Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77927517
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1491452 characters in sequence are not A, C, G, or T
File 241 of 250
Found at i:74505660 original size:30 final size:30
Alignment explanation
Indices: 74505617--74505732 Score: 85
Period size: 30 Copynumber: 3.8 Consensus size: 30
74505607 GTGAGTATTA
*
74505617 TTTTATTATTTTCTTATAATTTTTAATATAT
1 TTTTA-TAATTTCTTATAATTTTTAATATAT
* **
74505648 TTTTATAATTTCTTATAAATCATAATGAT-T
1 TTTTATAATTTCTTATAATTTTTAAT-ATAT
* * * *
74505678 ATCTATAATTTTTTATAATACTTTTAAAATA-
1 TTTTATAATTTCTTATAAT--TTTTAATATAT
*
74505709 TTTAATAATTATCTT-TAATTTTTA
1 TTTTATAATT-TCTTATAATTTTTA
74505733 TAATTCTTAA
Statistics
Matches: 65, Mismatches: 15, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
29 5 0.08
30 33 0.51
31 20 0.31
32 7 0.11
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (30 bp):
TTTTATAATTTCTTATAATTTTTAATATAT
Found at i:74505663 original size:10 final size:9
Alignment explanation
Indices: 74505630--74505757 Score: 51
Period size: 10 Copynumber: 13.0 Consensus size: 9
74505620 TATTATTTTC
74505630 TTATAATTT
1 TTATAATTT
74505639 TTAATATATTT
1 TT-ATA-ATTT
74505650 TTATAATTT
1 TTATAATTT
**
74505659 CTTATAAATCA
1 -TTAT-AATTT
* *
74505670 TAATGATTAT
1 TTATAATT-T
*
74505680 CTATAATTTT
1 TTATAA-TTT
74505690 TTATAATACTT
1 TTATAAT--TT
*
74505701 TTAAAATATT
1 TTATAAT-TT
*
74505711 TAATAATTAT
1 TTATAATT-T
74505721 CTT-TAATTT
1 -TTATAATTT
74505730 TTATAATTCT
1 TTATAATT-T
* **
74505740 TAATTTTTT
1 TTATAATTT
74505749 TTATAATTT
1 TTATAATTT
74505758 CGTATACCTT
Statistics
Matches: 86, Mismatches: 21, Indels: 24
0.66 0.16 0.18
Matches are distributed among these distances:
8 2 0.02
9 23 0.27
10 41 0.48
11 20 0.23
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.59
Consensus pattern (9 bp):
TTATAATTT
Found at i:74505692 original size:40 final size:38
Alignment explanation
Indices: 74505646--74505742 Score: 101
Period size: 40 Copynumber: 2.5 Consensus size: 38
74505636 TTTTTAATAT
*
74505646 ATTTTTATAATTTCTTATAAATCA-TAATGATTATCTATA
1 ATTTTTATAATTTCTTA-AAAT-ATTAATAATTATCTATA
*
74505685 ATTTTTTATAATACTT-TTAAAATATTTAATAATTATCTTTA
1 A-TTTTTATAAT--TTCTTAAAATA-TTAATAATTATCTATA
74505726 ATTTTTATAA-TTCTTAA
1 ATTTTTATAATTTCTTAA
74505743 TTTTTTTTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
37 2 0.04
38 4 0.08
39 2 0.04
40 23 0.46
41 17 0.34
42 2 0.04
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (38 bp):
ATTTTTATAATTTCTTAAAATATTAATAATTATCTATA
Found at i:74516972 original size:26 final size:25
Alignment explanation
Indices: 74516911--74516979 Score: 63
Period size: 26 Copynumber: 2.7 Consensus size: 25
74516901 TATATACAGT
*
74516911 TAAATTA-AAATTAAAGTTTCATATA
1 TAAATTACACATTAAA-TTTCATATA
74516936 TATACA-T-CACATTAAATTTCATATA
1 TA-A-ATTACACATTAAATTTCATATA
*
74516961 CTAAATTACACATCAAATT
1 -TAAATTACACATTAAATT
74516980 AAAGTTCAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
24 1 0.03
25 13 0.36
26 21 0.58
27 1 0.03
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (25 bp):
TAAATTACACATTAAATTTCATATA
Found at i:74524450 original size:30 final size:30
Alignment explanation
Indices: 74524416--74524479 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
74524406 TTATTTAGCA
*
74524416 TTTTC-TTCTTCTTTTTCTTTTCATGG-TCTC
1 TTTTCTTTC-TCTGTTTC-TTTCATGGATCTC
74524446 TTTTCTTTCTCTGTTTCTTTCATGGCATCTC
1 TTTTCTTTCTCTGTTTCTTTCATGG-ATCTC
74524477 TTT
1 TTT
74524480 CGGCTCCTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 8 0.27
30 12 0.40
31 10 0.33
ACGTcount: A:0.05, C:0.23, G:0.08, T:0.64
Consensus pattern (30 bp):
TTTTCTTTCTCTGTTTCTTTCATGGATCTC
Found at i:74530950 original size:21 final size:21
Alignment explanation
Indices: 74530924--74530964 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74530914 AGACGAGCAA
* *
74530924 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
74530945 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
74530965 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:74533773 original size:23 final size:25
Alignment explanation
Indices: 74533724--74533773 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 25
74533714 TTTGACTTTT
* *
74533724 TCAAGAAAATTTTTACTTTATTTTTA
1 TCAAGAAAATTTTTA-TTTAATATTA
74533750 TCAAG-AAATTTTT-TTTAATATTA
1 TCAAGAAAATTTTTATTTAATATTA
74533773 T
1 T
74533774 AAAAATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 9 0.41
25 8 0.36
26 5 0.23
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (25 bp):
TCAAGAAAATTTTTATTTAATATTA
Found at i:74534669 original size:21 final size:21
Alignment explanation
Indices: 74534636--74534677 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
74534626 AATATATTAT
74534636 AAAATATAATATATAAATAAA
1 AAAATATAATATATAAATAAA
74534657 AAAAT-TAATTATATAAATAAA
1 AAAATATAA-TATATAAATAAA
74534678 CGTGATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAATATAATATATAAATAAA
Found at i:74543676 original size:30 final size:29
Alignment explanation
Indices: 74543615--74543676 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 29
74543605 ACTTATTTTA
*
74543615 TTGTTAAATTTTTATTATTTTAAAGATAT
1 TTGTTAAATTTTTATTATTTTAAAGACAT
*
74543644 TTGTTAATTTTGTTATTATTTTAGAA-ACAT
1 TTGTTAAATTT-TTATTATTTTA-AAGACAT
74543674 TTG
1 TTG
74543677 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 10 0.34
30 17 0.59
31 2 0.07
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.58
Consensus pattern (29 bp):
TTGTTAAATTTTTATTATTTTAAAGACAT
Found at i:74548346 original size:8 final size:8
Alignment explanation
Indices: 74548335--74548359 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
74548325 TTTAATAAGA
74548335 TATTTTAT
1 TATTTTAT
74548343 TATTTTAT
1 TATTTTAT
74548351 TATTTTAT
1 TATTTTAT
74548359 T
1 T
74548360 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:74548970 original size:23 final size:25
Alignment explanation
Indices: 74548930--74548975 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
74548920 GTATAAATTG
74548930 AATTAGAAGCTGAGTGAG-ATATGA
1 AATTAGAAGCTGAGTGAGTATATGA
* *
74548954 AATTA-AAGCTTATTGAGTATAT
1 AATTAGAAGCTGAGTGAGTATAT
74548976 TTTCATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.41, C:0.04, G:0.22, T:0.33
Consensus pattern (25 bp):
AATTAGAAGCTGAGTGAGTATATGA
Found at i:74551075 original size:31 final size:31
Alignment explanation
Indices: 74551040--74551108 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 31
74551030 GCCATTCACC
74551040 TTCAAAATGTTACAAAATAA-TCACTGAACTA
1 TTCAAAATGTTAC-AAATAATTCACTGAACTA
* **
74551071 TTCAAAATTTTACATTTAATTCACTGAACTA
1 TTCAAAATGTTACAAATAATTCACTGAACTA
74551102 TTCAAAA
1 TTCAAAA
74551109 AATTTCATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 4 0.12
31 30 0.88
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.35
Consensus pattern (31 bp):
TTCAAAATGTTACAAATAATTCACTGAACTA
Found at i:74551118 original size:31 final size:31
Alignment explanation
Indices: 74551060--74551120 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
74551050 TACAAAATAA
*
74551060 TCACTGAACTATTCAAAATTTTACATTTAAT
1 TCACTGAACTATTCAAAAATTTACATTTAAT
74551091 TCACTGAACTATTCAAAAAATTT-CATTTAA
1 TCACTGAACTATTC-AAAAATTTACATTTAA
74551121 GTTATTGGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 21 0.75
32 7 0.25
ACGTcount: A:0.41, C:0.16, G:0.03, T:0.39
Consensus pattern (31 bp):
TCACTGAACTATTCAAAAATTTACATTTAAT
Found at i:74557103 original size:44 final size:43
Alignment explanation
Indices: 74557049--74557192 Score: 172
Period size: 44 Copynumber: 3.3 Consensus size: 43
74557039 ATTATTTCAT
74557049 AAATTTCATTTCTATATCTCAATTCAATAACTTATTCTCAAGA
1 AAATTTCATTTCTATATCTCAATTCAATAACTTATTCTCAAGA
* * * *
74557092 AAATATTCATTTCTATTCATAATCAA-TCAATAA--AAATCTC-A-T
1 AAAT-TTCATTTCTA-T-AT-CTCAATTCAATAACTTATTCTCAAGA
74557134 AAATTTCATTTCTATATCTCAATTCAATAACTTATTCTCAAGA
1 AAATTTCATTTCTATATCTCAATTCAATAACTTATTCTCAAGA
74557177 AAATATTCATTTCTAT
1 AAAT-TTCATTTCTAT
74557193 TCATAATCAA
Statistics
Matches: 83, Mismatches: 8, Indels: 19
0.75 0.07 0.17
Matches are distributed among these distances:
38 4 0.05
39 9 0.11
40 1 0.01
41 15 0.18
42 5 0.06
43 9 0.11
44 26 0.31
45 1 0.01
46 9 0.11
47 4 0.05
ACGTcount: A:0.40, C:0.17, G:0.01, T:0.42
Consensus pattern (43 bp):
AAATTTCATTTCTATATCTCAATTCAATAACTTATTCTCAAGA
Found at i:74557136 original size:85 final size:85
Alignment explanation
Indices: 74557045--74557214 Score: 331
Period size: 85 Copynumber: 2.0 Consensus size: 85
74557035 AACCATTATT
74557045 TCATAAATTTCATTTCTATATCTCAATTCAATAACTTATTCTCAAGAAAATATTCATTTCTATTC
1 TCATAAATTTCATTTCTATATCTCAATTCAATAACTTATTCTCAAGAAAATATTCATTTCTATTC
74557110 ATAATCAATCAATAAAAATC
66 ATAATCAATCAATAAAAATC
74557130 TCATAAATTTCATTTCTATATCTCAATTCAATAACTTATTCTCAAGAAAATATTCATTTCTATTC
