTAAT
74434660 AATTA-AAAAATTATATTATTCAAT
1 AATTATAAAAA-TAT-TTATT-AAT
74434684 AATT
1 AATT
74434688 TTTTAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 5 0.21
22 8 0.33
23 5 0.21
24 6 0.25
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
AATTATAAAAATATTTATTAAT
Found at i:74436005 original size:29 final size:29
Alignment explanation
Indices: 74435930--74436032 Score: 81
Period size: 28 Copynumber: 3.6 Consensus size: 29
74435920 TTTTAATTAT
* *
74435930 TTTTTAAATTTTAAAAAT-ATTTTATACT
1 TTTTTAATTTTTAAAAATAATTTTATACA
**
74435958 TTTTATACATTTTT---AATAATTTTATTGA
1 TTTT-TA-ATTTTTAAAAATAATTTTATACA
*
74435986 TTTTTAATTTTTAAAAATAATTTCTATA-T
1 TTTTTAATTTTTAAAAATAATTT-TATACA
74436015 TTCTTTGAATTTTTAAAA
1 TT-TTT-AATTTTTAAAA
74436033 TTAAAAAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 15
0.74 0.07 0.19
Matches are distributed among these distances:
26 6 0.10
27 5 0.08
28 15 0.25
29 12 0.20
30 11 0.18
31 11 0.18
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (29 bp):
TTTTTAATTTTTAAAAATAATTTTATACA
Found at i:74436170 original size:11 final size:11
Alignment explanation
Indices: 74436154--74436192 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
74436144 TTCAAATGTT
*
74436154 AAAAATAAAAA
1 AAAAATTAAAA
*
74436165 AAAAATTAAAT
1 AAAAATTAAAA
*
74436176 ACAAATTAAAA
1 AAAAATTAAAA
74436187 AAAAAT
1 AAAAAT
74436193 CTTTTTATAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (11 bp):
AAAAATTAAAA
Found at i:74438442 original size:11 final size:11
Alignment explanation
Indices: 74438426--74438456 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
74438416 TTTAAAATCT
74438426 AAAAAATAAAA
1 AAAAAATAAAA
74438437 AAAAAATAAAA
1 AAAAAATAAAA
74438448 ATAAAAATA
1 A-AAAAATA
74438457 TAAGGATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (11 bp):
AAAAAATAAAA
Found at i:74438455 original size:6 final size:6
Alignment explanation
Indices: 74438427--74438456 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
74438417 TTAAAATCTA
74438427 AAAAAT AAAAA- AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A
74438457 TAAGGATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:74441441 original size:26 final size:26
Alignment explanation
Indices: 74441405--74441456 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
74441395 TCGAGAACTT
74441405 GAATTCTCGAATCTGTTATTTATGCA
1 GAATTCTCGAATCTGTTATTTATGCA
74441431 GAATTCTCGAATCTGTTATTTATGCA
1 GAATTCTCGAATCTGTTATTTATGCA
74441457 TACTTTTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (26 bp):
GAATTCTCGAATCTGTTATTTATGCA
Found at i:74442446 original size:15 final size:15
Alignment explanation
Indices: 74442428--74442462 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
74442418 ACGGGGTCCA
74442428 TCTCCTAGGGTTGCC
1 TCTCCTAGGGTTGCC
*
74442443 TCTCCTAGGGTTGCT
1 TCTCCTAGGGTTGCC
74442458 TCTCC
1 TCTCC
74442463 AAGAGCTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.34, G:0.23, T:0.37
Consensus pattern (15 bp):
TCTCCTAGGGTTGCC
Found at i:74442472 original size:15 final size:15
Alignment explanation
Indices: 74442454--74442511 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
74442444 CTCCTAGGGT
74442454 TGCTTCTCCAAGAGC
1 TGCTTCTCCAAGAGC
*
74442469 TGCTTCCCCTCCACGAGC
1 TGCTT---CTCCAAGAGC
* * *
74442487 TGCATCCCCTAGAGC
1 TGCTTCTCCAAGAGC
74442502 TGCTTCTCCA
1 TGCTTCTCCA
74442512 CCTCCACCTC
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
15 19 0.59
18 13 0.41
ACGTcount: A:0.16, C:0.41, G:0.17, T:0.26