1 TCATAAATTTCATTTCTATATCTCAATTCAATAACTTATTCTCAAGAAAATATTCATTTCTATTC
*
74557195 ATAATCAATCAATAACAATC
66 ATAATCAATCAATAAAAATC
74557215 AGTTGTTCAG
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.41, C:0.18, G:0.01, T:0.40
Consensus pattern (85 bp):
TCATAAATTTCATTTCTATATCTCAATTCAATAACTTATTCTCAAGAAAATATTCATTTCTATTC
ATAATCAATCAATAAAAATC
Found at i:74558321 original size:70 final size:76
Alignment explanation
Indices: 74558166--74558341 Score: 195
Period size: 70 Copynumber: 2.3 Consensus size: 76
74558156 TTTCCTATCA
* * * *
74558166 AATTCAAATCACTAATTACTTTTCAATCAATATACATTTCAAATACTCACATATTTTCTTCACTC
1 AATTCAAATCACT-TTTAATTTCCAATCAATATACATTTCAAATACTCACATA---TATTCACTC
74558231 AATTCAATTTGATTC
62 AATTCAATTTGATTC
* *
74558246 AATTCAAATCACTTTTAGTTTCCAATCAATATAC-TTTCAAATATTCACATA-ATTCA-T-AATT
1 AATTCAAATCACTTTTAATTTCCAATCAATATACATTTCAAATACTCACATATATTCACTCAATT
74558307 CAA-TT-ACTT-
66 CAATTTGA-TTC
*
74558316 AATTCAAATCAATTTTAATTTCCAAT
1 AATTCAAATCACTTTTAATTTCCAAT
74558342 TCGTTCACAT
Statistics
Matches: 88, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
70 25 0.28
71 4 0.05
72 7 0.08
73 1 0.01
74 4 0.05
78 16 0.18
79 18 0.20
80 13 0.15
ACGTcount: A:0.38, C:0.19, G:0.01, T:0.41
Consensus pattern (76 bp):
AATTCAAATCACTTTTAATTTCCAATCAATATACATTTCAAATACTCACATATATTCACTCAATT
CAATTTGATTC
Found at i:74558328 original size:80 final size:80
Alignment explanation
Indices: 74558166--74558329 Score: 181
Period size: 80 Copynumber: 2.0 Consensus size: 80
74558156 TTTCCTATCA
* * * *
74558166 AATTCAAATCACTAATTACTTTTCAATCAATATACATTTCAAATACTCACATATTTTCTTCACTC
1 AATTCAAATCACTAATTACTTTCCAATCAATATACATTTCAAATACTCACATATATTCATAACTC
** *
74558231 AATTCAATTTGATTC
66 AATTCAATTCAAATC
* * * *
74558246 AATTCAAATCACT-TTTAGTTTCCAATCAATATAC-TTTCAAATATTCACATA-ATTCATAATTC
1 AATTCAAATCACTAATTACTTTCCAATCAATATACATTTCAAATACTCACATATATTCATAACTC
74558308 AATTACTTAATTCAAATC
66 AATT-C--AATTCAAATC
74558326 AATT
1 AATT
74558330 TTAATTTCCA
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
77 11 0.16
78 17 0.24
79 18 0.26
80 24 0.34
ACGTcount: A:0.38, C:0.20, G:0.01, T:0.41
Consensus pattern (80 bp):
AATTCAAATCACTAATTACTTTCCAATCAATATACATTTCAAATACTCACATATATTCATAACTC
AATTCAATTCAAATC
Found at i:74558335 original size:16 final size:19
Alignment explanation
Indices: 74558295--74558335 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
74558285 AATATTCACA
74558295 TAATTCATAATTCAATTACT
1 TAATTCATAATTCAATTA-T
74558315 TAATTCA-AA-TCAATT-T
1 TAATTCATAATTCAATTAT
74558331 TAATT
1 TAATT
74558336 TCCAATTCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 6 0.29
18 6 0.29
19 2 0.10
20 7 0.33
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.46
Consensus pattern (19 bp):
TAATTCATAATTCAATTAT
Found at i:74559000 original size:23 final size:24
Alignment explanation
Indices: 74558944--74559002 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
74558934 AAATAAATTA
* *
74558944 TTTTATAACAAGTGTACATATATC
1 TTTTATTACAAATGTACATATATC
74558968 TATTTATTACAAATGTACCA-ATAT-
1 T-TTTATTACAAATGTA-CATATATC
74558992 TTTTATTACAA
1 TTTTATTACAA
74559003 TTGTCATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 10 0.32
24 2 0.06
25 17 0.55
26 2 0.06
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (24 bp):
TTTTATTACAAATGTACATATATC
Found at i:74559400 original size:3 final size:3
Alignment explanation
Indices: 74559394--74559419 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
74559384 AATAAGATTA
74559394 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
74559420 AACAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:74559729 original size:21 final size:21
Alignment explanation
Indices: 74559705--74559746 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
74559695 ATTTTGGGTC
74559705 ATTACAATTTTAATTATCTCT
1 ATTACAATTTTAATTATCTCT
74559726 ATTACAATTTTAATTATCTCT
1 ATTACAATTTTAATTATCTCT
74559747 CTTTCATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTACAATTTTAATTATCTCT
Found at i:74588776 original size:58 final size:59
Alignment explanation
Indices: 74588652--74588801 Score: 178
Period size: 58 Copynumber: 2.5 Consensus size: 59
74588642 ACATTTGGTG
* * * * *
74588652 CTTGAACTTGCCATTTTTTTTCTTAATTTGATATTTAAATTCTTTTTTGTCTAATTTGATA
1 CTTGAACTTGACA--TTTTTTCTTAATTTGGTATTTAAATTCTTTTTAGTCCAATTTGACA
* *
74588713 TTTGAACTTGACATTTTTTCTTAATTTGGTATTTTAATT-TTTTTAGTCCAATTTGACA
1 CTTGAACTTGACATTTTTTCTTAATTTGGTATTTAAATTCTTTTTAGTCCAATTTGACA
* *
74588771 CTTGAACTTGTCTCTTTTTTC-TAATTTGGTA
1 CTTGAACTTGAC-ATTTTTTCTTAATTTGGTA
74588802 CCTAATCTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
58 36 0.46
59 31 0.40
61 11 0.14
ACGTcount: A:0.22, C:0.12, G:0.10, T:0.56
Consensus pattern (59 bp):
CTTGAACTTGACATTTTTTCTTAATTTGGTATTTAAATTCTTTTTAGTCCAATTTGACA
Found at i:74588813 original size:58 final size:58
Alignment explanation
Indices: 74588652--74588825 Score: 158
Period size: 58 Copynumber: 2.9 Consensus size: 58
74588642 ACATTTGGTG
* * * * *
74588652 CTTGAACTTGCCATTTTTTTTCTTAATTTGATAT-TTAAATTCTTTTTTGTCTAATTTGATA
1 CTTGAACTTGACA--TTTTTTCTTAATTTGGTATCCT-AA-TCTTTTTTGTCCAATTTGACA
* **
74588713 TTTGAACTTGACATTTTTTCTTAATTTGGTATTTTAAT-TTTTTTAGTCCAATTTGACA
1 CTTGAACTTGACATTTTTTCTTAATTTGGTATCCTAATCTTTTTT-GTCCAATTTGACA
* * *
74588771 CTTGAACTTGTCTCTTTTTTC-TAATTTGGTA-CCTAATCTTTTTTTGTTCAATTTG
1 CTTGAACTTGAC-ATTTTTTCTTAATTTGGTATCCTAATC-TTTTTTGTCCAATTTG
74588826 GCACCTAAAC
Statistics
Matches: 97, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
57 10 0.10
58 41 0.42
59 33 0.34
60 2 0.02
61 11 0.11
ACGTcount: A:0.21, C:0.13, G:0.10, T:0.56
Consensus pattern (58 bp):
CTTGAACTTGACATTTTTTCTTAATTTGGTATCCTAATCTTTTTTGTCCAATTTGACA
Found at i:74595704 original size:26 final size:25
Alignment explanation
Indices: 74595675--74595729 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
74595665 AACTTTCAAA
* *
74595675 AAAATTTTAAAAGATCATAAAA-ATCT
1 AAAACTTTAAAAAATC-TAAAACA-CT
74595701 AAAACTTTAAAAAATCTAAAACACT
1 AAAACTTTAAAAAATCTAAAACACT
74595726 AAAA
1 AAAA
74595730 AAAGTCCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.62, C:0.11, G:0.02, T:0.25
Consensus pattern (25 bp):
AAAACTTTAAAAAATCTAAAACACT
Found at i:74595728 original size:17 final size:17
Alignment explanation
Indices: 74595693--74595731 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
74595683 AAAAGATCAT
**
74595693 AAAAATCTAAAACTTTA
1 AAAAATCTAAAACACTA
74595710 AAAAATCTAAAACACTA
1 AAAAATCTAAAACACTA
74595727 AAAAA
1 AAAAA
74595732 AGTCCATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.67, C:0.13, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAATCTAAAACACTA
Found at i:74596744 original size:37 final size:37
Alignment explanation
Indices: 74596670--74596750 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 37
74596660 TTTAAAATAT
*
74596670 AAATATA-TGTTTAAAAATAGCACATAAAACATAATG
1 AAATATATTATTTAAAAATAGCACATAAAACATAATG
* *
74596706 AAATATATTATTTAAAATTAGCTA-ATAATA-ATACATG
1 AAATATATTATTTAAAAATAGC-ACATAAAACATA-ATG
74596743 AAATATAT
1 AAATATAT
74596751 ACGTTATTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
36 10 0.26
37 28 0.72
38 1 0.03
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.33
Consensus pattern (37 bp):
AAATATATTATTTAAAAATAGCACATAAAACATAATG
Found at i:74598086 original size:11 final size:12
Alignment explanation
Indices: 74598063--74598087 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74598053 TATATATAAG
74598063 TTTTCTAATTTT
1 TTTTCTAATTTT
74598075 TTTTCTAATTTT
1 TTTTCTAATTTT
74598087 T
1 T
74598088 AAAATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTCTAATTTT
Found at i:74598915 original size:12 final size:12
Alignment explanation
Indices: 74598898--74598924 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
74598888 ATTTTAAGGA
74598898 ATTATTAAATAT
1 ATTATTAAATAT
74598910 ATTATTAAATAT
1 ATTATTAAATAT
74598922 ATT
1 ATT
74598925 TGTCCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTATTAAATAT
Found at i:74599110 original size:14 final size:14
Alignment explanation
Indices: 74599091--74599121 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
74599081 ATTTTTTAAA
74599091 ATTTTATAGTAATT
1 ATTTTATAGTAATT
74599105 ATTTTATAGTAATT
1 ATTTTATAGTAATT
74599119 ATT
1 ATT
74599122 GACAAATAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (14 bp):
ATTTTATAGTAATT
Found at i:74602402 original size:52 final size:52
Alignment explanation
Indices: 74602293--74602411 Score: 148
Period size: 52 Copynumber: 2.3 Consensus size: 52
74602283 ACATGCCTTA
* * ** * *
74602293 CAGGACGCATTTTCAACTGAGGTGGTAGAATGTTCTCTGAAAGTGCGTTTTG
1 CAGGACGCATTTTCAACTGAGGTCGTAGAATGTTATCTGAAAGCACATCTTG
* *
74602345 CAGGACGCGTTTTCAACTGAGGTCGTAGAATGTTATTTGAAAGCACATCTTG
1 CAGGACGCATTTTCAACTGAGGTCGTAGAATGTTATCTGAAAGCACATCTTG