Consensus pattern (15 bp):
TGCTTCTCCAAGAGC
Found at i:74442486 original size:18 final size:17
Alignment explanation
Indices: 74442459--74442507 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
74442449 AGGGTTGCTT
74442459 CTCCAAGAGCTGCTTCCC
1 CTCC-AGAGCTGCTTCCC
*
74442477 CTCCACGAGCTGCATCCC
1 CTCCA-GAGCTGCTTCCC
74442495 CT--AGAGCTGCTTC
1 CTCCAGAGCTGCTTC
74442508 TCCACCTCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 9 0.32
16 1 0.04
17 1 0.04
18 17 0.61
ACGTcount: A:0.16, C:0.43, G:0.18, T:0.22
Consensus pattern (17 bp):
CTCCAGAGCTGCTTCCC
Found at i:74442554 original size:15 final size:15
Alignment explanation
Indices: 74442536--74442580 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
74442526 CCCACCCCCT
74442536 CGAGCTGCTTCTCCA
1 CGAGCTGCTTCTCCA
*
74442551 CGAGTTGCTTCTCCA
1 CGAGCTGCTTCTCCA
* *
74442566 AGAGGTGCTTCTCCA
1 CGAGCTGCTTCTCCA
74442581 AAACCTGCTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.16, C:0.33, G:0.22, T:0.29
Consensus pattern (15 bp):
CGAGCTGCTTCTCCA
Found at i:74442581 original size:15 final size:15
Alignment explanation
Indices: 74442541--74442581 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
74442531 CCCCTCGAGC
* *
74442541 TGCTTCTCCACGAGT
1 TGCTTCTCCAAGAGG
74442556 TGCTTCTCCAAGAGG
1 TGCTTCTCCAAGAGG
74442571 TGCTTCTCCAA
1 TGCTTCTCCAA
74442582 AACCTGCTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.32, G:0.20, T:0.32
Consensus pattern (15 bp):
TGCTTCTCCAAGAGG
Found at i:74446092 original size:24 final size:24
Alignment explanation
Indices: 74446065--74446110 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
74446055 TATTATGTTT
*
74446065 TTTTTTAATTATTTCATA-ATTACA
1 TTTTATAA-TATTTCATACATTACA
*
74446089 TTTTATAATATTTGATACATTA
1 TTTTATAATATTTCATACATTA
74446111 ATAATATATC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.57
Consensus pattern (24 bp):
TTTTATAATATTTCATACATTACA
Found at i:74446874 original size:26 final size:25
Alignment explanation
Indices: 74446840--74446888 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
74446830 AATTGGCAAC
*
74446840 TTTTTTCCA-ATTTGGTCCCTGAATT
1 TTTTTTCCATA-TTAGTCCCTGAATT
74446865 TTTTTGTCCATATTAGTCCCTGAA
1 TTTTT-TCCATATTAGTCCCTGAA
74446889 CTGGGCATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 5 0.24
26 15 0.71
27 1 0.05
ACGTcount: A:0.18, C:0.20, G:0.12, T:0.49
Consensus pattern (25 bp):
TTTTTTCCATATTAGTCCCTGAATT
Found at i:74454644 original size:26 final size:26
Alignment explanation
Indices: 74454615--74454667 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
74454605 TAAAAAGGTG
74454615 TACTGATTAATAGAAATTCAGTTCTT
1 TACTGATTAATAGAAATTCAGTTCTT
74454641 TACTGATTAATAGAAATTCAGTTCTT
1 TACTGATTAATAGAAATTCAGTTCTT
74454667 T
1 T
74454668 CTCCATTGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (26 bp):
TACTGATTAATAGAAATTCAGTTCTT
Found at i:74456334 original size:17 final size:19
Alignment explanation
Indices: 74456293--74456335 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
74456283 ATTATATATT
* *
74456293 ATATATCAATTTTGATTTA
1 ATATATAAATTTTAATTTA
74456312 ATATATAAATTTTAATTTA
1 ATATATAAATTTTAATTTA
74456331 ATATA
1 ATATA
74456336 GTTGATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (19 bp):
ATATATAAATTTTAATTTA
Found at i:74456406 original size:25 final size:27
Alignment explanation
Indices: 74456377--74456428 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
74456367 ATATATTAAT
*
74456377 TTATTT-T-TATATTAGATAAATATAA
1 TTATTTATATATAATAGATAAATATAA