* *
74602397 TAGGACGTATTTTCA
1 CAGGACGCATTTTCA
74602412 GAGAATATTC
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 56 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (52 bp):
CAGGACGCATTTTCAACTGAGGTCGTAGAATGTTATCTGAAAGCACATCTTG
Found at i:74603930 original size:23 final size:23
Alignment explanation
Indices: 74603900--74603944 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
74603890 CGAAAAAGAT
74603900 ATATATTAAGTTTGATTTTTTGA
1 ATATATTAAGTTTGATTTTTTGA
74603923 ATATATTAAGTTTGATTTTTTG
1 ATATATTAAGTTTGATTTTTTG
74603945 TCCTTACGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (23 bp):
ATATATTAAGTTTGATTTTTTGA
Found at i:74605890 original size:17 final size:16
Alignment explanation
Indices: 74605855--74605890 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
74605845 CCCCCACTTG
*
74605855 CCCACTTGCGCCGAAC
1 CCCACTTGCGCCCAAC
74605871 CCCACTTGCGCACCAAC
1 CCCACTTGCGC-CCAAC
74605888 CCC
1 CCC
74605891 CTACCATCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.19, C:0.56, G:0.14, T:0.11
Consensus pattern (16 bp):
CCCACTTGCGCCCAAC
Found at i:74609420 original size:12 final size:12
Alignment explanation
Indices: 74609399--74609434 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
74609389 AACATTTTGA
*
74609399 CATTCGTGCATT
1 CATTCATGCATT
74609411 CATTCATGCATT
1 CATTCATGCATT
*
74609423 CATTCATACATT
1 CATTCATGCATT
74609435 GCATATCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:74617868 original size:75 final size:75
Alignment explanation
Indices: 74617760--74617907 Score: 251
Period size: 75 Copynumber: 2.0 Consensus size: 75
74617750 TTTCTACTTT
74617760 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
74617825 TTTATGCTGG
66 TTTATGCTGG
* * * *
74617835 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGGGGTATTTTCGA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
*
74617900 TTTCTGCT
66 TTTATGCT
74617908 TTCCAATTTC
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (75 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTATGCTGG
Found at i:74617951 original size:164 final size:162
Alignment explanation
Indices: 74617671--74618066 Score: 571
Period size: 164 Copynumber: 2.4 Consensus size: 162
74617661 TTTCTATTCT
* * *
74617671 TCAAAAATCGACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATT
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
*
74617736 TCTGTTTTCTTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
66 TCTGCTTTC-TCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* *
74617801 CAGGACACGCTGAGGTAATTTCAATTTATGCTGG
130 CAGGACACGCTGAGGTAATTTCAATCTACG-TGG
* * * *
74617835 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGGGGTATTTTCGA
1 TC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
* *
74617900 TTTCTGCTTTC-CAATTTCT-GTCTTTCAAAATAATCAACTCATATTGCGAGAGGTGAGTTGAGC
64 TTTCTGCTTTCTCAATTTCTACT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
** * **
74617963 CTCAGGACACGCTGAGGTAATTTTTATCTCCGTTT
128 CTCAGGACACGCTGAGGTAATTTCAATCTACGTGG
*
74617998 TCGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
74618063 TCTG
66 TCTG
74618067 TTCGTCAAAA
Statistics
Matches: 207, Mismatches: 22, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
161 62 0.30
163 4 0.02
164 77 0.37
166 64 0.31
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (162 bp):
TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
TCTGCTTTCTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
AGGACACGCTGAGGTAATTTCAATCTACGTGG
Found at i:74618048 original size:72 final size:72
Alignment explanation
Indices: 74617931--74618133 Score: 302
Period size: 72 Copynumber: 2.8 Consensus size: 72
74617921 CTTTCAAAAT
**
74617931 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTTATCTCCGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATCTCCGT
*
74617996 T-TTCGAA
66 TCGTC-AA
* *
74618003 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATCTCCGT
74618068 TCGTCAA
66 TCGTCAA
* * *
74618075 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGG-CATGTTGAGGTATTTTCAAT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTAATTTCAAT
74618134 TAATGTTTTT
Statistics
Matches: 121, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
72 116 0.96
73 5 0.04
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (72 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATCTCCGT
TCGTCAA
Found at i:74618353 original size:89 final size:89
Alignment explanation
Indices: 74618073--74618636 Score: 453
Period size: 88 Copynumber: 6.4 Consensus size: 89
74618063 TCTGTTCGTC
* ** * *
74618073 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCA--TGTTGAGGTA-TTTTCAATT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGACTCACGTGCTGAGCTATTTTTCAATT
**
74618135 AATGTTTTTTCAAT-T-TATGCTTTTCA
66 TCTG-TTTTT-AATGTCTA-G-TTTTCA
* * * * ** * * * **
74618161 AGAATAAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTA-TTTTCAAAA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGACTCACGTGCTGAGCTATTTTTCAATT
**
74618225 TCTGTTTGGCAAAT-TCT-GTTTTCA
66 TCTGTTT--TTAATGTCTAGTTTTCA
* **
74618249 AAAATCAACTAATATTGCGAGAAGTGAGTTGAGCCTTTACTCACGTGCTGAGCTATTTTTCAATT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGACTCACGTGCTGAGCTATTTTTCAATT
* *
74618314 TCTATTTTTAATGTCTAGTTTTTA
66 TCTGTTTTTAATGTCTAGTTTTCA
* ** *
74618338 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGT--TGAGGTA-TTTTCAATT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGACTCACGTGCTGAGCTATTTTTCAATT
** *
74618400 AATGTTTTTTCAA-CT-TATGCTTTTCA
66 TCTG-TTTTT-AATGTCTA-G-TTTTCA
* ** * * *
74618426 AGAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACATGCCGAG--ATGTTTTCAAA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGACTCACGTGCTGAGCTAT-TTTTCAAT
* **
74618489 ATCTGTTTGGCAAAT-TCT-GTTTTCA
65 TTCTGTTT--TTAATGTCTAGTTTTCA
*
74618514 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCGTTG-CTCACGTGCTGAGCTATTTTTCAAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCC-TCGACTCACGTGCTGAGCTATTTTTCAAT
*
74618578 TTCTGTTTTTAATGTCTAGTTTTTA
65 TTCTGTTTTTAATGTCTAGTTTTCA
* * * *
74618603 AAAGTCAATTAATATTGCGAGAAATGAGTTGAGC
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
74618637 TCAGGATCAC
Statistics
Matches: 382, Mismatches: 69, Indels: 49
0.76 0.14 0.10
Matches are distributed among these distances:
86 12 0.03
87 19 0.05
88 192 0.50
89 119 0.31
90 38 0.10
91 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.36
Consensus pattern (89 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGACTCACGTGCTGAGCTATTTTTCAATT
TCTGTTTTTAATGTCTAGTTTTCA
Found at i:74618426 original size:177 final size:174
Alignment explanation
Indices: 74618073--74618548 Score: 444
Period size: 177 Copynumber: 2.7 Consensus size: 174
74618063 TCTGTTCGTC
* * ** ** * *
74618073 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGA--GGCATGTTGAGGTATTTTCAATTA
1 AAAATCAACTAATATTGCGAGAAGTGAGTTGAGCCTCGACTCACATGCCGAGATGTTTTCAA--A
* * * * * * * *
74618136 ATGTTTTTTCAATTTATGCTTTTCAAGAATAAACTCATATTACGAGAGGTGAGTTGAGCCTCGGG
64 ATCTATTTGCAAATTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
*
74618201 TCACATGCCGAGGTATTTTCAAAATCTGTTTGGCAAATTCTGTTTTCA
128 TCACA-GCCGAGGTATTTTCAAAATCTGTTTGGCAAATTATGTTTTCA
** * * *
74618249 AAAATCAACTAATATTGCGAGAAGTGAGTTGAGCCTTTACTCACGTGCTGAGCTAT-TTTTCAAT
1 AAAATCAACTAATATTGCGAGAAGTGAGTTGAGCCTCGACTCACATGCCGAG--ATGTTTTCAAA
* ** *
74618313 TTCTATTT-TTAATGTCTAGTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGA
64 ATCTATTTGCAAAT-TCT-GTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-
** * ** *
74618377 GG-CAC-GTTGAGGTATTTTCAATTAATGT-TTTTTCAACTTATGCTTTTCA
126 GGTCACAGCCGAGGTATTTTCAA--AATCTGTTTGGCAAATTATG-TTTTCA
* * **
74618426 AGAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACATGCCGAGATGTTTTCAAAAT
1 AAAATCAACTAATATTGCGAGAAGTGAGTTGAGCCTCGACTCACATGCCGAGATGTTTTCAAAAT
* *
74618491 CTGTTTGGCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCC
66 CTATTT-GCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
74618549 GTTGCTCACG
Statistics
Matches: 244, Mismatches: 43, Indels: 26
0.78 0.14 0.08
Matches are distributed among these distances:
175 16 0.07
176 100 0.41
177 107 0.44
178 13 0.05
179 7 0.03
180 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (174 bp):
AAAATCAACTAATATTGCGAGAAGTGAGTTGAGCCTCGACTCACATGCCGAGATGTTTTCAAAAT
CTATTTGCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
CAGCCGAGGTATTTTCAAAATCTGTTTGGCAAATTATGTTTTCA
Found at i:74618546 original size:265 final size:265
Alignment explanation
Indices: 74618073--74618636 Score: 984
Period size: 265 Copynumber: 2.1 Consensus size: 265
74618063 TCTGTTCGTC
*
74618073 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCATGTTGAGGTATTTTCAATTAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGTTGAGGTATTTTCAATTAAT
* *
74618138 GTTTTTTCAATTTATGCTTTTCAAGAATAAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTC
66 GTTTTTTCAACTTATGCTTTTCAAGAATAAACTCATATTACGAGAAGTGAGTTGAGCCTCGGGTC
*
74618203 ACATGCCGAGGTATTTTCAAAATCTGTTTGGCAAATTCTGTTTTCAAAAATCAACTAATATTGCG
131 ACATGCCGAGATATTTTCAAAATCTGTTTGGCAAATTCTGTTTTCAAAAATCAACTAATATTGCG
*
74618268 AGAAGTGAGTTGAGCCTTTACTCACGTGCTGAGCTATTTTTCAATTTCTATTTTTAATGTCTAGT
196 AGAAGTGAGTTGAGCCGTTACTCACGTGCTGAGCTATTTTTCAATTTCTATTTTTAATGTCTAGT
74618333 TTTTA
261 TTTTA
74618338 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGTTGAGGTATTTTCAATTAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGTTGAGGTATTTTCAATTAAT
* *
74618403 GTTTTTTCAACTTATGCTTTTCAAGAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTC
66 GTTTTTTCAACTTATGCTTTTCAAGAATAAACTCATATTACGAGAAGTGAGTTGAGCCTCGGGTC
* *
74618468 ACATGCCGAGATGTTTTCAAAATCTGTTTGGCAAATTCTGTTTTCAAAAATCAACTCATATTGCG
131 ACATGCCGAGATATTTTCAAAATCTGTTTGGCAAATTCTGTTTTCAAAAATCAACTAATATTGCG
* *
74618533 AGAAGTGAGTTGAGCCGTTGCTCACGTGCTGAGCTATTTTTCAATTTCTGTTTTTAATGTCTAGT
196 AGAAGTGAGTTGAGCCGTTACTCACGTGCTGAGCTATTTTTCAATTTCTATTTTTAATGTCTAGT
74618598 TTTTA
261 TTTTA
* * * **
74618603 AAAGTCAATTAATATTGCGAGAAATGAGTTGAGC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
74618637 TCAGGATCAC
Statistics
Matches: 283, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
265 283 1.00
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.36
Consensus pattern (265 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGTTGAGGTATTTTCAATTAAT
GTTTTTTCAACTTATGCTTTTCAAGAATAAACTCATATTACGAGAAGTGAGTTGAGCCTCGGGTC
ACATGCCGAGATATTTTCAAAATCTGTTTGGCAAATTCTGTTTTCAAAAATCAACTAATATTGCG
AGAAGTGAGTTGAGCCGTTACTCACGTGCTGAGCTATTTTTCAATTTCTATTTTTAATGTCTAGT
TTTTA
Found at i:74619310 original size:17 final size:16
Alignment explanation
Indices: 74619275--74619310 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
74619265 CCCCCACTTG
*
74619275 CCCACTTGCGCCGAAC
1 CCCACTTGCGCCCAAC
74619291 CCCACTTGCGCACCAAC
1 CCCACTTGCGC-CCAAC
74619308 CCC
1 CCC
74619311 CTACCATCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.19, C:0.56, G:0.14, T:0.11
Consensus pattern (16 bp):
CCCACTTGCGCCCAAC
Found at i:74620318 original size:3 final size:3
Alignment explanation
Indices: 74620303--74620380 Score: 51
Period size: 3 Copynumber: 26.7 Consensus size: 3
74620293 ATATTATCAA
*
74620303 TAT TAT TAC TAT TAT T-T TAT T-T CTAT TAT TAT CT-T TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT TAT TAT TAT
* *
74620346 CAGT TAT TAT TAT T-T TCAT TAT TGT TAT T-T TAT TA
1 TA-T TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TA
74620381 ACATATTAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
2 9 0.15
3 45 0.76
4 5 0.08
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:74620455 original size:22 final size:22
Alignment explanation
Indices: 74620383--74620455 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 22
74620373 TTTTATTAAC
* *
74620383 ATATTAATTATTTTTAA-AAAA
1 ATATTAATTATTATTAATAATA
**
74620404 AGTATT-ATTATTACAAATAATA
1 A-TATTAATTATTATTAATAATA
* *
74620426 ATAATAATTATTATTAATATTA
1 ATATTAATTATTATTAATAATA
74620448 ATATTAAT
1 ATATTAAT
74620456 ATATGTATAT
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
21 12 0.30
22 28 0.70
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (22 bp):
ATATTAATTATTATTAATAATA
Found at i:74620472 original size:13 final size:14
Alignment explanation
Indices: 74620448--74620478 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
74620438 ATTAATATTA
74620448 ATATTAATATATGT
1 ATATTAATATATGT
74620462 ATATT-ATATATGT
1 ATATTAATATATGT
74620475 ATAT
1 ATAT
74620479 ATTCGTACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
ATATTAATATATGT
Found at i:74637047 original size:21 final size:21
Alignment explanation
Indices: 74637008--74637056 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
74636998 TCATTTAAAA
74637008 ATTATAAAAATATAAATTATAT
1 ATTA-AAAAATATAAATTATAT
74637030 ATTAAAATAATA-AAATTATAT
1 ATTAAAA-AATATAAATTATAT
*
74637051 TTTAAA
1 ATTAAA
74637057 TCTCCTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
ATTAAAAAATATAAATTATAT
Found at i:74646459 original size:10 final size:11
Alignment explanation
Indices: 74646435--74646468 Score: 52
Period size: 10 Copynumber: 3.1 Consensus size: 11
74646425 ATATAAAATC
74646435 AGAAAAGAGAAA
1 AGAAAA-AGAAA
74646447 AGAAAAA-AAA
1 AGAAAAAGAAA
74646457 AGAAAAAGAAA
1 AGAAAAAGAAA
74646468 A
1 A
74646469 CAAATTTTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.48
11 5 0.24
12 6 0.29
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
AGAAAAAGAAA
Found at i:74646463 original size:16 final size:17
Alignment explanation
Indices: 74646437--74646468 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
74646427 ATAAAATCAG
74646437 AAAAGAGAAAAGAAAAA
1 AAAAGAGAAAAGAAAAA
74646454 AAAAGA-AAAAGAAAA
1 AAAAGAGAAAAGAAAA
74646469 CAAATTTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (17 bp):
AAAAGAGAAAAGAAAAA
Found at i:74650470 original size:19 final size:21
Alignment explanation
Indices: 74650446--74650489 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
74650436 ATTATTTTTT
74650446 AAAATAA-ATTAAAATT-TAA
1 AAAATAATATTAAAATTATAA
*
74650465 AAAATAATTTTAAAATTATAA
1 AAAATAATATTAAAATTATAA
74650486 AAAA
1 AAAA
74650490 ATTTATTACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.32
20 8 0.36
21 7 0.32
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
AAAATAATATTAAAATTATAA
Found at i:74652037 original size:31 final size:31
Alignment explanation
Indices: 74651989--74652049 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
74651979 AATGATTATT
74651989 GAACTATTTGAAAGTTTTTATTGAAGTCACA
1 GAACTATTTGAAAGTTTTTATTGAAGTCACA
* *
74652020 GAACTGTTT-AAATGTTTTTATTTAAGTCAC
1 GAACTATTTGAAA-GTTTTTATTGAAGTCAC
74652050 TAGGATGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 3 0.11
31 24 0.89
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.43
Consensus pattern (31 bp):
GAACTATTTGAAAGTTTTTATTGAAGTCACA
Found at i:74653605 original size:59 final size:58
Alignment explanation
Indices: 74653526--74653655 Score: 174
Period size: 57 Copynumber: 2.2 Consensus size: 58
74653516 GCTGACATAT
* * * *
74653526 TAATAATAGTTTTGATATCAAGTCGTGTGAATTATTAATTAGATGATTTTTTTTAA-TAAA
1 TAATAATAATTTTAATATCAAGT--TGTGAATTATTAATTAGATG-TTGTTTTTAACAAAA
*
74653586 -AATAATAATTTTAATATCAAGTTGTGAATTATTAATTGGATGTTGTTTTTAACAAAA
1 TAATAATAATTTTAATATCAAGTTGTGAATTATTAATTAGATGTTGTTTTTAACAAAA
74653643 TAATAATAATTTT
1 TAATAATAATTTT
74653656 TTCGTGATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
56 9 0.14
57 22 0.35
58 12 0.19
59 20 0.32
ACGTcount: A:0.39, C:0.03, G:0.12, T:0.46
Consensus pattern (58 bp):
TAATAATAATTTTAATATCAAGTTGTGAATTATTAATTAGATGTTGTTTTTAACAAAA
Found at i:74654724 original size:18 final size:21
Alignment explanation
Indices: 74654698--74654738 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 21
74654688 TTCCTTTTAT
*
74654698 ATTTATACATAAT-TT-TTTC
1 ATTTATACAAAATATTATTTC
74654717 ATTT-TACAAAATATTATTTC
1 ATTTATACAAAATATTATTTC
74654737 AT
1 AT
74654739 CTCATAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 7 0.37
19 6 0.32
20 6 0.32
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTTATACAAAATATTATTTC
Found at i:74655527 original size:17 final size:15
Alignment explanation
Indices: 74655505--74655548 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 15
74655495 TGTGAATGAG
74655505 AAAAATAATATTATATT
1 AAAAATAATATT-TA-T
74655522 AAAAAT-ATATTTAT
1 AAAAATAATATTTAT
74655536 AAAAA-AATATTTA
1 AAAAATAATATTTA
74655549 ATAATTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 13 0.50
15 2 0.08
16 5 0.19
17 6 0.23
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AAAAATAATATTTAT
Found at i:74662678 original size:6 final size:6
Alignment explanation
Indices: 74662667--74662738 Score: 99
Period size: 6 Copynumber: 11.7 Consensus size: 6
74662657 AGAAAGAATG
* *
74662667 TATGTA TATGTA GATGTA TATGTA TATGTA TATGTA TATGTA TATGTG
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
*
74662715 TATGTA TATTTGTA TATATA TATG
1 TATGTA TA--TGTA TATGTA TATG
74662739 GTTATATGTG
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
6 52 0.90
8 6 0.10
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.50
Consensus pattern (6 bp):
TATGTA
Found at i:74668904 original size:23 final size:23
Alignment explanation
Indices: 74668878--74668953 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
74668868 ATAAGTGCCA
74668878 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
74668901 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
74668924 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