*
74456402 TTATTTATATATAATATATAAATATAA
1 TTATTTATATATAATAGATAAATATAA
74456429 AATGATATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 6 0.26
26 1 0.04
27 16 0.70
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (27 bp):
TTATTTATATATAATAGATAAATATAA
Found at i:74456523 original size:28 final size:29
Alignment explanation
Indices: 74456476--74456534 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 29
74456466 AAAATTTGAT
*
74456476 CAAATCAAAATTTTATGTATAAAATTATA
1 CAAATCAAAAGTTTATGTATAAAATTATA
**
74456505 CAAATC-AAAGTTTATGTATTCAATTATA
1 CAAATCAAAAGTTTATGTATAAAATTATA
74456533 CA
1 CA
74456535 TTAAACTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 21 0.78
29 6 0.22
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.37
Consensus pattern (29 bp):
CAAATCAAAAGTTTATGTATAAAATTATA
Found at i:74457592 original size:22 final size:22
Alignment explanation
Indices: 74457580--74457622 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
74457570 TCTCTCTATT
74457580 TTGCTACCATTTTACTATTATG
1 TTGCTACCATTTTACTATTATG
* *
74457602 TTGCTACTATTTTATTATTAT
1 TTGCTACCATTTTACTATTAT
74457623 TATTTGGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.56
Consensus pattern (22 bp):
TTGCTACCATTTTACTATTATG
Found at i:74462421 original size:12 final size:13
Alignment explanation
Indices: 74462404--74462436 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74462394 AATTTTTAGA
74462404 TATTTAAAT-TTT
1 TATTTAAATATTT
74462416 TATTTAAATATTT
1 TATTTAAATATTT
*
74462429 TATATAAA
1 TATTTAAA
74462437 AATAATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TATTTAAATATTT
Found at i:74466950 original size:26 final size:26
Alignment explanation
Indices: 74466921--74467028 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
74466911 TGGTACAAAT
*
74466921 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATATTCCA
74466947 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATATTCCA
* *
74466973 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATATTCCA
* *
74466999 TGATAATGGTTTAGATAAATATTCCA
1 TGATAATGGATTAGGTAAATATTCCA
74467025 TGAT
1 TGAT
74467029 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
26 73 0.97
27 2 0.03
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATATTCCA
Found at i:74466986 original size:52 final size:52
Alignment explanation
Indices: 74466921--74467028 Score: 189
Period size: 52 Copynumber: 2.1 Consensus size: 52
74466911 TGGTACAAAT
*
74466921 TGATAATGAGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGAGTTAGGTAAATGTTCCATGATAATGGATTAGATAAATATTCCA
* *
74466973 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGATAAATATTCCA
1 TGATAATGAGTTAGGTAAATGTTCCATGATAATGGATTAGATAAATATTCCA
74467025 TGAT
1 TGAT
74467029 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.36
Consensus pattern (52 bp):
TGATAATGAGTTAGGTAAATGTTCCATGATAATGGATTAGATAAATATTCCA
Found at i:74468732 original size:32 final size:27
Alignment explanation
Indices: 74468650--74468736 Score: 124
Period size: 27 Copynumber: 3.2 Consensus size: 27
74468640 AGGAAGCATC
74468650 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTATGCCACATA-TATCTGAT
*
74468677 CTGGTGGCTATGCCACATATATCTGTT
1 CTGGTGGCTATGCCACATATATCTGAT
*
74468704 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTATGCCACATATATCTG-AT
74468731 CTGGTG
1 CTGGTG
74468737 ACTTCGTCAC
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
26 7 0.13
27 47 0.85
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTATGCCACATATATCTGAT
Found at i:74468747 original size:27 final size:27
Alignment explanation
Indices: 74468650--74468754 Score: 112
Period size: 27 Copynumber: 3.9 Consensus size: 27
74468640 AGGAAGCATC
74468650 CTGGTGGCTAT-GCCACAATTATCTG-AT
1 CTGGTGGCT-TCGCCACAA-TATCTGTAT
74468677 CTGGTGGCTAT-GCCACATATATCTGT-T
1 CTGGTGGCT-TCGCCACA-ATATCTGTAT
74468704 CTGGTGGC-TCTGCCACAATATCTGTAT
1 CTGGTGGCTTC-GCCACAATATCTGTAT
* *
74468731 CTGGTGACTTCGTCACAATATCTG
1 CTGGTGGCTTCGCCACAATATCTG
74468755 GCAGCCTCGC
Statistics
Matches: 70, Mismatches: 2, Indels: 12
0.83 0.02 0.14
Matches are distributed among these distances:
25 1 0.01
26 8 0.11
27 58 0.83
28 3 0.04
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTTCGCCACAATATCTGTAT
Found at i:74469810 original size:43 final size:43
Alignment explanation
Indices: 74469749--74469834 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
74469739 GTTTATATAT
*
74469749 ATATTGTTATATATGATATGGTTTGATATGTGAATGTATGCTA
1 ATATTGTTATATATGATATGATTTGATATGTGAATGTATGCTA
74469792 ATATTGTTATATATGATATGATTTGATATGTGAATGTATGCTA
1 ATATTGTTATATATGATATGATTTGATATGTGAATGTATGCTA
74469835 TCATATATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (43 bp):
ATATTGTTATATATGATATGATTTGATATGTGAATGTATGCTA
Found at i:74470036 original size:26 final size:25
Alignment explanation
Indices: 74469988--74470059 Score: 96
Period size: 26 Copynumber: 3.0 Consensus size: 25
74469978 ATGATAATTA
*
74469988 AATTAAATTAATAGTTATATAATGT
1 AATTAAATTAAAAGTTATATAATGT
*
74470013 GATTAAATTAAAATGTTATATAATGT
1 AATTAAATTAAAA-GTTATATAATGT
74470039 AATTAAA-T-AAAGTTA-ATAATG
1 AATTAAATTAAAAGTTATATAATG
74470060 GATTCCAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
22 6 0.14
23 4 0.09
24 3 0.07
25 12 0.28
26 18 0.42
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (25 bp):
AATTAAATTAAAAGTTATATAATGT
Found at i:74471059 original size:14 final size:14
Alignment explanation
Indices: 74471040--74471067 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
74471030 AATTTATATT
74471040 AAAATAATTTTAAA
1 AAAATAATTTTAAA
74471054 AAAATAATTTTAAA
1 AAAATAATTTTAAA
74471068 CACCAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AAAATAATTTTAAA
Found at i:74499113 original size:33 final size:33
Alignment explanation
Indices: 74499075--74499138 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
74499065 CTGAGTGGGA
*
74499075 GTGTTTGGTTGCTGGACATGAGCTGAAATGTGG
1 GTGTTTGGTTGCTGGACAGGAGCTGAAATGTGG
* *
74499108 GTGTTTTGTTGCTGGACAGGAGCTGGAATGT
1 GTGTTTGGTTGCTGGACAGGAGCTGAAATGT
74499139 CAAGAAGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.17, C:0.09, G:0.39, T:0.34
Consensus pattern (33 bp):
GTGTTTGGTTGCTGGACAGGAGCTGAAATGTGG
Found at i:74505537 original size:20 final size:21
Alignment explanation
Indices: 74505498--74505538 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
74505488 CTTAAATAAG
74505498 ATAAAAACTTATTTAGAAACT
1 ATAAAAACTTATTTAGAAACT
* *
74505519 ATAAAAATTTGTTTA-AAACT
1 ATAAAAACTTATTTAGAAACT
74505539 TATTAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (21 bp):
ATAAAAACTTATTTAGAAACT
Found at i:74505653 original size:20 final size:20
Alignment explanation
Indices: 74505617--74505658 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
74505607 GTGAGTATTA
*
74505617 TTTTATTATTTTCTTATAAT
1 TTTTAATATTTTCTTATAAT
74505637 TTTTAATATATTT-TTATAAT
1 TTTTAATAT-TTTCTTATAAT
74505657 TT
1 TT
74505659 CTTATAAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTAATATTTTCTTATAAT
Done.