74668947 CACTGAT
1 CACTGAT
74668954 CAATAACACT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:74676244 original size:23 final size:23
Alignment explanation
Indices: 74676218--74676314 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
74676208 ATAAGTGCCA
74676218 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
74676241 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
74676264 CACTG--ATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
74676285 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
74676308 CACTGAT
1 CACTGAT
74676315 CAATAACACT
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
21 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:74676283 original size:44 final size:44
Alignment explanation
Indices: 74676225--74676314 Score: 162
Period size: 44 Copynumber: 2.0 Consensus size: 44
74676215 CCACACTGAT
* *
74676225 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
74676269 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
74676313 AT
1 AT
74676315 CAATAACACT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (44 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
Found at i:74685787 original size:16 final size:17
Alignment explanation
Indices: 74685768--74685805 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
74685758 CTCAGTAACA
*
74685768 TTTTAT-TTAATAATAT
1 TTTTATCTTAAAAATAT
74685784 TTTTATCTTAAAAATAT
1 TTTTATCTTAAAAATAT
74685801 TTTTA
1 TTTTA
74685806 AAAAACAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTATCTTAAAAATAT
Found at i:74686877 original size:29 final size:29
Alignment explanation
Indices: 74686834--74686891 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
74686824 TATTTTCTAG
*
74686834 TAGGAATAGCATTTTGATATGATAGTAAA
1 TAGGAATAGCATTTTGATATGATAATAAA
*
74686863 TAGGAATAGCGTTTTGATATGATAATAAA
1 TAGGAATAGCATTTTGATATGATAATAAA
74686892 AATGGGTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.34
Consensus pattern (29 bp):
TAGGAATAGCATTTTGATATGATAATAAA
Found at i:74689786 original size:3 final size:3
Alignment explanation
Indices: 74689780--74689823 Score: 63
Period size: 3 Copynumber: 14.3 Consensus size: 3
74689770 TTTTATTATA
74689780 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT -AT AAAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT -AAT AAT A
74689824 TTGTTCTCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 2 0.05
3 31 0.82
4 5 0.13
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:74689794 original size:9 final size:10
Alignment explanation
Indices: 74689777--74689823 Score: 73
Period size: 9 Copynumber: 5.0 Consensus size: 10
74689767 TTATTTTATT
74689777 ATAAATAATA
1 ATAAATAATA
74689787 AT-AATAATA
1 ATAAATAATA
74689796 AT-AATAATA
1 ATAAATAATA
74689805 ATAAATAAT-
1 ATAAATAATA
74689814 ATAAATAATA
1 ATAAATAATA
74689824 TTGTTCTCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
9 27 0.77
10 8 0.23
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
ATAAATAATA
Found at i:74693767 original size:14 final size:15
Alignment explanation
Indices: 74693743--74693777 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
74693733 CGCTTTTGAA
74693743 AATTATTTATTTTAT
1 AATTATTTATTTTAT
74693758 AATT-TTTATTTTAT
1 AATTATTTATTTTAT
*
74693772 TATTAT
1 AATTAT
74693778 AACATTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
AATTATTTATTTTAT
Found at i:74693768 original size:18 final size:19
Alignment explanation
Indices: 74693745--74693795 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
74693735 CTTTTGAAAA
*
74693745 TTATTTATTTTATAA-TTT
1 TTATTTATTTTATAACATT
74693763 TTATTTTATTATTATAACATT
1 TTA-TTTATT-TTATAACATT
74693784 TTATATTATTTT
1 TTAT-TTATTTT
74693796 TGGATAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.11
19 6 0.21
20 9 0.32
21 10 0.36
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (19 bp):
TTATTTATTTTATAACATT
Found at i:74698382 original size:24 final size:24
Alignment explanation
Indices: 74698354--74698402 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
74698344 GGAGAAGAGA
74698354 TAGATGAAGAAACAATTTATAATT
1 TAGATGAAGAAACAATTTATAATT
74698378 TAGATGAAGAAACAATTTATAATT
1 TAGATGAAGAAACAATTTATAATT
74698402 T
1 T
74698403 TCCAATGCGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.12, T:0.35
Consensus pattern (24 bp):
TAGATGAAGAAACAATTTATAATT
Found at i:74701751 original size:48 final size:48
Alignment explanation
Indices: 74701662--74701755 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
74701652 TTTCTTGGCT
* * *
74701662 TAAAAACGCCTAAGTCAGCCTAACTTCCACCGATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
74701710 TAAAAACGCCTAAGTCAG-CTCAA-TTCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
74701756 AGAATTCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 5 0.12
48 36 0.88
ACGTcount: A:0.39, C:0.27, G:0.14, T:0.20
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:74723350 original size:21 final size:22
Alignment explanation
Indices: 74723325--74723384 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
74723315 AATTTAACAA
*
74723325 ATAAATATATATTTAAAATTAT
1 ATAAATATATATTTAAAATGAT
* *
74723347 -TAAATATTAAATTAAAAATGAT
1 ATAAATA-TATATTTAAAATGAT
74723369 ATAAATAT-T-TTTAAAA
1 ATAAATATATATTTAAAA
74723385 AAAATTTGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
20 6 0.19
21 6 0.19
22 13 0.42
23 6 0.19
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAAATATATATTTAAAATGAT
Found at i:74737984 original size:6 final size:6
Alignment explanation
Indices: 74737975--74738000 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
74737965 AAGAAAACGG
74737975 ATCTAA ATCTAA ATCTAA ATCTAA AT
1 ATCTAA ATCTAA ATCTAA ATCTAA AT
74738001 GAAGGTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (6 bp):
ATCTAA
Found at i:74752309 original size:17 final size:18
Alignment explanation
Indices: 74752289--74752325 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
74752279 TTTATGATTA
*
74752289 ATTTATAATTATTT-ATG
1 ATTTATAAATATTTAATG
74752306 ATTTATAAATATTTAATG
1 ATTTATAAATATTTAATG
74752324 AT
1 AT
74752326 GTAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (18 bp):
ATTTATAAATATTTAATG
Found at i:74755531 original size:31 final size:31
Alignment explanation
Indices: 74755493--74755551 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
74755483 AATAGGGGCC
**
74755493 AATGTGAACCTAATTGTTAAATTCATGAACT
1 AATGTGAACCTAATTCCTAAATTCATGAACT
*
74755524 AATGTGAACCTACTTCCTAAATTCATGA
1 AATGTGAACCTAATTCCTAAATTCATGA
74755552 GTAAAAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (31 bp):
AATGTGAACCTAATTCCTAAATTCATGAACT
Found at i:74757569 original size:16 final size:17
Alignment explanation
Indices: 74757524--74757571 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
74757514 TGTTTTTAAG
*
74757524 TTTATAATATACATATTT
1 TTTAT-ATATATATATTT
74757542 TTTATATATATATATTT
1 TTTATATATATATATTT
*
74757559 TTTA-ATTTATATA
1 TTTATATATATATA
74757572 ACAATATACT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.29
17 15 0.54
18 5 0.18
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTATATATATATATTT
Found at i:74758107 original size:15 final size:16
Alignment explanation
Indices: 74758087--74758116 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74758077 TGGTATAGTA
74758087 AAATA-TTAAAAAAAT
1 AAATATTTAAAAAAAT
74758102 AAATATTTAAAAAAA
1 AAATATTTAAAAAAA
74758117 AAGACACATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAATATTTAAAAAAAT
Found at i:74759939 original size:2 final size:2
Alignment explanation
Indices: 74759932--74759960 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
74759922 TTATAATTTT
74759932 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
74759961 GAAATTTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:74762237 original size:12 final size:12
Alignment explanation
Indices: 74762220--74762244 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74762210 CTAACAGCTC
74762220 CAGTATTAGGAG
1 CAGTATTAGGAG
74762232 CAGTATTAGGAG
1 CAGTATTAGGAG
74762244 C
1 C
74762245 CCTGATGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24
Consensus pattern (12 bp):
CAGTATTAGGAG
Found at i:74774877 original size:21 final size:22
Alignment explanation
Indices: 74774853--74774895 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
74774843 AAATATATTG
*
74774853 AGTAAATTAATTT-TTTTAAAA
1 AGTAAATTAATTTCTATTAAAA
*
74774874 AGTAATTTAATTTCTATTAAAA
1 AGTAAATTAATTTCTATTAAAA
74774896 TAAATAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (22 bp):
AGTAAATTAATTTCTATTAAAA
Found at i:74778325 original size:27 final size:29
Alignment explanation
Indices: 74778272--74778327 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 29
74778262 GTAATACATT
* *
74778272 TTTTAAAAATTGATAATATATATTTTTAA
1 TTTTAAAAATTGATAATACATAATTTTAA
*
74778301 TTTTAAAAA-TG-TAATGCATAATTTTAA
1 TTTTAAAAATTGATAATACATAATTTTAA
74778328 ACATGAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 13 0.54
28 2 0.08
29 9 0.38
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (29 bp):
TTTTAAAAATTGATAATACATAATTTTAA
Found at i:74778445 original size:23 final size:21
Alignment explanation
Indices: 74778407--74778458 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
74778397 GAATATTTGA
74778407 AAAAAAATAATTAATTTATTTT
1 AAAAAAATAATTAATTT-TTTT
74778429 AAAAAAAT-ATTGAAATTTTTTT
1 AAAAAAATAATT--AATTTTTTT
*
74778451 AATAAAAT
1 AAAAAAAT
74778459 TAATATATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 3 0.11
22 19 0.70
23 5 0.19
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (21 bp):
AAAAAAATAATTAATTTTTTT
Found at i:74778559 original size:21 final size:18
Alignment explanation
Indices: 74778534--74778573 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
74778524 TTTGATTTTT
74778534 TAATATATTCACATATTTAG
1 TAATATA-T-ACATATTTAG
74778554 TAA-ATATACATATTTAG
1 TAATATATACATATTTAG
74778571 TAA
1 TAA
74778574 ATAAATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 13 0.65
18 1 0.05
19 3 0.15
20 3 0.15
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.42
Consensus pattern (18 bp):
TAATATATACATATTTAG
Found at i:74778564 original size:17 final size:17
Alignment explanation
Indices: 74778544--74778576 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
74778534 TAATATATTC
74778544 ACATATTTAGTAAATAT
1 ACATATTTAGTAAATAT
74778561 ACATATTTAGTAAATA
1 ACATATTTAGTAAATA
74778577 AATATACTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
ACATATTTAGTAAATAT
Found at i:74781895 original size:51 final size:51
Alignment explanation
Indices: 74781835--74781937 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
74781825 ACCAAAAAGG
*
74781835 TTCAATTGCTTAAACATGCTATTTATCCAAATAAATGTGAATTAATTATTT
1 TTCAATTGCTTAAACATGCTATTTATCCAAATAAATGTGAACTAATTATTT
74781886 TTCAATTGCTTAAACATGCTATTTATCCAAATAAATGTGAACTAATTATTT
1 TTCAATTGCTTAAACATGCTATTTATCCAAATAAATGTGAACTAATTATTT
74781937 T
1 T
74781938 GTCACCACAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.43
Consensus pattern (51 bp):
TTCAATTGCTTAAACATGCTATTTATCCAAATAAATGTGAACTAATTATTT
Found at i:74785033 original size:22 final size:23
Alignment explanation
Indices: 74785002--74785047 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
74784992 TAATAATTTT
*
74785002 AATGAATTTTA-ACTTTTTTAAA
1 AATGAATTTTATAATTTTTTAAA
*
74785024 AATGATTTTTATAATTTTTTAAA
1 AATGAATTTTATAATTTTTTAAA
74785047 A
1 A
74785048 TTTAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.52
Consensus pattern (23 bp):
AATGAATTTTATAATTTTTTAAA
Found at i:74795485 original size:35 final size:35
Alignment explanation
Indices: 74795446--74795517 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
74795436 CATCTCCGGA
*
74795446 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
* *
74795481 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
74795516 GC
1 GC
74795518 GATCCTAGAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.26
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:74800665 original size:35 final size:35
Alignment explanation
Indices: 74800626--74800698 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
74800616 CATCTCCGGA
*
74800626 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
* *
74800661 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
74800696 GCT
1 GCT
74800699 ATCCTAGACT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:74803439 original size:10 final size:10
Alignment explanation
Indices: 74803424--74803448 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
74803414 AAGCAAGGAA
74803424 AGAAAGTAAC
1 AGAAAGTAAC
74803434 AGAAAGTAAC
1 AGAAAGTAAC
74803444 AGAAA
1 AGAAA
74803449 AATAACTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.08, G:0.20, T:0.08
Consensus pattern (10 bp):
AGAAAGTAAC
Found at i:74807765 original size:10 final size:10
Alignment explanation
Indices: 74807750--74807774 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
74807740 AAGTAAGGAA
74807750 AGAAAGTAAC
1 AGAAAGTAAC
74807760 AGAAAGTAAC
1 AGAAAGTAAC
74807770 AGAAA
1 AGAAA
74807775 AATAACTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.08, G:0.20, T:0.08
Consensus pattern (10 bp):
AGAAAGTAAC
Found at i:74809770 original size:33 final size:33
Alignment explanation
Indices: 74809730--74809799 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
74809720 TTTTTATCAC
74809730 TTAAAATTTTGTTTCTCAATTTAGTTAATTTAA
1 TTAAAATTTTGTTTCTCAATTTAGTTAATTTAA
74809763 TTAAAATTTTGTTTCTCAATTTAGTTAATTTAA
1 TTAAAATTTTGTTTCTCAATTTAGTTAATTTAA
74809796 TTAA
1 TTAA
74809800 GATAATTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (33 bp):
TTAAAATTTTGTTTCTCAATTTAGTTAATTTAA
Found at i:74812148 original size:86 final size:86
Alignment explanation
Indices: 74812003--74812174 Score: 344
Period size: 86 Copynumber: 2.0 Consensus size: 86
74811993 TGAACATAAA
74812003 TGGCAGAAGTATGAGTTCTAAATTGATCATAAACTTCAAATGTTTCAAACACCAATTAAGTCCTT
1 TGGCAGAAGTATGAGTTCTAAATTGATCATAAACTTCAAATGTTTCAAACACCAATTAAGTCCTT
74812068 GCGTCAATCTAACTGTTACAC
66 GCGTCAATCTAACTGTTACAC
74812089 TGGCAGAAGTATGAGTTCTAAATTGATCATAAACTTCAAATGTTTCAAACACCAATTAAGTCCTT
1 TGGCAGAAGTATGAGTTCTAAATTGATCATAAACTTCAAATGTTTCAAACACCAATTAAGTCCTT
74812154 GCGTCAATCTAACTGTTACAC
66 GCGTCAATCTAACTGTTACAC
74812175 GATTCCATTT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 86 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (86 bp):
TGGCAGAAGTATGAGTTCTAAATTGATCATAAACTTCAAATGTTTCAAACACCAATTAAGTCCTT
GCGTCAATCTAACTGTTACAC
Found at i:74813547 original size:27 final size:26
Alignment explanation
Indices: 74813492--74813549 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
74813482 AACTTAGCAC
*
74813492 TTTTTTCCTAATTTGGTACCTAAGCT
1 TTTTTTCCTAATTTGATACCTAAGCT
**
74813518 TTTTTTCCTAATTTGATATTTAAGCT
1 TTTTTTCCTAATTTGATACCTAAGCT
74813544 TTTTTT
1 TTTTTT
74813550 TATTCAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.19, C:0.14, G:0.09, T:0.59
Consensus pattern (26 bp):
TTTTTTCCTAATTTGATACCTAAGCT
Found at i:74826144 original size:21 final size:20
Alignment explanation
Indices: 74826088--74826144 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 20
74826078 AAACAGGAAG
74826088 CTTTTTCATTCTTTTTCTTCC
1 CTTTTTC-TTCTTTTTCTTCC
*
74826109 CTTTTCTTTTCTTTTTCTTTTCC
1 CTTTT-TCTTCTTTTTC--TTCC
74826132 CTTTTTCTT-TTTT
1 CTTTTTCTTCTTTT
74826145 CTCTAAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
21 18 0.58
22 4 0.13
23 9 0.29
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.74
Consensus pattern (20 bp):
CTTTTTCTTCTTTTTCTTCC
Found at i:74826413 original size:17 final size:18
Alignment explanation
Indices: 74826347--74826426 Score: 60
Period size: 18 Copynumber: 4.6 Consensus size: 18
74826337 TGTACTATTT
*
74826347 ATTTTTAAAT-TTGTATGA
1 ATTTTTAAATATTTTAT-A
*
74826365 CTTTTTAAATTATTTTA-A
1 ATTTTTAAA-TATTTTATA
* * *
74826383 A-CTCTAATTATTTTA-A
1 ATTTTTAAATATTTTATA
*
74826399 GTTTTTAAATATTTTATA
1 ATTTTTAAATATTTTATA
74826417 ATTTTTAAAT
1 ATTTTTAAAT
74826427 TATTAGTTAC
Statistics
Matches: 47, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
16 8 0.17
17 15 0.32
18 19 0.40
19 1 0.02
20 4 0.09
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (18 bp):
ATTTTTAAATATTTTATA
Found at i:74826423 original size:18 final size:17
Alignment explanation
Indices: 74826366--74826426 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
74826356 TTTGTATGAC
74826366 TTTTTAAATTATTTTAAA
1 TTTTTAAA-TATTTTAAA
* * * *
74826384 -CTCTAATTATTTTAAG
1 TTTTTAAATATTTTAAA
74826400 TTTTTAAATATTTTATAA
1 TTTTTAAATATTTTA-AA
74826418 TTTTTAAAT
1 TTTTTAAAT
74826427 TATTAGTTAC
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
16 8 0.24
17 15 0.45
18 10 0.30
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (17 bp):
TTTTTAAATATTTTAAA
Found at i:74830041 original size:21 final size:21
Alignment explanation
Indices: 74829983--74830043 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
74829973 CCATGTCTAC
74829983 TCCTTCC-TTTCTACTCTCGCTT
1 TCCTTCCATTTCT-CTCTC-CTT
*
74830005 TCCTTCCTTTTC-CTCTCCTT
1 TCCTTCCATTTCTCTCTCCTT
74830025 T-CTCTCCATTTCTCTCTCC
1 TCCT-TCCATTTCTCTCTCC
74830044 CAACAACCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
19 2 0.06
20 11 0.31
21 11 0.31
22 7 0.20
23 4 0.11
ACGTcount: A:0.03, C:0.44, G:0.02, T:0.51
Consensus pattern (21 bp):
TCCTTCCATTTCTCTCTCCTT
Found at i:74846988 original size:19 final size:19
Alignment explanation
Indices: 74846964--74847004 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
74846954 TTTTTATTAC
74846964 AAATTAGGCGGAAGTGTAT
1 AAATTAGGCGGAAGTGTAT
*
74846983 AAATTAGGCTGAAGTGTAT
1 AAATTAGGCGGAAGTGTAT
74847002 AAA
1 AAA
74847005 AAGCTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.27, T:0.27
Consensus pattern (19 bp):
AAATTAGGCGGAAGTGTAT
Found at i:74847321 original size:25 final size:26
Alignment explanation
Indices: 74847271--74847321 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
74847261 GTACATTTAA
* *
74847271 AATTTAGTCCTATTTTTATTTTAAAT
1 AATTTAGTCCAATTATTATTTTAAAT
*
74847297 AATTTAGTTCAATTATT-TTTTAAAT
1 AATTTAGTCCAATTATTATTTTAAAT
74847322 TTTAAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (26 bp):
AATTTAGTCCAATTATTATTTTAAAT
Found at i:74847325 original size:23 final size:24
Alignment explanation
Indices: 74847266--74847325 Score: 59
Period size: 26 Copynumber: 2.5 Consensus size: 24
74847256 TATTTGTACA
* * *
74847266 TTTAAAATTTAGTCCTATTTTTAT
1 TTTAAATTTTAGTCCAATTATTAT
*
74847290 TTTAAATAATTTAGTTCAATTATT-T
1 TTTAAAT--TTTAGTCCAATTATTAT
74847315 TTTAAATTTTA
1 TTTAAATTTTA
74847326 AAAATTTATG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
23 4 0.13
24 6 0.20
25 8 0.27
26 12 0.40
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.58
Consensus pattern (24 bp):
TTTAAATTTTAGTCCAATTATTAT
Found at i:74853310 original size:22 final size:23
Alignment explanation
Indices: 74853250--74853326 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
74853240 AGATTTTAGT
* *
74853250 TATACATAAAAATTGATAATAAA
1 TATACATAAATATTAATAATAAA
**
74853273 T-TACATTGCATATTAATAATAAA
1 TATACA-TAAATATTAATAATAAA
*
74853296 TATACAT-AATATTAATATTAATAA
1 TATACATAAATATTAATAAT-A-AA
74853320 TATACAT
1 TATACAT
74853327 TGATAATAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
22 14 0.32
23 17 0.39
24 13 0.30
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (23 bp):
TATACATAAATATTAATAATAAA
Found at i:74854606 original size:25 final size:26
Alignment explanation
Indices: 74854571--74854619 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
74854561 TCTCCAATTC
*
74854571 TTAAACTTGATTTTGA-AATAAAAAA
1 TTAAACATGATTTTGATAATAAAAAA
*
74854596 TTAAACATGATTTTTATAATAAAA
1 TTAAACATGATTTTGATAATAAAA
74854620 CTTATTCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (26 bp):
TTAAACATGATTTTGATAATAAAAAA
Found at i:74854683 original size:45 final size:46
Alignment explanation
Indices: 74854634--74854724 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
74854624 TTCTTCACAG
*
74854634 AATTAAA-TTCCTACTATAAAATTTTTAAAAAATACAACCACTATA
1 AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
* * *
74854679 AATTAAATTTCCTACTTTGAAATTTTCAAAAAATACAATCACTATA
1 AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
74854725 GACATATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 7 0.17
46 34 0.83
ACGTcount: A:0.48, C:0.15, G:0.01, T:0.35
Consensus pattern (46 bp):
AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
Found at i:74859985 original size:120 final size:120
Alignment explanation
Indices: 74859680--74860420 Score: 1396
Period size: 120 Copynumber: 6.2 Consensus size: 120
74859670 TTTTCAAGTT
74859680 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
74859745 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
74859799 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
74859864 TAATATAAGAACATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
74859919 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
74859984 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
74860038 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
74860103 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
74860158 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
74860223 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
74860278 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
74860343 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
74860398 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
74860421 TAAATATGAT
Statistics
Matches: 614, Mismatches: 6, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
119 214 0.35
120 400 0.65
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:74860099 original size:239 final size:239
Alignment explanation
Indices: 74859680--74860420 Score: 1410
Period size: 239 Copynumber: 3.1 Consensus size: 239
74859670 TTTTCAAGTT
74859680 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
74859745 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
74859810 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
* * *
74859875 CATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
196 TATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
74859919 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
74859984 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
74860049 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
74860114 TATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
196 TATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
*
74860158 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
74860223 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTT-TTTAAATTATATAGTTTAATTAAAATATATTTAA
*
74860288 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
130 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
74860353 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
195 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
74860398 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
74860421 TAAATATGAT
Statistics
Matches: 494, Mismatches: 7, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
239 330 0.67
240 164 0.33
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (239 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
TATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
Found at i:74860157 original size:18 final size:17
Alignment explanation
Indices: 74860129--74860163 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
74860119 ATTATTAAGA
*
74860129 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
74860146 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
74860164 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:74860342 original size:359 final size:359
Alignment explanation
Indices: 74859680--74860420 Score: 1394
Period size: 359 Copynumber: 2.1 Consensus size: 359
74859670 TTTTCAAGTT
74859680 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
74859745 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
*
74859810 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAA
**
74859875 CATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
196 CATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
*
74859940 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
261 TTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
74860005 TAAGAATTTT-TTAAATTATATAGTTTAATTAAA
326 TAAGAATTTTATTAAATTATATAGTTTAATTAAA
74860038 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
74860103 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAAATATATTTAA
74860168 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
130 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
* *
74860233 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
195 ACATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
74860298 GTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTA
260 GTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTA
*
74860363 TTAAGAATTTTATTAAATTATATATTTTAATTAAA
325 TTAAGAATTTTATTAAATTATATAGTTTAATTAAA
74860398 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
74860421 TAAATATGAT
Statistics
Matches: 373, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
358 96 0.26
359 232 0.62
360 45 0.12
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (359 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAA
CATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
TTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
TAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:74860397 original size:18 final size:17
Alignment explanation
Indices: 74860369--74860403 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
74860359 ATTATTAAGA
*
74860369 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
74860386 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
74860404 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:74860617 original size:44 final size:45
Alignment explanation
Indices: 74860568--74860658 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
74860558 ACCTCTATTC
* * *
74860568 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
74860612 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
74860657 CA
1 CA
74860659 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:74860660 original size:16 final size:16
Alignment explanation
Indices: 74860639--74860707 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
74860629 GATTAGCTAT
74860639 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
74860655 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
74860672 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
74860688 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
74860704 TACA
1 TACA
74860708 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:74860681 original size:33 final size:32
Alignment explanation
Indices: 74860639--74860707 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
74860629 GATTAGCTAT
74860639 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
74860672 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
74860704 TACA
1 TACA
74860708 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:74862052 original size:24 final size:24
Alignment explanation
Indices: 74862025--74862073 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
74862015 AATTTTTATC
*
74862025 AAATACAAATATCAAATTAAAAAA
1 AAATACAAATACCAAATTAAAAAA
* *
74862049 AAATACATATACCACATTAAAAAA
1 AAATACAAATACCAAATTAAAAAA
74862073 A
1 A
74862074 TAATGTCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.20
Consensus pattern (24 bp):
AAATACAAATACCAAATTAAAAAA
Found at i:74867612 original size:31 final size:31
Alignment explanation
Indices: 74867574--74867635 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
74867564 ATAAGGAAAA
74867574 AAAAATCAATCTTTCTGAAAAAATTACGATT
1 AAAAATCAATCTTTCTGAAAAAATTACGATT
*
74867605 AAAAATCAATCTTTCTGAAATAATTACGATT
1 AAAAATCAATCTTTCTGAAAAAATTACGATT
74867636 CTAATTCTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.47, C:0.13, G:0.06, T:0.34
Consensus pattern (31 bp):
AAAAATCAATCTTTCTGAAAAAATTACGATT
Found at i:74871591 original size:53 final size:53
Alignment explanation
Indices: 74871533--74871642 Score: 202
Period size: 53 Copynumber: 2.1 Consensus size: 53
74871523 AACATTATAA
74871533 AATAAAAATTTCGACCTCCAATAGATTTCTTTCTAACTCACTATCTTTTTAAT
1 AATAAAAATTTCGACCTCCAATAGATTTCTTTCTAACTCACTATCTTTTTAAT
* *
74871586 AATAAAAATTTCGACCTCCAGTAGATTTCTTTCTAACTCACTCTCTTTTTAAT
1 AATAAAAATTTCGACCTCCAATAGATTTCTTTCTAACTCACTATCTTTTTAAT
74871639 AATA
1 AATA
74871643 TGATGAATAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.41
Consensus pattern (53 bp):
AATAAAAATTTCGACCTCCAATAGATTTCTTTCTAACTCACTATCTTTTTAAT
Found at i:74877326 original size:19 final size:19
Alignment explanation
Indices: 74877304--74877344 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
74877294 TTAATTCAAA
* *
74877304 TATATATTATTTAATGAAT
1 TATATATAAATTAATGAAT
*
74877323 TATATATAAATTAATTAAT
1 TATATATAAATTAATGAAT
74877342 TAT
1 TAT
74877345 TTAATTCAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
TATATATAAATTAATGAAT
Found at i:74879645 original size:14 final size:14
Alignment explanation
Indices: 74879620--74879653 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
74879610 AAAGAATTAA
74879620 AGAAACAAAGAAAC
1 AGAAACAAAGAAAC
74879634 A-AAACAAAAGAAAC
1 AGAAAC-AAAGAAAC
74879648 AGAAAC
1 AGAAAC
74879654 GAAGCAGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.22
14 10 0.56
15 4 0.22
ACGTcount: A:0.74, C:0.15, G:0.12, T:0.00
Consensus pattern (14 bp):
AGAAACAAAGAAAC
Found at i:74880718 original size:39 final size:39
Alignment explanation
Indices: 74880608--74880742 Score: 105
Period size: 39 Copynumber: 3.4 Consensus size: 39
74880598 GACCTCGAGT
* * *
74880608 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** * ** *
74880649 CGATGAGGTACTAGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
* *
74880687 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
74880726 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
74880743 CCATTTGGTG
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 14 0.19
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:74881567 original size:4 final size:4
Alignment explanation
Indices: 74881558--74881582 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
74881548 ATTTTTACAA
74881558 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
74881583 CGAAAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:74887918 original size:21 final size:22
Alignment explanation
Indices: 74887889--74887935 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
74887879 CAGAAGGAGT
*
74887889 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
74887911 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
74887932 GAGT
1 GAGT
74887936 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:74890266 original size:18 final size:18
Alignment explanation
Indices: 74890234--74890283 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
74890224 AATAATTATA
*
74890234 AAAAAAATATTTAAAAGAT
1 AAAAAAATA-ATAAAAGAT
*
74890253 AAAAAAATAAT-AAATAT
1 AAAAAAATAATAAAAGAT
74890270 AAATAAAATAATAA
1 AAA-AAAATAATAA
74890284 GAGAAACATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 8 0.30
18 9 0.33
19 10 0.37
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (18 bp):
AAAAAAATAATAAAAGAT
Found at i:74891860 original size:6 final size:6
Alignment explanation
Indices: 74891849--74891875 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
74891839 ATATTATTAT
74891849 AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAA
74891876 ATGCGTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:74893855 original size:31 final size:31
Alignment explanation
Indices: 74893787--74893861 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
74893777 TACTTGAATT
* *
74893787 AAAATTAAAGTTTTATGTATATATTTGAACC
1 AAAATTAAAATTTTATGTATATAATTGAACC
* * *
74893818 ACAATTAAAATTTTATTTGTATAATT-ATACC
1 AAAATTAAAATTTTATGTATATAATTGA-ACC
74893849 AAAATTAAAATTT
1 AAAATTAAAATTT
74893862 ATATATCAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
30 1 0.03
31 36 0.97
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (31 bp):
AAAATTAAAATTTTATGTATATAATTGAACC
Found at i:74894606 original size:20 final size:20
Alignment explanation
Indices: 74894550--74894613 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
74894540 ATATATATAT
*
74894550 TTTTTGATACTTCCTT-AAG-
1 TTTTTGATA-TTCCTTCATGA
* *
74894569 TTTTATGGTATTCTTTCATGA
1 TTTT-TGATATTCCTTCATGA
*
74894590 TTTTTGATATTCCTTCATTA
1 TTTTTGATATTCCTTCATGA
74894610 TTTT
1 TTTT
74894614 CTATACATCG
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
19 9 0.25
20 23 0.64
21 4 0.11
ACGTcount: A:0.19, C:0.12, G:0.09, T:0.59
Consensus pattern (20 bp):
TTTTTGATATTCCTTCATGA
Found at i:74894662 original size:20 final size:20
Alignment explanation
Indices: 74894637--74894687 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
74894627 TTTCGATACT
74894637 TTATCATAATTT-TTGCTAC
1 TTATCATAATTTGTTGCTAC
*
74894656 TTCATCAT-ATTTGTTGGTAC
1 TT-ATCATAATTTGTTGCTAC
74894676 ATTATCATAATT
1 -TTATCATAATT
74894688 CCCAGTATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 6 0.22
20 16 0.59
21 5 0.19
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.51
Consensus pattern (20 bp):
TTATCATAATTTGTTGCTAC
Found at i:74895196 original size:20 final size:20
Alignment explanation
Indices: 74895163--74895215 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
74895153 TTTTTTATTC
* *
74895163 CCTT-AAAATATTTAGTATT
1 CCTTCAAAATTTTTAGTATA
* *
74895182 TCTTCATAATTTTTAGTATA
1 CCTTCAAAATTTTTAGTATA
74895202 CCTTCAAAATTTTT
1 CCTTCAAAATTTTT
74895216 TTATGGTTTC
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 3 0.11
20 24 0.89
ACGTcount: A:0.32, C:0.13, G:0.04, T:0.51
Consensus pattern (20 bp):
CCTTCAAAATTTTTAGTATA
Found at i:74896635 original size:2 final size:2
Alignment explanation
Indices: 74896630--74896655 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
74896620 AAAAGTGGAA
74896630 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
74896656 GGGAGAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:74904665 original size:23 final size:22
Alignment explanation
Indices: 74904629--74904681 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
74904619 ACATGTAGTG
*
74904629 AAAAA-AAT-TAAATTATAATAT
1 AAAAATAATATAATTTA-AATAT
74904650 AAAACATAATATAATTTAAATAT
1 AAAA-ATAATATAATTTAAATAT
*
74904673 ATAAATAAT
1 AAAAATAAT
74904682 TGATATGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 4 0.15
22 6 0.22
23 11 0.41
24 6 0.22
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (22 bp):
AAAAATAATATAATTTAAATAT
Found at i:74908495 original size:13 final size:13
Alignment explanation
Indices: 74908479--74908503 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74908469 AAACTTAATT
74908479 ATAATTATAGTTA
1 ATAATTATAGTTA
74908492 ATAATTATAGTT
1 ATAATTATAGTT
74908504 TTACCAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
ATAATTATAGTTA
Done.